ID:

der_28

 Coordinate:

scaffold_4690:11188784-11188847 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.0 -35.6

Flybase annnotation

utr3 [utr3_minus_10826]

No Repeatable elements found

Sense Strand Reads

AACACAAATATCAAATCTATGGCAATAATAAATTGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCATATTATTAACAATGAAAACACTAATAGGTTAAGC

***********************************(((((.....(((((((((((((((..(((((((.(((..............))).)))))))..)))))))))))))))....)))))...************************************* 		Read size # Mismatch Hit Count Total Norm Total V108

head

 M057

embryo

 M055

female body

 V060

head

 V107

male body		 V040

embryo
..................................................TTTAGAATTCCTACGCTTTACC............................................................................................ 22 0 1 5174.00 5174 2969 1261 619 167 60 98
..........................................................................................CAAAGCGTTTGGATTCTGAAAC.................................................... 22 0 1 931.00 931 579 158 44 80 39 31
..........................................................................................CAAAGCGTTTGGATTCTGAAACA................................................... 23 1 1 791.00 791 699 3 6 16 56 11
..................................................TTTAGAATTCCTACGCTTTAC............................................................................................. 21 0 1 562.00 562 437 34 46 35 3 7
..................................................TTTAGAATTCCTACGCTTTACCG........................................................................................... 23 0 1 256.00 256 190 17 32 2 4 11
........................................................................GTGGCATACGAAATTCGG.......................................................................... 18 0 1 233.00 233 215 0 1 6 1 10
..................................................TGTAGAATTCCTACGCTTTACC............................................................................................ 22 1 1 176.00 176 0 175 0 1 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAA..................................................... 21 0 1 171.00 171 141 1 1 7 17 4
.........................................................................................GCAAAGCGTTTGGATTCTGAAA..................................................... 22 0 1 85.00 85 74 2 0 3 2 4
..........................................................................................CAAAGCGTTTGGATTCTGAA...................................................... 20 0 1 80.00 80 74 0 2 1 3 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACT................................................... 23 0 1 71.00 71 69 1 0 0 1 0
..........................................................................................CAAAGCGTTTGGATTCTG........................................................ 18 0 1 56.00 56 54 0 1 1 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAA.................................................... 22 1 1 56.00 56 47 0 1 5 3 0
...................................................TTAGAATTCCTACGCTTTACC............................................................................................ 21 0 1 45.00 45 3 5 37 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGA....................................................... 19 0 1 44.00 44 39 0 2 2 1 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAAC.................................................... 23 0 1 44.00 44 21 11 0 7 1 4
..................................................TTTAGAATTCCTACGCTTTA.............................................................................................. 20 0 1 40.00 40 34 1 3 2 0 0
..................................................TTCAGAATTCCTACGCTTTACC............................................................................................ 22 1 1 36.00 36 4 31 0 0 0 1
..................................................TTTAGAATTCCTACTCTTTACC............................................................................................ 22 1 1 29.00 29 23 0 1 1 0 4
..................................................TTTAGAATTCCTACGCTTTACA............................................................................................ 22 1 1 28.00 28 23 4 0 0 0 1
..................................................TTTAGAATTCCTACGATTTACC............................................................................................ 22 1 1 23.00 23 22 0 1 0 0 0
..................................................TTTAGAATTCATACGCTTTACC............................................................................................ 22 1 1 22.00 22 16 6 0 0 0 0
..................................................TTTTGAATTCCTACGCTTTACC............................................................................................ 22 1 1 18.00 18 1 17 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACG................................................... 23 1 1 17.00 17 17 0 0 0 0 0
..................................................TTTATAATTCCTACGCTTTACC............................................................................................ 22 1 1 17.00 17 17 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACAA.................................................. 24 2 1 16.00 16 11 0 1 1 3 0
..................................................TTTAGAATTACTACGCTTTACC............................................................................................ 22 1 1 16.00 16 15 1 0 0 0 0
.................................................CTTTAGAATTCCTACGCTTTACC............................................................................................ 23 1 1 16.00 16 8 8 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAAA................................................... 23 2 1 15.00 15 13 0 2 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGAAAC.................................................... 21 0 1 15.00 15 9 0 4 1 1 0
..........................................................................................CAAAGCGTTTGGATTCTGT....................................................... 19 1 1 14.00 14 13 0 0 1 0 0
..................................................TTTGGAATTCCTACGCTTTACC............................................................................................ 22 1 1 13.00 13 12 0 0 1 0 0
..........................................................................................CGAAGCGTTTGGATTCTGAAAC.................................................... 22 1 1 13.00 13 2 10 0 1 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACC................................................... 23 1 1 12.00 12 10 0 0 1 1 0
..........................................................................................AAAAGCGTTTGGATTCTGAAACA................................................... 23 2 1 11.00 11 11 0 0 0 0 0
........................................................................GTGGCATACGAAATTCGGT......................................................................... 19 1 1 11.00 11 9 0 0 0 0 2
..................................................TTTAGAATTCCTAAGCTTTACC............................................................................................ 22 1 1 10.00 10 10 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAA...................................................... 21 0 1 10.00 10 8 0 1 0 1 0
..................................................TTTAGAATTCCTACGCTTTAAC............................................................................................ 22 1 1 9.00 9 9 0 0 0 0 0
..................................................TTTATAATTCCTACGCTTTAC............................................................................................. 21 1 1 9.00 9 9 0 0 0 0 0
..........................................................................................CAAAGCGTTTTGATTCTGAAAC.................................................... 22 1 1 9.00 9 9 0 0 0 0 0
..........................................................................................CAAAGCGTTTGTATTCTGAAACA................................................... 23 2 1 8.00 8 7 0 0 1 0 0
..................................................TGTAGAATTCCTACGCTTTAC............................................................................................. 21 1 1 8.00 8 0 8 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGA....................................................... 20 0 1 8.00 8 7 0 0 0 1 0
....................................................TAGAATTCCTACGCTTTACC............................................................................................ 20 0 1 8.00 8 3 3 2 0 0 0
..................................................TTTAGAATTCCTACGCTTT............................................................................................... 19 0 1 8.00 8 8 0 0 0 0 0
..................................................TCTAGAATTCCTACGCTTTACC............................................................................................ 22 1 1 7.00 7 3 4 0 0 0 0
..................................................TTTAGAATTCCTACGCCTTACC............................................................................................ 22 1 1 7.00 7 4 1 0 1 0 1
..................................................CTTAGAATTCCTACGCTTTACC............................................................................................ 22 1 1 7.00 7 4 2 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTTAAACA................................................... 23 2 1 7.00 7 7 0 0 0 0 0
..................................................TTTAGAATTTCTACGCTTTACC............................................................................................ 22 1 1 7.00 7 6 1 0 0 0 0
..........................................................................................AAAAGCGTTTGGATTCTGAAAC.................................................... 22 1 1 7.00 7 7 0 0 0 0 0
..................................................TGTTGAATTCCTACGCTTTACC............................................................................................ 22 2 1 7.00 7 0 7 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTTAAAC.................................................... 22 1 1 7.00 7 5 0 0 0 0 2
...........................................................................................AAAGCGTTTGGATTCTGAAACA................................................... 22 1 1 7.00 7 6 0 0 0 1 0
..................................................TTTAGAATTCCTACGTTTTACC............................................................................................ 22 1 1 6.00 6 2 2 2 0 0 0
..................................................TTTAGAATTCCCACGCTTTACC............................................................................................ 22 1 1 6.00 6 3 3 0 0 0 0
..........................................................................................CAAATCGTTTGGATTCTGAAAC.................................................... 22 1 1 6.00 6 6 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTCCC............................................................................................ 22 1 1 6.00 6 4 0 0 2 0 0
..................................................TTTAGAATTCCTCCGCTTTACC............................................................................................ 22 1 1 6.00 6 3 2 0 0 0 1
..........................................................................................CAAAGCTTTTGGATTCTGAAAC.................................................... 22 1 1 6.00 6 4 1 1 0 0 0
..................................................TTAAGAATTCCTACGCTTTACC............................................................................................ 22 1 1 6.00 6 5 1 0 0 0 0
..................................................TTTAGAATTCTTACGCTTTACC............................................................................................ 22 1 1 6.00 6 5 0 1 0 0 0
..........................................................................................CAAAGCGTTTTGATTCTGAAACA................................................... 23 2 1 6.00 6 6 0 0 0 0 0
..........................................................................................CAATGCGTTTGGATTCTGAAAC.................................................... 22 1 1 6.00 6 0 6 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCA........................................................................................... 23 1 1 5.00 5 3 0 2 0 0 0
..................................................TTTAGAATTCCTACGCTTTACT............................................................................................ 22 1 1 5.00 5 1 0 4 0 0 0
........................................................................GTGGCATACTAAATTCGG.......................................................................... 18 1 1 5.00 5 5 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCGT.......................................................................................... 24 0 1 5.00 5 4 0 0 0 1 0
..................................................TTTAGAATTCCTATGCTTTACC............................................................................................ 22 1 1 5.00 5 3 0 0 2 0 0
..................................................TTTAGAGTTCCTACGCTTTACC............................................................................................ 22 1 1 5.00 5 3 2 0 0 0 0
.................................................CTTTAGAATTCCTACGCTTTAC............................................................................................. 22 1 1 5.00 5 4 0 1 0 0 0
..................................................TTTAGAATCCCTACGCTTTACC............................................................................................ 22 1 1 5.00 5 3 2 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAT.................................................... 22 1 1 4.00 4 4 0 0 0 0 0
...................................................TTAGAATTCCTACGCTTTAC............................................................................................. 20 0 1 4.00 4 1 0 3 0 0 0
..................................................GTTAGAATTCCTACGCTTTACC............................................................................................ 22 1 1 4.00 4 0 3 0 0 0 1
..........................................................................................CAAAGAGTTTGGATTCTGAAACA................................................... 23 2 1 4.00 4 4 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTATGAAAC.................................................... 22 1 1 4.00 4 4 0 0 0 0 0
..................................................TTTAGAATTCCTGCGCTTTACC............................................................................................ 22 1 1 4.00 4 3 0 1 0 0 0
..................................................TTTAGAATTCCTACGATTTAC............................................................................................. 21 1 1 4.00 4 3 0 0 1 0 0
..................................................TTTAGAATTCCTACGCTTACC............................................................................................. 21 2 1 4.00 4 3 0 0 1 0 0
..................................................TTTAGAATTCCTACGCTATACC............................................................................................ 22 1 1 4.00 4 2 1 1 0 0 0
..................................................TTTAGAATTCCTACTCTTTAC............................................................................................. 21 1 1 4.00 4 4 0 0 0 0 0
..................................................TTTAGGATTCCTACGCTTTACC............................................................................................ 22 1 1 4.00 4 3 1 0 0 0 0
..................................................ATTAGAATTCCTACGCTTTACC............................................................................................ 22 1 1 4.00 4 0 4 0 0 0 0
..........................................................................................AAAAGCGTTTGGATTCTG........................................................ 18 1 1 4.00 4 4 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTATGAAACA................................................... 23 2 1 4.00 4 4 0 0 0 0 0
..........................................................................................TAAAGCGTTTGGATTCTGAAAC.................................................... 22 1 1 4.00 4 2 1 0 0 0 1
..........................................................................................CAAAGCGTTTGGATTCTCAAAC.................................................... 22 1 1 3.00 3 2 0 0 1 0 0
..................................................TTTAGACTTCCTACGCTTTACC............................................................................................ 22 1 1 3.00 3 0 1 2 0 0 0
..................................................TTTACAATTCCTACGCTTTACC............................................................................................ 22 1 1 3.00 3 2 0 0 0 0 1
..........................................................................................CAAAGCGTTTGGATTCTGGAAC.................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTAA............................................................................................. 21 1 1 3.00 3 2 0 0 0 0 1
..........................................................................................CAAAGCGTTTGGATTCTGGAACA................................................... 23 2 1 3.00 3 3 0 0 0 0 0
........................................................................GTGTCATACGAAATTCGG.......................................................................... 18 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................CAAAGCGTTTGTATTCTGAAAC.................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTT................................................................................................ 18 0 1 3.00 3 3 0 0 0 0 0
..........................................................................................CAAAGCTTTTGGATTCTGAAACA................................................... 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTCTACC............................................................................................ 22 1 1 3.00 3 2 0 1 0 0 0
..................................................TATAGAATTCCTACGCTTTACC............................................................................................ 22 1 1 3.00 3 0 3 0 0 0 0
..........................................................................................CAAAGCGTTTGGATCCTGAAACA................................................... 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TTGAGAATTCCTACGCTTTACC............................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................CAAAGAGTTTGGATTCTGAAA..................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................CAAAGAGTTTGGATTCTGAAAA.................................................... 22 2 1 3.00 3 3 0 0 0 0 0
............................................................................................AAGCGTTTGGATTCTGAAAC.................................................... 20 0 1 3.00 3 2 0 0 0 0 1
..........................................................................................CAAAGAGTTTGGATTCTGAAAC.................................................... 22 1 1 3.00 3 3 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAACA................................................... 24 1 1 3.00 3 2 0 0 0 1 0
..................................................TTTAGAATTCCTACGCTTTGCC............................................................................................ 22 1 1 3.00 3 2 0 0 0 0 1
..........................................................................................CAAAGCGTTTGGATTCTGAAGCA................................................... 23 2 1 3.00 3 2 0 0 0 1 0
...................................................TTAGAATTACTACGCTTTACC............................................................................................ 21 1 1 3.00 3 0 1 2 0 0 0
..................................................TTCAGAATTCCTACGCTTTAC............................................................................................. 21 1 1 3.00 3 2 0 0 1 0 0
..................................................TTTAGAATTCCTACGCTTCACC............................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................CAAAGCGTTTTGATTCTGAAA..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................CTTAGAATTCCTACGCTTTAC............................................................................................. 21 1 1 2.00 2 1 0 1 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCT........................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
..................................................TTTGGAATTCCTACGCTTTAC............................................................................................. 21 1 1 2.00 2 1 0 0 1 0 0
..........................................................................................CAAAGCGTTTGGCTTCTGAAACT................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAG.................................................... 22 1 1 2.00 2 1 0 0 1 0 0
..............................................GATCTTTAGAATTCCTACGCTTTACC............................................................................................ 26 2 1 2.00 2 0 2 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTATC............................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTAGAATTCCTACCCTTTACC............................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTAGAATTCCTACTCTTTACCG........................................................................................... 23 1 1 2.00 2 1 0 1 0 0 0
...................................................TGAGAATTCCTACGCTTTACC............................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0
..................................................TGTAGAATTCCTACGCTTTACCG........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0
..................................................TTTAGAATTCGTACGCTTTACC............................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTATGAAA..................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACAG........................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0
........................................................................GTTGCATACGAAATTCGG.......................................................................... 18 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTCGAATTCCTACGCTTTACCG........................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0
..................................................TTAAGAATTCCTACGCTTTAC............................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAACCGTTTGGATTCTGAAAC.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGCTTCTGAAAC.................................................... 22 1 1 2.00 2 1 1 0 0 0 0
.................................................CGTTAGAATTCCTACGCTTTACC............................................................................................ 23 2 1 2.00 2 0 2 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAACCA................................................... 23 2 1 2.00 2 1 0 0 1 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAT..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAAGCGCTTGGATTCTGAAA..................................................... 21 1 1 2.00 2 0 0 1 0 1 0
..................................................TTTAGAATTCCTACGCTTTGC............................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTTAAACT................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAGA..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................TGCAGAATTCCTACGCTTTACC............................................................................................ 22 2 1 2.00 2 0 2 0 0 0 0
..........................................................................................CAAAGCGTTTTGATTCTGAAAA.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAAGCGTTTGCATTCTGAAAC.................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTATGAA...................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTAGAATTCCTGCGCTTTACCG........................................................................................... 23 1 1 2.00 2 1 0 0 0 1 0
..........................................................................................CAGAGCGTTTGGATTCTGAAACA................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................AAAAGCGTTTGGATTCTGAAAA.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.........................................................................................CCAAAGCGTTTGGATTCTGAAAC.................................................... 23 1 1 2.00 2 1 1 0 0 0 0
........................................................................GTGGCATACGAAATTAGG.......................................................................... 18 1 1 2.00 2 1 0 0 1 0 0
..........................................................................................CAAAGCGTTTGGATTATGAAAA.................................................... 22 2 1 2.00 2 1 0 0 1 0 0
..................................................TTTAGAATTCCTTCGCTTTACC............................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
........................................................................GTCGCATACGAAATTCGG.......................................................................... 18 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAATCGTTTGGATTCTGAA...................................................... 20 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGAAA..................................................... 20 0 1 2.00 2 1 0 0 0 1 0
..........................................................................................CAAATCGTTTGGATTCTGAAACA................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................TTTCGAATTCCTACGCTTTACC............................................................................................ 22 1 1 2.00 2 0 0 2 0 0 0
..........................................................................................CAAAGCGTTTGGATCCTGAAAC.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAG..................................................... 21 1 1 2.00 2 1 0 0 0 1 0
..........................................................................................CAAAGCGTTTGGATTCTGAGAC.................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..................................................TTAAGAATTCCTACGCTTTACCG........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAGGCGTTTGGATTCTGAAACA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATCCTGAAG..................................................... 21 2 1 1.00 1 1 0 0 0 0 0
................................................TCTTTAGAATTCCTACGCTTTACC............................................................................................ 24 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAATCGTTTGGACTCTGAAACA................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGCTTCTGAAACA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................AAAAGCGTTTGGATTCTGAA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTCGAGTTCCTACGCTTTACC............................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCATTTGGATTCTGAAAC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTTC............................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAACA.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGA....................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..................................................TGTAGAATTCCTGCGCTTTACC............................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TTTAGAATTCATACGCTTTA.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACACTTTACC............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TTTAGAACTCCTACGCTTTACC............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAGAGCGTTTGGATTCTGAAA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTCAGAATTCCTACGCTTTACA............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAGGCGTTTGGATTCTGAAAC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGTA...................................................... 20 1 1 1.00 1 0 0 0 0 0 1
.........................................................................................GCAAAGCGTTTGGATTCTAAAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAG..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGTT...................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACAT.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...................................................TTAGAATTCCTACAATTTACC............................................................................................ 21 2 1 1.00 1 0 0 0 0 0 1
..........................................................................................CAAAGCGTTTGGATTCTGAAAAT................................................... 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................GTGGCATACGAAACTCGG.......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGAAACT................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGTATTCTGAAA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CGAAGCGTTTGGATTCTGAA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGAATCTGAAACA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CGAAGCGTTTGGATTCTGAAA..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTAAAACA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAATA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAACTCCTACGCTTTACT............................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
..............................................GATCTTTAGAATTCCTACGCTTTACCG........................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0
..................................................TTTAGAATTCTTACGCTTTACCG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAAATCCTACGCTTTACC............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TTTAGAATTCATACGCGTTACC............................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTAGATTCTGAAAC.................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..................................................TGTAGAATTCCTACGTTTTACCG........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGACTCTGAAA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................TTGTGGGTGCTGCAGAGT.................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AAGGCGTTTGGATTCTGAAAC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATCCCTACGCTTTAC............................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0
..................................................TTTAGAATTCCTACGCTCTACCC........................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1
.........................................................................................GCAAAGCGTTTGGATTCTCAAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGTATTCTGA....................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTACAATTCCTACGCTTTAC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTACTACGCTTTAC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGAA...................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGACAC.................................................... 22 1 1 1.00 1 0 0 0 0 0 1
..................................................TTTGGAATTCCTACGCTTTACCG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................GTGGCATACGAAATTCGT.......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGAATTCTGAAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................GTGGAATACGAAATTCGG.......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
..................................................TTCAGAATTCCTACGTTTTACC............................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................CGTTTGGATTCTGAAACA................................................... 18 1 2 1.00 2 2 0 0 0 0 0
..................................................TTTAGAATTCCAACGCTTTACC............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TCAAAGCGTTTGGATTCTGAAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCATACGCTTTACA............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTAAGCTTTAC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCCGAAACT................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGATTTACG............................................................................................ 22 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................CAAAACGTTTGGATTCTGAAACA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.................................................ATTTAGAATTCCTACGCTTTACC............................................................................................ 23 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................CAAAGCGTTTTGATTCTGAAACC................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTGCGCTTTAC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CTAAGCGTTTGGATTCTGAAAC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTT........................................................ 18 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAGACC................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAACC.................................................... 22 1 1 1.00 1 0 0 0 1 0 0
........................................................................GTGCCATACGAAATTCGG.......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
..................................................TTGAGAATTCCTACGCTTTAGC............................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0
.................................................CTCTAGAATTCCTACGCTTTACC............................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0
..................................................TATAGAATTCCTACGCTTTACCG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TTTAGAATTCCCACGCTTTACCG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CTTAGAATTCCTACGCTTTACCG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................GGAAAGCGTTTGGATTCTGAAAC.................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...............................................GATTTTAGAATTCCTACGCTTTAC............................................................................................. 24 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTGAATTCTGAAAA.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGAATTCTGAAA..................................................... 21 1 1 1.00 1 0 0 0 0 1 0
..................................................TTTAGAATTACTACGCTTTA.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
........................................................................GTGGCATATGAAATTCGG.......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAAA.................................................... 23 1 1 1.00 1 0 0 0 0 1 0
..................................................TTTAGAATTCCTACGCGTTACA............................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTATGAAA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTGCTACGCTTTACC............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TAAAGCGTTTGGATTCTGAAAA.................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..................................................TTTAGAATTCATACGCTTTACCG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATCCTGAAAA.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGCAAC.................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..................................................TTTACAATTCCTACGATTTACC............................................................................................ 22 2 1 1.00 1 0 0 0 0 0 1
..............................................GGTCTTTAGAATTCCTACGCTTTACC............................................................................................ 26 3 1 1.00 1 0 1 0 0 0 0
..................................................TCTAGAATTCCTACGCTTTAC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...................................................CTAGAATTCCTACGCTTTACC............................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................CCAAGCGTTTGGATTCTTAAACT................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGAATTCTGAAACA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGCATTCCTACGCTTTACC............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCATAAGCTTTACCG........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTAC.............................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTGGAATTCCTACGCTTTA.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCATTACC............................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
..................................................TTTAGAATTCCTACGCTTTAACGT.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTTCC............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0
........................................................................GTGGCATCCGAAATTCGG.......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGATTTACA............................................................................................ 22 2 1 1.00 1 0 0 0 1 0 0
.........................................................................................GCAAAGAGTTTGGATTCTGAAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAGC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................AGCGTTTGGATTCTTAAACA................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAAAATTCCTACGCTTTACC............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................GTGGCATACGAAATCCGG.......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTAGGCTTTACC............................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................AACGCGTTTGGATTCTGAA...................................................... 19 1 1 1.00 1 1 0 0 0 0 0
...................................................TTAGAATTCCTACGCTTTA.............................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................CAAGCGTTTGGATTCTGAAACT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCCACGCTTTAC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGAGTTTGGATTCTG........................................................ 18 1 1 1.00 1 1 0 0 0 0 0
..................................................TGTTGAATTCCTACGCTTTACCG........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGTGTTTGGATTCTGAA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTGGACTTCCTACGCGTTACC............................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGGTTGGATTCTGAAACT................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................CAAGCGTTTGGATTCTGAAAC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAAG.................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTTCT............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAACAA.................................................. 25 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGACTCTGAAAC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGCAATA................................................... 23 3 1 1.00 1 0 0 0 1 0 0
..................................................TTTAGAATCCCTACGCTTTACCG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCAACGCTTTAAC............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
........................................................................GTGGCATACGAAATTCCG.......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTCCGCTTTACA............................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TTTAGAATTCCTATGCTTTACCG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGCAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACCCTTTACCG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACCCTTTAC............................................................................................. 21 1 1 1.00 1 0 0 0 0 0 1
..........................................................................................CAAAGCGTTTGGATTCTGGAA..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...................................................TTAGAATTCCTACGCTTTACCG........................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTCAAA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CTAAGCGTTTGGATTCTGAAA..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTAAAAC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCATTTGGATTCTGGAACA................................................... 23 3 1 1.00 1 0 0 0 0 1 0

Anti-sense strand reads

TTGTGTTTATAGTTTAGATACCGTTATTATTTAACACCCACGACGTCTCAAAATCTTAAGGATGCGAAATGGCACCGTATGCTTTAAGCCGTTTCGCAAACCTAAGACTTTGAGATGGCTAGGTAATAGTATAATAATTGTTACTTTTGTGATTATCCAATTCG

*************************************(((((.....(((((((((((((((..(((((((.(((..............))).)))))))..)))))))))))))))....)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V040

embryo

 V107

male body		 M055

female body
....................................................................ATGGCACCGTATGCATCTA............................................................................. 19 3 5 0.20 1 1 0 0
............................ATTTACCACCCACGAAGACTC................................................................................................................... 21 3 5 0.20 1 0 1 0
............................................................GATGCGTAATGGCGCCGA...................................................................................... 18 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4690:11188734-11188897 + der_28 confident AACACAAAT----ATCAAATCTATGGC------AATAATAAATTG---------------------TGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCA------TATTATTAA----CAATGAAAACA------------CTAATAG---------------------GTT---------------AAGC------
droYak3 X:10049068-10049241 - dya_14 confident AGCACAACTATTTATCAAATCTATGGC------AGTTAAAAATTG---------------------TGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACCATATTATTAA----CAATGAAAACA------------CTAATGG---------------------GTT---------------AAGG------
droSec2 scaffold_37:439513-439676 - dse_27 confident GAGACGCTT----ATTAAATCTATGGC------AATATTAAATTG---------------------TGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCA------TGTTATTAA----CAATGAAAACA------------CTAATAG---------------------GTT---------------AAGG------
droSim2 x:15031296-15031458 - dsi-mir-927 Known_mirbase A-CACGCTT----ATTAAATCTATAGC------CATATTAAATTG---------------------TGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCA------TGTTATTAA----CAATGAAAACA------------CTAATAG---------------------GTT---------------AAGG------
dm3 chrX:15859939-15860110 - dme-mir-927 Known_mirbase CAAGCGATTATTAATTAAATCTATGGC------AATATTAAATTG---------------------TGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCA------TGTTAAAAAAAAACAATACAAACA------------CTAATAG---------------------GTT---------------AAGG------
droEug1 scf7180000409111:14041-14213 + TGTTAAGGT----ATCAAGTCTACAGAACTA--TATATTAAATTGTTATAAATG-------CAGC-TGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAAGTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCGTTATCT------TTTTATTAA----CAATAAAACAA------------TCCATA--------------------------------------------------
droBia1 scf7180000302126:1157178-1157329 + A-------T----ATCTTATCTACCGA------TATGTTAAATTGTTAAAAACA-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCC------CTTGATTAA----CAATAA-------------------------------------------------------------------------
droTak1 scf7180000415169:54690-54884 + GG---------------------------------TATCAAATTGTTATAAATG-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCT------TTTAATTAA----CAATAAAA-CAAG----------GT-TT--TAATGGGTCACAAACTAATTGGTTTCCTGTTAAAATGCGAAGGCGGAGC
droEle1 scf7180000491044:230814-230942 + ------------------------------------------------------------------TGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAGTCCATTATCT------TTTTATTCA----AAAATAAAACAAG----------CTAAAAG---------------------TTT---------------AA--------
droRho1 scf7180000777033:165050-165218 + AA-------------------------------------AAAATGTTACAAATGCGGCTTGCACCTTGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAATCCATTATCT------TTTTATTAA----CAATAAAAC-AAGCAAGAGCGCATCAATCA---------------------GTT---------------AAAG------
droFic1 scf7180000454038:1133616-1133742 - C------------------------------------------TT---------------------TGGGTATTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCT------TTTTATTAA----CAAGAAA-AAA------------CAAAAA-----------------------TT---------------G--T------
droKik1 scf7180000302230:275951-276065 - -------------------------------------------------------------------GGGCGTTGTAGGGCTTTAGAATTCCTACGCTTTACCGTGGCA-TTCGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGCGTCCGTGA-----------------G----TAAAGAAAATT------------TGAAAAG---------------------GAT---------------G--T------
droAna3 scaffold_13250:3108660-3108799 + dan_16 confident ATCATA----------------------------------AAAAA---------------------AGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAAT-GTG-TTTTCA----TAAATACAACA------------CAAAAAG---------------------TTT-------------------------
droBip1 scf7180000393580:5805-5893 - -------------------------------------------------------------------GGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGC--TATGATATTTGGCAAAGCGTTTGGATTCTGGAACCCTACGTATTCATT------------------------------------------------------------------------------------------------------
dp5 Unknown_group_79:17452-17532 + dps-mir-927 Known_mirbase -------------------------------------------------------------------GGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTA----------------------------------------------------------------------------------------------------------------
droPer2 scaffold_192:48579-48659 + dpe_29 confident -------------------------------------------------------------------GGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTA----------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004590:2521578-2521694 - dwi_12 confident --------------------------------------------------------------------------GTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCAC-ATAG------CAACATTGA----CTAAAGAGCTA------------CCAAAAG---------------------GAT---------------A---------
droVir3 scaffold_12970:3343514-3343609 - dvi-mir-927 Known_mirbase -------------------------------------------------------------------------------GTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTCG-----------------GTAA----CAACAAAAACA------------GAAAT---------------------------------------------------
droMoj3 scaffold_6473:7790782-7790845 - -------------------------------------------------------------------------------GTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAAC--------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:10526880-10526997 + CACATAAATAATAGAATGATTTAAAGG----ATAGTAGTT---------------------TACCGTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAAC--------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AACACAAAT----ATCAAATCTATGGC------AATAATAAATTG---------------------TGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCA------TATTATTAA----CAATGAAAACA------------CTAATAG---------------------GTT---------------AAGC------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2215174.0051746191261167986029690
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC....................................................................................................................221931.00931441588031395790
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACA...................................................................................................................231791.00791631611566990
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................211562.00562463435734370
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................231256.00256321721141900
.......................................................................................................GTGGCA-TACGAAATTCGG..........................................................................................................................................181233.002331061012150
..........................................................................................................................CAAAGCGTTTGGATTCTGAAA.....................................................................................................................211171.001711174171410
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAA.....................................................................................................................22185.008502342740
..........................................................................................................................CAAAGCGTTTGGATTCTGAA......................................................................................................................20180.008020103740
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACT...................................................................................................................23171.007101001690
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................18156.005610100540
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAA....................................................................................................................22156.005610503470
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................21145.004537500030
..........................................................................................................................CAAAGCGTTTGGATTCTGA.......................................................................................................................19144.004420201390
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAC....................................................................................................................23144.0044011741210
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................20140.004031200340
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................22128.002804010230
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACG...................................................................................................................23117.001700000170
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAA..................................................................................................................24116.001610103110
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAA...................................................................................................................23115.001520000130
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC....................................................................................................................21115.00154010190
..........................................................................................................................CAAAGCGTTTGGATTCTGT.......................................................................................................................19114.001400100130
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACC...................................................................................................................23112.001200101100
.......................................................................................................GTGGCA-TACGAAATTCGGT.........................................................................................................................................19111.00110002090
.........................................................................................................................GCAAAGCGTTTGGATTCTGAA......................................................................................................................21110.00101000180
.........................................................................................................................GCAAAGCGTTTGGATTCTGA.......................................................................................................................2018.0080000170
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................2018.0082300030
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................1918.0080000080
...........................................................................................................................AAAGCGTTTGGATTCTGAAACA...................................................................................................................2217.0070000160
.................................................................................TTTAGAATTCCTACGCTTTACCA............................................................................................................................................................2315.0052000030
.................................................................................TTTAGAATTCCTACGCTTTACT.............................................................................................................................................................2215.0054000010
.................................................................................TTTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................2415.0050000140
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAT....................................................................................................................2214.0040000040
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................2014.0043000010
.................................................................................TTTAGAATTCCTACGCTTTAA..............................................................................................................................................................2113.0030001020
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................1813.0030000030
............................................................................................................................AAGCGTTTGGATTCTGAAAC....................................................................................................................2013.0030001020
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAACA...................................................................................................................2413.0030000120
.................................................................................TTTAGAATTCCTACGCTTTACCT............................................................................................................................................................2312.0020100010
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAG....................................................................................................................2212.0020010010
..........................................................................................................................CAAAGCGTTTGGATTCTGAAT.....................................................................................................................2112.0020000020
...........................................................................................................................AAAGCGTTTGGATTCTGAAA.....................................................................................................................2012.0020000110
..........................................................................................................................CAAAGCGTTTGGATTCTGAAG.....................................................................................................................2112.0020000110
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAACA..................................................................................................................2411.0010000010
...........................................................................................................................AAAGCGTTTGGATTCTGA.......................................................................................................................1811.0010000010
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAG.....................................................................................................................2211.0010000010
..........................................................................................................................CAAAGCGTTTGGATTCTGTT......................................................................................................................2011.0010000010
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAT..................................................................................................................2411.0010000010
...........................................................................................................................AAAGCGTTTGGATTCTGAAACT...................................................................................................................2211.0010000010
..........................................................................................................................CAAAGCGTTTGGATTCTGAAATA...................................................................................................................2311.0010000010
..........................................TTG---------------------TGGGTGCTGCAGAGT...................................................................................................................................................................................1811.0010000010
.................................................................................TTTAGAATTCCTACGCTTTACCC............................................................................................................................................................2311.0010000010
...........................................................................................................................AAAGCGTTTGGATTCTGAA......................................................................................................................1911.0010000010
.......................................................................................................GTGGCA-TACGAAATTCGT..........................................................................................................................................1811.0010000010
...............................................................................................................................CGTTTGGATTCTGAAACA...................................................................................................................1821.0020000020
..........................................................................................................................CAAAGCGTTTGGATTCTT........................................................................................................................1811.0010000010
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAA....................................................................................................................2311.0010000100
.................................................................................TTTAGAATTCCTACGCTTAC...............................................................................................................................................................2011.0010000010
..................................................................................TTAGAATTCCTACGCTTTA...............................................................................................................................................................1911.0010000010
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAG....................................................................................................................2311.0010000010
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAACAA..................................................................................................................2511.0010000010
..................................................................................TTAGAATTCCTACGCTTTACCG............................................................................................................................................................2211.0011000000
droYak3
AGCACAACTATTTATCAAATCTATGGC------AGTTAAAAATTG---------------------TGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACCATATTATTAA----CAATGAAAACA------------CTAATGG---------------------GTT---------------AAGG------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................22117059.001705911576305471274109266160100
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC....................................................................................................................2212983.00298317123810051336136430000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAA.....................................................................................................................2112019.002019189742021567130100
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................2111189.001189101834782144210000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAA.....................................................................................................................221887.0088786401501430000
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................231637.0063737324215116800000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACT...................................................................................................................231377.00377342010031750000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACA...................................................................................................................231368.0036826821261146230000
..........................................................................................................................CAAAGCGTTTGGATTCTGAA......................................................................................................................201256.0025622716061420000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAA....................................................................................................................221224.002242091503420000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAC....................................................................................................................231119.001193807901100000
..........................................................................................................................CAAAGCGTTTGGATTCTGA.......................................................................................................................191116.001161011002930000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAA......................................................................................................................211116.001161131001100000
.......................................................................................................GTCGCA-TACGAAATTCGG..........................................................................................................................................18190.0090780821100000
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................21144.00447221220100000
.................................................................................TTTAGAATTCCTACGCTTTACCT............................................................................................................................................................23127.0027250100100000
..................................................................................TTAGAATTCCTACGCTTTACCG............................................................................................................................................................22126.0026144700100000
.........................................................................................................................GCAAAGCGTTTGGATTCTGA.......................................................................................................................20121.0021181000200000
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC....................................................................................................................21119.001994230010000
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................19118.0018180000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACC...................................................................................................................23117.0017140100200000
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................22117.0017201401000000
..........................................................................................................................CAAAGCGTTTGGATTCTGG.......................................................................................................................19116.0016160000000000
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................20116.0016102102100000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAA...................................................................................................................23115.0015140000100000
..........................................TTG---------------------TGGGCGCTGTAGAGT...................................................................................................................................................................................18114.0014110001200000
............................................................................................................................AAGCGTTTGGATTCTGAAAC....................................................................................................................20114.0014130000100000
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................18112.001240003500000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAA..................................................................................................................2419.00980000100000
.................................................................................TTTAGAATTCCTACGCTTTACT.............................................................................................................................................................2219.00940400100000
.................................................................................TTTAGAATTCCTACGCTTTACCC............................................................................................................................................................2319.00970200000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACG...................................................................................................................2318.00880000000000
..........................................................................................................................CAAAGCGTTTGGATTCTT........................................................................................................................1817.00760000100000
.................................................................................TTTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................2417.00710102300000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAT.....................................................................................................................2116.00650000100000
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................2016.00610500000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAT....................................................................................................................2216.00660000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGG.......................................................................................................................2015.00550000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAG....................................................................................................................2215.00540001000000
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................1815.00550000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAG.....................................................................................................................2115.00550000000000
.........................................ATTG---------------------TGGGCGCTGTAGAGT...................................................................................................................................................................................1915.00530001100000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAC.....................................................................................................................2114.00420000200000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAAA..................................................................................................................2414.00440000000000
.................................................................................TTTAGAATTCCTACGCTTTACCA............................................................................................................................................................2314.00430100000000
...............................................................................GTTTTAGAATTCCTACGCTTT................................................................................................................................................................2114.00440000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAC......................................................................................................................2014.00440000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAT......................................................................................................................2014.00430000100000
.................................................................................TTTAGAATTCCTACGCTTTG...............................................................................................................................................................2013.00320000100000
...........................................................................................................................AAAGCGTTTGGATTCTGAAA.....................................................................................................................2013.00311000100000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACTT..................................................................................................................2413.00330000000000
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................2013.00312000000000
............................................................................................................................AAGCGTTTGGATTCTGAAACA...................................................................................................................2113.00330000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTG........................................................................................................................1913.00310000200000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAG.....................................................................................................................2213.00330000000000
...............................................................................GTTTTAGAATTCCTACGCTTTA...............................................................................................................................................................2213.00330000000000
.............................................................................................................................AGCGTTTGGATTCTGAAACCC..................................................................................................................2113.00330000000000
.................................................................................TTTAGAATTCCTACGCTTTAA..............................................................................................................................................................2112.00220000000000
.....................................................................................................................TTCGGCAAAGCGTTTGGATTCTGAAAC....................................................................................................................2712.00220000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAT.....................................................................................................................2212.00220000000000
....................................................................................................................ATTCGGCAAAGCGTTTGGATTCTGAAAC....................................................................................................................2812.00220000000000
.................................................................................TTTAGAATTCCTACGCTTTACG.............................................................................................................................................................2212.00201100000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAT...................................................................................................................2312.00220000000000
...................................................................................................................AATTCGGCAAAGCGTTTGGATTCTGAAA.....................................................................................................................2812.00220000000000
............................................................................................................................AAGCGTTTGGATTCTGAAA.....................................................................................................................1912.00220000000000
.............................................................................................................................AGCGTTTGGATTCTGAAA.....................................................................................................................1812.00220000000000
.................................................................................TTTAGAATTCCTACGCTC.................................................................................................................................................................1811.00110000000000
............................................................................................................................AAGCGTTTGGATTCTGAAAAA...................................................................................................................2111.00110000000000
..........................................TTG---------------------TGGGCGCTGTAGAGG...................................................................................................................................................................................1821.00210000100000
.............................................................................................................................AGCGTTTGGATTCTGAAAC....................................................................................................................1911.00110000000000
.............................................................................................................................AGCGTTTGGATTCTGAAACC...................................................................................................................2011.00110000000000
....................................................................................AGAATTCCTACGCTTTACC.............................................................................................................................................................1911.00100100000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAC......................................................................................................................2111.00110000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAC.....................................................................................................................2211.00110000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAG......................................................................................................................2111.00110000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAA......................................................................................................................1911.00110000000000
droSec2
GAGACGCTT----ATTAAATCTATGGC------AATATTAAATTG---------------------TGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCA------TGTTATTAA----CAATGAAAACA------------CTAATAG---------------------GTT---------------AAGG------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2211367.0013672712684986
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC....................................................................................................................221750.007502956229436
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACA...................................................................................................................231368.0036832371271
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................211175.001751511158
..........................................................................................................................CAAAGCGTTTGGATTCTGAAA.....................................................................................................................211150.0015032017110
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................231147.0014734013100
..........................................................................................................................CAAAGCGTTTGGATTCTGA.......................................................................................................................19154.005434047
..........................................................................................................................CAAAGCGTTTGGATTCTGAA......................................................................................................................20139.003901335
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAA.....................................................................................................................22138.0038241121
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAC....................................................................................................................23133.003311238
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAA....................................................................................................................22129.002911522
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACT...................................................................................................................23123.002300419
.......................................................................................................GTCGCA-TACGAAATTCGG..........................................................................................................................................18118.001800108
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................20116.001611014
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................21116.001614002
.........................................................................................................................GCAAAGCGTTTGGATTCTGA.......................................................................................................................20114.001403110
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC....................................................................................................................21114.00144046
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................18113.001300013
.........................................................................................................................GCAAAGCGTTTGGATTCTGAA......................................................................................................................21112.001201110
.................................................................................TTTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................24112.001200012
..........................................................................................................................CAAAGCGTTTGGATTCTGT.......................................................................................................................19110.00100109
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAA...................................................................................................................2318.0080107
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................2014.0043001
.........................................................................................................................GCAAAGCGTTTGGATTCTG........................................................................................................................1914.0040004
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACG...................................................................................................................2314.0040112
...........................................................................................................................AAAGCGTTTGGATTCTGAAACA...................................................................................................................2213.0031011
........................................AATTG---------------------TGGATGCTGTAGAGT...................................................................................................................................................................................2013.0030003
..........................................TTG---------------------TGGATGCTGTAGAGT...................................................................................................................................................................................1812.0020020
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAA..................................................................................................................2412.0020002
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACC...................................................................................................................2312.0020011
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAT....................................................................................................................2212.0020020
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................1912.0020002
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAT.....................................................................................................................2212.0020011
...........................................................................................................................AAAGCGTTTGGATTCTGAAAAA...................................................................................................................2211.0010001
.................................................................................TTTAGAATTCCTACGCTTTACCC............................................................................................................................................................2311.0011000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAACA...................................................................................................................2411.0010001
................................................................................TTTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2311.0011000
...........................................................................................................................AAAGCGTTTGGATTCTGAAA.....................................................................................................................2011.0010001
...............................................................................................................................CGTTTGGATTCTGAAACA...................................................................................................................1811.0010001
..................................................................................TTAGAATTCCTACGCTTTACCG............................................................................................................................................................2211.0011000
.................................................................................TTTAGAATTCCTACGCTTTACCGTT..........................................................................................................................................................2511.0010001
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAA....................................................................................................................2311.0010001
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................1811.0010001
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................2211.0010001
..........................................................................................................................CAAAGCGTTTGGATTCTGAAG.....................................................................................................................2111.0010001
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAACT...................................................................................................................2411.0010001
.......................................................................................................GTCGCA-TACGAAATTCGT..........................................................................................................................................1811.0010001
.................................................................................TTTAGAATTCCTACGCTTTACG.............................................................................................................................................................2211.0010001
..........................................................................................................................CAAAGCGTTTGGATTCTGTT......................................................................................................................2030.3310001
droSim2
A-CACGCTT----ATTAAATCTATAGC------CATATTAAATTG---------------------TGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCA------TGTTATTAA----CAATGAAAACA------------CTAATAG---------------------GTT---------------AAGG------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................22159696.0059696552644391953342814801813143165115201023
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC....................................................................................................................2217754.0077546461110107990453181702000010
..........................................................................................................................CAAAGCGTTTGGATTCTGAAA.....................................................................................................................2115516.0055165025104358009101070100010
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................2114354.004354415220463111221460601000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAA.....................................................................................................................2211771.00177113854034300100000200000
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................2311655.00165512651372211273102411100000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACA...................................................................................................................2311066.0010669452279100014301100000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAA....................................................................................................................221812.00812775112500000100000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAA......................................................................................................................201575.00575520929001210220000000
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................181458.00458600001338500000000000
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................201294.0029486002419900201000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAA......................................................................................................................211260.0026023651700100100000000
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................191250.0025015110049400000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACT...................................................................................................................231230.0023020631700000120100000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAC....................................................................................................................231187.0018713115110300000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGA.......................................................................................................................191156.0015614203011000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACC...................................................................................................................23184.00843204004800000000000
.................................................................................TTTAGAATTCCTACGCTTTACCT............................................................................................................................................................23177.0077770000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAA...................................................................................................................23174.0074701300000000000000
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................21169.00692710113900000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGA.......................................................................................................................20151.0051490000100100000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAA..................................................................................................................24135.0035272410000100000000
..........................................................................................................................CAAAGCGTTTGGATTCTT........................................................................................................................18131.0031310000000000000000
..................................................................................TTAGAATTCCTACGCTTTACCG............................................................................................................................................................22128.0028220100500000000000
.................................................................................TTTAGAATTCCTACGCTTTACT.............................................................................................................................................................22127.0027222100000020000000
.......................................................................................................GTGGCA-TACGAAATTCGG..........................................................................................................................................18127.0027406000000001700000
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................18125.0025900001400101000000
.................................................................................TTTAGAATTCCTACGCTTTACCA............................................................................................................................................................23122.0022200200000000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAA....................................................................................................................23119.0019190000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGG.......................................................................................................................19119.0019190000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACG...................................................................................................................23118.0018150300000000000000
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................22116.0016150100000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAG.....................................................................................................................21115.0015140100000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC....................................................................................................................21114.0014140000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAT.....................................................................................................................21113.0013130000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAT....................................................................................................................22113.0013130000000000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTG........................................................................................................................19111.0011100000100000000000
............................................................................................................................AAGCGTTTGGATTCTGAAAC....................................................................................................................20110.001091000000000000000
.............................................................................................................................AGCGTTTGGATTCTGAAAC....................................................................................................................19110.0010100000000000000000
.............................................................................................................................AGCGTTTGGATTCTGAAA.....................................................................................................................18110.0010100000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAT......................................................................................................................2019.00990000000000000000
.................................................................................TTTAGAATTCCTACGCTTTAA..............................................................................................................................................................2119.00990000000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAAA.....................................................................................................................2018.00862000000000000000
..............................................................................................................................GCGTTTGGATTCTGAAAC....................................................................................................................1818.00880000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACCC............................................................................................................................................................2317.00760100000000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGG.......................................................................................................................2017.00770000000000000000
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................2016.00631000200000000000
.................................................................................TTTAGAATTCCTACGCTTTACG.............................................................................................................................................................2216.00660000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAAA..................................................................................................................2416.00660000000000000000
..................................................................................TTAGAATTCCTACGCTTTA...............................................................................................................................................................1916.00600000600000000000
.........................................................................................................................GCAAAGCGTTTGGATTCT.........................................................................................................................1815.00540000100000000000
.................................................................................TTTAGAATTCCTACGCTTTACCGA...........................................................................................................................................................2415.00550000000000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTT........................................................................................................................1915.00550000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................2414.00430000100000000000
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................2014.00420000200000000000
.................................................................................TTTAGAATTCCTACGCTTC................................................................................................................................................................1914.00440000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGT.......................................................................................................................1914.00440000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAG......................................................................................................................2013.00330000000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAAACA...................................................................................................................2213.00330000000000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAT....................................................................................................................2313.00330000000000000000
............................................................................................................................AAGCGTTTGGATTCTGAAA.....................................................................................................................1913.00320100000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACTT..................................................................................................................2413.00330000000000000000
.................................................................................TTTAGAATTCCTACGCTTTAT..............................................................................................................................................................2112.00220000000000000000
........................................AATTG---------------------TGGATGCTGTAGAGT...................................................................................................................................................................................2012.00220000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAG....................................................................................................................2212.00220000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACCC..................................................................................................................2412.00200000200000000000
......................................................................................................................TCGGCAAAGCGTTTGGATTCTGAAA.....................................................................................................................2512.00220000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAT..................................................................................................................2412.00220000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACAA............................................................................................................................................................2312.00210000010000000000
.......................................................................................................GTGGCA-TACGAAATTCGGA.........................................................................................................................................1912.00200100000000100000
...........................................................................................................................AAAGCGTTTGGATTCTGAAAA....................................................................................................................2112.00220000000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAAACT...................................................................................................................2212.00220000000000000000
....................................................................................AGAATTCCTACGCTTTACC.............................................................................................................................................................1912.00200000200000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAT...................................................................................................................2312.00210100000000000000
................................................................................................................................GTTTGGATTCTGAAACA...................................................................................................................1712.00200000000002000000
.................................................................................TTTAGAATTCCTACGCTTA................................................................................................................................................................1912.00220000000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAAACC...................................................................................................................2212.00200000200000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAC......................................................................................................................2012.00220000000000000000
..............................................................................................................................GCGTTTGGATTCTGAAAA....................................................................................................................1811.00110000000000000000
............................................................................................................................AAGCGTTTGGATTCTGAAAAA...................................................................................................................2111.00110000000000000000
.....................................................................................................................TTCGGCAAAGCGTTTGGATTCT.........................................................................................................................2211.00101000000000000000
............................................................................................................................AAGCGTTTGGATTCTGAA......................................................................................................................1811.00110000000000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAT.....................................................................................................................2211.00110000000000000000
.................................................................................TTTAGAATTCCTACGCT..................................................................................................................................................................1711.00100000000001000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAG.....................................................................................................................2211.00110000000000000000
.................................................................................TTTAGAATTCCTACGCTTTG...............................................................................................................................................................2011.00110000000000000000
................................................................................TTTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2311.00110000000000000000
.......................................................................................................................CGGCAAAGCGTTTGGATTCTGT.......................................................................................................................2211.00110000000000000000
dm3
CAAGCGATTATTAATTAAATCTATGGC------AATATTAAATTG---------------------TGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCA------TGTTAAAAAAAAACAATACAAACA------------CTAATAG---------------------GTT---------------AAGG------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................22179279.00792790000274400023517103229713140000000073921613881492182550520000000000000019001000052200000000000000000211398580210170011373779489820745412015104696582623005021191914576661737214766731483064341529198742120413519151273000000000200000010000000010000000000327443530295317407972146199514821570233447473924838119419000055660000000000000000310000000000302205017118265318453523812004526028306187101125638210000001429001470000010100000301000000000516581674147817627162300004202745100000100002000015125224818111503981106100
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................21110556.001055600007000001100443020000000082251682232743500000000000000100000000000000000000000000064323500000000004516115160124279000122031020511150114132804135116417519309213000000000000000000000000000000005000329180103351668923030318523326613588722810000063400000000000000001000000000000003511133054126000032014697100161660160000032004900100001100000000000000001121251263390000010000603112000010000000000313800000090122400
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC....................................................................................................................2219236.009236000060010301003002000000000514915217201000000000000100000000044000000000000000000000019002300032725163136501572130001000051150235741011126116512410424200000000000010000000000000000000000536140202731538196111691616582972800000750000000000000000000000000000402220114102000001007848034110410032770140000011600380000001100000001000002102354310338285967811376164010016339191000002200013700044207379295245414337026100
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................2314783.00478300001030001010000011000000001519161451681200000000000000300000000010000000000000000000002400000001123302253533573090000000120100317633013082087196915912800000000000000000000000000000000000026434302241916234189211572123741354400000055200000000000000000000000000000001111104121001000025012113000635020000026007000000000000000000000000019251562021010000000220000020000000000115010340061012200
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACA...................................................................................................................2314663.0046630000000000000010000000000000000000000000000000001000000000000000000000000000000020000000000300620000090000000000100011913010549030650000000000000000000000000000000000007491042001532025652312530000053000000000100000000000000000000000202000000047160081607288000182708000001270090000000011000003000000001327291203224512758287400007711574400000000000140002316946029513643067012400
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACATC.................................................................................................................2511817.00181700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001270547000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAA.....................................................................................................................2111568.0015680000200000000000000000000000100000000000000000000000000021000000000000000000000000000000001600222000004200000100000000530100360401200000000000000000010100000000000000045370210061822111916320000030000000000000000000000000000010010000000000010001170310100003607000001800600010000000010010000000101338970780461392001003523637000020000000100184111951591003813600
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................2011149.001149000010000000000000000000000222372945110000000000000020000000000000000000000000000010600000000005003000001260000000100000014510001702333621000000000000000000000000000000000000391320435224235038312704177800000630000000000000000000000000000000000000020000000010001700019000000020040000000000000000000000000169245700000000000100000000000000000001400000050900
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................211697.00697000010000010000000000000000246443936110000000000000000000000000000000000000000000000100000000001002000100170000000000000113414045150132236000000000000000000000000000000000000255403655282539474571116410000022000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000010071100000000000000000000000000000100000000300
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................221625.0062500001010000001000000000000000000000000000000000001000000000000000000000000000000011000000000001110000001600000000000031107318071548017023220000000000000000000000000000000000001014010521122813116604053380000069000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000031230000000000000000000000000000000300000020200
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAA.....................................................................................................................221603.00603000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000020010000000000000000001003010303074000000000000000000000000000000000000102009002151811222800000060000000000000000200000000000000000000000000000043002600023010000070030000001010000100000000001243216412361244000001601714002000000010000021234120703103500
.......................................................................................................GTGGCA-TACGAAATTCGG..........................................................................................................................................181586.005860000000000000000010000000000000000000000000000000000000012000000000000000000000000000000000401190310001900000000010010560300450602500000000000000000000000000000000000082201400022060802240000000000000000000000020000000000000000000000000000082601190014501000005008000000000000000000000000057302150190920001003034000000000000000008101000360300
.................................................................................TTTAGAATTCCTACGCTTTACT.............................................................................................................................................................221466.004660000160000001000001000000000000000000000000000000000000000000000000000000000000001000000000002402111100003600010000000000122120261212006319000000000000000000000000000000000000102502044529938013191410000010000000000000000000000000000000000000100000010000000210001200000002001000000000000000000000000020120100000000000000000000000000000200000000200
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................191400.0040000000000000000000000000000001789405000000000000000000000000000000000000000000000010000000000000100000070000000000000012081000009371015000000000000000000000000000000000000155009110588102128620800000230000000000000000000000000000000000000000000000000000000003010000000030000000000000000000000000343140000000000001000000000000000000200000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAA....................................................................................................................221399.00399000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000010100001200000000000000000100040401300000000000000001000000000000000000018230900270111130370000003000000000000000020000000000000000000000000013000010010000320000000400000000000010000000000000002319181904570000009176000000000000000018321321030400
..........................................................................................................................CAAAGCGTTTGGATTCTGAA......................................................................................................................201337.003370000100000000000000000000000200000000000000000000000000000000000000000000000000100000000000200400000000000000000000011000002010210000000000000000000000000000000000009120110241634224000003000000000000000000000000000000000000001000000004202400002001000006003000000000000000000000000031171710041210000080440000010000000000499901430120800
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACT...................................................................................................................231273.002730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000002604001101020400000010000000001000000000000000000001000000000000000010002000013000000060020000000000000000000000000271010230624200000516200000000000000003106220130100700
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAC....................................................................................................................231260.0026000000000000000000000000000000183010000000000000010000000000000000000000000000000000000000000000000000300000000001000010100020307600000000000000000000000000000000000089015000619011400000000000000000000000000000000000000000001000000000052001110000201000002003000000000000000000000001048680365140000040130000000000000000136104110110400
..........................................................................................................................CAAAGCGTTTGGATTCTGA.......................................................................................................................191252.00252000000000000000000000000000030020000000000000000000000000000000000000000000000000000000000000020000000000000000000000300003100201000000000000000000000000000000000000613041042103646900000500000000000000000000000000000000001000000000000410014000150000000200300000000000000000000000001645110111000000504000000000000100002541910043020600
.........................................................................................................................GCAAAGCGTTTGGATTCTG........................................................................................................................191151.001510000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400320050021308000000000000000000000000000000000000000000000000000000000140000400000000001000000000000000000000000075514000000000000220000000000000000041100000180500
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAACATC.................................................................................................................261146.00146000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010145000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAA......................................................................................................................211126.0012600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000020001000000000000000000000000000000000000043020041000115000000400000000000000000000000000000000000000000000000000011000010000000300000000000000000000000000004116403000000003031000000101000100013231140080200
.................................................................................TTTAGAATTCCTACGCTTTACATC...........................................................................................................................................................241116.0011600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007541000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACCA............................................................................................................................................................231114.00114000020000101000000000000000000000000000000000000100000000000000000000000000000000000000000030010100001400000000000000110100020203500000000000000000000000000000000000043020010020411000000400000000000000000000000000000000000001000002623000000000000000000000000000000000000000000000000010000000000000000000000000000000000200000000000
.................................................................................TTTAGAATTCCTACGCTTTACCTC...........................................................................................................................................................241108.0010800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004364000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTAA..............................................................................................................................................................211104.00104000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000011000000000000001002031306086000000000000000000000000000000000000312010017000143141000005000000000000000000000000000000000000000000010000000100000000000000001000000000000000000000000000130000000000001000000000000000000100000000000
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................201102.00102000000000010000000000000000305511010000000000000000000000000000000000000000000000000000000000000000000100000000000000210100000014000000000000000000000000000000000000021703332125601241000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000100
.........................................................................................................................GCAAAGCGTTTGGATTCTGA.......................................................................................................................20196.009600000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000001000000200000000000000100000000310000000000000000000000000000000000000010011021021313000000100000000000000000000000000000000000000000000000000002000110000000000100000000000000000000000009105200100000002021000000000000000012120000050200
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAA..................................................................................................................24194.0094000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000002001000000000000000000000000000000000000000000000840400140103013000000100000000000000000000000000000000000000000001230001001100000010000010000000000000000000000000000030403300000001001000000000000000001300000000200
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAT..................................................................................................................24193.009300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000006820000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC....................................................................................................................21186.00860000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000007100401110506140000001000000000000000000000000000000000000000000000000000030000100000001001000000000000000000000000033220610000000103200000000000000000900100020100
..................................................................................TTAGAATTCCTACGCTTTACCG............................................................................................................................................................22182.008200000000000000000000000000021000000000000000000000000000000000000000000000000000000000000002012000000000000000000000310000000201120000000000000000000000000000000000002304022825112310000012000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100001030100
.................................................................................TTTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................24182.0082000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000001000000004011000000000000000000000000000000000000050100010200020000001000000000000000000000000000000000000000000000000000200000100000000001000000000000000000000000010558000100000000000000000000000000010110000301200
.................................................................................TTTAGAATTCCTACGCTTTACCGATC.........................................................................................................................................................26177.007700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................18176.0076000000000000000000000000000001010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000020000011000002000000000000000000000000000000000000000000000000000000000230000100000001000000000000000000000000000055121600010000000013000000000000000001200000030000
.................................................................................TTTAGAATTCCTACGCTTTACG.............................................................................................................................................................22169.006900001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000110100000000000000000000000000000000000000025022905110111071000004000000000000000000000000000000000000000000000000100000001001000000000000000000000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACC...................................................................................................................23168.0068000000000000000000000000000000000000000000000000000000006700000000000000000000000000000000000010000000000000000000001100000000000000000000000000000000000000000000000110000000112000000000000000000000000000000000000000000000000000000000000120000000000002000000000000000000000000000020120203200000701000000000000000000800001070500
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAA...................................................................................................................23167.00670000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000000000006401000203040200000010000000000000000000000000000000000000000000110000000000000000000020000000000100000000000000000831200010000001022000000000000000001501010000000
.................................................................................TTTAGAATTCCTACGCTTTAT..............................................................................................................................................................21162.00620000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000100000000000000000000000111000101000330000000000000000000000000000000000000160011042903320000003000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACCT............................................................................................................................................................23161.0061000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000120001000000000000000000000000000007068000000000000000000000000000000000000770200100011020000003000000000000000000000000000000000000000000012000000000101200000000002000000000000000000000000000100000000000000000000000000000000000000000100
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAT....................................................................................................................22154.00540000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001302001401010200000010000000000000000000000000000000000000000000210000001000000000000010000000000000000000000000000212401000000002020000000000000010011211000000100
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................20153.00530000000000000000010000000002000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000020000000000000000000000000000000000000230122370900100000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................18146.0046000000000000000010000000000004010000000000000000000000000000000000000000000000000000000000000010000001000000000000001200000000210000000000000000000000000000000000000000210114015407000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAAACA...................................................................................................................22146.00460000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000002000000000000000000000000000000000000000003200000200010100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000212701010000003020000000000000000001200000010000
.................................................................................TTTAGAATTCCTACGCTTTACCC............................................................................................................................................................23146.0046000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000014000000000000000100000006000000000000000000000000000000000000000450211110201330000001000000000000000000000000000000000000100000032000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000
.......................................................................................................GTGGCA-TACGAAATTCGGT.........................................................................................................................................19142.00420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000020000000000000000000000000020000100000000000000000000000000000000000000000101201520000000100000000000000000000410100040300
.................................................................................TTTAGAATTCCTACGCTTTATT.............................................................................................................................................................22140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000170010000000100000000000000000000000000000000000000000000000000000000000000120100023301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TTTTAGAATTCCTACGCTTTACC.............................................................................................................................................................23137.00370000300000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTAC...............................................................................................................................................................20134.0034000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000160200063702120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACG...................................................................................................................23126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000010000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000022420000000000000000000000000000000500001020100
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAACA...................................................................................................................24122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000000000012130220000000000000000000000000000301000010000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAA....................................................................................................................23122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000110100000100000000002000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000001100010000000000100000000000000000600000000100
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAT...................................................................................................................23121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200100000050000000000000000000000000000000000000000000000000042000000000000000000000000000000000000000000000000000100000000000001000000000000000000400000000000
droEug1
TGTTAAGGT----ATCAAGTCTACAGAACTA--TATATTAAATTGTTATAAATG-------CAGC-TGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAAGTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCGTTATCT------TTTTATTAA----CAATAAAACAA------------TCCATA--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
A-------T----ATCTTATCTACCGA------TATGTTAAATTGTTAAAAACA-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCC------CTTGATTAA----CAATAA-------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GG---------------------------------TATCAAATTGTTATAAATG-------CACCTTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCT------TTTAATTAA----CAATAAAA-CAAG----------GT-TT--TAATGGGTCACAAACTAATTGGTTTCCTGTTAAAATGCGAAGGCGGAGCSizeHit CountTotal NormTotal
No Reads
droEle1
------------------------------------------------------------------TGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAGTCCATTATCT------TTTTATTCA----AAAATAAAACAAG----------CTAAAAG---------------------TTT---------------AA--------SizeHit CountTotal NormTotal
No Reads
droRho1
AA-------------------------------------AAAATGTTACAAATGCGGCTTGCACCTTGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAATCCATTATCT------TTTTATTAA----CAATAAAAC-AAGCAAGAGCGCATCAATCA---------------------GTT---------------AAAG------SizeHit CountTotal NormTotal
No Reads
droFic1
C------------------------------------------TT---------------------TGGGTATTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCT------TTTTATTAA----CAAGAAA-AAA------------CAAAAA-----------------------TT---------------G--T------SizeHit CountTotal NormTotal
No Reads
droKik1
-------------------------------------------------------------------GGGCGTTGTAGGGCTTTAGAATTCCTACGCTTTACCGTGGCA-TTCGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGCGTCCGTGA-----------------G----TAAAGAAAATT------------TGAAAAG---------------------GAT---------------G--T------SizeHit CountTotal NormTotal
No Reads
droAna3
ATCATA----------------------------------AAAAA---------------------AGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAAT-GTG-TTTTCA----TAAATACAACA------------CAAAAAG---------------------TTT-------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2214574.004574372189738140362091
..........................................................................................................................CAAAGCGTTTGGATTCTGGAAC....................................................................................................................2212484.002484119288124842601321
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................211854.00854275017232294
..........................................................................................................................CAAAGCGTTTGGATTCTGGAACA...................................................................................................................231389.003894202332328
..........................................................................................................................CAAAGCGTTTGGATTCTGGAA.....................................................................................................................211199.0019911725026103
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................22189.008927430010
..........................................................................................................................CAAAGCGTTTGGATTCTGGA......................................................................................................................20187.008741021952
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................23183.00839910064
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................21149.004928120009
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................20148.004811103132
..........................................................................................................................CAAAGCGTTTGGATTCTGG.......................................................................................................................19148.00481007337
..........................................................................................................................CAAAGCGTTTGGATTCTGGAACT...................................................................................................................23145.00451004337
..........................................................................................................................CAAAGCGTTTGGATTCTGGAAA....................................................................................................................22135.00352300327
...........................................................................................................................AAAGCGTTTGGATTCTGGAAC....................................................................................................................21129.002912001214
.........................................................................................................................GCAAAGCGTTTGGATTCTGGAA.....................................................................................................................22127.00273001023
.......................................................................................................GTTGCA-TATGAAATTAGG..........................................................................................................................................18125.00250010024
.................................................................................TTTAGAATTCCTACGCTTTACCA............................................................................................................................................................23125.00250232000
.................................................................................TTTAGAATTCCTACGCTTTACAA............................................................................................................................................................23124.00240231000
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................19116.00160301012
.................................................................................TTTAGAATTCCTACGCTTTAA..............................................................................................................................................................21114.00140120002
.................................................................................TTTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................24113.00130001012
.........................................................................................................................GCAAAGCGTTTGGATTCTGGA......................................................................................................................21112.0012100407
..........................................................................................................................CAAAGCGTTTGGATTCTGGAAT....................................................................................................................22111.0011000317
.........................................................................................................................GCAAAGCGTTTGGATTCTGG.......................................................................................................................20110.0010000019
.................................................................................TTTAGAATTCCTACGCTTTACT.............................................................................................................................................................2218.008040004
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................2017.007150010
..........................................................................................................................CAAAGCGTTTGGATTCTGGAAAA...................................................................................................................2316.006200112
..........................................................................................................................CAAAGCGTTTGGATTCTGGAACG...................................................................................................................2316.006001104
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................2016.006230001
...........................................................................................................................AAAGCGTTTGGATTCTGGAACA...................................................................................................................2215.005000005
.................................................................................TTTAGAATTCCTACGCTTTAAA.............................................................................................................................................................2215.005041000
..................................................................................TTAGAATTCCTACGCTTTACCG............................................................................................................................................................2214.004310000
.................................................................................TTTAGAATTCCTACGCTTTACAAA...........................................................................................................................................................2414.004040000
.........................................................................................................................GCAAAGCGTTTGGATTCTGGAAA....................................................................................................................2314.004000004
.................................................................................TTTAGAATTCCTACGCTTTACCGTT..........................................................................................................................................................2514.004000004
..........................................................................................................................CAAAGCGTTTGGATTCTGGAG.....................................................................................................................2114.004010201
..........................................................................................................................CAAAGCGTTTGGATTCTGGT......................................................................................................................2013.003000102
.................................................................................TTTAGAATTCCTACGCTTTACCAA...........................................................................................................................................................2413.003030000
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................1813.003001002
.................................................................................TTTAGAATTCCTACGCTTTAAAA............................................................................................................................................................2313.003030000
........................................AAAAA---------------------AGGGTATTGTGGAGT...................................................................................................................................................................................2013.003210000
.................................................................................TTTAGAATTCCTACGCTTTACCT............................................................................................................................................................2312.002010001
..........................................................................................................................CAAAGCGTTTGGATTCTGGAAG....................................................................................................................2212.002100001
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................1812.002010100
...................................................................................TAGAATTCCTACGCTTTAC..............................................................................................................................................................1912.002110000
.................................................................................TTTAGAATTCCTACGCTTAC...............................................................................................................................................................2012.002020000
.................................................................................TTTAGAATTCCTACGCTTTACG.............................................................................................................................................................2212.002200000
..........................................................................................................................CAAAGCGTTTGGATTCTGGTT.....................................................................................................................2111.001000100
..........................................................................................................................CAAAGCGTTTGGATTCTGGC......................................................................................................................2011.001000100
.............................................................................................................................AGCGTTTGGATTCTGGAAC....................................................................................................................1911.001100000
..........................................................................................................................CAAAGCGTTTGGATTCTGT.......................................................................................................................1911.001000001
.........................................................................................................................GCAAAGCGTTTGGATTCTGGAG.....................................................................................................................2211.001000001
.................................................................................TTTAGAATTCCTACGCTTTACCGTTGC........................................................................................................................................................2711.001000100
..................................................................................TTAGAATTCCTACGCTTTA...............................................................................................................................................................1911.001000001
..........................................................................................................................CAAAGCGTTTGGATTCTGGAACAA..................................................................................................................2411.001000001
.....A----------------------------------AAAAA---------------------AGGGTATTGTGGAGT...................................................................................................................................................................................2111.001000001
.........................................................................................................................GCAAAGCGTTTGGATTCTGGT......................................................................................................................2111.001000001
...........................................................................................................................AAAGCGTTTGGATTCTGGAACAA..................................................................................................................2311.001100000
..........................................................................................................................CAAAGCGTTTGGATTCTGGAAGA...................................................................................................................2311.001000100
...........................................................................................................................AAAGCGTTTGGATTCTGGA......................................................................................................................1911.001000001
.........................................................................................................................GCAAAGCGTTTGGATTCTGGAAC....................................................................................................................2311.001000001
droBip1
-------------------------------------------------------------------GGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGC--TATGATATTTGGCAAAGCGTTTGGATTCTGGAACCCTACGTATTCATT------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
-------------------------------------------------------------------GGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTA----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................22139546.0039546272532482329337228299211011711197
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC....................................................................................................................2218999.0089991867088962311232348417305869
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................2114676.004676459154529683616132557142
..........................................................................................................................CAAAGCGTTTGGATTCTGAAA.....................................................................................................................2111357.0013572651891183140311070
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................231659.00659215091343215022817
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................211449.00449021914204010902
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAC....................................................................................................................231388.00388015413639071276
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACA...................................................................................................................231263.002630394315151381291
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................221151.0015102630783101210
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACC...................................................................................................................231129.00129013272546019134
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................201127.001270279682100641
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAA.....................................................................................................................221115.001153240001191373
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................20192.0092063124010210
..........................................................................................................................CAAAGCGTTTGGATTCTGAA......................................................................................................................20175.0075050426010147
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC....................................................................................................................21175.0075045211110024
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAA....................................................................................................................22171.0071078200030123
.................................................................................TTTAGAATTCCTACGCTTTACCA............................................................................................................................................................23161.00610176270001010
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................20154.005408343000000
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................19149.004905328260401
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACT...................................................................................................................23148.004803442326024
..................................................................................TTAGAATTCCTACGCTTTACCG............................................................................................................................................................22138.003802711000801
.................................................................................TTTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................24128.002801217160001
.................................................................................TTTAGAATTCCTACGCTTTACT.............................................................................................................................................................22122.002202212100311
.................................................................................TTTAGAATTCCTACGCTTTACCT............................................................................................................................................................23118.001801312000200
..........................................................................................................................CAAAGCGTTTGGATTCTGA.......................................................................................................................19116.00160300220207
.................................................................................TTTAGAATTCCTACGCTTTAA..............................................................................................................................................................21116.00160914010010
...................................................................................TAGAATTCCTACGCTTTACCG............................................................................................................................................................21114.001401211000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAA...................................................................................................................23112.00120400000800
.................................................................................TTTAGAATTCCTACGCTTTACG.............................................................................................................................................................22110.00100106000021
.......................................................................................................GTTGCAAAACGAAATTCGG..........................................................................................................................................19110.00100320110003
.................................................................................TTTAGAATTCCTACGCTTTT...............................................................................................................................................................2019.0090008010000
.................................................................................TTTAGAATTCCTACGCTTTACCC............................................................................................................................................................2319.0090333000000
..................................................................................TTAGAATTCCTACGCTTTA...............................................................................................................................................................1918.0080413000000
...................................................................................TAGAATTCCTACGCTTTAC..............................................................................................................................................................1918.0080601010000
...........................................................................................................................AAAGCGTTTGGATTCTGAAA.....................................................................................................................2018.0080300000005
............................................................................................................................AAGCGTTTGGATTCTGAAAC....................................................................................................................2018.0080700000100
................................................................................TTTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2318.0080503000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAA......................................................................................................................2118.0080100110131
..................................................................................TTAGAATTCCTACGCTTTACCA............................................................................................................................................................2215.0050311000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAA..................................................................................................................2415.0050300000200
...........................................................................................................................AAAGCGTTTGGATTCTGAAACA...................................................................................................................2215.0050500000000
.................................................................................TTTAGAATTCCTACGCTTTACCGC...........................................................................................................................................................2415.0050005000000
.................................................................................TTTAGAATTCCTACGCTTTACAA............................................................................................................................................................2315.0050410000000
.....................................................................................GAATTCCTACGCTTTACC.............................................................................................................................................................1815.0050500000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACCA..................................................................................................................2415.0050201010100
.................................................................................TTTAGAATTCCTACGCTTTACCGTTGC........................................................................................................................................................2714.0040201000010
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAT....................................................................................................................2214.0040100110001
.................................................................................TTTAGAATTCCTACGCTTTACCGTAA.........................................................................................................................................................2614.0040310000000
.................................................................................TTTAGAATTCCTACGCTTC................................................................................................................................................................1914.0040004000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAACC...................................................................................................................2414.0040000000400
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAAA.................................................................................................................2514.0040400000000
.................................................................................TTTAGAATTCCTACGCTTTACCGA...........................................................................................................................................................2413.0030200100000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAAA..................................................................................................................2413.0030200000100
..................................................................................TTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................2313.0030201000000
.................................................................................TTTAGAATTCCTACGCTTTACCAAA..........................................................................................................................................................2513.0030100000200
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACGAG.................................................................................................................2513.0030000000300
....................................................................................AGAATTCCTACGCTTTACC.............................................................................................................................................................1913.0030201000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACCTCT----------------------------------------------------------------------------------------------------------------2613.0030000000300
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................1813.0030002000100
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAA....................................................................................................................2313.0030100000020
............................................................................................................................AAGCGTTTGGATTCTGAAA.....................................................................................................................1913.0030300000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACCC..................................................................................................................2412.0020000000020
...................................................................................TAGAATTCCTACGCTTTACCGA...........................................................................................................................................................2212.0020200000000
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................1812.0020200000000
..................................................................................TTAGAATTCCTACGCTTTACA.............................................................................................................................................................2112.0020200000000
droPer2
-------------------------------------------------------------------GGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTA----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2212192.0021927185165237352310
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC....................................................................................................................2211937.0019376681112542662978
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................211619.00619121212431101294
..........................................................................................................................CAAAGCGTTTGGATTCTGAAA.....................................................................................................................211425.004251972063713629
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACA...................................................................................................................231125.001252541176711
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................231100.00100314138161
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACC...................................................................................................................23172.007238417193
..........................................................................................................................CAAAGCGTTTGGATTCTGAA......................................................................................................................20160.006094013331
..........................................................................................................................CAAAGCGTTTGGATTCTGA.......................................................................................................................19156.005695011301
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACT...................................................................................................................23152.005223306182
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAC....................................................................................................................23144.004415411383
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................21137.00370340120
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAA.....................................................................................................................22136.00362500650
.................................................................................TTTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................24125.00250402181
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................22122.00221201000
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................20119.00190190000
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................20119.0019071380
.................................................................................TTTAGAATTCCTACGCTTTACCA............................................................................................................................................................23117.00170130130
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC....................................................................................................................21117.0017080450
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................18116.00160104110
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................19111.0011110540
.........................................................................................................................GCAAAGCGTTTGGATTCTGAA......................................................................................................................2117.007400111
.................................................................................TTTAGAATTCCTACGCTTTACCAA...........................................................................................................................................................2416.006060000
.................................................................................TTTAGAATTCCTACGCTTTAA..............................................................................................................................................................2116.006131100
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAA....................................................................................................................2216.006400110
...........................................................................................................................AAAGCGTTTGGATTCTGAAA.....................................................................................................................2015.005010040
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAA..................................................................................................................2415.005050000
.................................................................................TTTAGAATTCCTACGCTTTACCT............................................................................................................................................................2315.005020120
.................................................................................TTTAGAATTCCTACGCTTTACAA............................................................................................................................................................2315.005050000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACG...................................................................................................................2314.004110020
..................................................................................TTAGAATTCCTACGCTTTACCG............................................................................................................................................................2214.004040000
.................................................................................TTTAGAATTCCTACGCTTTACT.............................................................................................................................................................2214.004010120
.......................................................................................................GTTGCAAAACGAAATTCGG..........................................................................................................................................1914.004040000
.........................................................................................................................GCAAAGCGTTTGGATTCTGA.......................................................................................................................2013.003110100
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................1813.003300000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAAAA..................................................................................................................2413.003300000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACCA..................................................................................................................2413.003020010
...........................................................................................................................AAAGCGTTTGGATTCTGA.......................................................................................................................1812.002020000
.................................................................................TTTAGAATTCCTACGCTTTT...............................................................................................................................................................2012.002010100
.................................................................................TTTAGAATTCCTACGCTTTACCC............................................................................................................................................................2312.002100010
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................2012.002010010
..........................................................................................................................CAAAGCGTTTGGATTCTGG.......................................................................................................................1912.002200000
............................................................................................................................AAGCGTTTGGATTCTGAAAC....................................................................................................................2012.002000011
..........................................................................................................................CAAAGCGTTTGGATTCTGAT......................................................................................................................2012.002000020
.........................................................................................................................GCAAAGCGTTTGGATTCTGTT......................................................................................................................2111.001100000
.................................................................................TTTAGAATTCCTACGCTTTACCTGA..........................................................................................................................................................2511.001000010
..................................................................................TTAGAATTCCTACGCTTTACA.............................................................................................................................................................2111.001010000
..........................................................................................................................CAAAGCGTTTGGATTCTGATC.....................................................................................................................2111.001000010
.................................................................................TTTAGAATTCCTACGCTTTAT..............................................................................................................................................................2111.001000010
.................................................................................TTTAGAATTCCTACGCTTTACCGTAAA........................................................................................................................................................2711.001010000
..........................................................................................................................CAAAGCGTTTGGATTCTGT.......................................................................................................................1911.001000010
..................................................................................................................AAATTCGGCAAAGCGTTTGGATTCT.........................................................................................................................2511.001000100
...........................................................................................................................AAAGCGTTTGGATTCTGAAACC...................................................................................................................2211.001000010
.................................................................................TTTAGAATTCCTACGCTTTACAT............................................................................................................................................................2311.001010000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAC.....................................................................................................................2111.001000010
.....................................................................................GAATTCCTACGCTTTACC.............................................................................................................................................................1811.001000100
.................................................................................TTTAGAATTCCTACGCTTTACCGAAA.........................................................................................................................................................2611.001010000
.................................................................................TTTAGAATTCCTACGCTTAC...............................................................................................................................................................2011.001010000
..................................................................................TTAGAATTCCTACGCTTTACCAAA..........................................................................................................................................................2411.001010000
.................................................................................TTTAGAATTCCTACGCTTTACCAAA..........................................................................................................................................................2511.001010000
.............................................................................................................................AGCGTTTGGATTCTGAAAC....................................................................................................................1911.001100000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAA....................................................................................................................2311.001100000
droWil2
--------------------------------------------------------------------------GTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCAC-ATAG------CAACATTGA----CTAAAGAGCTA------------CCAAAAG---------------------GAT---------------A---------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................22161392.006139252811702217397119
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC....................................................................................................................2217241.00724158937356371848
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................2116195.006195544482124644
..........................................................................................................................CAAAGCGTTTGGATTCTGAAA.....................................................................................................................2113375.0033753209111330112
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................2313240.00324020196731191032
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAA.....................................................................................................................221698.0069867500320
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACT...................................................................................................................231572.0057251822545
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAC....................................................................................................................231565.00565441425068
..........................................................................................................................CAAAGCGTTTGGATTCTGAA......................................................................................................................201333.0033327914742
.................................................................................TTTAGAATTCCTACGCTTTACCT............................................................................................................................................................231312.003123041016
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACC...................................................................................................................231228.0022819140429
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACA...................................................................................................................231172.0017276162069
................................................................................TTTTAGAATTCCTACGCTTTACC.............................................................................................................................................................231115.001151054006
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................211113.0011335610215
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................20195.00956050327
..........................................................................................................................CAAAGCGTTTGGATTCTGA.......................................................................................................................19192.00926812318
................................................................................TTTTAGAATTCCTACGCTTTAC..............................................................................................................................................................22190.0090812043
.........................................................................................................................GCAAAGCGTTTGGATTCTGAA......................................................................................................................21181.0081771012
............................................................................................................................AAGCGTTTGGATTCTGAAAC....................................................................................................................20180.0080751202
.................................................................................TTTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................24176.0076510367
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC....................................................................................................................21150.00502860610
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................19148.0048451002
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................22140.00401600024
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAA....................................................................................................................22137.0037281017
.................................................................................TTTAGAATTCCTACGCTTTACCA............................................................................................................................................................23134.0034301102
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................18130.0030281010
.................................................................................TTTAGAATTCCTACGCTTTACT.............................................................................................................................................................22127.00271600011
.......................................................................................................GTCGCC-TACGAAACTCGG..........................................................................................................................................18125.0025900124
.................................................................................TTTAGAATTCCTACGCTTTACCC............................................................................................................................................................23122.0022201001
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACG...................................................................................................................23118.001890018
..................................................................................TTAGAATTCCTACGCTTTACCG............................................................................................................................................................22116.0016410002
.............................................................................................................................AGCGTTTGGATTCTGAAAC....................................................................................................................19115.0015102003
..........................................................................................................................CAAAGCGTTTGGATTCTGAT......................................................................................................................20112.0012120000
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................20111.001123006
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................18111.001180012
.................................................................................TTTAGAATTCCTACGCTTTAA..............................................................................................................................................................21111.001170004
................................................................................TTTTAGAATTCCTACGCTTT................................................................................................................................................................20110.001071002
..........................................................................................................................CAAAGCGTTTGGATTCTGG.......................................................................................................................19110.0010100000
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................2019.00927000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAA....................................................................................................................2317.00740012
.........................................................................................................................GCAAAGCGTTTGGATTCTGA.......................................................................................................................2017.00750002
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAACT...................................................................................................................2416.00640002
................................................................................TTTTAGAATTCCTACGCTT.................................................................................................................................................................1916.00650001
...........................................................................................................................AAAGCGTTTGGATTCTGAAA.....................................................................................................................2016.00650001
..........................................................................................................................CAAAGCGTTTGGATTCTGAAC.....................................................................................................................2115.00540010
.................................................................................TTTAGAATTCCTACGCTTTACG.............................................................................................................................................................2215.00550000
..............................................................................................................................GCGTTTGGATTCTGAAAC....................................................................................................................1814.00440000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAT.....................................................................................................................2114.00440000
....................................................................................AGAATTCCTACGCTTTACC.............................................................................................................................................................1914.00411002
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAACA...................................................................................................................2413.00310002
................................................................................TTTTAGAATTCCTACGCTTTA...............................................................................................................................................................2113.00330000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAG.....................................................................................................................2113.00330000
.................................................................................TTTAGAATTCCTACGCTTTACCGTT..........................................................................................................................................................2513.00310002
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAG....................................................................................................................2213.00330000
..........................................................................................................................CAAAGCGTTTGGATTCTT........................................................................................................................1822.50550000
.................................................................................TTTAGAATTCCTACGCTTTACCGTCG.........................................................................................................................................................2612.00200002
.................................................................................TTTAGAATTCCTACGCTTTACCGA...........................................................................................................................................................2412.00210001
.................................................................................TTTAGAATTCCTACGCTTAC...............................................................................................................................................................2012.00210001
...........................................................................................................................AAAGCGTTTGGATTCTGAAACC...................................................................................................................2212.00210100
...........................................................................................................................AAAGCGTTTGGATTCTGAAACT...................................................................................................................2212.00210010
.........................................................................................................................GCAAAGCGTTTGGATTCTG........................................................................................................................1912.00200002
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACAT..................................................................................................................2412.00220000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAACC...................................................................................................................2412.00220000
.................................................................................TTTAGAATTCCTACGCTTTT...............................................................................................................................................................2012.00220000
.................................................................................TTTAGAATTCCTACGCTTTACCGG...........................................................................................................................................................2412.00201001
.................................................................................TTTAGAATTCCTACGCTTTACCGC...........................................................................................................................................................2412.00220000
...........................................................................................................................AAAGCGTTTGGATTCTGAAACA...................................................................................................................2212.00210010
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAG.....................................................................................................................2212.00220000
...........................................................................................................................AAAGCGTTTGGATTCTGA.......................................................................................................................1812.00220000
.............................................................................................................................AGCGTTTGGATTCTGAAACC...................................................................................................................2012.00220000
..........................................................................................................................CAAAGCGTTTGGATTCTGAATT....................................................................................................................2211.00110000
droVir3
-------------------------------------------------------------------------------GTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTCG-----------------GTAA----CAACAAAAACA------------GAAAT---------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2219222.0092227343352695720000000000420192108241287167045324600020741401000100712181100170122132020466448112874000272415491685455641117124
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................2111314.0013145464432110000000007649245377430864400002402200001000260000000000000231171319110044240500114931826
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC....................................................................................................................221676.006768423137000000000009327104111140000020000000000000111000000000001546626500010042000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAA.....................................................................................................................211577.00577184703101000000006905430810000002100000000000000000000000001122018300000104003000001
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................201104.001040182200000000007349950155000002000000000000000000000000000010009100000001000011000
..........................................................................................................................CAAAGCGTTTGGATTCTGAA......................................................................................................................20169.006914920000000000030102200000000100000000000000000000000000000008000000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACT...................................................................................................................23167.006705910000000000012001000100000000000000000000000000000000000002000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................23155.00553930000000000090123307200000000000000000000000000000000005203000001000000000101
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................19147.004713110000000000000200103000000000100000000000000000000000004002000000000000000001
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................21138.003800293000000000011011000100000000000000000000000000000000000001000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACCT............................................................................................................................................................23132.003202600000000000020100001000000000000000000000000000000000001000000000000000000010
..........................................................................................................................CAAAGCGTTTGGATTCTGA.......................................................................................................................19124.002401800000000000020000000100000000000000000000000000000000000002100000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACC...................................................................................................................23118.001801401000000000000000000100000000000000000000000000000000000101000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACCA............................................................................................................................................................23117.00170100000000000000113100000000000000000000000000000000000000002000010300001001002
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACA...................................................................................................................23116.00161800000000000010111000000000000000000000000000000000000000002100000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................22114.00140420000000000000010001000000000000000000000000000000000001000000001000000001021
..........................................................................................................................CAAAGCGTTTGGATTCTT........................................................................................................................18114.001401400000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................18112.001201100000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACCC............................................................................................................................................................2318.0080311000000000000000000000000000000000000000000000000000000100000000000002000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAA......................................................................................................................2117.0071500000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................2016.0060122000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAA....................................................................................................................2216.0061400000000000000000000000000000000000000000000000000000000000100000000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC....................................................................................................................2115.0050401000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................GTCGTG-TCCGAAATTTGG..........................................................................................................................................1815.0050202000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................2015.0050050000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................1815.0050110000000000000000100000000000000000000000000000000000000001000000000000000001
.................................................................................TTTAGAATTCCTACGCTTTAA..............................................................................................................................................................2114.0040200000000000000000100000000000000000000000000000000000000000000000000000000010
..........................................................................................................................CAAAGCGTTTGGATTCTGG.......................................................................................................................1913.0031200000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACT.............................................................................................................................................................2213.0030100000000000000001000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAA.....................................................................................................................2213.0030100000000000000010000000000000000000000000000000000000000000000000001000000000
............................................................................................................................AAGCGTTTGGATTCTGAAAC....................................................................................................................2013.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTAGAATTCCTACGCTTTACCG............................................................................................................................................................2213.0030000000000000010000000000000000000000000000000000000000000110000000000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAAA.....................................................................................................................2012.0021000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAT......................................................................................................................2012.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAC......................................................................................................................2012.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGC...................................................................................................................................................................1612.0020000000000000000000000000000000000000000000000000000000002000000000000000000000
....................................................................................AGAATTCCTACGCTTTACC.............................................................................................................................................................1912.0020110000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTT...............................................................................................................................................................2012.0020100000000000000000001000000000000000000000000000000000000000000000000000000000
................................................................................TTTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2312.0020000000000000000000000000000000000000000000001000000000000100000000000000000000
................................................................................TTTTAGAATTCCTACGCTTTAC..............................................................................................................................................................2211.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTA................................................................................................................................................................1911.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAG......................................................................................................................2111.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAG.....................................................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACTT..................................................................................................................2411.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACCAA...........................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................TTTAGAATTCCTACGCTTTACCGTAA.........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................CAAAGCGTTTGGATTCTGAAACG...................................................................................................................2311.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTAG..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAAACT...................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTAAA.............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTACCGTT..........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................TTAGAATTCCTACGCTTTACCT............................................................................................................................................................2211.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAAAGCGTTTGGATTCTGAAC.....................................................................................................................2111.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ATTTGGCAAAGCGTTTGGATTC..........................................................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................AAAGCGTTTGGATTCTGAA......................................................................................................................1911.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTTG...............................................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTAGAATTCCTACGT...................................................................................................................................................................1620.5010000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................TTTAGAATTCCTACGCTTC................................................................................................................................................................1920.5010100000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
-------------------------------------------------------------------------------GTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAAC--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2214709.004709109452219392289656
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC--------------------------------------------------------------------------------------------------------------------221752.007526184810548248
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................211321.0032187328411575
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................211143.00143111000311
..........................................................................................................................CAAAGCGTTTGGATTCTGAAA.....................................................................................................................21174.007462124086
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................20131.00318051251
..........................................................................................................................CAAAGCGTTTGGATTCTGA.......................................................................................................................19114.0014202325
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................23114.0014600080
..........................................................................................................................CAAAGCGTTTGGATTCTGAA......................................................................................................................20112.0012301215
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................20112.00121000020
.................................................................................TTTAGAATTCCTACGCTTTACA.............................................................................................................................................................22110.0010000370
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................2018.008400040
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC--------------------------------------------------------------------------------------------------------------------2118.008700010
.................................................................................TTTAGAATTCCTACGCTTT................................................................................................................................................................1917.007101410
.................................................................................TTTAGAATTCCTACGCTTTACCC............................................................................................................................................................2315.005300110
.................................................................................TTTAGAATTCCTACGCTTTACCA............................................................................................................................................................2313.003100200
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAA--------------------------------------------------------------------------------------------------------------------2213.003000012
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAA.....................................................................................................................2213.003000201
....................................................................................AGAATTCCTACGCTTTACC.............................................................................................................................................................1912.002100010
.................................................................................TTTAGAATTCCTACGCT..................................................................................................................................................................1712.002000200
............................................................................................................................AAGCGTTTGGATTCTGAAAC--------------------------------------------------------------------------------------------------------------------2012.002100010
.......................................................................................................GTCGTA-TACGCAATTTGG..........................................................................................................................................1812.002000020
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAT--------------------------------------------------------------------------------------------------------------------2212.002000200
..................................................................................TTAGAATTCCTACGCTTTA...............................................................................................................................................................1912.002200000
................................................................................TTTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2312.002100100
...................................................................................TAGAATTCCTACGCTTTACA.............................................................................................................................................................2011.001000010
.....................................................................................GAATTCCTACGCTTTACC.............................................................................................................................................................1811.001000010
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................1811.001000100
.................................................................................TTTAGAATTCCTACGCTTTACCGGA..........................................................................................................................................................2511.001000010
..........................................................................................................................CAAAGCGTTTGGATTCTG........................................................................................................................1811.001000100
................................................................................TTTTAGAATTCCTACGCTTTAC..............................................................................................................................................................2211.001000010
.................................................................................TTTAGAATTCCTACGCTTTACCT............................................................................................................................................................2311.001100000
...................................................................................TAGAATTCCTACGCTTTAC..............................................................................................................................................................1911.001000010
.................................................................................TTTAGAATTCCTACGCTTTACT.............................................................................................................................................................2211.001000010
.........................................................................................................................GCAAAGCGTTTGGATTCTGAAAC--------------------------------------------------------------------------------------------------------------------2311.001001000
.................................................................................TTTAGAATTCCTACGCTTTACCGTCGTA-......................................................................................................................................................2811.001000100
.........................................................................................................................GCAAAGCGTTTGGATTCTGA.......................................................................................................................2011.001001000
............................................................................................................................AAGCGTTTGGATTCTGAAA.....................................................................................................................1911.001100000
.................................................................................TTTAGAATTCCTACGCTTTT...............................................................................................................................................................2011.001001000
.................................................................................TTTAGAATTCCTACGCTTTACCGT...........................................................................................................................................................2411.001000100
.................................................................................TTTAGAATTCCTACGCTTTAAA.............................................................................................................................................................2220.501000010
.................................................................................TTTAGAATTCCTACGCTTTATT.............................................................................................................................................................2220.501001000
droGri2
CACATAAATAATAGAATGATTTAAAGG----ATAGTAGTT---------------------TACCGTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAAC--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.................................................................................TTTAGAATTCCTACGCTTTACC.............................................................................................................................................................221137.001371334
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAC--------------------------------------------------------------------------------------------------------------------22132.00322111
.................................................................................TTTAGAATTCCTACGCTTTAC..............................................................................................................................................................21112.0012111
..................................................................................TTAGAATTCCTACGCTTTACC.............................................................................................................................................................21110.0010100
...........................................................................................................................AAAGCGTTTGGATTCTGAAAC--------------------------------------------------------------------------------------------------------------------2112.00220
...................................................................................TAGAATTCCTACGCTTTACC.............................................................................................................................................................2012.00220
..........................................................................................................................CAAAGCGTTTGGATTCTGAAAG--------------------------------------------------------------------------------------------------------------------2211.00101
................................................................................TTTTAGAATTCCTACGCTTTACC.............................................................................................................................................................2311.00110
.................................................................................TTTAGAATTCCTACGCTTTA...............................................................................................................................................................2011.00110
.......................................................................................................GTCGTA-TACGAAATTTGG..........................................................................................................................................1811.00110
.................................................................................TTTAGAATTCCTACGCTTTACCG............................................................................................................................................................2311.00110
..................................................................................TTAGAATTCCTACGCTTTAC..............................................................................................................................................................2011.00110
.................................................................................TTTAGAATTCCTACGCTT.................................................................................................................................................................1811.00110

Generated: 10/20/2015 at 10:12 PM