ID:

der_27

 Coordinate:

scaffold_4690:1633140-1633202 -

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.0

Flybase annnotation

Antisense to intron [Dere\GG18704-in]; utr3 [utr3_minus_9916]

No Repeatable elements found

Sense Strand Reads

AGTGTATAGCTTAAATCCACCGGAATTGTGTGATATTATGTTACAGTGATTTAATAATTCGATTCGAAGTTATGTGCTTTAATCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCGTGTGAGAAATTGCTCATGATATGC

***********************************..((((((((((((((((((((((((.((((...(((((.............)))))...)))).)))))))))))))))))).))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V107

male body		 V108

head

 M055

female body

 V060

head

 V040

embryo

 M057

embryo
...........................................................................................AATGCGAAACGGATTATTAAG................................................... 21 0 1 3196.00 3196 2852 307 22 13 2 0
...........................................................................................AATGCGAAACGGATTATTAAGT.................................................. 22 0 1 2871.00 2871 2547 271 28 8 13 4
...........................................................................................AATGCGAAACGGATTATTAAGTT................................................. 23 0 1 139.00 139 128 11 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAA.................................................... 20 0 2 127.50 255 223 27 3 2 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTA................................................. 23 1 1 60.00 60 53 6 0 1 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTAA................................................ 24 1 1 51.00 51 48 3 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAA.................................................... 22 0 1 48.00 48 40 8 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGA.................................................. 22 1 1 44.00 44 34 10 0 0 0 0
..........................................................................................AAATGCGAAACGGATTATTAAG................................................... 22 0 1 41.00 41 34 5 1 0 1 0
.........................................................................................TAAATGCGAAACGGATTATTAAG................................................... 23 0 1 37.00 37 31 5 0 1 0 0
..................................................TTAATAATTCGATTCGAAGTTA........................................................................................... 22 0 1 32.00 32 26 2 3 0 0 1
............................................................................................ATGCGAAACGGATTATTAAGT.................................................. 21 0 1 21.00 21 19 0 2 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAA................................................... 23 1 2 13.00 26 20 6 0 0 0 0
............................................................................................ATGCGAAACGGATTATTAAG................................................... 20 0 1 12.00 12 8 2 2 0 0 0
...........................................................................................AATTCGAAACGGATTATTAAG................................................... 21 1 1 7.00 7 2 5 0 0 0 0
..........................................................................................CAATGCGAAACGGATTATTAAG................................................... 22 1 1 7.00 7 2 5 0 0 0 0
...........................................................................................AATGCAAAACGGATTATTAAGT.................................................. 22 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTTA................................................ 24 0 1 7.00 7 6 1 0 0 0 0
...........................................................................................AATGCGAAACTGATTATTAAGT.................................................. 22 1 1 7.00 7 2 5 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTAAA............................................... 25 2 1 6.00 6 5 1 0 0 0 0
...........................................................................................AATGCGAAGCGGATTATTAAGT.................................................. 22 1 1 6.00 6 5 1 0 0 0 0
...........................................................................................AATGCGAAACTGATTATTAAG................................................... 21 1 1 6.00 6 1 5 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTTT................................................ 24 1 1 5.00 5 2 2 0 1 0 0
...........................................................................................AATGCTAAACGGATTATTAAGT.................................................. 22 1 1 5.00 5 1 4 0 0 0 0
...........................................................................................AATGCTAAACGGATTATTAAG................................................... 21 1 1 5.00 5 3 2 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAATT.................................................. 22 1 1 5.00 5 2 1 1 1 0 0
...........................................................................................AATGCGAAGCGGATTATTAAG................................................... 21 1 1 4.00 4 4 0 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTA..................................................... 21 0 1 4.00 4 4 0 0 0 0 0
...........................................................................................AATGCGAAACAGATTATTAAG................................................... 21 1 1 4.00 4 3 0 0 1 0 0
...........................................................................................AATGCGAAACGGCTTATTAAGT.................................................. 22 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................AATACGAAACGGATTATTAAGT.................................................. 22 1 1 4.00 4 2 2 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTA..................................................... 19 0 2 4.00 8 6 1 1 0 0 0
...........................................................................................AGTGCGAAACGGATTATTAAGT.................................................. 22 1 1 4.00 4 3 1 0 0 0 0
...........................................................................................AACGCGAAACGGATTATTAAGT.................................................. 22 1 1 4.00 4 3 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATT...................................................... 18 0 2 3.50 7 0 6 1 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGC.................................................. 22 1 2 3.00 6 5 1 0 0 0 0
...........................................................................................AATGCGAAACGTATTATTAAGT.................................................. 22 1 1 3.00 3 2 1 0 0 0 0
..........................................................................................CAATGCGAAACGGATTATTAAGT.................................................. 23 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................AATTCGAAACGGATTATTAAGT.................................................. 22 1 1 3.00 3 1 2 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTACGT.................................................. 22 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................AAGGCGAAACGGATTATTAAGT.................................................. 22 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATCAAG................................................... 21 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTC................................................. 23 1 1 3.00 3 2 1 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATT...................................................... 20 0 1 3.00 3 1 1 1 0 0 0
...........................................................................................AATGCGAAACGGGTTATTAAG................................................... 21 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................AATGAGAAACGGATTATTAAG................................................... 21 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................AATGCGAAACGTATTATTAAG................................................... 21 1 1 3.00 3 0 3 0 0 0 0
...........................................................................................AATGCGAAACGGACTATTAAG................................................... 21 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................AATGCGAAACGGATCATTAAG................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................AAATGCGAAACGGATTATTAA.................................................... 21 0 2 2.50 5 4 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTGTTAAGT.................................................. 22 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................ACTGCGAAACGGATTATTAAGT.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTTAA............................................... 25 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................GCGAAACGGATTATTAAG................................................... 18 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATACGAAACGGATTATTAAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................AAATGCGAAACGGATTATTAAGT.................................................. 23 0 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTTTTAAGT.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATAAAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGCAACGGATTATTAAG................................................... 21 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGCGAAATGGATTATTAAGT.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAACT.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTACG................................................... 21 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGCAAAACGGATTATTAAG................................................... 21 1 2 2.00 4 4 0 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAGT.................................................. 24 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTGAGT.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGTGAAACGGATTATTAAGT.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGTGAAACGGATTATTAAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAATGGATTATTAAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTCTTAAGT.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTG................................................. 23 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AAGGCGAAACGGATTATTAAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAGGCGGATTATTAAGT.................................................. 22 2 1 2.00 2 1 1 0 0 0 0
.............................................................................................TGCGAAACGGATTATTAAG................................................... 19 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................TGCGAAACGGATTATTAAGT.................................................. 20 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAT................................................... 21 1 2 1.50 3 1 2 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAAA.................................................. 24 2 2 1.50 3 2 1 0 0 0 0
...........................................................................................AATGCGAAACGCATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCCAAACGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGAA................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACGGGTTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAGACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAGCGGATTGTTAAGT.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................AAGGCGAAACGGATTATTAAGAA................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................AAATGCGAACCGGATTATTAAG................................................... 22 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................AATGCGAAAAGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTCGAAACGGATTATTAAGTT................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTCAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AAGGCGAAACGGATTATTAAGTT................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTT..................................................... 19 1 2 1.00 2 0 2 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAT................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGAAA................................................ 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTTAAA.............................................. 26 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGAATATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AAATGCGAAGCGGATTATTAAG................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACAGATTATTAAGT.................................................. 22 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................AATGCGAGACGGATTATTAAGT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AATGCGTAACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGAATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCTAAACGGATTATTAAGTAA................................................ 24 2 2 1.00 2 2 0 0 0 0 0
...........................................................................................AATACGAAACGGATTATTAAGTT................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACTGATTATTAAGTT................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TTAATAATTCTATTCGAAGTTA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATCAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAGCGGATTATTAAGTT................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TTAATAATTCGATTCGAAGTTAT.......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACTGCGAAACGGATTATTAAG................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................ATGCGAAACTGATTATTAAGT.................................................. 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AGTGCGAAACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGGGAAACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTCTTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACCGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTAATAATTCGATTCGAAGTTAA.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTAC................................................ 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAGACGGATTATTAAGTA................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCCAAACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAGGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................AACGAAACGGATTATTAAGT.................................................. 20 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAAAA................................................. 25 3 2 1.00 2 2 0 0 0 0 0
...........................................................................................AACGCGAAACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTAATAATTCGATTCGAAGTTATGTGCTT.................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................AATGAGAAACGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
....................................................AATAATTCGATTCGAAGTT............................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................GATGCGAAACGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAAAGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTTAT............................................... 25 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCTAAACTGATTATTAAGT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAGA.................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAACCGGCTTATTAAGT.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
...........................................................................................AATGCGAAACGGATTATTAGG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATCCGAAACGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TAAATGCGAAACTGATTATTAAG................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AGTGCGAAACGGATTCTTAAG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTACTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTCTTCAG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TAAATACGAAACGGATTATTAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATTGCGAAACGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................GATGCGAAACGGATTATTAAG................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTAT................................................ 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGGGAAACGGATTATTAA.................................................... 20 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................AACGCGAAACGGATTATTAAGC.................................................. 22 2 2 0.50 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACAGATTATTACG................................................... 21 2 2 0.50 1 0 0 0 1 0 0
...........................................................................................AATGCGAAACGGATTATTAT.................................................... 20 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAGT................................................... 21 2 2 0.50 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGCTTATTAA.................................................... 20 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................AATTCGAAACGGATTATTAA.................................................... 20 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................AATGCGAGGCGGATTATTAA.................................................... 20 2 2 0.50 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAC................................................... 21 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAATT................................................. 23 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATCATTAA.................................................... 20 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................AAATGCGAAACGGATTATT...................................................... 19 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................AAATGCGAAACGGATTATTA..................................................... 20 0 2 0.50 1 0 0 0 1 0 0
...........................................................................................AATGCGAAACGGATTATTAAGCT................................................. 23 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGACTATTAA.................................................... 20 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................AATGAGAAACGGATTATTAA.................................................... 20 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................AAATGCGAAACAGATTATTAA.................................................... 21 1 3 0.33 1 1 0 0 0 0 0
..................................AATATGTTACAGTGCGTTAAT............................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATAAG.................................................... 20 2 4 0.25 1 1 0 0 0 0 0
...........................................................................................AATGCGTAACGGATTCTTC..................................................... 19 3 17 0.06 1 1 0 0 0 0 0

Anti-sense strand reads

TCACATATCGAATTTAGGTGGCCTTAACACACTATAATACAATGTCACTAAATTATTAAGCTAAGCTTCAATACACGAAATTAGTAAGTATTTACGCTTTGCCTAATAATTCAATAACAATTGTAAGTTGAGCAACCGCACACTCTTTAACGAGTACTATACG

************************************..((((((((((((((((((((((((.((((...(((((.............)))))...)))).)))))))))))))))))).))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 V107

male body		 V108

head

 M057

embryo

 V040

embryo

 V060

head
................................................TAAATTATTAAGCTAAGCTTCA............................................................................................. 22 0 1 80.00 80 40 17 16 6 1 0
.................................................AAATTATTAAGCTAAGCTTCA............................................................................................. 21 0 1 13.00 13 9 3 0 1 0 0
..................................................AATTATTAAGCTAAGCTTCA............................................................................................. 20 0 1 12.00 12 11 1 0 0 0 0
..................................................AATTATTAAGCTAAGCTTCAAT........................................................................................... 22 0 1 4.00 4 3 0 1 0 0 0
.........................................................................................ATTTACGCTTTGCCTAATAATT.................................................... 22 0 1 3.00 3 2 1 0 0 0 0
...................................................ATTATTAAGCTAAGCTTCA............................................................................................. 19 0 1 3.00 3 0 0 3 0 0 0
..........................................................................................TTTACGCTTTGCCTAATAATT.................................................... 21 0 2 2.50 5 3 1 0 1 0 0
.......................................................................................GTATTTACGCTTTGCCTAATAAT..................................................... 23 0 1 2.00 2 1 0 1 0 0 0
.................................................AAATTATTAAGCTAAGCTTCAAT........................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0
.............................................AAATAAATTATTAAGCTAAGCTTCA............................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
................................................TAAATTATTAAGCTAAGCTTC.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.................................................AAATTATTAAGTTAAGCTTCA............................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0
................................................AAAATTATTAAGCTAAGCTTCT............................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
...................................................ATTATTAAGCTAAGCTTC.............................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................GTATTTACGCTTTGCCTAATAATT.................................................... 24 0 1 1.00 1 1 0 0 0 0 0
....................................................TTATTAAGCTAAGCTTCAAT........................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
.................................................AAATTATTAAACTAAGCTTCA............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...............................................GTAAATTATTAAGCTAAGCTTCA............................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0
.................................................AAATTATTAAGCTAAGCTTCAC............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
................................................TAAATTATTAAGCTAAGATTCA............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
....................................................TTATTAAGCTAAGCTTCA............................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0
.................................................AAATTATTAAGCTAAGCTTC.............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
................................................TAAGTTATTAAGCTAAGCTTCA............................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
................................................CAAATTATTAAGCTAAGCTTCA............................................................................................. 22 1 1 1.00 1 0 0 0 0 0 1
...............................................ATAAATTATTAAGCTAAGCTTCA............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................GCGAAGTTTCAATACACAAA.................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0

-31.0

Flybase annnotation

Antisense to intron [Dere\GG18704-in]; utr3 [utr3_minus_9916]

No Repeatable elements found

Sense Strand Reads

AGTGTATAGCTTAAATCCACCGGAATTGTGTGATATTATGTTACAGTGATTTAATAATTCGATTCGAAGTTATGTGCTTTAATCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCGTGTGAGAAATTGCTCATGATATGC

***********************************..((((((((((((((((((((((((.((((...(((((.............)))))...)))).)))))))))))))))))).))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V107

male body		 V108

head

 M055

female body

 V060

head

 V040

embryo

 M057

embryo
...........................................................................................AATGCGAAACGGATTATTAAG................................................... 21 0 1 3196.00 3196 2852 307 22 13 2 0
...........................................................................................AATGCGAAACGGATTATTAAGT.................................................. 22 0 1 2871.00 2871 2547 271 28 8 13 4
...........................................................................................AATGCGAAACGGATTATTAAGTT................................................. 23 0 1 139.00 139 128 11 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAA.................................................... 20 0 2 127.50 255 223 27 3 2 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTA................................................. 23 1 1 60.00 60 53 6 0 1 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTAA................................................ 24 1 1 51.00 51 48 3 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAA.................................................... 22 0 1 48.00 48 40 8 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGA.................................................. 22 1 1 44.00 44 34 10 0 0 0 0
..........................................................................................AAATGCGAAACGGATTATTAAG................................................... 22 0 1 41.00 41 34 5 1 0 1 0
.........................................................................................TAAATGCGAAACGGATTATTAAG................................................... 23 0 1 37.00 37 31 5 0 1 0 0
..................................................TTAATAATTCGATTCGAAGTTA........................................................................................... 22 0 1 32.00 32 26 2 3 0 0 1
............................................................................................ATGCGAAACGGATTATTAAGT.................................................. 21 0 1 21.00 21 19 0 2 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAA................................................... 23 1 2 13.00 26 20 6 0 0 0 0
............................................................................................ATGCGAAACGGATTATTAAG................................................... 20 0 1 12.00 12 8 2 2 0 0 0
...........................................................................................AATTCGAAACGGATTATTAAG................................................... 21 1 1 7.00 7 2 5 0 0 0 0
..........................................................................................CAATGCGAAACGGATTATTAAG................................................... 22 1 1 7.00 7 2 5 0 0 0 0
...........................................................................................AATGCAAAACGGATTATTAAGT.................................................. 22 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTTA................................................ 24 0 1 7.00 7 6 1 0 0 0 0
...........................................................................................AATGCGAAACTGATTATTAAGT.................................................. 22 1 1 7.00 7 2 5 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTAAA............................................... 25 2 1 6.00 6 5 1 0 0 0 0
...........................................................................................AATGCGAAGCGGATTATTAAGT.................................................. 22 1 1 6.00 6 5 1 0 0 0 0
...........................................................................................AATGCGAAACTGATTATTAAG................................................... 21 1 1 6.00 6 1 5 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTTT................................................ 24 1 1 5.00 5 2 2 0 1 0 0
...........................................................................................AATGCTAAACGGATTATTAAGT.................................................. 22 1 1 5.00 5 1 4 0 0 0 0
...........................................................................................AATGCTAAACGGATTATTAAG................................................... 21 1 1 5.00 5 3 2 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAATT.................................................. 22 1 1 5.00 5 2 1 1 1 0 0
...........................................................................................AATGCGAAGCGGATTATTAAG................................................... 21 1 1 4.00 4 4 0 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTA..................................................... 21 0 1 4.00 4 4 0 0 0 0 0
...........................................................................................AATGCGAAACAGATTATTAAG................................................... 21 1 1 4.00 4 3 0 0 1 0 0
...........................................................................................AATGCGAAACGGCTTATTAAGT.................................................. 22 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................AATACGAAACGGATTATTAAGT.................................................. 22 1 1 4.00 4 2 2 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTA..................................................... 19 0 2 4.00 8 6 1 1 0 0 0
...........................................................................................AGTGCGAAACGGATTATTAAGT.................................................. 22 1 1 4.00 4 3 1 0 0 0 0
...........................................................................................AACGCGAAACGGATTATTAAGT.................................................. 22 1 1 4.00 4 3 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATT...................................................... 18 0 2 3.50 7 0 6 1 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGC.................................................. 22 1 2 3.00 6 5 1 0 0 0 0
...........................................................................................AATGCGAAACGTATTATTAAGT.................................................. 22 1 1 3.00 3 2 1 0 0 0 0
..........................................................................................CAATGCGAAACGGATTATTAAGT.................................................. 23 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................AATTCGAAACGGATTATTAAGT.................................................. 22 1 1 3.00 3 1 2 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTACGT.................................................. 22 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................AAGGCGAAACGGATTATTAAGT.................................................. 22 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATCAAG................................................... 21 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTC................................................. 23 1 1 3.00 3 2 1 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATT...................................................... 20 0 1 3.00 3 1 1 1 0 0 0
...........................................................................................AATGCGAAACGGGTTATTAAG................................................... 21 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................AATGAGAAACGGATTATTAAG................................................... 21 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................AATGCGAAACGTATTATTAAG................................................... 21 1 1 3.00 3 0 3 0 0 0 0
...........................................................................................AATGCGAAACGGACTATTAAG................................................... 21 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................AATGCGAAACGGATCATTAAG................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................AAATGCGAAACGGATTATTAA.................................................... 21 0 2 2.50 5 4 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTGTTAAGT.................................................. 22 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................ACTGCGAAACGGATTATTAAGT.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTTAA............................................... 25 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................GCGAAACGGATTATTAAG................................................... 18 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATACGAAACGGATTATTAAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................AAATGCGAAACGGATTATTAAGT.................................................. 23 0 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTTTTAAGT.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATAAAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGCAACGGATTATTAAG................................................... 21 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGCGAAATGGATTATTAAGT.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAACT.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTACG................................................... 21 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGCAAAACGGATTATTAAG................................................... 21 1 2 2.00 4 4 0 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAGT.................................................. 24 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTGAGT.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGTGAAACGGATTATTAAGT.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGTGAAACGGATTATTAAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAATGGATTATTAAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTCTTAAGT.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTG................................................. 23 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................AAGGCGAAACGGATTATTAAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAGGCGGATTATTAAGT.................................................. 22 2 1 2.00 2 1 1 0 0 0 0
.............................................................................................TGCGAAACGGATTATTAAG................................................... 19 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................TGCGAAACGGATTATTAAGT.................................................. 20 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAT................................................... 21 1 2 1.50 3 1 2 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAAA.................................................. 24 2 2 1.50 3 2 1 0 0 0 0
...........................................................................................AATGCGAAACGCATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCCAAACGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGAA................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACGGGTTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAGACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAGCGGATTGTTAAGT.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................AAGGCGAAACGGATTATTAAGAA................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................AAATGCGAACCGGATTATTAAG................................................... 22 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................AATGCGAAAAGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTCGAAACGGATTATTAAGTT................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTCAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AAGGCGAAACGGATTATTAAGTT................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTT..................................................... 19 1 2 1.00 2 0 2 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAT................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGAAA................................................ 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTTAAA.............................................. 26 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGAATATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AAATGCGAAGCGGATTATTAAG................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACAGATTATTAAGT.................................................. 22 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................AATGCGAGACGGATTATTAAGT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AATGCGTAACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGAATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCTAAACGGATTATTAAGTAA................................................ 24 2 2 1.00 2 2 0 0 0 0 0
...........................................................................................AATACGAAACGGATTATTAAGTT................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACTGATTATTAAGTT................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TTAATAATTCTATTCGAAGTTA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATCAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAGCGGATTATTAAGTT................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TTAATAATTCGATTCGAAGTTAT.......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACTGCGAAACGGATTATTAAG................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................ATGCGAAACTGATTATTAAGT.................................................. 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AGTGCGAAACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGGGAAACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTCTTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACCGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTAATAATTCGATTCGAAGTTAA.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTAC................................................ 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAGACGGATTATTAAGTA................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCCAAACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAGGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................AACGAAACGGATTATTAAGT.................................................. 20 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAAAA................................................. 25 3 2 1.00 2 2 0 0 0 0 0
...........................................................................................AACGCGAAACGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTAATAATTCGATTCGAAGTTATGTGCTT.................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................AATGAGAAACGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
....................................................AATAATTCGATTCGAAGTT............................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................GATGCGAAACGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAAAGGATTATTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTTAT............................................... 25 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCTAAACTGATTATTAAGT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TAAATGCGAAACGGATTATTAAGA.................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAACCGGCTTATTAAGT.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
...........................................................................................AATGCGAAACGGATTATTAGG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATCCGAAACGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TAAATGCGAAACTGATTATTAAG................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AGTGCGAAACGGATTCTTAAG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTACTAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTCTTCAG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TAAATACGAAACGGATTATTAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATTGCGAAACGGATTATTAAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................GATGCGAAACGGATTATTAAG................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAGTAT................................................ 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AATGGGAAACGGATTATTAA.................................................... 20 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................AACGCGAAACGGATTATTAAGC.................................................. 22 2 2 0.50 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACAGATTATTACG................................................... 21 2 2 0.50 1 0 0 0 1 0 0
...........................................................................................AATGCGAAACGGATTATTAT.................................................... 20 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAGT................................................... 21 2 2 0.50 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGCTTATTAA.................................................... 20 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................AATTCGAAACGGATTATTAA.................................................... 20 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................AATGCGAGGCGGATTATTAA.................................................... 20 2 2 0.50 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAC................................................... 21 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................AATGCGAAACGGATTATTAAATT................................................. 23 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATCATTAA.................................................... 20 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................AAATGCGAAACGGATTATT...................................................... 19 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................AAATGCGAAACGGATTATTA..................................................... 20 0 2 0.50 1 0 0 0 1 0 0
...........................................................................................AATGCGAAACGGATTATTAAGCT................................................. 23 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGACTATTAA.................................................... 20 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................AATGAGAAACGGATTATTAA.................................................... 20 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................AAATGCGAAACAGATTATTAA.................................................... 21 1 3 0.33 1 1 0 0 0 0 0
..................................AATATGTTACAGTGCGTTAAT............................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0
...........................................................................................AATGCGAAACGGATTATAAG.................................................... 20 2 4 0.25 1 1 0 0 0 0 0
...........................................................................................AATGCGTAACGGATTCTTC..................................................... 19 3 17 0.06 1 1 0 0 0 0 0

Anti-sense strand reads

TCACATATCGAATTTAGGTGGCCTTAACACACTATAATACAATGTCACTAAATTATTAAGCTAAGCTTCAATACACGAAATTAGTAAGTATTTACGCTTTGCCTAATAATTCAATAACAATTGTAAGTTGAGCAACCGCACACTCTTTAACGAGTACTATACG

************************************..((((((((((((((((((((((((.((((...(((((.............)))))...)))).)))))))))))))))))).))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 V107

male body		 V108

head

 M057

embryo

 V040

embryo

 V060

head
................................................TAAATTATTAAGCTAAGCTTCA............................................................................................. 22 0 1 80.00 80 40 17 16 6 1 0
.................................................AAATTATTAAGCTAAGCTTCA............................................................................................. 21 0 1 13.00 13 9 3 0 1 0 0
..................................................AATTATTAAGCTAAGCTTCA............................................................................................. 20 0 1 12.00 12 11 1 0 0 0 0
..................................................AATTATTAAGCTAAGCTTCAAT........................................................................................... 22 0 1 4.00 4 3 0 1 0 0 0
.........................................................................................ATTTACGCTTTGCCTAATAATT.................................................... 22 0 1 3.00 3 2 1 0 0 0 0
...................................................ATTATTAAGCTAAGCTTCA............................................................................................. 19 0 1 3.00 3 0 0 3 0 0 0
..........................................................................................TTTACGCTTTGCCTAATAATT.................................................... 21 0 2 2.50 5 3 1 0 1 0 0
.......................................................................................GTATTTACGCTTTGCCTAATAAT..................................................... 23 0 1 2.00 2 1 0 1 0 0 0
.................................................AAATTATTAAGCTAAGCTTCAAT........................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0
.............................................AAATAAATTATTAAGCTAAGCTTCA............................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
................................................TAAATTATTAAGCTAAGCTTC.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.................................................AAATTATTAAGTTAAGCTTCA............................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0
................................................AAAATTATTAAGCTAAGCTTCT............................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
...................................................ATTATTAAGCTAAGCTTC.............................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................GTATTTACGCTTTGCCTAATAATT.................................................... 24 0 1 1.00 1 1 0 0 0 0 0
....................................................TTATTAAGCTAAGCTTCAAT........................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
.................................................AAATTATTAAACTAAGCTTCA............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...............................................GTAAATTATTAAGCTAAGCTTCA............................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0
.................................................AAATTATTAAGCTAAGCTTCAC............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
................................................TAAATTATTAAGCTAAGATTCA............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
....................................................TTATTAAGCTAAGCTTCA............................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0
.................................................AAATTATTAAGCTAAGCTTC.............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
................................................TAAGTTATTAAGCTAAGCTTCA............................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
................................................CAAATTATTAAGCTAAGCTTCA............................................................................................. 22 1 1 1.00 1 0 0 0 0 0 1
...............................................ATAAATTATTAAGCTAAGCTTCA............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................GCGAAGTTTCAATACACAAA.................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4690:1633090-1633252 - der_27 confident AGTGTA----TAGCTTAAA---TCCACCGGAATTGTGTG---ATA---TTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCAT----------------TCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCG--------TGTGAGAAA-------------------TTGCTCATGATATGC
droSec2 scaffold_4:2462183-2462350 + dse_50 confident G-TGAA----TGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCAT----------------TCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTAC
droSim2 x:3957161-3957328 - dsi-mir-983 Known_mirbase G-TGAA----TGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCAT----------------TCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTAC
dm3 chrX:4262305-4262440 - dme-mir-983-1 Known_mirbase T-----------------------------------------ATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCAT----------------TCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCG--------TATGAGAAA-------------------TTACTTATGATGTAC
droBia1 scf7180000301703:495529-495680 + T-----------------------------------------------------TCCAATCATTAGAAAGTT----CGTTACGTACTATT--------------TGCTCGGTTTAAAAAC-AAATAGTACGTGTCGGATTTTCAAATTATTGCTTACAATCAACATGCTCGAGAGCATTGAGATCTTTAAAACAAAGTGTTGTGCCTAAGTACCAGTGATTTTA
droTak1 scf7180000415394:1160794-1160914 + T-----------------------------------------------------TCCAATCATTTAATAGTC----CGATTCGTTCTTAG--------------TGCTTATTTTGAAAATGCAGTAGTGCGTTTCGGATTATTCAATTATTGTTAACAAACATCGAG-----A--------GATCTTGTA-------------------CTTAAAACGATATAA
droFic1 scf7180000453901:210004-210155 + A-TATACCTATAACAAATATTA-------------TTTACCCATC---A-TTGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTA----------------GTTTGGGAGCTTTGG---TTATAACATCAATGTAA-CAATTGA----CTACAA--------ATTAACAAA-------------------TCAAT--TTATATGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AGTGTA----TAGCTTAAA---TCCACCGGAATTGTGTG---ATA---TTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCAT----------------TCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCG--------TGTGAGAAA-------------------TTGCTCATGATATGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................................................AATGCGAAACGGATTATTAAG..............................................................................2113196.00319622013228523070
.............................................................................................................................AATGCGAAACGGATTATTAAGT.............................................................................2212871.00287128481325472710
.............................................................................................................................AATGCGAAACGGATTATTAAGTT............................................................................231139.001390000128110
.............................................................................................................................AATGCGAAACGGATTATTAA...............................................................................202127.502553020223270
.............................................................................................................................AATGCGAAACGGATTATTAAGTA............................................................................23160.006000105360
...........................................................................................................................TAAATGCGAAACGGATTATTAA...............................................................................22148.004800004080
.............................................................................................................................AATGCGAAACGGATTATTAAGA.............................................................................22144.0044000034100
............................................................................................................................AAATGCGAAACGGATTATTAAG..............................................................................22141.004110013450
...........................................................................................................................TAAATGCGAAACGGATTATTAAG..............................................................................23137.003700103150
...............................................................TTAATAATT----CGATTCGAAGTTA.......................................................................................................................................22132.003231002620
..............................................................................................................................ATGCGAAACGGATTATTAAGT.............................................................................21121.002120001900
...........................................................................................................................TAAATGCGAAACGGATTATTAAA..............................................................................23213.002600002060
..............................................................................................................................ATGCGAAACGGATTATTAAG..............................................................................20112.00122000820
.............................................................................................................................AATGCGAAACGGATTATTAAGTTA...........................................................................2417.0070000610
.............................................................................................................................AATGCGAAACGGATTATTAAGTTT...........................................................................2415.0050010220
...........................................................................................................................TAAATGCGAAACGGATTATTA................................................................................2114.0040000400
.............................................................................................................................AATGCGAAACGGATTATTA................................................................................1924.0081000610
.............................................................................................................................AATGCGAAACGGATTATT.................................................................................1823.5071000060
.............................................................................................................................AATGCGAAACGGATTATTAAGC.............................................................................2223.0060000510
.............................................................................................................................AATGCGAAACGGATTATTAAGTC............................................................................2313.0030000210
...........................................................................................................................TAAATGCGAAACGGATTATT.................................................................................2013.0031000110
............................................................................................................................AAATGCGAAACGGATTATTAA...............................................................................2122.5050000410
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAA..........................................................................2512.0020000200
................................................................................................................................GCGAAACGGATTATTAAG..............................................................................1812.0020000200
............................................................................................................................AAATGCGAAACGGATTATTAAGT.............................................................................2312.0020000110
...........................................................................................................................TAAATGCGAAACGGATTATTAAGT.............................................................................2412.0020000200
.............................................................................................................................AATGCGAAACGGATTATTAAGTG............................................................................2312.0020000110
...............................................................................................................................TGCGAAACGGATTATTAAG..............................................................................1912.0020000200
...............................................................................................................................TGCGAAACGGATTATTAAGT.............................................................................2012.0020000200
.............................................................................................................................AATGCGAAACGGATTATTAAT..............................................................................2121.5030000120
...........................................................................................................................TAAATGCGAAACGGATTATTAAAA.............................................................................2421.5030000210
.............................................................................................................................AATGCGAAACGGATTATTAAGAA............................................................................2311.0010000010
.............................................................................................................................AATGCGAAACGGATTATTT................................................................................1921.0020000020
...........................................................................................................................TAAATGCGAAACGGATTATTAAT..............................................................................2311.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAAA.........................................................................2611.0010000100
...............................................................TTAATAATT----CGATTCGAAGTTAT......................................................................................................................................2311.0010000100
...............................................................TTAATAATT----CGATTCGAAGTTAA......................................................................................................................................2311.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTAC...........................................................................2411.0010000100
...........................................................................................................................TAAATGCGAAACGGATTATTAAAAA............................................................................2521.0020000200
...............................................................TTAATAATT----CGATTCGAAGTTATGTGCTT................................................................................................................................2911.0011000000
.................................................................AATAATT----CGATTCGAAGTT........................................................................................................................................1911.0011000000
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAT..........................................................................2511.0010000100
...........................................................................................................................TAAATGCGAAACGGATTATTAAGA.............................................................................2411.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTAT...........................................................................2411.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAT...............................................................................2020.5010000010
.............................................................................................................................AATGCGAAACGGATTATTAGT..............................................................................2120.5010000100
.............................................................................................................................AATGCGAAACGGATTATTAAC..............................................................................2120.5010000010
............................................................................................................................AAATGCGAAACGGATTATT.................................................................................1920.5010000100
............................................................................................................................AAATGCGAAACGGATTATTA................................................................................2020.5010010000
droSec2
G-TGAA----TGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCAT----------------TCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTACSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................TGAGTTCGTTAGGTATTATCT................................................................................211361.00361832252330
...........................................................................................................................TGAGTTCGTTAGGTATTATCTA...............................................................................221224.00224631341017
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAA..............................................................................23175.007555785
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAT..............................................................................23171.007166410
..........................................................................................................................ATGAGTTCGTTAGGTATTATCT................................................................................22165.0065105122
...........................................................................................................................TGAGTTCGTTAGGTATTATC.................................................................................20132.003212614
.................................................................AGTAATA----CCTTTCGAACATATG.....................................................................................................................................22132.003225610
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAAA.............................................................................24126.002651830
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAG..............................................................................23123.002302201
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGT.............................................................................24119.00199505
.................................................................AGTAATA----CCTTTCGAACATATGA....................................................................................................................................23118.001818000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAAAA............................................................................25114.001411210
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAC..............................................................................23114.001411210
..........................................................................................................................ATGAGTTCGTTAGGTATTATC.................................................................................21112.00121812
.................................................................AGTAATA----CCTTTCGAACATAT......................................................................................................................................2116.0061401
...........................................................................................................................TGAGTTCGTTAGGTATTATCTATA.............................................................................2415.0050500
............................................................................................................................GAGTTCGTTAGGTATTATCT................................................................................2015.0055000
...............................................................TTAGTAATA----CCTTTCGAACATA.......................................................................................................................................2215.0054100
..........................................................................................................................ATGAGTTCGTTAGGTATTAT..................................................................................2014.0040400
.............................................................................................................................AGTTCGTTAGGTATTATCTAG..............................................................................2113.0030300
............................................................................................................................GAGTTCGTTAGGTATTATCTAT..............................................................................2213.0032100
...........................................................................................................................TGAGTTCGTTAGGTATTAT..................................................................................1913.0030210
.............................................................................................................................AGTTCGTTAGGTATTATCTAGT.............................................................................2213.0031200
................................................................TAGTAATA----CCTTTCGAACATAT......................................................................................................................................2213.0033000
..........................................................................................................................ATGAGTTCGTTAGGTATTATCTAA..............................................................................2412.0020200
............................................................................................................................GAGTTCGTTAGGTATTATCTAG..............................................................................2212.0021100
..................................................................GTAATA----CCTTTCGAACATATG.....................................................................................................................................2112.0022000
.................................................................AGTAATA----CCTTTCGAACATATGT....................................................................................................................................2312.0020200
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGA.............................................................................2411.0010100
..................................................................GTAATA----CCTTTCGAACATAT......................................................................................................................................2011.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTATC.............................................................................2411.0010100
..........................................................................................................................ATGAGTTCGTTAGGTATTATCTT...............................................................................2311.0010100
...........................................................................................................................TGAGTTCGTTAGGTATTAA..................................................................................1911.0010100
...............................................................TTAGTAATA----CCTTTCGAACAT........................................................................................................................................2111.0010001
.................................................................AGTAATA----CCTTTCGAACATA.......................................................................................................................................2011.0011000
...............................................................TTAGTAATA----CCTTTCGAACA.........................................................................................................................................2011.0011000
..........................................................................................................................ATGAGTTCGTTAGGTATTA...................................................................................1911.0010001
...........................................................................................................................TGAGTTCGTTAGGTATTATCTGT..............................................................................2311.0010100
.............................................................................................................................AGTTCGTTAGGTATTATCTAGG.............................................................................2211.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGTT............................................................................2511.0010100
............................................................................................................................GAGTTCGTTAGGTATTATCTA...............................................................................2111.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGTA............................................................................2511.0010100
droSim2
G-TGAA----TGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCAT----------------TCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTACSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................TGAGTTCGTCAGGTATTATCT................................................................................2116722.0067222734057122783325179602295887000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCT................................................................................2216446.006446100122939413973222143830184161028
..........................................................................................................................ATGAGTTCGTCAGGTATTATC.................................................................................2112808.002808253536301081543062112181001
.................................................................AGTAATA----CCTTTCGAACACATG.....................................................................................................................................2212195.00219524339106916174193101683981469000
.................................................................AGTAATA----CCTTTCGAACACATGA....................................................................................................................................2311858.001858228267694171239243252754765000
..........................................................................................................................ATGAGTTCGTCAGGTATTAT..................................................................................2011737.001737040021103101011704001
...........................................................................................................................TGAGTTCGTCAGGTATTATCTA...............................................................................2211568.00156851326801745393425738171032001
.................................................................AGTAATA----CCTTTCGAACACA.......................................................................................................................................201947.009472120287227325320017000
.................................................................AGTAATA----CCTTTCGAACACAT......................................................................................................................................211893.00893927616601613884301137000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAT..............................................................................231399.0039919200003111912360000
..........................................................................................................................ATGAGTTCGTCAGGTATTA...................................................................................191358.00358030013000000100224000
...........................................................................................................................TGAGTTCGTCAGGTATTATC.................................................................................201269.00269431506311300710153000
.................................................................AGTAATA----CCTTTCGAACAC........................................................................................................................................191238.002380100228102000006000
.................................................................AGTAATA----CCTTTCGAACA.........................................................................................................................................181194.001940000185601001001000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAA..............................................................................231191.00191016150004151500144000
...........................................................................................................................TGAGTTCGTCAGGTATTAT..................................................................................191165.0016500002300010200139000
.................................................................AGTAATA----CCTTTCGAACACATGAAA..................................................................................................................................251136.001360106000341229841032000
...........................................................................................................................TGAGTTCGTCAGGTATTA...................................................................................181120.001200000117100000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTT...............................................................................221105.001050200000000000103000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCC................................................................................22184.00847552000000000002000
.................................................................AGTAATA----CCTTTCGAACACATGAT...................................................................................................................................24178.00782600383102100025000
.................................................................AGTAATA----CCTTTCGAACACATGT....................................................................................................................................23175.00750101000001020061000
.................................................................AGTAATA----CCTTTCGAACACATGAA...................................................................................................................................24172.0072032000542210053000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTT...............................................................................23172.00720120000000000060000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCA................................................................................22156.0056050000010010049000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTA...............................................................................23152.0052091010135130226000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAAA.............................................................................24145.00450410000214340116000
..........................................................................................................................ATGAGTTCGTCAGGTATTAA..................................................................................20138.0038020000000000036000
..........................................................................................................................ATGAGTTCGTCAGGTATTT...................................................................................19137.0037000000000000037000
..........................................................................................................................ATGAGTTCGTCAGGTATT....................................................................................18133.0033031024000003002000
.................................................................AGTAATA----CCTTTCGAACACATGAAAA.................................................................................................................................26128.0028011000122000021000
..........................................................................................................................ATGAGTTCGTCAGGTATTATT.................................................................................21127.0027101000000000025000
...........................................................................................................................TGAGTTCGTCAGGTATTATCA................................................................................21126.0026000000000000026000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCG................................................................................22124.0024216600000000000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATA.................................................................................21123.0023000000000000023000
.................................................................AGTAATA----CCTTTCGAACACATGC....................................................................................................................................23123.0023000000000000023000
..........................................................................................................................ATGAGTTCGTCAGGTATTATAA................................................................................22122.0022000000000000022000
...........................................................................................................................TGAGTTCGTCAGGTATTATCC................................................................................21119.0019311500000000000000
.................................................................AGTAATA----CCTTTCGAACACATGG....................................................................................................................................23116.0016012400000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATA.................................................................................20113.0013000000000000013000
.................................................................AGTAATA----CCTTTCGAACACATA.....................................................................................................................................22112.0012000000000000012000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAAAA............................................................................25110.001000010011312001000
...........................................................................................................................TGAGTTCGTCAGGTATTATT.................................................................................20210.0020000000000000020000
...........................................................................................................................TGAGTTCGTCAGGTATTATAA................................................................................21110.0010000000000000010000
...........................................................................................................................TGAGTTCGTCAGGTA......................................................................................15110.0010000000000010000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCG................................................................................2119.00903200010000003000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTTT..............................................................................2319.00903000000000006000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTTT..............................................................................2419.00904000000000005000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTATAA............................................................................2519.00900000000100008000
............................................................................................................................GAGTTCGTCAGGTATTATCT................................................................................2019.00900005000000004000
..................................................................GTAATA----CCTTTCGAACACATGA....................................................................................................................................2218.00800016010000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAC..............................................................................2318.00803100000002002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAG..............................................................................2317.00701001000000005000
..............................................................................................................................GTTCGTCAGGTATTATCT................................................................................1816.00600000000006000000
.....................................................................ATA----CCTTTCGAACACATG.....................................................................................................................................1816.00600000010005000000
..................................................................GTAATA----CCTTTCGAACACATG.....................................................................................................................................2116.00600002003000001000
...........................................................................................................................TGAGTTCGTCAGGTATTAA..................................................................................1915.00500000000000005000
..........................................................................................................................ATGAGTTCGTCAGGT.......................................................................................1515.00500000000004001000
..........................................................................................................................ATGAGTTCGTCAGGTA......................................................................................1615.00500000000005000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTATA.............................................................................2414.00400000000000004000
.........................................................................................................................CATGAGTTCGTCAGGTATTATC.................................................................................2214.00400000000000004000
.................................................................AGTAATA----CCTTTCGAACACAA......................................................................................................................................2114.00400000000001003000
.................................................................AGTAATA----CCTTTCGAACACATGTAA..................................................................................................................................2513.00300000000000003000
.........................................................................................................................CATGAGTTCGTCAGGTATTATCT................................................................................2313.00300000000000003000
....................................................................AATA----CCTTTCGAACACATGA....................................................................................................................................2013.00300000000002001000
.................................................................AGTAATA----CCTTTCGAACACATGCA...................................................................................................................................2413.00300000000000003000
..................................................................GTAATA----CCTTTCGAACACATGAT...................................................................................................................................2313.00301002000000000000
...................................................................TAATA----CCTTTCGAACACATGA....................................................................................................................................2113.00300001000000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTG...............................................................................2213.00301200000000000000
.................................................................AGTAATA----CCTTTCGAACACATGACA..................................................................................................................................2513.00300000000000003000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAA..............................................................................2413.00302000000000001000
...........................................................................................................................TGAGTTCGTCAGGTATTTA..................................................................................1922.50500000000000005000
.............................................................................................................................AGTTCGTCAGGTATTATCT................................................................................1912.00200101000000000000
.................................................................AGTAATA----CCTTTCGAACACATGAAC..................................................................................................................................2512.00200200000000000000
.................................................................AGTAATA----CCTTTCGAA...........................................................................................................................................1612.00200000000001001000
............................................................................................................................GAGTTCGTCAGGTATTATC.................................................................................1912.00200001000001000000
.................................................................AGTAATA----CCTTTCGAACACATGTA...................................................................................................................................2412.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCAT...............................................................................2312.00200000000000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATTA................................................................................2122.00400000000000004000
............................................................................CCTTTCGAACACATGA....................................................................................................................................1612.00200000000002000000
..................................................................GTAATA----CCTTTCGAACACAT......................................................................................................................................2012.00200001000000001000
...........................................................................................................................TGAGTTCGTCAGGTATT....................................................................................1712.00200000000002000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTC...............................................................................2312.00200100000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTTA..................................................................................2012.00200000000000002000
.................................................................AGTAATA----CCTTTCGAACACATT.....................................................................................................................................2212.00202000000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTAAA.................................................................................2012.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTG...............................................................................2312.00200000000001001000
..........................................................................................................................ATGAGTTCGTCAGGTATAT...................................................................................1912.00200000000000002000
............................................................................................................................GAGTTCGTCAGGTATTATCTA...............................................................................2112.00200001000000001000
....................................................................AATA----CCTTTCGAACACATG.....................................................................................................................................1912.00200000000002000000
.................................................................AGTAATA----CCTTTCGAACACATGATT..................................................................................................................................2512.00200000000000002000
.....................................................................ATA----CCTTTCGAACACATGA....................................................................................................................................1912.00200011000000000000
.................................................................AGTAATA----CCTTTCGAACACATGAG...................................................................................................................................2412.00200000000001001000
.................................................................AGTAATA----CCTTTCGAACACATGTAG..................................................................................................................................2512.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAAA.............................................................................2512.00200100010000000000
.................................................................AGTAATA----CCTTTCGAACACATGATA..................................................................................................................................2512.00200000001000001000
.................................................................AGTAATA----CCTTTCGAACACATGAC...................................................................................................................................2412.00202000000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTTA..............................................................................2321.50301000000001001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATTC................................................................................2211.00100100000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCAT...............................................................................2211.00100000000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTTA..............................................................................2411.00100000000000001000
............................................................................................TTTTCAG-TCAT----------------TCATGAGTTCGTCAGG........................................................................................2711.00100000000100000000
..........................................................................................................................ATGAGTTCGTCAGGTATTG...................................................................................1911.00100000000000001000
................................................................................................................................TCGTCAGGTATTATCT................................................................................1611.00100000000001000000
...................................................................TAATA----CCTTTCGAACACATGAT...................................................................................................................................2211.00100000000000001000
............................................................................................................................GAGTTCGTCAGGTATTATCTT...............................................................................2111.00100000000000001000
.................................................................AGTAATA----CCTTTCGAACACATGGA...................................................................................................................................2411.00100000000000001000
................................................................................................................................TCGTCAGGTATTATCTA...............................................................................1711.00100000000001000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAT..............................................................................2411.00100000000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATG.................................................................................2111.00100000000000001000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAGT.............................................................................2411.00100000010000000000
..................................................................GTAATA----CCTTTCGAACACATGAAAA.................................................................................................................................2511.00100000000000001000
..............................................................................................................................GTTCGTCAGGTATTATCTAT..............................................................................2011.00100000000001000000
.................................................................AGTAATA----CCTTTCGAACACAAA.....................................................................................................................................2211.00100000000000001000
.......................................................................A----CCTTTCGAACACATGA....................................................................................................................................1711.00100000000001000000
dm3
T-----------------------------------------ATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCAT----------------TCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCG--------TATGAGAAA-------------------TTACTTATGATGTACSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................ATAATA----CGTTTCGAACTAATGA....................................................................................................................................22243492.5086985000000000011710000000119881330030000000056349616731828121923311675030000111000000000000000004235383501358014417101290044001113831719911006700080000000000000111564210109005342213910215632370401311443893130240500014130900084113051100010012311430520002510154000000222100000010001946197394319388489148382444349314744416135514300720912239215301616147144726571153636783179711693537151020160111669471113481183092074411273224908104407995161242557224969810333925835136288229617564796818336435914187345411656878530395444433203271219693394
..................................................................ATAATA----CGTTTCGAACTAATG.....................................................................................................................................21217263.50345270000000000050000000034231480000100000026933310393432646451115000000000000000000000002319183004401013126019101402018106304781412400013000010301000200068000000275063133883631623334221030020010401100167111130840000012849299100021601140000002140002004041015626774393209667667688288110011000030030141315214847100109414022118138365134752605231213105841117115206135144331671251159162322121974829213911215428042701731220219516783931015144332782517027711563461738104450130
..........................................................................................................................ATTAGGTAGTTACGCATTATCT................................................................................22215955.5031911000001000001500000100223935132005000000003612663219548619111749381200000000000000000000000973601084110013019810460122620411234149011170100000000002000000000001412045295251115122950400000107000330300039080607100520688616882310060046122000007410300000014792147360711791351105176342120090000117040441125012033101000791222306832472324613201269542712144129081227164538662152134091225311642592443710976204186015572384391577520231357100231813157121010299040
..................................................................ATAATA----CGTTTCGAACTAAT......................................................................................................................................20211806.0023612000000000004000000003111600200000000000001400100000200000000000000000000000001589110000002100100601600002100000200000600000000000020001613000000003300211270033000001403000210400211030305000000666530000060019000000110000000010111613393383615429680035000000001896190017322012425102413162913360863002512413627040911656453115109101265034162114171536171932061142461740173227015008037340513122062227120
..........................................................................................................................ATTAGGTAGTTACGCATTATC.................................................................................2123949.007898000001000000000000001200664000000000000200001111001015510000000000000000000000032010000100000100110060004000300000100070000000000000000450000000003420000133100000002000000000001300000000002018203661000600325000000060000000005343817134805031302000010000010019009170041260510159108011200131037185230516750133178110011807632200182912324911436132204710310193133411949116011365221286295430
..........................................................................................................................ATTAGGTAGTTACGCATTAT..................................................................................2021670.00334000000000000000000000100386001000000000000000100000100000000000000000000000000010010000200000000200400000000000001000300000000000000000000000000000100003000000000002200000000010100000000300103133800008402830000000000000005106108701000000100200000000000004005400000303005000402021085121519967192001654010143121631006012822931044822462210128442010312000003162800
..................................................................ATAATA----CGTTTCGAACTAATGAA...................................................................................................................................2321168.502337000000000002000000003001000000000000000002010000001632000000000000000000000001101030000000010060030020000000000500010100000000000000100000000350305010000430000000000042050002406000300000004508300003106000000024000100000119321027234329264612740058033000000010207500391001001010013000011000196006402731037000118800001642810700131758141828001224617700003821040704701220021200
..................................................................ATAATA----CGTTTCGAACTAATGATC..................................................................................................................................242904.50180900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285524000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAA.......................................................................................................................................192691.0013820000000000000000000000040000000000000100001000000000000000000000000000000000110100000000100000000000000000000000000000000000000000033000000000000000011000000000000000102000200000000000011301000020050000000000000010000210003201007005000000000110111036002007041083003011000240231212110091922011000000100202002013690000109000001322200117200
...................................................................TAATA----CGTTTCGAACTAATGA....................................................................................................................................212528.001056000000000000000000006003000000000000101000200000103000000000000000000000000000000000000000000300000000000030001000000000000000000000000000000000010001030010000400000000000000000000000000626000060200000002000000000003814041257322200400000000000000001000100401301700200000032057292800004030001922100220340140205622901001101001010411100031100
...........................................................................................................................TTAGGTAGTTACGCATTATCT................................................................................212424.0084800001000000610000000701155000000000000000000010001000100000000000000000000000052120000401101010450117000203016522022200800000000000000000000000000000000000000000000000000000000110002000000005400250000440200000001100000000024122301010001000000000000000002003000000100001900300010023023100300001270000200300030202010024032000032000000010000001200
..................................................................ATAATA----CGTTTCGAACTAATGT....................................................................................................................................222369.507390000000000000000000000030000000000001000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000101201000000000000000000101000000000001502100001101300000012000000000111710100001000000000000001000310220000010000151000000000610132070011268000063720002037291500077320000187100000020000200310
..................................................................ATAATA----CGTTTCGAACTAATGAAA..................................................................................................................................242312.506250000000000000000000010100000000000001001000000010001000000000000000000000000000000000000000002001000002000000030002000020002000000000000000221000010000040000000000001002002143300050000005180430000603700000007000000000102903101237171335810001331200000000000120050000000000000000000002700230010000100005605200030100130012106000010000000120200000000
...................................................................TAATA----CGTTTCGAACTAATGAT...................................................................................................................................222167.0033400000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000010000000000000000000180000000000000000000000000010010000000000000000000000000000000000000000060300000000000000000000000000141001010031000100000000001010020000001001090000000000410181300001530000010000100010000000167000127000100010000000200
..........................................................................................................................ATTAGGTAGTTACGCATTATCTA...............................................................................232130.0026000000020001700000000500290000000000010000000000000010000000000000000000000000000003000100001002610700440100100201800190000000000000000100000000010000000010000000000000000000001000001000000040200008090000000300000000000450010110000000000000000000010000000000000000000100001300127250000100008000000003000000002100000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAATA.....................................................................................................................................212123.0024600000000000200000000000110000000000000000000000000000000000000000000000000000000000000000000002001000000000000010002000000000000000000000000000000000000000000000000000000000102000000000003101900001901200000000000000000011020030001000000000000000001100110000001010020000000000103150000002800000240001000705170000017000040000010110000000200
...................................................................TAATA----CGTTTCGAACTAATG.....................................................................................................................................202109.50219000000000000001000000003000000000000002000000000000000000000000000000000000000000000000010000200000100000000000000000000000000000001000000010000000000000000200000000000000010000000000000002000020100000000000000000007103000012000000000000000000002100000100005010000000010004110000930000000000000000100000148000023000000000000010100
...........................................................................................................................TTAGGTAGTTACGCATTATC.................................................................................202103.5020700000000000000000000000280000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001401400008011000000000000000000019200000000000000000000000000000100000100008000000000000000030000250000100000010010200021130000027010001000000001100
..................................................................ATAATA----CGTTTCGAACTAATGAAAA.................................................................................................................................25298.501970000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000030000000000000000000000101000400000000000001511400003018000000310000000000131011104752200003000000000000110090000000000000000000004400310010000000008030000000006300013100000000001040000000100
..................................................................ATAATA----CGTTTCGAACTAATGC....................................................................................................................................22296.501930000000000000000000000000000000000000000003000000030000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000101000000000000000000100000000000000000000000000000000000000000031000000001000000000000000030011001002000010000000000500747113000147000033010031316011010201900002000000000000000000
..................................................................ATAATA----CGTTTCGAACTAAG......................................................................................................................................20295.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000100000000000000000000018300000000000000000000000300001000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTA...................................................................................19289.0017800000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003015000070230000000000000000000610010000000000000000000000000110000000000100301000001001511000046000030000000004321000114000018000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATT.....................................................................................................................................21281.501630000000000000000000000000010000000000000010000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000010000000000000000000010001020020007001201202000000000000002010000101000010000000000001000001000008000000000000001100
..................................................................ATAATA----CGTTTCGAACTA........................................................................................................................................18278.501570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000022330000000000000000000000000000000000010000000000000000000100000000000000000000000000151000100000000000000000000000000000000010040010000000401030100005700002000000100201001010100000000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATGG....................................................................................................................................22254.00108000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000002100000000200100000000000000002000000000001001000000040001707000031000021110001000001000031700008000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATGAT...................................................................................................................................23249.0098000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000102000010100000002000000000002002120002000011700000000000000000000000000100000000002014121400002200000000000001000000031400002000000010000000000
..................................................................ATAATA----CGTTTCGAACTAATC.....................................................................................................................................21248.009600000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000020100200000000001020610000045000000000000101001000002600002000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATCTATC.............................................................................25246.009200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAAA......................................................................................................................................20239.007800000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000040100000010000000000000000000300000000010000000000000000100100000000000100100000000000300000026000000000000000000000002500005000000000000001100
..................................................................ATAATA----CGTTTCGAACTAATGAG...................................................................................................................................23235.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000070100000000000000000000000000000000000000000102000000300000000000000000001010000002000000000000000000000000000000001000000000020009000000100004101000301103700014400004000003000000000000
...................................................................TAATA----CGTTTCGAACTAAT......................................................................................................................................19232.50650000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000001000000000000000000000001000010030000000000000011000004300000000000000001000001300005000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATCC................................................................................22232.006400000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000011020000201000000000000000000070000000001000000000000000000000000000000010010000000100060100001700000000001001100000000200004000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATA.................................................................................21230.006000000000000300000000000140000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000002020000007000000000000000000010000000000000000000000000000000000000000000000000000100130000001700000000000000100100101100000000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATT....................................................................................18228.505700000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000001030000000020000000000000000000151000000000000000000000000000001000000000010000000000000000000002000004010000000101000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAATGAAC..................................................................................................................................24228.50570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000459000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000
.................................................................AATAATA----CGTTTCGAACTAATG.....................................................................................................................................22225.50510000000000000000000010000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000200010000000000000000000000000000000040000000001500060000001500002000000000000100000400003000000010000000100
..........................................................................................................................ATTAGGTAGTTACGCATTATCA................................................................................22223.00460000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000206000000700000000000000000004000000000000010000000000000000000000000001000000000000001000000400000020000000000000000100000000000000000000000
...........................................................................................................................TTAGGTAGTTACGCATTAT..................................................................................19223.00460000000000000000000000040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004060000007000000000000000000010000000000000000000000000000001000001000030100000000000000000001000000000000000000100000400001000000010000000000
.................................................................AATAATA----CGTTTCGAACTAAT......................................................................................................................................21221.50430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000102000000000000000000000000000001000010000000000000020000002400000200000000000000000500003000000000000000000
.................................................................AATAATA----CGTTTCGAACTAATGA....................................................................................................................................23220.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000110201110000000000000000000000000000000010000000000000230000001600000200000100001000000300001000000000000000100
...................................................................TAATA----CGTTTCGAACTAATGAA...................................................................................................................................22219.5039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000010100000010000000000006001010212000000000000000002000000000000001000000000000013010000100001100000000100000000100001000000010100000000
..................................................................ATAATA----CGTTTCGAACTAATGAC...................................................................................................................................23219.5039000000000000000000000000000000000000000000100000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000004000010001000085000000000000000100000000000000000000020002000000400002000000001000000001300000000000000000000000
...........................................................................................................................TTAGGTAGTTACGCATTATCTA...............................................................................22216.0032000000000003100000000002000000000000000000000000100000000000000000000000000000000000000000100500300010000000006000100000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000102000000000000010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droBia1
T-----------------------------------------------------TCCAATCATTAGAAAGTT----CGTTACGTACTATT--------------TGCTCGGTTTAAAAAC-AAATAGTACGTGTCGGATTTTCAAATTATTGCTTACAATCAACATGCTCGAGAGCATTGAGATCTTTAAAACAAAGTGTTGTGCCTAAGTACCAGTGATTTTASizeHit CountTotal NormTotal
No Reads
droTak1
T-----------------------------------------------------TCCAATCATTTAATAGTC----CGATTCGTTCTTAG--------------TGCTTATTTTGAAAATGCAGTAGTGCGTTTCGGATTATTCAATTATTGTTAACAAACATCGAG-----A--------GATCTTGTA-------------------CTTAAAACGATATAASizeHit CountTotal NormTotal
No Reads
droFic1
A-TATACCTATAACAAATATTA-------------TTTACCCATC---A-TTGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTA----------------GTTTGGGAGCTTTGG---TTATAACATCAATGTAA-CAATTGA----CTACAA--------ATTAACAAA-------------------TCAAT--TTATATGTSizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:27 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4690:1633090-1633252 - der_27 confident AGTGTA----TAGCTTAAA---TCCACCGGAATTGTGTG---ATA---TTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCAT----------------TCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCG--------TGTGAGAAA-------------------TTGCTCATGATATGC
droSec2 scaffold_4:2462183-2462350 + dse_50 confident G-TGAA----TGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCAT----------------TCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTAC
droSim2 x:3957161-3957328 - dsi-mir-983 Known_mirbase G-TGAA----TGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCAT----------------TCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTAC
dm3 chrX:4262305-4262440 - dme-mir-983-1 Known_mirbase T-----------------------------------------ATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCAT----------------TCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCG--------TATGAGAAA-------------------TTACTTATGATGTAC
droBia1 scf7180000301703:495529-495680 + T-----------------------------------------------------TCCAATCATTAGAAAGTT----CGTTACGTACTATT--------------TGCTCGGTTTAAAAAC-AAATAGTACGTGTCGGATTTTCAAATTATTGCTTACAATCAACATGCTCGAGAGCATTGAGATCTTTAAAACAAAGTGTTGTGCCTAAGTACCAGTGATTTTA
droTak1 scf7180000415394:1160794-1160914 + T-----------------------------------------------------TCCAATCATTTAATAGTC----CGATTCGTTCTTAG--------------TGCTTATTTTGAAAATGCAGTAGTGCGTTTCGGATTATTCAATTATTGTTAACAAACATCGAG-----A--------GATCTTGTA-------------------CTTAAAACGATATAA
droFic1 scf7180000453901:210004-210155 + A-TATACCTATAACAAATATTA-------------TTTACCCATC---A-TTGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTA----------------GTTTGGGAGCTTTGG---TTATAACATCAATGTAA-CAATTGA----CTACAA--------ATTAACAAA-------------------TCAAT--TTATATGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AGTGTA----TAGCTTAAA---TCCACCGGAATTGTGTG---ATA---TTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCAT----------------TCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCG--------TGTGAGAAA-------------------TTGCTCATGATATGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................................................AATGCGAAACGGATTATTAAG..............................................................................2113196.00319622013228523070
.............................................................................................................................AATGCGAAACGGATTATTAAGT.............................................................................2212871.00287128481325472710
.............................................................................................................................AATGCGAAACGGATTATTAAGTT............................................................................231139.001390000128110
.............................................................................................................................AATGCGAAACGGATTATTAA...............................................................................202127.502553020223270
.............................................................................................................................AATGCGAAACGGATTATTAAGTA............................................................................23160.006000105360
...........................................................................................................................TAAATGCGAAACGGATTATTAA...............................................................................22148.004800004080
.............................................................................................................................AATGCGAAACGGATTATTAAGA.............................................................................22144.0044000034100
............................................................................................................................AAATGCGAAACGGATTATTAAG..............................................................................22141.004110013450
...........................................................................................................................TAAATGCGAAACGGATTATTAAG..............................................................................23137.003700103150
...............................................................TTAATAATT----CGATTCGAAGTTA.......................................................................................................................................22132.003231002620
..............................................................................................................................ATGCGAAACGGATTATTAAGT.............................................................................21121.002120001900
...........................................................................................................................TAAATGCGAAACGGATTATTAAA..............................................................................23213.002600002060
..............................................................................................................................ATGCGAAACGGATTATTAAG..............................................................................20112.00122000820
.............................................................................................................................AATGCGAAACGGATTATTAAGTTA...........................................................................2417.0070000610
.............................................................................................................................AATGCGAAACGGATTATTAAGTTT...........................................................................2415.0050010220
...........................................................................................................................TAAATGCGAAACGGATTATTA................................................................................2114.0040000400
.............................................................................................................................AATGCGAAACGGATTATTA................................................................................1924.0081000610
.............................................................................................................................AATGCGAAACGGATTATT.................................................................................1823.5071000060
.............................................................................................................................AATGCGAAACGGATTATTAAGC.............................................................................2223.0060000510
.............................................................................................................................AATGCGAAACGGATTATTAAGTC............................................................................2313.0030000210
...........................................................................................................................TAAATGCGAAACGGATTATT.................................................................................2013.0031000110
............................................................................................................................AAATGCGAAACGGATTATTAA...............................................................................2122.5050000410
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAA..........................................................................2512.0020000200
................................................................................................................................GCGAAACGGATTATTAAG..............................................................................1812.0020000200
............................................................................................................................AAATGCGAAACGGATTATTAAGT.............................................................................2312.0020000110
...........................................................................................................................TAAATGCGAAACGGATTATTAAGT.............................................................................2412.0020000200
.............................................................................................................................AATGCGAAACGGATTATTAAGTG............................................................................2312.0020000110
...............................................................................................................................TGCGAAACGGATTATTAAG..............................................................................1912.0020000200
...............................................................................................................................TGCGAAACGGATTATTAAGT.............................................................................2012.0020000200
.............................................................................................................................AATGCGAAACGGATTATTAAT..............................................................................2121.5030000120
...........................................................................................................................TAAATGCGAAACGGATTATTAAAA.............................................................................2421.5030000210
.............................................................................................................................AATGCGAAACGGATTATTAAGAA............................................................................2311.0010000010
.............................................................................................................................AATGCGAAACGGATTATTT................................................................................1921.0020000020
...........................................................................................................................TAAATGCGAAACGGATTATTAAT..............................................................................2311.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAAA.........................................................................2611.0010000100
...............................................................TTAATAATT----CGATTCGAAGTTAT......................................................................................................................................2311.0010000100
...............................................................TTAATAATT----CGATTCGAAGTTAA......................................................................................................................................2311.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTAC...........................................................................2411.0010000100
...........................................................................................................................TAAATGCGAAACGGATTATTAAAAA............................................................................2521.0020000200
...............................................................TTAATAATT----CGATTCGAAGTTATGTGCTT................................................................................................................................2911.0011000000
.................................................................AATAATT----CGATTCGAAGTT........................................................................................................................................1911.0011000000
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAT..........................................................................2511.0010000100
...........................................................................................................................TAAATGCGAAACGGATTATTAAGA.............................................................................2411.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTAT...........................................................................2411.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAT...............................................................................2020.5010000010
.............................................................................................................................AATGCGAAACGGATTATTAGT..............................................................................2120.5010000100
.............................................................................................................................AATGCGAAACGGATTATTAAC..............................................................................2120.5010000010
............................................................................................................................AAATGCGAAACGGATTATT.................................................................................1920.5010000100
............................................................................................................................AAATGCGAAACGGATTATTA................................................................................2020.5010010000
droSec2
G-TGAA----TGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCAT----------------TCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTACSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................TGAGTTCGTTAGGTATTATCT................................................................................211361.00361832252330
...........................................................................................................................TGAGTTCGTTAGGTATTATCTA...............................................................................221224.00224631341017
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAA..............................................................................23175.007555785
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAT..............................................................................23171.007166410
..........................................................................................................................ATGAGTTCGTTAGGTATTATCT................................................................................22165.0065105122
...........................................................................................................................TGAGTTCGTTAGGTATTATC.................................................................................20132.003212614
.................................................................AGTAATA----CCTTTCGAACATATG.....................................................................................................................................22132.003225610
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAAA.............................................................................24126.002651830
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAG..............................................................................23123.002302201
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGT.............................................................................24119.00199505
.................................................................AGTAATA----CCTTTCGAACATATGA....................................................................................................................................23118.001818000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAAAA............................................................................25114.001411210
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAC..............................................................................23114.001411210
..........................................................................................................................ATGAGTTCGTTAGGTATTATC.................................................................................21112.00121812
.................................................................AGTAATA----CCTTTCGAACATAT......................................................................................................................................2116.0061401
...........................................................................................................................TGAGTTCGTTAGGTATTATCTATA.............................................................................2415.0050500
............................................................................................................................GAGTTCGTTAGGTATTATCT................................................................................2015.0055000
...............................................................TTAGTAATA----CCTTTCGAACATA.......................................................................................................................................2215.0054100
..........................................................................................................................ATGAGTTCGTTAGGTATTAT..................................................................................2014.0040400
.............................................................................................................................AGTTCGTTAGGTATTATCTAG..............................................................................2113.0030300
............................................................................................................................GAGTTCGTTAGGTATTATCTAT..............................................................................2213.0032100
...........................................................................................................................TGAGTTCGTTAGGTATTAT..................................................................................1913.0030210
.............................................................................................................................AGTTCGTTAGGTATTATCTAGT.............................................................................2213.0031200
................................................................TAGTAATA----CCTTTCGAACATAT......................................................................................................................................2213.0033000
..........................................................................................................................ATGAGTTCGTTAGGTATTATCTAA..............................................................................2412.0020200
............................................................................................................................GAGTTCGTTAGGTATTATCTAG..............................................................................2212.0021100
..................................................................GTAATA----CCTTTCGAACATATG.....................................................................................................................................2112.0022000
.................................................................AGTAATA----CCTTTCGAACATATGT....................................................................................................................................2312.0020200
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGA.............................................................................2411.0010100
..................................................................GTAATA----CCTTTCGAACATAT......................................................................................................................................2011.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTATC.............................................................................2411.0010100
..........................................................................................................................ATGAGTTCGTTAGGTATTATCTT...............................................................................2311.0010100
...........................................................................................................................TGAGTTCGTTAGGTATTAA..................................................................................1911.0010100
...............................................................TTAGTAATA----CCTTTCGAACAT........................................................................................................................................2111.0010001
.................................................................AGTAATA----CCTTTCGAACATA.......................................................................................................................................2011.0011000
...............................................................TTAGTAATA----CCTTTCGAACA.........................................................................................................................................2011.0011000
..........................................................................................................................ATGAGTTCGTTAGGTATTA...................................................................................1911.0010001
...........................................................................................................................TGAGTTCGTTAGGTATTATCTGT..............................................................................2311.0010100
.............................................................................................................................AGTTCGTTAGGTATTATCTAGG.............................................................................2211.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGTT............................................................................2511.0010100
............................................................................................................................GAGTTCGTTAGGTATTATCTA...............................................................................2111.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGTA............................................................................2511.0010100
droSim2
G-TGAA----TGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCAT----------------TCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTACSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................TGAGTTCGTCAGGTATTATCT................................................................................2116722.0067222734057122783325179602295887000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCT................................................................................2216446.006446100122939413973222143830184161028
..........................................................................................................................ATGAGTTCGTCAGGTATTATC.................................................................................2112808.002808253536301081543062112181001
.................................................................AGTAATA----CCTTTCGAACACATG.....................................................................................................................................2212195.00219524339106916174193101683981469000
.................................................................AGTAATA----CCTTTCGAACACATGA....................................................................................................................................2311858.001858228267694171239243252754765000
..........................................................................................................................ATGAGTTCGTCAGGTATTAT..................................................................................2011737.001737040021103101011704001
...........................................................................................................................TGAGTTCGTCAGGTATTATCTA...............................................................................2211568.00156851326801745393425738171032001
.................................................................AGTAATA----CCTTTCGAACACA.......................................................................................................................................201947.009472120287227325320017000
.................................................................AGTAATA----CCTTTCGAACACAT......................................................................................................................................211893.00893927616601613884301137000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAT..............................................................................231399.0039919200003111912360000
..........................................................................................................................ATGAGTTCGTCAGGTATTA...................................................................................191358.00358030013000000100224000
...........................................................................................................................TGAGTTCGTCAGGTATTATC.................................................................................201269.00269431506311300710153000
.................................................................AGTAATA----CCTTTCGAACAC........................................................................................................................................191238.002380100228102000006000
.................................................................AGTAATA----CCTTTCGAACA.........................................................................................................................................181194.001940000185601001001000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAA..............................................................................231191.00191016150004151500144000
...........................................................................................................................TGAGTTCGTCAGGTATTAT..................................................................................191165.0016500002300010200139000
.................................................................AGTAATA----CCTTTCGAACACATGAAA..................................................................................................................................251136.001360106000341229841032000
...........................................................................................................................TGAGTTCGTCAGGTATTA...................................................................................181120.001200000117100000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTT...............................................................................221105.001050200000000000103000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCC................................................................................22184.00847552000000000002000
.................................................................AGTAATA----CCTTTCGAACACATGAT...................................................................................................................................24178.00782600383102100025000
.................................................................AGTAATA----CCTTTCGAACACATGT....................................................................................................................................23175.00750101000001020061000
.................................................................AGTAATA----CCTTTCGAACACATGAA...................................................................................................................................24172.0072032000542210053000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTT...............................................................................23172.00720120000000000060000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCA................................................................................22156.0056050000010010049000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTA...............................................................................23152.0052091010135130226000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAAA.............................................................................24145.00450410000214340116000
..........................................................................................................................ATGAGTTCGTCAGGTATTAA..................................................................................20138.0038020000000000036000
..........................................................................................................................ATGAGTTCGTCAGGTATTT...................................................................................19137.0037000000000000037000
..........................................................................................................................ATGAGTTCGTCAGGTATT....................................................................................18133.0033031024000003002000
.................................................................AGTAATA----CCTTTCGAACACATGAAAA.................................................................................................................................26128.0028011000122000021000
..........................................................................................................................ATGAGTTCGTCAGGTATTATT.................................................................................21127.0027101000000000025000
...........................................................................................................................TGAGTTCGTCAGGTATTATCA................................................................................21126.0026000000000000026000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCG................................................................................22124.0024216600000000000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATA.................................................................................21123.0023000000000000023000
.................................................................AGTAATA----CCTTTCGAACACATGC....................................................................................................................................23123.0023000000000000023000
..........................................................................................................................ATGAGTTCGTCAGGTATTATAA................................................................................22122.0022000000000000022000
...........................................................................................................................TGAGTTCGTCAGGTATTATCC................................................................................21119.0019311500000000000000
.................................................................AGTAATA----CCTTTCGAACACATGG....................................................................................................................................23116.0016012400000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATA.................................................................................20113.0013000000000000013000
.................................................................AGTAATA----CCTTTCGAACACATA.....................................................................................................................................22112.0012000000000000012000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAAAA............................................................................25110.001000010011312001000
...........................................................................................................................TGAGTTCGTCAGGTATTATT.................................................................................20210.0020000000000000020000
...........................................................................................................................TGAGTTCGTCAGGTATTATAA................................................................................21110.0010000000000000010000
...........................................................................................................................TGAGTTCGTCAGGTA......................................................................................15110.0010000000000010000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCG................................................................................2119.00903200010000003000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTTT..............................................................................2319.00903000000000006000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTTT..............................................................................2419.00904000000000005000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTATAA............................................................................2519.00900000000100008000
............................................................................................................................GAGTTCGTCAGGTATTATCT................................................................................2019.00900005000000004000
..................................................................GTAATA----CCTTTCGAACACATGA....................................................................................................................................2218.00800016010000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAC..............................................................................2318.00803100000002002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAG..............................................................................2317.00701001000000005000
..............................................................................................................................GTTCGTCAGGTATTATCT................................................................................1816.00600000000006000000
.....................................................................ATA----CCTTTCGAACACATG.....................................................................................................................................1816.00600000010005000000
..................................................................GTAATA----CCTTTCGAACACATG.....................................................................................................................................2116.00600002003000001000
...........................................................................................................................TGAGTTCGTCAGGTATTAA..................................................................................1915.00500000000000005000
..........................................................................................................................ATGAGTTCGTCAGGT.......................................................................................1515.00500000000004001000
..........................................................................................................................ATGAGTTCGTCAGGTA......................................................................................1615.00500000000005000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTATA.............................................................................2414.00400000000000004000
.........................................................................................................................CATGAGTTCGTCAGGTATTATC.................................................................................2214.00400000000000004000
.................................................................AGTAATA----CCTTTCGAACACAA......................................................................................................................................2114.00400000000001003000
.................................................................AGTAATA----CCTTTCGAACACATGTAA..................................................................................................................................2513.00300000000000003000
.........................................................................................................................CATGAGTTCGTCAGGTATTATCT................................................................................2313.00300000000000003000
....................................................................AATA----CCTTTCGAACACATGA....................................................................................................................................2013.00300000000002001000
.................................................................AGTAATA----CCTTTCGAACACATGCA...................................................................................................................................2413.00300000000000003000
..................................................................GTAATA----CCTTTCGAACACATGAT...................................................................................................................................2313.00301002000000000000
...................................................................TAATA----CCTTTCGAACACATGA....................................................................................................................................2113.00300001000000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTG...............................................................................2213.00301200000000000000
.................................................................AGTAATA----CCTTTCGAACACATGACA..................................................................................................................................2513.00300000000000003000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAA..............................................................................2413.00302000000000001000
...........................................................................................................................TGAGTTCGTCAGGTATTTA..................................................................................1922.50500000000000005000
.............................................................................................................................AGTTCGTCAGGTATTATCT................................................................................1912.00200101000000000000
.................................................................AGTAATA----CCTTTCGAACACATGAAC..................................................................................................................................2512.00200200000000000000
.................................................................AGTAATA----CCTTTCGAA...........................................................................................................................................1612.00200000000001001000
............................................................................................................................GAGTTCGTCAGGTATTATC.................................................................................1912.00200001000001000000
.................................................................AGTAATA----CCTTTCGAACACATGTA...................................................................................................................................2412.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCAT...............................................................................2312.00200000000000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATTA................................................................................2122.00400000000000004000
............................................................................CCTTTCGAACACATGA....................................................................................................................................1612.00200000000002000000
..................................................................GTAATA----CCTTTCGAACACAT......................................................................................................................................2012.00200001000000001000
...........................................................................................................................TGAGTTCGTCAGGTATT....................................................................................1712.00200000000002000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTC...............................................................................2312.00200100000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTTA..................................................................................2012.00200000000000002000
.................................................................AGTAATA----CCTTTCGAACACATT.....................................................................................................................................2212.00202000000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTAAA.................................................................................2012.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTG...............................................................................2312.00200000000001001000
..........................................................................................................................ATGAGTTCGTCAGGTATAT...................................................................................1912.00200000000000002000
............................................................................................................................GAGTTCGTCAGGTATTATCTA...............................................................................2112.00200001000000001000
....................................................................AATA----CCTTTCGAACACATG.....................................................................................................................................1912.00200000000002000000
.................................................................AGTAATA----CCTTTCGAACACATGATT..................................................................................................................................2512.00200000000000002000
.....................................................................ATA----CCTTTCGAACACATGA....................................................................................................................................1912.00200011000000000000
.................................................................AGTAATA----CCTTTCGAACACATGAG...................................................................................................................................2412.00200000000001001000
.................................................................AGTAATA----CCTTTCGAACACATGTAG..................................................................................................................................2512.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAAA.............................................................................2512.00200100010000000000
.................................................................AGTAATA----CCTTTCGAACACATGATA..................................................................................................................................2512.00200000001000001000
.................................................................AGTAATA----CCTTTCGAACACATGAC...................................................................................................................................2412.00202000000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTTA..............................................................................2321.50301000000001001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATTC................................................................................2211.00100100000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCAT...............................................................................2211.00100000000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTTA..............................................................................2411.00100000000000001000
............................................................................................TTTTCAG-TCAT----------------TCATGAGTTCGTCAGG........................................................................................2711.00100000000100000000
..........................................................................................................................ATGAGTTCGTCAGGTATTG...................................................................................1911.00100000000000001000
................................................................................................................................TCGTCAGGTATTATCT................................................................................1611.00100000000001000000
...................................................................TAATA----CCTTTCGAACACATGAT...................................................................................................................................2211.00100000000000001000
............................................................................................................................GAGTTCGTCAGGTATTATCTT...............................................................................2111.00100000000000001000
.................................................................AGTAATA----CCTTTCGAACACATGGA...................................................................................................................................2411.00100000000000001000
................................................................................................................................TCGTCAGGTATTATCTA...............................................................................1711.00100000000001000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAT..............................................................................2411.00100000000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATG.................................................................................2111.00100000000000001000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAGT.............................................................................2411.00100000010000000000
..................................................................GTAATA----CCTTTCGAACACATGAAAA.................................................................................................................................2511.00100000000000001000
..............................................................................................................................GTTCGTCAGGTATTATCTAT..............................................................................2011.00100000000001000000
.................................................................AGTAATA----CCTTTCGAACACAAA.....................................................................................................................................2211.00100000000000001000
.......................................................................A----CCTTTCGAACACATGA....................................................................................................................................1711.00100000000001000000
dm3
T-----------------------------------------ATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCAT----------------TCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCG--------TATGAGAAA-------------------TTACTTATGATGTACSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................ATAATA----CGTTTCGAACTAATGA....................................................................................................................................22243492.5086985000000000011710000000119881330030000000056349616731828121923311675030000111000000000000000004235383501358014417101290044001113831719911006700080000000000000111564210109005342213910215632370401311443893130240500014130900084113051100010012311430520002510154000000222100000010001946197394319388489148382444349314744416135514300720912239215301616147144726571153636783179711693537151020160111669471113481183092074411273224908104407995161242557224969810333925835136288229617564796818336435914187345411656878530395444433203271219693394
..................................................................ATAATA----CGTTTCGAACTAATG.....................................................................................................................................21217263.50345270000000000050000000034231480000100000026933310393432646451115000000000000000000000002319183004401013126019101402018106304781412400013000010301000200068000000275063133883631623334221030020010401100167111130840000012849299100021601140000002140002004041015626774393209667667688288110011000030030141315214847100109414022118138365134752605231213105841117115206135144331671251159162322121974829213911215428042701731220219516783931015144332782517027711563461738104450130
..........................................................................................................................ATTAGGTAGTTACGCATTATCT................................................................................22215955.5031911000001000001500000100223935132005000000003612663219548619111749381200000000000000000000000973601084110013019810460122620411234149011170100000000002000000000001412045295251115122950400000107000330300039080607100520688616882310060046122000007410300000014792147360711791351105176342120090000117040441125012033101000791222306832472324613201269542712144129081227164538662152134091225311642592443710976204186015572384391577520231357100231813157121010299040
..................................................................ATAATA----CGTTTCGAACTAAT......................................................................................................................................20211806.0023612000000000004000000003111600200000000000001400100000200000000000000000000000001589110000002100100601600002100000200000600000000000020001613000000003300211270033000001403000210400211030305000000666530000060019000000110000000010111613393383615429680035000000001896190017322012425102413162913360863002512413627040911656453115109101265034162114171536171932061142461740173227015008037340513122062227120
..........................................................................................................................ATTAGGTAGTTACGCATTATC.................................................................................2123949.007898000001000000000000001200664000000000000200001111001015510000000000000000000000032010000100000100110060004000300000100070000000000000000450000000003420000133100000002000000000001300000000002018203661000600325000000060000000005343817134805031302000010000010019009170041260510159108011200131037185230516750133178110011807632200182912324911436132204710310193133411949116011365221286295430
..........................................................................................................................ATTAGGTAGTTACGCATTAT..................................................................................2021670.00334000000000000000000000100386001000000000000000100000100000000000000000000000000010010000200000000200400000000000001000300000000000000000000000000000100003000000000002200000000010100000000300103133800008402830000000000000005106108701000000100200000000000004005400000303005000402021085121519967192001654010143121631006012822931044822462210128442010312000003162800
..................................................................ATAATA----CGTTTCGAACTAATGAA...................................................................................................................................2321168.502337000000000002000000003001000000000000000002010000001632000000000000000000000001101030000000010060030020000000000500010100000000000000100000000350305010000430000000000042050002406000300000004508300003106000000024000100000119321027234329264612740058033000000010207500391001001010013000011000196006402731037000118800001642810700131758141828001224617700003821040704701220021200
..................................................................ATAATA----CGTTTCGAACTAATGATC..................................................................................................................................242904.50180900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285524000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAA.......................................................................................................................................192691.0013820000000000000000000000040000000000000100001000000000000000000000000000000000110100000000100000000000000000000000000000000000000000033000000000000000011000000000000000102000200000000000011301000020050000000000000010000210003201007005000000000110111036002007041083003011000240231212110091922011000000100202002013690000109000001322200117200
...................................................................TAATA----CGTTTCGAACTAATGA....................................................................................................................................212528.001056000000000000000000006003000000000000101000200000103000000000000000000000000000000000000000000300000000000030001000000000000000000000000000000000010001030010000400000000000000000000000000626000060200000002000000000003814041257322200400000000000000001000100401301700200000032057292800004030001922100220340140205622901001101001010411100031100
...........................................................................................................................TTAGGTAGTTACGCATTATCT................................................................................212424.0084800001000000610000000701155000000000000000000010001000100000000000000000000000052120000401101010450117000203016522022200800000000000000000000000000000000000000000000000000000000110002000000005400250000440200000001100000000024122301010001000000000000000002003000000100001900300010023023100300001270000200300030202010024032000032000000010000001200
..................................................................ATAATA----CGTTTCGAACTAATGT....................................................................................................................................222369.507390000000000000000000000030000000000001000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000101201000000000000000000101000000000001502100001101300000012000000000111710100001000000000000001000310220000010000151000000000610132070011268000063720002037291500077320000187100000020000200310
..................................................................ATAATA----CGTTTCGAACTAATGAAA..................................................................................................................................242312.506250000000000000000000010100000000000001001000000010001000000000000000000000000000000000000000002001000002000000030002000020002000000000000000221000010000040000000000001002002143300050000005180430000603700000007000000000102903101237171335810001331200000000000120050000000000000000000002700230010000100005605200030100130012106000010000000120200000000
...................................................................TAATA----CGTTTCGAACTAATGAT...................................................................................................................................222167.0033400000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000010000000000000000000180000000000000000000000000010010000000000000000000000000000000000000000060300000000000000000000000000141001010031000100000000001010020000001001090000000000410181300001530000010000100010000000167000127000100010000000200
..........................................................................................................................ATTAGGTAGTTACGCATTATCTA...............................................................................232130.0026000000020001700000000500290000000000010000000000000010000000000000000000000000000003000100001002610700440100100201800190000000000000000100000000010000000010000000000000000000001000001000000040200008090000000300000000000450010110000000000000000000010000000000000000000100001300127250000100008000000003000000002100000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAATA.....................................................................................................................................212123.0024600000000000200000000000110000000000000000000000000000000000000000000000000000000000000000000002001000000000000010002000000000000000000000000000000000000000000000000000000000102000000000003101900001901200000000000000000011020030001000000000000000001100110000001010020000000000103150000002800000240001000705170000017000040000010110000000200
...................................................................TAATA----CGTTTCGAACTAATG.....................................................................................................................................202109.50219000000000000001000000003000000000000002000000000000000000000000000000000000000000000000010000200000100000000000000000000000000000001000000010000000000000000200000000000000010000000000000002000020100000000000000000007103000012000000000000000000002100000100005010000000010004110000930000000000000000100000148000023000000000000010100
...........................................................................................................................TTAGGTAGTTACGCATTATC.................................................................................202103.5020700000000000000000000000280000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001401400008011000000000000000000019200000000000000000000000000000100000100008000000000000000030000250000100000010010200021130000027010001000000001100
..................................................................ATAATA----CGTTTCGAACTAATGAAAA.................................................................................................................................25298.501970000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000030000000000000000000000101000400000000000001511400003018000000310000000000131011104752200003000000000000110090000000000000000000004400310010000000008030000000006300013100000000001040000000100
..................................................................ATAATA----CGTTTCGAACTAATGC....................................................................................................................................22296.501930000000000000000000000000000000000000000003000000030000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000101000000000000000000100000000000000000000000000000000000000000031000000001000000000000000030011001002000010000000000500747113000147000033010031316011010201900002000000000000000000
..................................................................ATAATA----CGTTTCGAACTAAG......................................................................................................................................20295.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000100000000000000000000018300000000000000000000000300001000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTA...................................................................................19289.0017800000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003015000070230000000000000000000610010000000000000000000000000110000000000100301000001001511000046000030000000004321000114000018000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATT.....................................................................................................................................21281.501630000000000000000000000000010000000000000010000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000010000000000000000000010001020020007001201202000000000000002010000101000010000000000001000001000008000000000000001100
..................................................................ATAATA----CGTTTCGAACTA........................................................................................................................................18278.501570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000022330000000000000000000000000000000000010000000000000000000100000000000000000000000000151000100000000000000000000000000000000010040010000000401030100005700002000000100201001010100000000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATGG....................................................................................................................................22254.00108000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000002100000000200100000000000000002000000000001001000000040001707000031000021110001000001000031700008000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATGAT...................................................................................................................................23249.0098000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000102000010100000002000000000002002120002000011700000000000000000000000000100000000002014121400002200000000000001000000031400002000000010000000000
..................................................................ATAATA----CGTTTCGAACTAATC.....................................................................................................................................21248.009600000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000020100200000000001020610000045000000000000101001000002600002000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATCTATC.............................................................................25246.009200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAAA......................................................................................................................................20239.007800000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000040100000010000000000000000000300000000010000000000000000100100000000000100100000000000300000026000000000000000000000002500005000000000000001100
..................................................................ATAATA----CGTTTCGAACTAATGAG...................................................................................................................................23235.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000070100000000000000000000000000000000000000000102000000300000000000000000001010000002000000000000000000000000000000001000000000020009000000100004101000301103700014400004000003000000000000
...................................................................TAATA----CGTTTCGAACTAAT......................................................................................................................................19232.50650000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000001000000000000000000000001000010030000000000000011000004300000000000000001000001300005000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATCC................................................................................22232.006400000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000011020000201000000000000000000070000000001000000000000000000000000000000010010000000100060100001700000000001001100000000200004000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATA.................................................................................21230.006000000000000300000000000140000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000002020000007000000000000000000010000000000000000000000000000000000000000000000000000100130000001700000000000000100100101100000000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATT....................................................................................18228.505700000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000001030000000020000000000000000000151000000000000000000000000000001000000000010000000000000000000002000004010000000101000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAATGAAC..................................................................................................................................24228.50570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000459000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000
.................................................................AATAATA----CGTTTCGAACTAATG.....................................................................................................................................22225.50510000000000000000000010000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000200010000000000000000000000000000000040000000001500060000001500002000000000000100000400003000000010000000100
..........................................................................................................................ATTAGGTAGTTACGCATTATCA................................................................................22223.00460000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000206000000700000000000000000004000000000000010000000000000000000000000001000000000000001000000400000020000000000000000100000000000000000000000
...........................................................................................................................TTAGGTAGTTACGCATTAT..................................................................................19223.00460000000000000000000000040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004060000007000000000000000000010000000000000000000000000000001000001000030100000000000000000001000000000000000000100000400001000000010000000000
.................................................................AATAATA----CGTTTCGAACTAAT......................................................................................................................................21221.50430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000102000000000000000000000000000001000010000000000000020000002400000200000000000000000500003000000000000000000
.................................................................AATAATA----CGTTTCGAACTAATGA....................................................................................................................................23220.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000110201110000000000000000000000000000000010000000000000230000001600000200000100001000000300001000000000000000100
...................................................................TAATA----CGTTTCGAACTAATGAA...................................................................................................................................22219.5039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000010100000010000000000006001010212000000000000000002000000000000001000000000000013010000100001100000000100000000100001000000010100000000
..................................................................ATAATA----CGTTTCGAACTAATGAC...................................................................................................................................23219.5039000000000000000000000000000000000000000000100000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000004000010001000085000000000000000100000000000000000000020002000000400002000000001000000001300000000000000000000000
...........................................................................................................................TTAGGTAGTTACGCATTATCTA...............................................................................22216.0032000000000003100000000002000000000000000000000000100000000000000000000000000000000000000000100500300010000000006000100000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000102000000000000010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droBia1
T-----------------------------------------------------TCCAATCATTAGAAAGTT----CGTTACGTACTATT--------------TGCTCGGTTTAAAAAC-AAATAGTACGTGTCGGATTTTCAAATTATTGCTTACAATCAACATGCTCGAGAGCATTGAGATCTTTAAAACAAAGTGTTGTGCCTAAGTACCAGTGATTTTASizeHit CountTotal NormTotal
No Reads
droTak1
T-----------------------------------------------------TCCAATCATTTAATAGTC----CGATTCGTTCTTAG--------------TGCTTATTTTGAAAATGCAGTAGTGCGTTTCGGATTATTCAATTATTGTTAACAAACATCGAG-----A--------GATCTTGTA-------------------CTTAAAACGATATAASizeHit CountTotal NormTotal
No Reads
droFic1
A-TATACCTATAACAAATATTA-------------TTTACCCATC---A-TTGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTA----------------GTTTGGGAGCTTTGG---TTATAACATCAATGTAA-CAATTGA----CTACAA--------ATTAACAAA-------------------TCAAT--TTATATGTSizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:27 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4690:1633090-1633252 - der_27 confident AGTGTA----TAGCTTAAA---TCCACCGGAATTGTGTG---ATA---TTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCAT----------------TCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCG--------TGTGAGAAA-------------------TTGCTCATGATATGC
droSec2 scaffold_4:2462183-2462350 + dse_1860 G-TGAA----TGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCAT----------------TCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTAC
droSim2 x:3957161-3957328 - dsi-mir-983 Known_mirbase G-TGAA----TGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCAT----------------TCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTAC
dm3 chrX:4262305-4262440 - dme-mir-983-1 Known_mirbase T-----------------------------------------ATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCAT----------------TCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCG--------TATGAGAAA-------------------TTACTTATGATGTAC
droBia1 scf7180000301703:495529-495680 + T-----------------------------------------------------TCCAATCATTAGAAAGTT----CGTTACGTACTATT--------------TGCTCGGTTTAAAAAC-AAATAGTACGTGTCGGATTTTCAAATTATTGCTTACAATCAACATGCTCGAGAGCATTGAGATCTTTAAAACAAAGTGTTGTGCCTAAGTACCAGTGATTTTA
droTak1 scf7180000415394:1160794-1160914 + T-----------------------------------------------------TCCAATCATTTAATAGTC----CGATTCGTTCTTAG--------------TGCTTATTTTGAAAATGCAGTAGTGCGTTTCGGATTATTCAATTATTGTTAACAAACATCGAG-----A--------GATCTTGTA-------------------CTTAAAACGATATAA
droFic1 scf7180000453901:210004-210155 + A-TATACCTATAACAAATATTA-------------TTTACCCATC---A-TTGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTA----------------GTTTGGGAGCTTTGG---TTATAACATCAATGTAA-CAATTGA----CTACAA--------ATTAACAAA-------------------TCAAT--TTATATGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AGTGTA----TAGCTTAAA---TCCACCGGAATTGTGTG---ATA---TTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCAT----------------TCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCG--------TGTGAGAAA-------------------TTGCTCATGATATGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................................................AATGCGAAACGGATTATTAAG..............................................................................2113196.00319622013228523070
.............................................................................................................................AATGCGAAACGGATTATTAAGT.............................................................................2212871.00287128481325472710
.............................................................................................................................AATGCGAAACGGATTATTAAGTT............................................................................231139.001390000128110
.............................................................................................................................AATGCGAAACGGATTATTAA...............................................................................202127.502553020223270
.............................................................................................................................AATGCGAAACGGATTATTAAGTA............................................................................23160.006000105360
...........................................................................................................................TAAATGCGAAACGGATTATTAA...............................................................................22148.004800004080
.............................................................................................................................AATGCGAAACGGATTATTAAGA.............................................................................22144.0044000034100
............................................................................................................................AAATGCGAAACGGATTATTAAG..............................................................................22141.004110013450
...........................................................................................................................TAAATGCGAAACGGATTATTAAG..............................................................................23137.003700103150
...............................................................TTAATAATT----CGATTCGAAGTTA.......................................................................................................................................22132.003231002620
..............................................................................................................................ATGCGAAACGGATTATTAAGT.............................................................................21121.002120001900
...........................................................................................................................TAAATGCGAAACGGATTATTAAA..............................................................................23213.002600002060
..............................................................................................................................ATGCGAAACGGATTATTAAG..............................................................................20112.00122000820
.............................................................................................................................AATGCGAAACGGATTATTAAGTTA...........................................................................2417.0070000610
.............................................................................................................................AATGCGAAACGGATTATTAAGTTT...........................................................................2415.0050010220
...........................................................................................................................TAAATGCGAAACGGATTATTA................................................................................2114.0040000400
.............................................................................................................................AATGCGAAACGGATTATTA................................................................................1924.0081000610
.............................................................................................................................AATGCGAAACGGATTATT.................................................................................1823.5071000060
.............................................................................................................................AATGCGAAACGGATTATTAAGC.............................................................................2223.0060000510
.............................................................................................................................AATGCGAAACGGATTATTAAGTC............................................................................2313.0030000210
...........................................................................................................................TAAATGCGAAACGGATTATT.................................................................................2013.0031000110
............................................................................................................................AAATGCGAAACGGATTATTAA...............................................................................2122.5050000410
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAA..........................................................................2512.0020000200
................................................................................................................................GCGAAACGGATTATTAAG..............................................................................1812.0020000200
............................................................................................................................AAATGCGAAACGGATTATTAAGT.............................................................................2312.0020000110
...........................................................................................................................TAAATGCGAAACGGATTATTAAGT.............................................................................2412.0020000200
.............................................................................................................................AATGCGAAACGGATTATTAAGTG............................................................................2312.0020000110
...............................................................................................................................TGCGAAACGGATTATTAAG..............................................................................1912.0020000200
...............................................................................................................................TGCGAAACGGATTATTAAGT.............................................................................2012.0020000200
.............................................................................................................................AATGCGAAACGGATTATTAAT..............................................................................2121.5030000120
...........................................................................................................................TAAATGCGAAACGGATTATTAAAA.............................................................................2421.5030000210
.............................................................................................................................AATGCGAAACGGATTATTAAGAA............................................................................2311.0010000010
.............................................................................................................................AATGCGAAACGGATTATTT................................................................................1921.0020000020
...........................................................................................................................TAAATGCGAAACGGATTATTAAT..............................................................................2311.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAAA.........................................................................2611.0010000100
...............................................................TTAATAATT----CGATTCGAAGTTAT......................................................................................................................................2311.0010000100
...............................................................TTAATAATT----CGATTCGAAGTTAA......................................................................................................................................2311.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTAC...........................................................................2411.0010000100
...........................................................................................................................TAAATGCGAAACGGATTATTAAAAA............................................................................2521.0020000200
...............................................................TTAATAATT----CGATTCGAAGTTATGTGCTT................................................................................................................................2911.0011000000
.................................................................AATAATT----CGATTCGAAGTT........................................................................................................................................1911.0011000000
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAT..........................................................................2511.0010000100
...........................................................................................................................TAAATGCGAAACGGATTATTAAGA.............................................................................2411.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTAT...........................................................................2411.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAT...............................................................................2020.5010000010
.............................................................................................................................AATGCGAAACGGATTATTAGT..............................................................................2120.5010000100
.............................................................................................................................AATGCGAAACGGATTATTAAC..............................................................................2120.5010000010
............................................................................................................................AAATGCGAAACGGATTATT.................................................................................1920.5010000100
............................................................................................................................AAATGCGAAACGGATTATTA................................................................................2020.5010010000
droSec2
G-TGAA----TGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCAT----------------TCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTACSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................TGAGTTCGTTAGGTATTATCT................................................................................211361.00361832252330
...........................................................................................................................TGAGTTCGTTAGGTATTATCTA...............................................................................221224.00224631341017
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAA..............................................................................23175.007555785
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAT..............................................................................23171.007166410
..........................................................................................................................ATGAGTTCGTTAGGTATTATCT................................................................................22165.0065105122
...........................................................................................................................TGAGTTCGTTAGGTATTATC.................................................................................20132.003212614
.................................................................AGTAATA----CCTTTCGAACATATG.....................................................................................................................................22132.003225610
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAAA.............................................................................24126.002651830
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAG..............................................................................23123.002302201
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGT.............................................................................24119.00199505
.................................................................AGTAATA----CCTTTCGAACATATGA....................................................................................................................................23118.001818000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAAAA............................................................................25114.001411210
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAC..............................................................................23114.001411210
..........................................................................................................................ATGAGTTCGTTAGGTATTATC.................................................................................21112.00121812
.................................................................AGTAATA----CCTTTCGAACATAT......................................................................................................................................2116.0061401
...........................................................................................................................TGAGTTCGTTAGGTATTATCTATA.............................................................................2415.0050500
............................................................................................................................GAGTTCGTTAGGTATTATCT................................................................................2015.0055000
...............................................................TTAGTAATA----CCTTTCGAACATA.......................................................................................................................................2215.0054100
..........................................................................................................................ATGAGTTCGTTAGGTATTAT..................................................................................2014.0040400
.............................................................................................................................AGTTCGTTAGGTATTATCTAG..............................................................................2113.0030300
............................................................................................................................GAGTTCGTTAGGTATTATCTAT..............................................................................2213.0032100
...........................................................................................................................TGAGTTCGTTAGGTATTAT..................................................................................1913.0030210
.............................................................................................................................AGTTCGTTAGGTATTATCTAGT.............................................................................2213.0031200
................................................................TAGTAATA----CCTTTCGAACATAT......................................................................................................................................2213.0033000
..........................................................................................................................ATGAGTTCGTTAGGTATTATCTAA..............................................................................2412.0020200
............................................................................................................................GAGTTCGTTAGGTATTATCTAG..............................................................................2212.0021100
..................................................................GTAATA----CCTTTCGAACATATG.....................................................................................................................................2112.0022000
.................................................................AGTAATA----CCTTTCGAACATATGT....................................................................................................................................2312.0020200
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGA.............................................................................2411.0010100
..................................................................GTAATA----CCTTTCGAACATAT......................................................................................................................................2011.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTATC.............................................................................2411.0010100
..........................................................................................................................ATGAGTTCGTTAGGTATTATCTT...............................................................................2311.0010100
...........................................................................................................................TGAGTTCGTTAGGTATTAA..................................................................................1911.0010100
...............................................................TTAGTAATA----CCTTTCGAACAT........................................................................................................................................2111.0010001
.................................................................AGTAATA----CCTTTCGAACATA.......................................................................................................................................2011.0011000
...............................................................TTAGTAATA----CCTTTCGAACA.........................................................................................................................................2011.0011000
..........................................................................................................................ATGAGTTCGTTAGGTATTA...................................................................................1911.0010001
...........................................................................................................................TGAGTTCGTTAGGTATTATCTGT..............................................................................2311.0010100
.............................................................................................................................AGTTCGTTAGGTATTATCTAGG.............................................................................2211.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGTT............................................................................2511.0010100
............................................................................................................................GAGTTCGTTAGGTATTATCTA...............................................................................2111.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGTA............................................................................2511.0010100
droSim2
G-TGAA----TGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCAT----------------TCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTACSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................TGAGTTCGTCAGGTATTATCT................................................................................2116722.0067222734057122783325179602295887000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCT................................................................................2216446.006446100122939413973222143830184161028
..........................................................................................................................ATGAGTTCGTCAGGTATTATC.................................................................................2112808.002808253536301081543062112181001
.................................................................AGTAATA----CCTTTCGAACACATG.....................................................................................................................................2212195.00219524339106916174193101683981469000
.................................................................AGTAATA----CCTTTCGAACACATGA....................................................................................................................................2311858.001858228267694171239243252754765000
..........................................................................................................................ATGAGTTCGTCAGGTATTAT..................................................................................2011737.001737040021103101011704001
...........................................................................................................................TGAGTTCGTCAGGTATTATCTA...............................................................................2211568.00156851326801745393425738171032001
.................................................................AGTAATA----CCTTTCGAACACA.......................................................................................................................................201947.009472120287227325320017000
.................................................................AGTAATA----CCTTTCGAACACAT......................................................................................................................................211893.00893927616601613884301137000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAT..............................................................................231399.0039919200003111912360000
..........................................................................................................................ATGAGTTCGTCAGGTATTA...................................................................................191358.00358030013000000100224000
...........................................................................................................................TGAGTTCGTCAGGTATTATC.................................................................................201269.00269431506311300710153000
.................................................................AGTAATA----CCTTTCGAACAC........................................................................................................................................191238.002380100228102000006000
.................................................................AGTAATA----CCTTTCGAACA.........................................................................................................................................181194.001940000185601001001000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAA..............................................................................231191.00191016150004151500144000
...........................................................................................................................TGAGTTCGTCAGGTATTAT..................................................................................191165.0016500002300010200139000
.................................................................AGTAATA----CCTTTCGAACACATGAAA..................................................................................................................................251136.001360106000341229841032000
...........................................................................................................................TGAGTTCGTCAGGTATTA...................................................................................181120.001200000117100000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTT...............................................................................221105.001050200000000000103000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCC................................................................................22184.00847552000000000002000
.................................................................AGTAATA----CCTTTCGAACACATGAT...................................................................................................................................24178.00782600383102100025000
.................................................................AGTAATA----CCTTTCGAACACATGT....................................................................................................................................23175.00750101000001020061000
.................................................................AGTAATA----CCTTTCGAACACATGAA...................................................................................................................................24172.0072032000542210053000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTT...............................................................................23172.00720120000000000060000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCA................................................................................22156.0056050000010010049000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTA...............................................................................23152.0052091010135130226000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAAA.............................................................................24145.00450410000214340116000
..........................................................................................................................ATGAGTTCGTCAGGTATTAA..................................................................................20138.0038020000000000036000
..........................................................................................................................ATGAGTTCGTCAGGTATTT...................................................................................19137.0037000000000000037000
..........................................................................................................................ATGAGTTCGTCAGGTATT....................................................................................18133.0033031024000003002000
.................................................................AGTAATA----CCTTTCGAACACATGAAAA.................................................................................................................................26128.0028011000122000021000
..........................................................................................................................ATGAGTTCGTCAGGTATTATT.................................................................................21127.0027101000000000025000
...........................................................................................................................TGAGTTCGTCAGGTATTATCA................................................................................21126.0026000000000000026000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCG................................................................................22124.0024216600000000000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATA.................................................................................21123.0023000000000000023000
.................................................................AGTAATA----CCTTTCGAACACATGC....................................................................................................................................23123.0023000000000000023000
..........................................................................................................................ATGAGTTCGTCAGGTATTATAA................................................................................22122.0022000000000000022000
...........................................................................................................................TGAGTTCGTCAGGTATTATCC................................................................................21119.0019311500000000000000
.................................................................AGTAATA----CCTTTCGAACACATGG....................................................................................................................................23116.0016012400000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATA.................................................................................20113.0013000000000000013000
.................................................................AGTAATA----CCTTTCGAACACATA.....................................................................................................................................22112.0012000000000000012000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAAAA............................................................................25110.001000010011312001000
...........................................................................................................................TGAGTTCGTCAGGTATTATT.................................................................................20210.0020000000000000020000
...........................................................................................................................TGAGTTCGTCAGGTATTATAA................................................................................21110.0010000000000000010000
...........................................................................................................................TGAGTTCGTCAGGTA......................................................................................15110.0010000000000010000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCG................................................................................2119.00903200010000003000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTTT..............................................................................2319.00903000000000006000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTTT..............................................................................2419.00904000000000005000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTATAA............................................................................2519.00900000000100008000
............................................................................................................................GAGTTCGTCAGGTATTATCT................................................................................2019.00900005000000004000
..................................................................GTAATA----CCTTTCGAACACATGA....................................................................................................................................2218.00800016010000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAC..............................................................................2318.00803100000002002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAG..............................................................................2317.00701001000000005000
..............................................................................................................................GTTCGTCAGGTATTATCT................................................................................1816.00600000000006000000
.....................................................................ATA----CCTTTCGAACACATG.....................................................................................................................................1816.00600000010005000000
..................................................................GTAATA----CCTTTCGAACACATG.....................................................................................................................................2116.00600002003000001000
...........................................................................................................................TGAGTTCGTCAGGTATTAA..................................................................................1915.00500000000000005000
..........................................................................................................................ATGAGTTCGTCAGGT.......................................................................................1515.00500000000004001000
..........................................................................................................................ATGAGTTCGTCAGGTA......................................................................................1615.00500000000005000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTATA.............................................................................2414.00400000000000004000
.........................................................................................................................CATGAGTTCGTCAGGTATTATC.................................................................................2214.00400000000000004000
.................................................................AGTAATA----CCTTTCGAACACAA......................................................................................................................................2114.00400000000001003000
.................................................................AGTAATA----CCTTTCGAACACATGTAA..................................................................................................................................2513.00300000000000003000
.........................................................................................................................CATGAGTTCGTCAGGTATTATCT................................................................................2313.00300000000000003000
....................................................................AATA----CCTTTCGAACACATGA....................................................................................................................................2013.00300000000002001000
.................................................................AGTAATA----CCTTTCGAACACATGCA...................................................................................................................................2413.00300000000000003000
..................................................................GTAATA----CCTTTCGAACACATGAT...................................................................................................................................2313.00301002000000000000
...................................................................TAATA----CCTTTCGAACACATGA....................................................................................................................................2113.00300001000000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTG...............................................................................2213.00301200000000000000
.................................................................AGTAATA----CCTTTCGAACACATGACA..................................................................................................................................2513.00300000000000003000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAA..............................................................................2413.00302000000000001000
...........................................................................................................................TGAGTTCGTCAGGTATTTA..................................................................................1922.50500000000000005000
.............................................................................................................................AGTTCGTCAGGTATTATCT................................................................................1912.00200101000000000000
.................................................................AGTAATA----CCTTTCGAACACATGAAC..................................................................................................................................2512.00200200000000000000
.................................................................AGTAATA----CCTTTCGAA...........................................................................................................................................1612.00200000000001001000
............................................................................................................................GAGTTCGTCAGGTATTATC.................................................................................1912.00200001000001000000
.................................................................AGTAATA----CCTTTCGAACACATGTA...................................................................................................................................2412.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCAT...............................................................................2312.00200000000000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATTA................................................................................2122.00400000000000004000
............................................................................CCTTTCGAACACATGA....................................................................................................................................1612.00200000000002000000
..................................................................GTAATA----CCTTTCGAACACAT......................................................................................................................................2012.00200001000000001000
...........................................................................................................................TGAGTTCGTCAGGTATT....................................................................................1712.00200000000002000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTC...............................................................................2312.00200100000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTTA..................................................................................2012.00200000000000002000
.................................................................AGTAATA----CCTTTCGAACACATT.....................................................................................................................................2212.00202000000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTAAA.................................................................................2012.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTG...............................................................................2312.00200000000001001000
..........................................................................................................................ATGAGTTCGTCAGGTATAT...................................................................................1912.00200000000000002000
............................................................................................................................GAGTTCGTCAGGTATTATCTA...............................................................................2112.00200001000000001000
....................................................................AATA----CCTTTCGAACACATG.....................................................................................................................................1912.00200000000002000000
.................................................................AGTAATA----CCTTTCGAACACATGATT..................................................................................................................................2512.00200000000000002000
.....................................................................ATA----CCTTTCGAACACATGA....................................................................................................................................1912.00200011000000000000
.................................................................AGTAATA----CCTTTCGAACACATGAG...................................................................................................................................2412.00200000000001001000
.................................................................AGTAATA----CCTTTCGAACACATGTAG..................................................................................................................................2512.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAAA.............................................................................2512.00200100010000000000
.................................................................AGTAATA----CCTTTCGAACACATGATA..................................................................................................................................2512.00200000001000001000
.................................................................AGTAATA----CCTTTCGAACACATGAC...................................................................................................................................2412.00202000000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTTA..............................................................................2321.50301000000001001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATTC................................................................................2211.00100100000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCAT...............................................................................2211.00100000000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTTA..............................................................................2411.00100000000000001000
............................................................................................TTTTCAG-TCAT----------------TCATGAGTTCGTCAGG........................................................................................2711.00100000000100000000
..........................................................................................................................ATGAGTTCGTCAGGTATTG...................................................................................1911.00100000000000001000
................................................................................................................................TCGTCAGGTATTATCT................................................................................1611.00100000000001000000
...................................................................TAATA----CCTTTCGAACACATGAT...................................................................................................................................2211.00100000000000001000
............................................................................................................................GAGTTCGTCAGGTATTATCTT...............................................................................2111.00100000000000001000
.................................................................AGTAATA----CCTTTCGAACACATGGA...................................................................................................................................2411.00100000000000001000
................................................................................................................................TCGTCAGGTATTATCTA...............................................................................1711.00100000000001000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAT..............................................................................2411.00100000000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATG.................................................................................2111.00100000000000001000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAGT.............................................................................2411.00100000010000000000
..................................................................GTAATA----CCTTTCGAACACATGAAAA.................................................................................................................................2511.00100000000000001000
..............................................................................................................................GTTCGTCAGGTATTATCTAT..............................................................................2011.00100000000001000000
.................................................................AGTAATA----CCTTTCGAACACAAA.....................................................................................................................................2211.00100000000000001000
.......................................................................A----CCTTTCGAACACATGA....................................................................................................................................1711.00100000000001000000
dm3
T-----------------------------------------ATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCAT----------------TCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCG--------TATGAGAAA-------------------TTACTTATGATGTACSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................ATAATA----CGTTTCGAACTAATGA....................................................................................................................................22243492.5086985000000000011710000000119881330030000000056349616731828121923311675030000111000000000000000004235383501358014417101290044001113831719911006700080000000000000111564210109005342213910215632370401311443893130240500014130900084113051100010012311430520002510154000000222100000010001946197394319388489148382444349314744416135514300720912239215301616147144726571153636783179711693537151020160111669471113481183092074411273224908104407995161242557224969810333925835136288229617564796818336435914187345411656878530395444433203271219693394
..................................................................ATAATA----CGTTTCGAACTAATG.....................................................................................................................................21217263.50345270000000000050000000034231480000100000026933310393432646451115000000000000000000000002319183004401013126019101402018106304781412400013000010301000200068000000275063133883631623334221030020010401100167111130840000012849299100021601140000002140002004041015626774393209667667688288110011000030030141315214847100109414022118138365134752605231213105841117115206135144331671251159162322121974829213911215428042701731220219516783931015144332782517027711563461738104450130
..........................................................................................................................ATTAGGTAGTTACGCATTATCT................................................................................22215955.5031911000001000001500000100223935132005000000003612663219548619111749381200000000000000000000000973601084110013019810460122620411234149011170100000000002000000000001412045295251115122950400000107000330300039080607100520688616882310060046122000007410300000014792147360711791351105176342120090000117040441125012033101000791222306832472324613201269542712144129081227164538662152134091225311642592443710976204186015572384391577520231357100231813157121010299040
..................................................................ATAATA----CGTTTCGAACTAAT......................................................................................................................................20211806.0023612000000000004000000003111600200000000000001400100000200000000000000000000000001589110000002100100601600002100000200000600000000000020001613000000003300211270033000001403000210400211030305000000666530000060019000000110000000010111613393383615429680035000000001896190017322012425102413162913360863002512413627040911656453115109101265034162114171536171932061142461740173227015008037340513122062227120
..........................................................................................................................ATTAGGTAGTTACGCATTATC.................................................................................2123949.007898000001000000000000001200664000000000000200001111001015510000000000000000000000032010000100000100110060004000300000100070000000000000000450000000003420000133100000002000000000001300000000002018203661000600325000000060000000005343817134805031302000010000010019009170041260510159108011200131037185230516750133178110011807632200182912324911436132204710310193133411949116011365221286295430
..........................................................................................................................ATTAGGTAGTTACGCATTAT..................................................................................2021670.00334000000000000000000000100386001000000000000000100000100000000000000000000000000010010000200000000200400000000000001000300000000000000000000000000000100003000000000002200000000010100000000300103133800008402830000000000000005106108701000000100200000000000004005400000303005000402021085121519967192001654010143121631006012822931044822462210128442010312000003162800
..................................................................ATAATA----CGTTTCGAACTAATGAA...................................................................................................................................2321168.502337000000000002000000003001000000000000000002010000001632000000000000000000000001101030000000010060030020000000000500010100000000000000100000000350305010000430000000000042050002406000300000004508300003106000000024000100000119321027234329264612740058033000000010207500391001001010013000011000196006402731037000118800001642810700131758141828001224617700003821040704701220021200
..................................................................ATAATA----CGTTTCGAACTAATGATC..................................................................................................................................242904.50180900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285524000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAA.......................................................................................................................................192691.0013820000000000000000000000040000000000000100001000000000000000000000000000000000110100000000100000000000000000000000000000000000000000033000000000000000011000000000000000102000200000000000011301000020050000000000000010000210003201007005000000000110111036002007041083003011000240231212110091922011000000100202002013690000109000001322200117200
...................................................................TAATA----CGTTTCGAACTAATGA....................................................................................................................................212528.001056000000000000000000006003000000000000101000200000103000000000000000000000000000000000000000000300000000000030001000000000000000000000000000000000010001030010000400000000000000000000000000626000060200000002000000000003814041257322200400000000000000001000100401301700200000032057292800004030001922100220340140205622901001101001010411100031100
...........................................................................................................................TTAGGTAGTTACGCATTATCT................................................................................212424.0084800001000000610000000701155000000000000000000010001000100000000000000000000000052120000401101010450117000203016522022200800000000000000000000000000000000000000000000000000000000110002000000005400250000440200000001100000000024122301010001000000000000000002003000000100001900300010023023100300001270000200300030202010024032000032000000010000001200
..................................................................ATAATA----CGTTTCGAACTAATGT....................................................................................................................................222369.507390000000000000000000000030000000000001000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000101201000000000000000000101000000000001502100001101300000012000000000111710100001000000000000001000310220000010000151000000000610132070011268000063720002037291500077320000187100000020000200310
..................................................................ATAATA----CGTTTCGAACTAATGAAA..................................................................................................................................242312.506250000000000000000000010100000000000001001000000010001000000000000000000000000000000000000000002001000002000000030002000020002000000000000000221000010000040000000000001002002143300050000005180430000603700000007000000000102903101237171335810001331200000000000120050000000000000000000002700230010000100005605200030100130012106000010000000120200000000
...................................................................TAATA----CGTTTCGAACTAATGAT...................................................................................................................................222167.0033400000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000010000000000000000000180000000000000000000000000010010000000000000000000000000000000000000000060300000000000000000000000000141001010031000100000000001010020000001001090000000000410181300001530000010000100010000000167000127000100010000000200
..........................................................................................................................ATTAGGTAGTTACGCATTATCTA...............................................................................232130.0026000000020001700000000500290000000000010000000000000010000000000000000000000000000003000100001002610700440100100201800190000000000000000100000000010000000010000000000000000000001000001000000040200008090000000300000000000450010110000000000000000000010000000000000000000100001300127250000100008000000003000000002100000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAATA.....................................................................................................................................212123.0024600000000000200000000000110000000000000000000000000000000000000000000000000000000000000000000002001000000000000010002000000000000000000000000000000000000000000000000000000000102000000000003101900001901200000000000000000011020030001000000000000000001100110000001010020000000000103150000002800000240001000705170000017000040000010110000000200
...................................................................TAATA----CGTTTCGAACTAATG.....................................................................................................................................202109.50219000000000000001000000003000000000000002000000000000000000000000000000000000000000000000010000200000100000000000000000000000000000001000000010000000000000000200000000000000010000000000000002000020100000000000000000007103000012000000000000000000002100000100005010000000010004110000930000000000000000100000148000023000000000000010100
...........................................................................................................................TTAGGTAGTTACGCATTATC.................................................................................202103.5020700000000000000000000000280000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001401400008011000000000000000000019200000000000000000000000000000100000100008000000000000000030000250000100000010010200021130000027010001000000001100
..................................................................ATAATA----CGTTTCGAACTAATGAAAA.................................................................................................................................25298.501970000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000030000000000000000000000101000400000000000001511400003018000000310000000000131011104752200003000000000000110090000000000000000000004400310010000000008030000000006300013100000000001040000000100
..................................................................ATAATA----CGTTTCGAACTAATGC....................................................................................................................................22296.501930000000000000000000000000000000000000000003000000030000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000101000000000000000000100000000000000000000000000000000000000000031000000001000000000000000030011001002000010000000000500747113000147000033010031316011010201900002000000000000000000
..................................................................ATAATA----CGTTTCGAACTAAG......................................................................................................................................20295.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000100000000000000000000018300000000000000000000000300001000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTA...................................................................................19289.0017800000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003015000070230000000000000000000610010000000000000000000000000110000000000100301000001001511000046000030000000004321000114000018000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATT.....................................................................................................................................21281.501630000000000000000000000000010000000000000010000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000010000000000000000000010001020020007001201202000000000000002010000101000010000000000001000001000008000000000000001100
..................................................................ATAATA----CGTTTCGAACTA........................................................................................................................................18278.501570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000022330000000000000000000000000000000000010000000000000000000100000000000000000000000000151000100000000000000000000000000000000010040010000000401030100005700002000000100201001010100000000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATGG....................................................................................................................................22254.00108000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000002100000000200100000000000000002000000000001001000000040001707000031000021110001000001000031700008000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATGAT...................................................................................................................................23249.0098000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000102000010100000002000000000002002120002000011700000000000000000000000000100000000002014121400002200000000000001000000031400002000000010000000000
..................................................................ATAATA----CGTTTCGAACTAATC.....................................................................................................................................21248.009600000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000020100200000000001020610000045000000000000101001000002600002000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATCTATC.............................................................................25246.009200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAAA......................................................................................................................................20239.007800000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000040100000010000000000000000000300000000010000000000000000100100000000000100100000000000300000026000000000000000000000002500005000000000000001100
..................................................................ATAATA----CGTTTCGAACTAATGAG...................................................................................................................................23235.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000070100000000000000000000000000000000000000000102000000300000000000000000001010000002000000000000000000000000000000001000000000020009000000100004101000301103700014400004000003000000000000
...................................................................TAATA----CGTTTCGAACTAAT......................................................................................................................................19232.50650000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000001000000000000000000000001000010030000000000000011000004300000000000000001000001300005000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATCC................................................................................22232.006400000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000011020000201000000000000000000070000000001000000000000000000000000000000010010000000100060100001700000000001001100000000200004000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATA.................................................................................21230.006000000000000300000000000140000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000002020000007000000000000000000010000000000000000000000000000000000000000000000000000100130000001700000000000000100100101100000000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATT....................................................................................18228.505700000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000001030000000020000000000000000000151000000000000000000000000000001000000000010000000000000000000002000004010000000101000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAATGAAC..................................................................................................................................24228.50570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000459000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000
.................................................................AATAATA----CGTTTCGAACTAATG.....................................................................................................................................22225.50510000000000000000000010000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000200010000000000000000000000000000000040000000001500060000001500002000000000000100000400003000000010000000100
..........................................................................................................................ATTAGGTAGTTACGCATTATCA................................................................................22223.00460000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000206000000700000000000000000004000000000000010000000000000000000000000001000000000000001000000400000020000000000000000100000000000000000000000
...........................................................................................................................TTAGGTAGTTACGCATTAT..................................................................................19223.00460000000000000000000000040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004060000007000000000000000000010000000000000000000000000000001000001000030100000000000000000001000000000000000000100000400001000000010000000000
.................................................................AATAATA----CGTTTCGAACTAAT......................................................................................................................................21221.50430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000102000000000000000000000000000001000010000000000000020000002400000200000000000000000500003000000000000000000
.................................................................AATAATA----CGTTTCGAACTAATGA....................................................................................................................................23220.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000110201110000000000000000000000000000000010000000000000230000001600000200000100001000000300001000000000000000100
...................................................................TAATA----CGTTTCGAACTAATGAA...................................................................................................................................22219.5039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000010100000010000000000006001010212000000000000000002000000000000001000000000000013010000100001100000000100000000100001000000010100000000
..................................................................ATAATA----CGTTTCGAACTAATGAC...................................................................................................................................23219.5039000000000000000000000000000000000000000000100000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000004000010001000085000000000000000100000000000000000000020002000000400002000000001000000001300000000000000000000000
...........................................................................................................................TTAGGTAGTTACGCATTATCTA...............................................................................22216.0032000000000003100000000002000000000000000000000000100000000000000000000000000000000000000000100500300010000000006000100000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000102000000000000010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droBia1
T-----------------------------------------------------TCCAATCATTAGAAAGTT----CGTTACGTACTATT--------------TGCTCGGTTTAAAAAC-AAATAGTACGTGTCGGATTTTCAAATTATTGCTTACAATCAACATGCTCGAGAGCATTGAGATCTTTAAAACAAAGTGTTGTGCCTAAGTACCAGTGATTTTASizeHit CountTotal NormTotal
No Reads
droTak1
T-----------------------------------------------------TCCAATCATTTAATAGTC----CGATTCGTTCTTAG--------------TGCTTATTTTGAAAATGCAGTAGTGCGTTTCGGATTATTCAATTATTGTTAACAAACATCGAG-----A--------GATCTTGTA-------------------CTTAAAACGATATAASizeHit CountTotal NormTotal
No Reads
droFic1
A-TATACCTATAACAAATATTA-------------TTTACCCATC---A-TTGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTA----------------GTTTGGGAGCTTTGG---TTATAACATCAATGTAA-CAATTGA----CTACAA--------ATTAACAAA-------------------TCAAT--TTATATGTSizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:27 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4690:1633090-1633252 - der_27 confident AGTGTA----TAGCTTAAA---TCCACCGGAATTGTGTG---ATA---TTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCAT----------------TCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCG--------TGTGAGAAA-------------------TTGCTCATGATATGC
droSec2 scaffold_4:2462183-2462350 + dse_1860 G-TGAA----TGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCAT----------------TCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTAC
droSim2 x:3957161-3957328 - dsi-mir-983 Known_mirbase G-TGAA----TGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCAT----------------TCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTAC
dm3 chrX:4262305-4262440 - dme-mir-983-1 Known_mirbase T-----------------------------------------ATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCAT----------------TCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCG--------TATGAGAAA-------------------TTACTTATGATGTAC
droBia1 scf7180000301703:495529-495680 + T-----------------------------------------------------TCCAATCATTAGAAAGTT----CGTTACGTACTATT--------------TGCTCGGTTTAAAAAC-AAATAGTACGTGTCGGATTTTCAAATTATTGCTTACAATCAACATGCTCGAGAGCATTGAGATCTTTAAAACAAAGTGTTGTGCCTAAGTACCAGTGATTTTA
droTak1 scf7180000415394:1160794-1160914 + T-----------------------------------------------------TCCAATCATTTAATAGTC----CGATTCGTTCTTAG--------------TGCTTATTTTGAAAATGCAGTAGTGCGTTTCGGATTATTCAATTATTGTTAACAAACATCGAG-----A--------GATCTTGTA-------------------CTTAAAACGATATAA
droFic1 scf7180000453901:210004-210155 + A-TATACCTATAACAAATATTA-------------TTTACCCATC---A-TTGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTA----------------GTTTGGGAGCTTTGG---TTATAACATCAATGTAA-CAATTGA----CTACAA--------ATTAACAAA-------------------TCAAT--TTATATGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AGTGTA----TAGCTTAAA---TCCACCGGAATTGTGTG---ATA---TTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCAT----------------TCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCG--------TGTGAGAAA-------------------TTGCTCATGATATGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................................................AATGCGAAACGGATTATTAAG..............................................................................2113196.00319622013228523070
.............................................................................................................................AATGCGAAACGGATTATTAAGT.............................................................................2212871.00287128481325472710
.............................................................................................................................AATGCGAAACGGATTATTAAGTT............................................................................231139.001390000128110
.............................................................................................................................AATGCGAAACGGATTATTAA...............................................................................202127.502553020223270
.............................................................................................................................AATGCGAAACGGATTATTAAGTA............................................................................23160.006000105360
...........................................................................................................................TAAATGCGAAACGGATTATTAA...............................................................................22148.004800004080
.............................................................................................................................AATGCGAAACGGATTATTAAGA.............................................................................22144.0044000034100
............................................................................................................................AAATGCGAAACGGATTATTAAG..............................................................................22141.004110013450
...........................................................................................................................TAAATGCGAAACGGATTATTAAG..............................................................................23137.003700103150
...............................................................TTAATAATT----CGATTCGAAGTTA.......................................................................................................................................22132.003231002620
..............................................................................................................................ATGCGAAACGGATTATTAAGT.............................................................................21121.002120001900
...........................................................................................................................TAAATGCGAAACGGATTATTAAA..............................................................................23213.002600002060
..............................................................................................................................ATGCGAAACGGATTATTAAG..............................................................................20112.00122000820
.............................................................................................................................AATGCGAAACGGATTATTAAGTTA...........................................................................2417.0070000610
.............................................................................................................................AATGCGAAACGGATTATTAAGTTT...........................................................................2415.0050010220
...........................................................................................................................TAAATGCGAAACGGATTATTA................................................................................2114.0040000400
.............................................................................................................................AATGCGAAACGGATTATTA................................................................................1924.0081000610
.............................................................................................................................AATGCGAAACGGATTATT.................................................................................1823.5071000060
.............................................................................................................................AATGCGAAACGGATTATTAAGC.............................................................................2223.0060000510
.............................................................................................................................AATGCGAAACGGATTATTAAGTC............................................................................2313.0030000210
...........................................................................................................................TAAATGCGAAACGGATTATT.................................................................................2013.0031000110
............................................................................................................................AAATGCGAAACGGATTATTAA...............................................................................2122.5050000410
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAA..........................................................................2512.0020000200
................................................................................................................................GCGAAACGGATTATTAAG..............................................................................1812.0020000200
............................................................................................................................AAATGCGAAACGGATTATTAAGT.............................................................................2312.0020000110
...........................................................................................................................TAAATGCGAAACGGATTATTAAGT.............................................................................2412.0020000200
.............................................................................................................................AATGCGAAACGGATTATTAAGTG............................................................................2312.0020000110
...............................................................................................................................TGCGAAACGGATTATTAAG..............................................................................1912.0020000200
...............................................................................................................................TGCGAAACGGATTATTAAGT.............................................................................2012.0020000200
.............................................................................................................................AATGCGAAACGGATTATTAAT..............................................................................2121.5030000120
...........................................................................................................................TAAATGCGAAACGGATTATTAAAA.............................................................................2421.5030000210
.............................................................................................................................AATGCGAAACGGATTATTAAGAA............................................................................2311.0010000010
.............................................................................................................................AATGCGAAACGGATTATTT................................................................................1921.0020000020
...........................................................................................................................TAAATGCGAAACGGATTATTAAT..............................................................................2311.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAAA.........................................................................2611.0010000100
...............................................................TTAATAATT----CGATTCGAAGTTAT......................................................................................................................................2311.0010000100
...............................................................TTAATAATT----CGATTCGAAGTTAA......................................................................................................................................2311.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTAC...........................................................................2411.0010000100
...........................................................................................................................TAAATGCGAAACGGATTATTAAAAA............................................................................2521.0020000200
...............................................................TTAATAATT----CGATTCGAAGTTATGTGCTT................................................................................................................................2911.0011000000
.................................................................AATAATT----CGATTCGAAGTT........................................................................................................................................1911.0011000000
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAT..........................................................................2511.0010000100
...........................................................................................................................TAAATGCGAAACGGATTATTAAGA.............................................................................2411.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAAGTAT...........................................................................2411.0010000100
.............................................................................................................................AATGCGAAACGGATTATTAT...............................................................................2020.5010000010
.............................................................................................................................AATGCGAAACGGATTATTAGT..............................................................................2120.5010000100
.............................................................................................................................AATGCGAAACGGATTATTAAC..............................................................................2120.5010000010
............................................................................................................................AAATGCGAAACGGATTATT.................................................................................1920.5010000100
............................................................................................................................AAATGCGAAACGGATTATTA................................................................................2020.5010010000
droSec2
G-TGAA----TGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCAT----------------TCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTACSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................TGAGTTCGTTAGGTATTATCT................................................................................211361.00361832252330
...........................................................................................................................TGAGTTCGTTAGGTATTATCTA...............................................................................221224.00224631341017
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAA..............................................................................23175.007555785
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAT..............................................................................23171.007166410
..........................................................................................................................ATGAGTTCGTTAGGTATTATCT................................................................................22165.0065105122
...........................................................................................................................TGAGTTCGTTAGGTATTATC.................................................................................20132.003212614
.................................................................AGTAATA----CCTTTCGAACATATG.....................................................................................................................................22132.003225610
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAAA.............................................................................24126.002651830
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAG..............................................................................23123.002302201
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGT.............................................................................24119.00199505
.................................................................AGTAATA----CCTTTCGAACATATGA....................................................................................................................................23118.001818000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAAAA............................................................................25114.001411210
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAC..............................................................................23114.001411210
..........................................................................................................................ATGAGTTCGTTAGGTATTATC.................................................................................21112.00121812
.................................................................AGTAATA----CCTTTCGAACATAT......................................................................................................................................2116.0061401
...........................................................................................................................TGAGTTCGTTAGGTATTATCTATA.............................................................................2415.0050500
............................................................................................................................GAGTTCGTTAGGTATTATCT................................................................................2015.0055000
...............................................................TTAGTAATA----CCTTTCGAACATA.......................................................................................................................................2215.0054100
..........................................................................................................................ATGAGTTCGTTAGGTATTAT..................................................................................2014.0040400
.............................................................................................................................AGTTCGTTAGGTATTATCTAG..............................................................................2113.0030300
............................................................................................................................GAGTTCGTTAGGTATTATCTAT..............................................................................2213.0032100
...........................................................................................................................TGAGTTCGTTAGGTATTAT..................................................................................1913.0030210
.............................................................................................................................AGTTCGTTAGGTATTATCTAGT.............................................................................2213.0031200
................................................................TAGTAATA----CCTTTCGAACATAT......................................................................................................................................2213.0033000
..........................................................................................................................ATGAGTTCGTTAGGTATTATCTAA..............................................................................2412.0020200
............................................................................................................................GAGTTCGTTAGGTATTATCTAG..............................................................................2212.0021100
..................................................................GTAATA----CCTTTCGAACATATG.....................................................................................................................................2112.0022000
.................................................................AGTAATA----CCTTTCGAACATATGT....................................................................................................................................2312.0020200
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGA.............................................................................2411.0010100
..................................................................GTAATA----CCTTTCGAACATAT......................................................................................................................................2011.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTATC.............................................................................2411.0010100
..........................................................................................................................ATGAGTTCGTTAGGTATTATCTT...............................................................................2311.0010100
...........................................................................................................................TGAGTTCGTTAGGTATTAA..................................................................................1911.0010100
...............................................................TTAGTAATA----CCTTTCGAACAT........................................................................................................................................2111.0010001
.................................................................AGTAATA----CCTTTCGAACATA.......................................................................................................................................2011.0011000
...............................................................TTAGTAATA----CCTTTCGAACA.........................................................................................................................................2011.0011000
..........................................................................................................................ATGAGTTCGTTAGGTATTA...................................................................................1911.0010001
...........................................................................................................................TGAGTTCGTTAGGTATTATCTGT..............................................................................2311.0010100
.............................................................................................................................AGTTCGTTAGGTATTATCTAGG.............................................................................2211.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGTT............................................................................2511.0010100
............................................................................................................................GAGTTCGTTAGGTATTATCTA...............................................................................2111.0011000
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGTA............................................................................2511.0010100
droSim2
G-TGAA----TGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCAT----------------TCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCG--------GATGAGGAA-------------------TTACTTGTGATGTACSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................TGAGTTCGTCAGGTATTATCT................................................................................2116722.0067222734057122783325179602295887000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCT................................................................................2216446.006446100122939413973222143830184161028
..........................................................................................................................ATGAGTTCGTCAGGTATTATC.................................................................................2112808.002808253536301081543062112181001
.................................................................AGTAATA----CCTTTCGAACACATG.....................................................................................................................................2212195.00219524339106916174193101683981469000
.................................................................AGTAATA----CCTTTCGAACACATGA....................................................................................................................................2311858.001858228267694171239243252754765000
..........................................................................................................................ATGAGTTCGTCAGGTATTAT..................................................................................2011737.001737040021103101011704001
...........................................................................................................................TGAGTTCGTCAGGTATTATCTA...............................................................................2211568.00156851326801745393425738171032001
.................................................................AGTAATA----CCTTTCGAACACA.......................................................................................................................................201947.009472120287227325320017000
.................................................................AGTAATA----CCTTTCGAACACAT......................................................................................................................................211893.00893927616601613884301137000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAT..............................................................................231399.0039919200003111912360000
..........................................................................................................................ATGAGTTCGTCAGGTATTA...................................................................................191358.00358030013000000100224000
...........................................................................................................................TGAGTTCGTCAGGTATTATC.................................................................................201269.00269431506311300710153000
.................................................................AGTAATA----CCTTTCGAACAC........................................................................................................................................191238.002380100228102000006000
.................................................................AGTAATA----CCTTTCGAACA.........................................................................................................................................181194.001940000185601001001000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAA..............................................................................231191.00191016150004151500144000
...........................................................................................................................TGAGTTCGTCAGGTATTAT..................................................................................191165.0016500002300010200139000
.................................................................AGTAATA----CCTTTCGAACACATGAAA..................................................................................................................................251136.001360106000341229841032000
...........................................................................................................................TGAGTTCGTCAGGTATTA...................................................................................181120.001200000117100000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTT...............................................................................221105.001050200000000000103000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCC................................................................................22184.00847552000000000002000
.................................................................AGTAATA----CCTTTCGAACACATGAT...................................................................................................................................24178.00782600383102100025000
.................................................................AGTAATA----CCTTTCGAACACATGT....................................................................................................................................23175.00750101000001020061000
.................................................................AGTAATA----CCTTTCGAACACATGAA...................................................................................................................................24172.0072032000542210053000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTT...............................................................................23172.00720120000000000060000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCA................................................................................22156.0056050000010010049000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTA...............................................................................23152.0052091010135130226000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAAA.............................................................................24145.00450410000214340116000
..........................................................................................................................ATGAGTTCGTCAGGTATTAA..................................................................................20138.0038020000000000036000
..........................................................................................................................ATGAGTTCGTCAGGTATTT...................................................................................19137.0037000000000000037000
..........................................................................................................................ATGAGTTCGTCAGGTATT....................................................................................18133.0033031024000003002000
.................................................................AGTAATA----CCTTTCGAACACATGAAAA.................................................................................................................................26128.0028011000122000021000
..........................................................................................................................ATGAGTTCGTCAGGTATTATT.................................................................................21127.0027101000000000025000
...........................................................................................................................TGAGTTCGTCAGGTATTATCA................................................................................21126.0026000000000000026000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCG................................................................................22124.0024216600000000000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATA.................................................................................21123.0023000000000000023000
.................................................................AGTAATA----CCTTTCGAACACATGC....................................................................................................................................23123.0023000000000000023000
..........................................................................................................................ATGAGTTCGTCAGGTATTATAA................................................................................22122.0022000000000000022000
...........................................................................................................................TGAGTTCGTCAGGTATTATCC................................................................................21119.0019311500000000000000
.................................................................AGTAATA----CCTTTCGAACACATGG....................................................................................................................................23116.0016012400000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATA.................................................................................20113.0013000000000000013000
.................................................................AGTAATA----CCTTTCGAACACATA.....................................................................................................................................22112.0012000000000000012000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAAAA............................................................................25110.001000010011312001000
...........................................................................................................................TGAGTTCGTCAGGTATTATT.................................................................................20210.0020000000000000020000
...........................................................................................................................TGAGTTCGTCAGGTATTATAA................................................................................21110.0010000000000000010000
...........................................................................................................................TGAGTTCGTCAGGTA......................................................................................15110.0010000000000010000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCG................................................................................2119.00903200010000003000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTTT..............................................................................2319.00903000000000006000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTTT..............................................................................2419.00904000000000005000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTATAA............................................................................2519.00900000000100008000
............................................................................................................................GAGTTCGTCAGGTATTATCT................................................................................2019.00900005000000004000
..................................................................GTAATA----CCTTTCGAACACATGA....................................................................................................................................2218.00800016010000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAC..............................................................................2318.00803100000002002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAG..............................................................................2317.00701001000000005000
..............................................................................................................................GTTCGTCAGGTATTATCT................................................................................1816.00600000000006000000
.....................................................................ATA----CCTTTCGAACACATG.....................................................................................................................................1816.00600000010005000000
..................................................................GTAATA----CCTTTCGAACACATG.....................................................................................................................................2116.00600002003000001000
...........................................................................................................................TGAGTTCGTCAGGTATTAA..................................................................................1915.00500000000000005000
..........................................................................................................................ATGAGTTCGTCAGGT.......................................................................................1515.00500000000004001000
..........................................................................................................................ATGAGTTCGTCAGGTA......................................................................................1615.00500000000005000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTATA.............................................................................2414.00400000000000004000
.........................................................................................................................CATGAGTTCGTCAGGTATTATC.................................................................................2214.00400000000000004000
.................................................................AGTAATA----CCTTTCGAACACAA......................................................................................................................................2114.00400000000001003000
.................................................................AGTAATA----CCTTTCGAACACATGTAA..................................................................................................................................2513.00300000000000003000
.........................................................................................................................CATGAGTTCGTCAGGTATTATCT................................................................................2313.00300000000000003000
....................................................................AATA----CCTTTCGAACACATGA....................................................................................................................................2013.00300000000002001000
.................................................................AGTAATA----CCTTTCGAACACATGCA...................................................................................................................................2413.00300000000000003000
..................................................................GTAATA----CCTTTCGAACACATGAT...................................................................................................................................2313.00301002000000000000
...................................................................TAATA----CCTTTCGAACACATGA....................................................................................................................................2113.00300001000000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTG...............................................................................2213.00301200000000000000
.................................................................AGTAATA----CCTTTCGAACACATGACA..................................................................................................................................2513.00300000000000003000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAA..............................................................................2413.00302000000000001000
...........................................................................................................................TGAGTTCGTCAGGTATTTA..................................................................................1922.50500000000000005000
.............................................................................................................................AGTTCGTCAGGTATTATCT................................................................................1912.00200101000000000000
.................................................................AGTAATA----CCTTTCGAACACATGAAC..................................................................................................................................2512.00200200000000000000
.................................................................AGTAATA----CCTTTCGAA...........................................................................................................................................1612.00200000000001001000
............................................................................................................................GAGTTCGTCAGGTATTATC.................................................................................1912.00200001000001000000
.................................................................AGTAATA----CCTTTCGAACACATGTA...................................................................................................................................2412.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCAT...............................................................................2312.00200000000000002000
...........................................................................................................................TGAGTTCGTCAGGTATTATTA................................................................................2122.00400000000000004000
............................................................................CCTTTCGAACACATGA....................................................................................................................................1612.00200000000002000000
..................................................................GTAATA----CCTTTCGAACACAT......................................................................................................................................2012.00200001000000001000
...........................................................................................................................TGAGTTCGTCAGGTATT....................................................................................1712.00200000000002000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTC...............................................................................2312.00200100000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTTA..................................................................................2012.00200000000000002000
.................................................................AGTAATA----CCTTTCGAACACATT.....................................................................................................................................2212.00202000000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTAAA.................................................................................2012.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTG...............................................................................2312.00200000000001001000
..........................................................................................................................ATGAGTTCGTCAGGTATAT...................................................................................1912.00200000000000002000
............................................................................................................................GAGTTCGTCAGGTATTATCTA...............................................................................2112.00200001000000001000
....................................................................AATA----CCTTTCGAACACATG.....................................................................................................................................1912.00200000000002000000
.................................................................AGTAATA----CCTTTCGAACACATGATT..................................................................................................................................2512.00200000000000002000
.....................................................................ATA----CCTTTCGAACACATGA....................................................................................................................................1912.00200011000000000000
.................................................................AGTAATA----CCTTTCGAACACATGAG...................................................................................................................................2412.00200000000001001000
.................................................................AGTAATA----CCTTTCGAACACATGTAG..................................................................................................................................2512.00200000000000002000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAAA.............................................................................2512.00200100010000000000
.................................................................AGTAATA----CCTTTCGAACACATGATA..................................................................................................................................2512.00200000001000001000
.................................................................AGTAATA----CCTTTCGAACACATGAC...................................................................................................................................2412.00202000000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTTA..............................................................................2321.50301000000001001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATTC................................................................................2211.00100100000000000000
...........................................................................................................................TGAGTTCGTCAGGTATTATCAT...............................................................................2211.00100000000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTTA..............................................................................2411.00100000000000001000
............................................................................................TTTTCAG-TCAT----------------TCATGAGTTCGTCAGG........................................................................................2711.00100000000100000000
..........................................................................................................................ATGAGTTCGTCAGGTATTG...................................................................................1911.00100000000000001000
................................................................................................................................TCGTCAGGTATTATCT................................................................................1611.00100000000001000000
...................................................................TAATA----CCTTTCGAACACATGAT...................................................................................................................................2211.00100000000000001000
............................................................................................................................GAGTTCGTCAGGTATTATCTT...............................................................................2111.00100000000000001000
.................................................................AGTAATA----CCTTTCGAACACATGGA...................................................................................................................................2411.00100000000000001000
................................................................................................................................TCGTCAGGTATTATCTA...............................................................................1711.00100000000001000000
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAT..............................................................................2411.00100000000000001000
..........................................................................................................................ATGAGTTCGTCAGGTATTATG.................................................................................2111.00100000000000001000
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAGT.............................................................................2411.00100000010000000000
..................................................................GTAATA----CCTTTCGAACACATGAAAA.................................................................................................................................2511.00100000000000001000
..............................................................................................................................GTTCGTCAGGTATTATCTAT..............................................................................2011.00100000000001000000
.................................................................AGTAATA----CCTTTCGAACACAAA.....................................................................................................................................2211.00100000000000001000
.......................................................................A----CCTTTCGAACACATGA....................................................................................................................................1711.00100000000001000000
dm3
T-----------------------------------------ATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCAT----------------TCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCG--------TATGAGAAA-------------------TTACTTATGATGTACSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................ATAATA----CGTTTCGAACTAATGA....................................................................................................................................22243492.5086985000000000011710000000119881330030000000056349616731828121923311675030000111000000000000000004235383501358014417101290044001113831719911006700080000000000000111564210109005342213910215632370401311443893130240500014130900084113051100010012311430520002510154000000222100000010001946197394319388489148382444349314744416135514300720912239215301616147144726571153636783179711693537151020160111669471113481183092074411273224908104407995161242557224969810333925835136288229617564796818336435914187345411656878530395444433203271219693394
..................................................................ATAATA----CGTTTCGAACTAATG.....................................................................................................................................21217263.50345270000000000050000000034231480000100000026933310393432646451115000000000000000000000002319183004401013126019101402018106304781412400013000010301000200068000000275063133883631623334221030020010401100167111130840000012849299100021601140000002140002004041015626774393209667667688288110011000030030141315214847100109414022118138365134752605231213105841117115206135144331671251159162322121974829213911215428042701731220219516783931015144332782517027711563461738104450130
..........................................................................................................................ATTAGGTAGTTACGCATTATCT................................................................................22215955.5031911000001000001500000100223935132005000000003612663219548619111749381200000000000000000000000973601084110013019810460122620411234149011170100000000002000000000001412045295251115122950400000107000330300039080607100520688616882310060046122000007410300000014792147360711791351105176342120090000117040441125012033101000791222306832472324613201269542712144129081227164538662152134091225311642592443710976204186015572384391577520231357100231813157121010299040
..................................................................ATAATA----CGTTTCGAACTAAT......................................................................................................................................20211806.0023612000000000004000000003111600200000000000001400100000200000000000000000000000001589110000002100100601600002100000200000600000000000020001613000000003300211270033000001403000210400211030305000000666530000060019000000110000000010111613393383615429680035000000001896190017322012425102413162913360863002512413627040911656453115109101265034162114171536171932061142461740173227015008037340513122062227120
..........................................................................................................................ATTAGGTAGTTACGCATTATC.................................................................................2123949.007898000001000000000000001200664000000000000200001111001015510000000000000000000000032010000100000100110060004000300000100070000000000000000450000000003420000133100000002000000000001300000000002018203661000600325000000060000000005343817134805031302000010000010019009170041260510159108011200131037185230516750133178110011807632200182912324911436132204710310193133411949116011365221286295430
..........................................................................................................................ATTAGGTAGTTACGCATTAT..................................................................................2021670.00334000000000000000000000100386001000000000000000100000100000000000000000000000000010010000200000000200400000000000001000300000000000000000000000000000100003000000000002200000000010100000000300103133800008402830000000000000005106108701000000100200000000000004005400000303005000402021085121519967192001654010143121631006012822931044822462210128442010312000003162800
..................................................................ATAATA----CGTTTCGAACTAATGAA...................................................................................................................................2321168.502337000000000002000000003001000000000000000002010000001632000000000000000000000001101030000000010060030020000000000500010100000000000000100000000350305010000430000000000042050002406000300000004508300003106000000024000100000119321027234329264612740058033000000010207500391001001010013000011000196006402731037000118800001642810700131758141828001224617700003821040704701220021200
..................................................................ATAATA----CGTTTCGAACTAATGATC..................................................................................................................................242904.50180900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285524000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAA.......................................................................................................................................192691.0013820000000000000000000000040000000000000100001000000000000000000000000000000000110100000000100000000000000000000000000000000000000000033000000000000000011000000000000000102000200000000000011301000020050000000000000010000210003201007005000000000110111036002007041083003011000240231212110091922011000000100202002013690000109000001322200117200
...................................................................TAATA----CGTTTCGAACTAATGA....................................................................................................................................212528.001056000000000000000000006003000000000000101000200000103000000000000000000000000000000000000000000300000000000030001000000000000000000000000000000000010001030010000400000000000000000000000000626000060200000002000000000003814041257322200400000000000000001000100401301700200000032057292800004030001922100220340140205622901001101001010411100031100
...........................................................................................................................TTAGGTAGTTACGCATTATCT................................................................................212424.0084800001000000610000000701155000000000000000000010001000100000000000000000000000052120000401101010450117000203016522022200800000000000000000000000000000000000000000000000000000000110002000000005400250000440200000001100000000024122301010001000000000000000002003000000100001900300010023023100300001270000200300030202010024032000032000000010000001200
..................................................................ATAATA----CGTTTCGAACTAATGT....................................................................................................................................222369.507390000000000000000000000030000000000001000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000101201000000000000000000101000000000001502100001101300000012000000000111710100001000000000000001000310220000010000151000000000610132070011268000063720002037291500077320000187100000020000200310
..................................................................ATAATA----CGTTTCGAACTAATGAAA..................................................................................................................................242312.506250000000000000000000010100000000000001001000000010001000000000000000000000000000000000000000002001000002000000030002000020002000000000000000221000010000040000000000001002002143300050000005180430000603700000007000000000102903101237171335810001331200000000000120050000000000000000000002700230010000100005605200030100130012106000010000000120200000000
...................................................................TAATA----CGTTTCGAACTAATGAT...................................................................................................................................222167.0033400000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000010000000000000000000180000000000000000000000000010010000000000000000000000000000000000000000060300000000000000000000000000141001010031000100000000001010020000001001090000000000410181300001530000010000100010000000167000127000100010000000200
..........................................................................................................................ATTAGGTAGTTACGCATTATCTA...............................................................................232130.0026000000020001700000000500290000000000010000000000000010000000000000000000000000000003000100001002610700440100100201800190000000000000000100000000010000000010000000000000000000001000001000000040200008090000000300000000000450010110000000000000000000010000000000000000000100001300127250000100008000000003000000002100000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAATA.....................................................................................................................................212123.0024600000000000200000000000110000000000000000000000000000000000000000000000000000000000000000000002001000000000000010002000000000000000000000000000000000000000000000000000000000102000000000003101900001901200000000000000000011020030001000000000000000001100110000001010020000000000103150000002800000240001000705170000017000040000010110000000200
...................................................................TAATA----CGTTTCGAACTAATG.....................................................................................................................................202109.50219000000000000001000000003000000000000002000000000000000000000000000000000000000000000000010000200000100000000000000000000000000000001000000010000000000000000200000000000000010000000000000002000020100000000000000000007103000012000000000000000000002100000100005010000000010004110000930000000000000000100000148000023000000000000010100
...........................................................................................................................TTAGGTAGTTACGCATTATC.................................................................................202103.5020700000000000000000000000280000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001401400008011000000000000000000019200000000000000000000000000000100000100008000000000000000030000250000100000010010200021130000027010001000000001100
..................................................................ATAATA----CGTTTCGAACTAATGAAAA.................................................................................................................................25298.501970000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000030000000000000000000000101000400000000000001511400003018000000310000000000131011104752200003000000000000110090000000000000000000004400310010000000008030000000006300013100000000001040000000100
..................................................................ATAATA----CGTTTCGAACTAATGC....................................................................................................................................22296.501930000000000000000000000000000000000000000003000000030000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000101000000000000000000100000000000000000000000000000000000000000031000000001000000000000000030011001002000010000000000500747113000147000033010031316011010201900002000000000000000000
..................................................................ATAATA----CGTTTCGAACTAAG......................................................................................................................................20295.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000100000000000000000000018300000000000000000000000300001000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTA...................................................................................19289.0017800000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003015000070230000000000000000000610010000000000000000000000000110000000000100301000001001511000046000030000000004321000114000018000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATT.....................................................................................................................................21281.501630000000000000000000000000010000000000000010000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000010000000000000000000010001020020007001201202000000000000002010000101000010000000000001000001000008000000000000001100
..................................................................ATAATA----CGTTTCGAACTA........................................................................................................................................18278.501570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000022330000000000000000000000000000000000010000000000000000000100000000000000000000000000151000100000000000000000000000000000000010040010000000401030100005700002000000100201001010100000000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATGG....................................................................................................................................22254.00108000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000002100000000200100000000000000002000000000001001000000040001707000031000021110001000001000031700008000000000000000100
..................................................................ATAATA----CGTTTCGAACTAATGAT...................................................................................................................................23249.0098000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000102000010100000002000000000002002120002000011700000000000000000000000000100000000002014121400002200000000000001000000031400002000000010000000000
..................................................................ATAATA----CGTTTCGAACTAATC.....................................................................................................................................21248.009600000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000020100200000000001020610000045000000000000101001000002600002000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATCTATC.............................................................................25246.009200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAAA......................................................................................................................................20239.007800000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000040100000010000000000000000000300000000010000000000000000100100000000000100100000000000300000026000000000000000000000002500005000000000000001100
..................................................................ATAATA----CGTTTCGAACTAATGAG...................................................................................................................................23235.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000070100000000000000000000000000000000000000000102000000300000000000000000001010000002000000000000000000000000000000001000000000020009000000100004101000301103700014400004000003000000000000
...................................................................TAATA----CGTTTCGAACTAAT......................................................................................................................................19232.50650000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000001000000000000000000000001000010030000000000000011000004300000000000000001000001300005000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATCC................................................................................22232.006400000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000011020000201000000000000000000070000000001000000000000000000000000000000010010000000100060100001700000000001001100000000200004000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATTATA.................................................................................21230.006000000000000300000000000140000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000002020000007000000000000000000010000000000000000000000000000000000000000000000000000100130000001700000000000000100100101100000000000000000000000
..........................................................................................................................ATTAGGTAGTTACGCATT....................................................................................18228.505700000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000001030000000020000000000000000000151000000000000000000000000000001000000000010000000000000000000002000004010000000101000000000000000000000000000000
..................................................................ATAATA----CGTTTCGAACTAATGAAC..................................................................................................................................24228.50570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000459000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000
.................................................................AATAATA----CGTTTCGAACTAATG.....................................................................................................................................22225.50510000000000000000000010000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000200010000000000000000000000000000000040000000001500060000001500002000000000000100000400003000000010000000100
..........................................................................................................................ATTAGGTAGTTACGCATTATCA................................................................................22223.00460000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000206000000700000000000000000004000000000000010000000000000000000000000001000000000000001000000400000020000000000000000100000000000000000000000
...........................................................................................................................TTAGGTAGTTACGCATTAT..................................................................................19223.00460000000000000000000000040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004060000007000000000000000000010000000000000000000000000000001000001000030100000000000000000001000000000000000000100000400001000000010000000000
.................................................................AATAATA----CGTTTCGAACTAAT......................................................................................................................................21221.50430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000102000000000000000000000000000001000010000000000000020000002400000200000000000000000500003000000000000000000
.................................................................AATAATA----CGTTTCGAACTAATGA....................................................................................................................................23220.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000110201110000000000000000000000000000000010000000000000230000001600000200000100001000000300001000000000000000100
...................................................................TAATA----CGTTTCGAACTAATGAA...................................................................................................................................22219.5039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000010100000010000000000006001010212000000000000000002000000000000001000000000000013010000100001100000000100000000100001000000010100000000
..................................................................ATAATA----CGTTTCGAACTAATGAC...................................................................................................................................23219.5039000000000000000000000000000000000000000000100000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000004000010001000085000000000000000100000000000000000000020002000000400002000000001000000001300000000000000000000000
...........................................................................................................................TTAGGTAGTTACGCATTATCTA...............................................................................22216.0032000000000003100000000002000000000000000000000000100000000000000000000000000000000000000000100500300010000000006000100000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000102000000000000010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droBia1
T-----------------------------------------------------TCCAATCATTAGAAAGTT----CGTTACGTACTATT--------------TGCTCGGTTTAAAAAC-AAATAGTACGTGTCGGATTTTCAAATTATTGCTTACAATCAACATGCTCGAGAGCATTGAGATCTTTAAAACAAAGTGTTGTGCCTAAGTACCAGTGATTTTASizeHit CountTotal NormTotal
No Reads
droTak1
T-----------------------------------------------------TCCAATCATTTAATAGTC----CGATTCGTTCTTAG--------------TGCTTATTTTGAAAATGCAGTAGTGCGTTTCGGATTATTCAATTATTGTTAACAAACATCGAG-----A--------GATCTTGTA-------------------CTTAAAACGATATAASizeHit CountTotal NormTotal
No Reads
droFic1
A-TATACCTATAACAAATATTA-------------TTTACCCATC---A-TTGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTA----------------GTTTGGGAGCTTTGG---TTATAACATCAATGTAA-CAATTGA----CTACAA--------ATTAACAAA-------------------TCAAT--TTATATGTSizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:27 PM