ID:

der_26

 Coordinate:

scaffold_4845:13905078-13905137 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.9 -27.7 -27.6

Flybase annnotation

utr3 [utr3_minus_3253]

No Repeatable elements found

Sense Strand Reads

AAGTGGCAGCTCCCAGTGGATTACGGTGGCGACTCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACATCCAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAGGGGCCACCGGCAGCGATAAAACG

***********************************.((((((....(((.((((((((.((((.(((.(((((.((.....))..))))).))))))).)))))))).)))....))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V108

head

 V107

male body		 M055

female body

 V060

head

 M057

embryo

 V040

embryo

 GSM1528801

follicle cells
.......................................................................................TATTGCTTGAGAATACACGTAG................................................... 22 0 1 7446.00 7446 4127 1057 966 598 446 252 0
.......................................................................................TATTGCTTGAGAATACACGTA.................................................... 21 0 1 1221.00 1221 922 148 31 113 5 2 0
.......................................................................................TATTGCTTGAGAATACACGT..................................................... 20 0 1 301.00 301 205 48 12 34 1 1 0
..................................................ACGTGTATGCTCGTAGCTATAAC....................................................................................... 23 0 1 128.00 128 70 4 4 7 25 18 0
.......................................................................................TATTGCTTGAGAATACACGTAGT.................................................. 23 0 1 102.00 102 56 22 9 8 1 6 0
........................................................................................ATTGCTTGAGAATACACGTAG................................................... 21 0 1 92.00 92 27 11 46 5 2 1 0
.......................................................................................TATTGCTTGAGAATACACGTAGA.................................................. 23 1 1 81.00 81 42 14 7 12 6 0 0
.......................................................................................TATTGCTTGAGAATACACGTAT................................................... 22 1 1 60.00 60 41 3 0 6 0 10 0
.......................................................................................TATTGCTTGAGAATACACTTAG................................................... 22 1 1 41.00 41 28 1 7 3 1 1 0
.......................................................................................TATTGCTTGATAATACACGTAG................................................... 22 1 1 40.00 40 36 1 0 1 0 2 0
.......................................................................................TATTGCTTTAGAATACACGTAG................................................... 22 1 1 37.00 37 34 0 0 1 0 2 0
.......................................................................................TATTGCTTGAGAATACACGTAA................................................... 22 1 1 31.00 31 18 4 4 5 0 0 0
.......................................................................................TGTTGCTTGAGAATACACGTAG................................................... 22 1 1 30.00 30 1 5 1 0 23 0 0
.......................................................................................TATTTCTTGAGAATACACGTAG................................................... 22 1 1 28.00 28 21 1 3 0 0 3 0
.......................................................................................TACTGCTTGAGAATACACGTAG................................................... 22 1 1 22.00 22 8 4 0 1 9 0 0
..................................................ACGTGTATGCTCGTAGCTATA......................................................................................... 21 0 1 20.00 20 13 1 0 0 0 6 0
.......................................................................................TATTGCTTGAGAATACAAGTAG................................................... 22 1 1 20.00 20 14 0 5 1 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTAC................................................... 22 1 1 18.00 18 8 1 0 2 7 0 0
.......................................................................................TATTGCTTGAGAATACACGTAGC.................................................. 23 1 1 17.00 17 9 1 1 2 2 2 0
......................................................................................CTATTGCTTGAGAATACACGTAG................................................... 23 1 1 17.00 17 2 0 2 0 13 0 0
.........................................................................................TTGCTTGAGAATACACGTAG................................................... 20 0 1 17.00 17 11 0 5 0 1 0 0
.......................................................................................TATTGATTGAGAATACACGTAG................................................... 22 1 1 15.00 15 12 2 0 1 0 0 0
.......................................................................................TATTGCTTGAGGATACACGTAG................................................... 22 1 1 14.00 14 5 3 2 2 1 1 0
.......................................................................................TATCGCTTGAGAATACACGTAG................................................... 22 1 1 14.00 14 6 3 1 0 4 0 0
.......................................................................................TATTGCTTGAGAATACACGTGG................................................... 22 1 1 13.00 13 2 1 6 4 0 0 0
.......................................................................................TATTCCTTGAGAATACACGTAG................................................... 22 1 1 13.00 13 5 2 5 1 0 0 0
......................................................................................TTATTGCTTGAGAATACACGTAG................................................... 23 0 1 12.00 12 8 2 1 1 0 0 0
.......................................................................................GATTGCTTGAGAATACACGTAG................................................... 22 1 1 11.00 11 5 4 0 0 2 0 0
.......................................................................................TATTGCTTGAGAGTACACGTAG................................................... 22 1 1 11.00 11 6 1 1 1 1 1 0
.......................................................................................TATTGCTTGAGAATACACGCAG................................................... 22 1 1 10.00 10 6 1 0 1 1 1 0
.......................................................................................TATTGCTTGAGAATACCCGTAG................................................... 22 1 1 9.00 9 6 0 0 3 0 0 0
.......................................................................................TATTGCTTGAGAATAAACGTAG................................................... 22 1 1 9.00 9 8 0 0 0 1 0 0
.......................................................................................TATTGCTTGAGAATACATGTAG................................................... 22 1 1 8.00 8 7 0 0 0 0 1 0
.......................................................................................TATTGCTCGAGAATACACGTAG................................................... 22 1 1 8.00 8 4 0 1 1 1 1 0
.......................................................................................TATTGCTTGAGAATATACGTAG................................................... 22 1 1 8.00 8 3 0 4 1 0 0 0
.......................................................................................TATTGCTTGAGAATACACCTAG................................................... 22 1 1 8.00 8 6 0 0 2 0 0 0
.......................................................................................TATAGCTTGAGAATACACGTAG................................................... 22 1 1 8.00 8 1 0 2 0 5 0 0
.......................................................................................TATGGCTTGAGAATACACGTAG................................................... 22 1 1 8.00 8 2 0 0 1 5 0 0
.......................................................................................TATTGCTTGAGAATACACG...................................................... 19 0 1 8.00 8 3 2 0 2 1 0 0
.......................................................................................TAGTGCTTGAGAATACACGTAG................................................... 22 1 1 8.00 8 5 2 1 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACTTA.................................................... 21 1 1 7.00 7 6 0 0 1 0 0 0
.......................................................................................TATTGCTTGAAAATACACGTAG................................................... 22 1 1 7.00 7 5 0 0 1 0 1 0
..................................................ACGTGTATGCTCGTAGCTAT.......................................................................................... 20 0 1 7.00 7 5 1 0 1 0 0 0
.......................................................................................TATTGCTTGACAATACACGTAG................................................... 22 1 1 7.00 7 2 0 1 1 1 2 0
.......................................................................................TATTGCTTGAGAATCCACGTAG................................................... 22 1 1 7.00 7 2 0 0 0 3 2 0
..................................................ACGTGTATGCTCGTAGCTA........................................................................................... 19 0 1 7.00 7 6 0 1 0 0 0 0
.......................................................................................TATTGCTTTAGAATACACGTA.................................................... 21 1 1 7.00 7 7 0 0 0 0 0 0
.......................................................................................TATTGATTGAGAATACACGTA.................................................... 21 1 1 7.00 7 7 0 0 0 0 0 0
........................................................................................ATTGCTTGAGAATACACGTAGT.................................................. 22 0 1 6.00 6 2 0 1 0 1 2 0
.......................................................................................TATTGCCTGAGAATACACGTAG................................................... 22 1 1 6.00 6 5 0 1 0 0 0 0
.......................................................................................TATTGCTTGAGAACACACGTAG................................................... 22 1 1 6.00 6 6 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGGAG................................................... 22 1 1 6.00 6 3 0 0 1 2 0 0
.......................................................................................TATTGCTTGATAATACACGTA.................................................... 21 1 1 6.00 6 6 0 0 0 0 0 0
.......................................................................................TATTGCTTGGGAATACACGTAG................................................... 22 1 1 6.00 6 6 0 0 0 0 0 0
.......................................................................................TATTGATTGAGAATACACGT..................................................... 20 1 1 5.00 5 5 0 0 0 0 0 0
.......................................................................................CATTGCTTGAGAATACACGTAG................................................... 22 1 1 5.00 5 4 0 1 0 0 0 0
........................................................................................TATGCTTGAGAATACACGTAG................................................... 21 2 1 5.00 5 2 3 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTG.................................................... 21 1 1 5.00 5 4 0 1 0 0 0 0
.......................................................................................TATTTCTTGAGAATACACGTA.................................................... 21 1 1 5.00 5 5 0 0 0 0 0 0
.......................................................................................TATTGTTTGAGAATACACGTAG................................................... 22 1 1 5.00 5 0 0 4 1 0 0 0
.......................................................................................TATTGCTTCAGAATACACGTAG................................................... 22 1 1 5.00 5 1 1 0 0 0 3 0
.......................................................................................TAATGCTTGAGAATACACGTAG................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGGATACACGTA.................................................... 21 1 1 5.00 5 3 0 0 2 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTCG................................................... 22 1 1 5.00 5 2 1 0 2 0 0 0
..........................................................................................TGCTTGAGAATACACGTAG................................................... 19 0 1 5.00 5 2 2 1 0 0 0 0
.......................................................................................TATTGCTTGAGCATACACGTAG................................................... 22 1 1 5.00 5 2 1 0 2 0 0 0
.......................................................................................TATTGCTTGAGAATAAACGTA.................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0
......................................................................................TTATTGCTTGAGAATACACGTA.................................................... 22 0 1 4.00 4 1 1 1 1 0 0 0
.......................................................................................TATTGCTTGAGAATACACGCA.................................................... 21 1 1 4.00 4 1 0 0 3 0 0 0
...........................................................................................GCTTGAGAATACACGTAG................................................... 18 0 1 4.00 4 4 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGACTACACGTAG................................................... 22 1 1 4.00 4 0 0 0 0 4 0 0
.......................................................................................TATTACTTGAGAATACACGTAG................................................... 22 1 1 4.00 4 2 1 1 0 0 0 0
........................................................................................ATTGCTTGAGAATACACGTA.................................................... 20 0 1 4.00 4 2 0 2 0 0 0 0
.......................................................................................TATTGCTTGTGAATACACGTAG................................................... 22 1 1 4.00 4 2 0 0 1 1 0 0
.......................................................................................TATTGCTTGAGAATACACGTAGAA................................................. 24 2 1 3.00 3 2 0 0 1 0 0 0
..................................................ACGTGTATGCTCGTAGCTATAA........................................................................................ 22 0 1 3.00 3 0 1 0 1 0 1 0
.......................................................................................TATTGCTTGAGAATACACGTAGG.................................................. 23 1 1 3.00 3 1 1 0 0 0 1 0
.......................................................................................TATTGCTTGAGAATCCACGTA.................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTT.................................................... 21 1 1 3.00 3 0 2 0 0 1 0 0
......................................................................................TTATTGCTTGAGAATACACG...................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATATACGTA.................................................... 21 1 1 3.00 3 2 0 0 1 0 0 0
.......................................................................................TATTGCTTAAGAATACACGTAG................................................... 22 1 1 3.00 3 1 0 0 1 0 1 0
.......................................................................................TATTGCTCGAGAATACACGTA.................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................TATTGCTTGCGAATACACGTAG................................................... 22 1 1 3.00 3 2 0 0 1 0 0 0
..................................................ACGTGTATACTCATAGCTATAAC....................................................................................... 23 2 1 3.00 3 0 0 0 0 3 0 0
......................................................................................CTATTGCTTGAGAATACACGTA.................................................... 22 1 1 3.00 3 2 0 0 1 0 0 0
......................................................................................TTATTGCTTAAGAATACGCGT..................................................... 21 2 2 2.50 5 0 0 0 0 0 0 5
........................................................................................ATTGCTTGAGAATACACGTAGA.................................................. 22 1 1 2.00 2 0 0 2 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGGA.................................................... 21 1 1 2.00 2 1 0 1 0 0 0 0
.......................................................................................TATTGCTTTATAATACACGTAG................................................... 22 2 1 2.00 2 1 0 0 1 0 0 0
.......................................................................................CATTGCTTGAGAATACACGTA.................................................... 21 1 1 2.00 2 0 0 1 1 0 0 0
.......................................................................................TATTGCTTGAGAATACACATAG................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0
......................................................................................TTATTGCTTGAGAATACACGT..................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0
.......................................................................................TATTGCTTGAGAGTACACGTA.................................................... 21 1 1 2.00 2 1 0 0 1 0 0 0
.......................................................................................TAGTGCTTGAGAATACACGTA.................................................... 21 1 1 2.00 2 0 1 0 1 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTC.................................................... 21 1 1 2.00 2 1 0 0 1 0 0 0
......................................................................................CGATTGCTTGAGAATACACGTAG................................................... 23 2 1 2.00 2 0 0 0 0 2 0 0
......................................................................................CTAATGCTTGAGAATACACGTAG................................................... 23 2 1 2.00 2 0 0 0 0 2 0 0
.......................................................................................TATTGCTTGAGAATGCACGT..................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................AATTGCTTGAGAATACACGTAG................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0
.......................................................................................TATTGCTTGAGAATGCACGTAG................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0
..................................................ACGTGTATGCTAGTAGCTATAAC....................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0
..................................................ACGTGTATGCTCGTAGCTATAAA....................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0 0
......................................................................................ATATTGCTTGAGAATACACGTAG................................................... 23 1 1 2.00 2 1 0 1 0 0 0 0
.......................................................................................TATTGCTTGAGAATACGCGTAG................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGTATACACGTAG................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0
.......................................................................................TCTTGCTTGAGAATACACGTAG................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
..................................................ACGTGTATGCTCGTAGCT............................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTAAT.................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................................ATTGCTTGAGAATACACGT..................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................TATTGCTTGATGATACACGTAG................................................... 22 2 1 2.00 2 1 0 0 0 0 1 0
.......................................................................................TACTGCTTGAGACTACACGTAG................................................... 22 2 1 2.00 2 0 0 0 0 2 0 0
.................................................CACGTGTATGCTCGTAGCTATAA........................................................................................ 23 0 1 2.00 2 0 1 1 0 0 0 0
.......................................................................................TATTGCTTGAGAATACCCGT..................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................TATTGCTTTAGAATACACGT..................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGCATACACGTA.................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACTCGTAG................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0
........................................................................................TATTCTTGAGAATACACGTAG................................................... 21 3 4 1.25 5 3 2 0 0 0 0 0
.......................................................................................TATTGCTTGAGACTACACGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGACAATACACGTAGT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGAAG................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTTGAGAATACACACAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTTGAGAAGACACGTAG................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................TATAGCTTGAGAATACACGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTACTTGATAATACACGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTCGAGATTACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TACTGCTTGAGAATACACGT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ACGAGTATGCTCGTAGCTATAAC....................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0
..........................................................................................TGCTTGAGAATACACGTAA................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................TATTTCTTGAGAATACACGTAT................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTCCTTGAGAATACACGTAGA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................TCTATTGCTTGAGAATACACGTAG................................................... 24 2 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTTGCGACTACGCGTAG................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................TTGCTTGAGAATACACGTAGTCT................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0
..................................................ACGTGTATACTCACAGCTATAAC....................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTACTTGAGAATACACGTT.................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................ATTGCTTGCGAATACACGTAG................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................TATTACTTGAGAATACACGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACGCGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TCTTGCTTGAGAATACACGTAA................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCCTGAGAAGACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTGCGTGAGAATACACGGCG................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTCCTTGAGAATACACG...................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGATAATACACGTAT................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATCCACTTCG................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACTTAA................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTAAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACTAG.................................................... 21 3 4 1.00 4 1 0 3 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTAGCT................................................. 24 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTGAGAATACACCTAGC.................................................. 23 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTTGAGACTACACGT..................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTGTGAATACACGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ACGGGTATGCTCGTAGCTATAAC....................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTTGAGGATACCCTTAG................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0
........................................................................................ATTGATTGAGAATACACGTAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAACACACGT..................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0
..................................................ACGGGTATGCTCCGAGCTATAA........................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTGGT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TAATTCTTGATAATACACGTAG................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATAGCTTGAGAATACACGCAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.................................................CACGTGTATGCTCGTAGCTATA......................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................GCTTGAGAATCCACGTAG................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ACGCGTATGCTCGTAGCTATAAC....................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0
..................................................ACGTGTATGCTCGTAGATATAAC....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ACGTGTATGCTCGTAGATA........................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCGTGAGAATACACGTAG................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTGAGAGAACACGTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTTAGAAGACACGTAG................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
........................................................................................ATTGCTTGCGAAGACACGTAG................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................TATTGCTTGAGAATAGGCGTAG................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TTTTGCTTGAGACTACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTTGAAAATACACGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGCGGATACACGTGGT.................................................. 23 3 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTGAGAGCACACGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................TCTTGCTTGAGAATACACGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTCAGAATACACGT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTTAGAATACCCGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGTATACACGTA.................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
......................................................................................CTATTGCTTGAGAACACACGTAG................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGATTGAGAATATACGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAACACACGTA.................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTAGAGAATACACGGAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................TGTTGCTTGAGAATACACGTAGT.................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTGGAGAATACACGCAG................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTGATAATACACGGAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
........................................................................................ATTGCTTGAGAATACACGTAGC.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TGTTGCTTGAGAATACACGTA.................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATAAACGG..................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTTAGAATACACTTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TCTTGCTTGAGAATCCACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTTGTGAATACACGT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGATAATAAACGTAG................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTCCTTGAAAATACACGTAG................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
..................................................GCGTGTATGCTCGTAGCTATAAC....................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTTGAGAATACAAGTAGT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................AATATTGCTTGAGAATACACGTCG................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGACAATACACGT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................ACTATTGCTTGAGAATACACGTAG................................................... 24 2 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTTTAGAATCCACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TACTGCTTGAGAATACACGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATAAACGT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTTAGAATACACGTCG................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................TTGCTTGAGAATACACGT..................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
..................................................ACGTGTATGCTCGTAGCTATAAT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ACGTGTATTCTCGTAGCTATAAC....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTTAGAATACACGTAT................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACTA..................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................TATGCTTGAGAATACACGTA.................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTTAGAATACACGTAC................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTGAGAATACACGAA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTTACT................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTCTTGAGAATACACGTAG................................................... 19 1 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTTCAGAATACACGTAT................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTTGACAATACACGTAA................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTGATTGAGAATACACGTAT................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGGGAATACACGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGATTACACGTCG................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTGAGAATACACTTGG................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGGGATTACACGT..................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTGAGATTGCACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
......................................................................................TTATTGCTTGAGAATACACGTAA................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
......................................................................................GTATTGCTTGAGAATACACGTAG................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
..................................................AGGTGTATGCTCGTAGCTATAAC....................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTTGAGAATCCAAGTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTATTGCTTGAGAATAAACGTAG................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGACAATACACGTA.................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................TATTACTTTAGAATACACGTAG................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCCTGAGACTACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTTGAGAATACACTGAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
..................................................CCGTGTATGCTCGTAGCTATAAC....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCATGAGAATACACGTAG................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
...................................................................................GTTCTATTGCTTGAGAATACACGTAG................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTTGAGTATACACGTT.................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TCTTGCTTGAGAATCCACGTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATTCACGTAG................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
.................................................................................CAATGTTATTGCTTGAGAATACACG...................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTCCTTGAGAATTCACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTTGAGAATATAGGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................TATTGCTTGCGGGTACACGTA.................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTAAGAATACACGTAGT.................................................. 23 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATCGCTTGAGAATACACGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATCGCTTGAGAATACATGTAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTTGAGATTACACGTAG................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACACGTAGTT................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCGTGAAAATACACGTAC................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0
........................................................................................ATTGCTTGAGAATACACGGAG................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTGAGAATACCCGTAT................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................AGTGCTTGAGAATACACGTAG................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0
........................................................................................AGTTCTTGAGAATACACGTAG................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATCGCTTGAGAATAAACGTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................ATTGCTTGAGAATACACGTAGTC................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................TGTTGCTTGAGAATACACGCAG................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
........................................................................................ATTGCATGAGAATACACGTAG................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................TATTGCTTGAGAATACATGT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGCGACTACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................TAGTGCTTTAGAATACACGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGCGAATACCCGCAG................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTGAGAATACAAGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................CTAGTGCTTGAGAATACACGTAG................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0
.....................................................................................TCCATTGCTTGAGAATACACGTAG................................................... 24 3 1 1.00 1 0 0 0 0 1 0 0
..................................................ACCTGTATACTCATAGCTATAAC....................................................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATTGCTTGAGAATACACTTAT................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
..................................................ACGTGTATGCTCGTATCTATAAC....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................TTGCTTGAGAATACACGTAGT.................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................TATTGCTTGAGAATACCCGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTATTGCTTCAGAATACACTCAG................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................TATTTCTTGAGAATACACGCAG................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................TATTGCTTGATAATACACTAAG................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTTGAGCATACACCTTG................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTTGAGAATACACGACGA.................................................. 23 3 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................TATTACTTTAGAATACACGT..................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTTAGCATACACGCAG................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................TATTGCTTGAGACTACACGCC.................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................TATTGCTTTAGATTACACGTTG................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0
........................................................................................................................TTGTTCACCTATCAAAGGG..................... 19 2 3 0.33 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTGGAGAATTCACGGAG................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0
.......................................................................................AATTGCTTGACAATACACGCAG................................................... 22 3 3 0.33 1 0 0 0 0 0 1 0
.......................................................................................TATTGCTTGAGGATACACGTGT................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0
.......................................................................................TATTTCTAGAGATTACACGT..................................................... 20 3 5 0.20 1 0 0 0 1 0 0 0
.......................................................................................TATTGATTGATAATACACATAG................................................... 22 3 6 0.17 1 0 0 0 0 0 1 0
.................AGATTACGGTGTCCACTCC............................................................................................................................ 19 3 10 0.10 1 0 0 0 0 0 1 0

Anti-sense strand reads

TTCACCGTCGAGGGTCACCTAATGCCACCGCTGAGGTTAGAGGTTACCGGTGCACATACGAGCATCGATATTGGACTGTAGGTTACAATAACGAACTCTTATGTGCATCAAGTGGCTCTAAACAAGTCGTTAGTTTCCCCGGTGGCCGTCGCTATTTTGC

************************************.((((((....(((.((((((((.((((.(((.(((((.((.....))..))))).))))))).)))))))).)))....))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V108

head

 V107

male body
...............................................CGGTGCACATACGAGCATAGATA.......................................................................................... 23 1 1 1.00 1 1 0
.......................................................................................ATAACGAACTCTTATGTGCAT.................................................... 21 0 1 1.00 1 1 0
................................GAGGTTAGAGGTTACCGG.............................................................................................................. 18 0 1 1.00 1 1 0
............................................................................................................CAAGTGGCTCTAAACTTG.................................. 18 2 13 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4845:13905028-13905187 + der_26 confident AAGTGGCAGCT-----------------------------------------------------------------C-CCAGTGGATTACGGTGG---------------CGA---------------------C-----------TCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAGGG-GCCACCGGC---AGCGATA---AAACG
droYak3 2R:17032181-17032346 + dya_26 confident AAGTGGCAGCT---------------------------------------TTAGCT------CCCCAGTCATCTT-C-CA-GTTAA------------------------------------------------------------CCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATTAAAAAA-GCCACTGAC---AGCTATA--AAAACC
droSec2 scaffold_1:9448873-9449015 - dse_23 confident AAGTGGCAGCT-------------------------------------------------------------GCT-C-CAAGTGGATTACGATGG---------------CGT---------------------C-----------GCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAAGC----------------------------
droSim2 2r:12622831-12622974 - dsi-mir-137 Known_mirbase AAGTGGCAGCT-------------------------------------------------------------GCT-C-CAAGTGGATTACGATGG---------------CGT---------------------C-----------GCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAAG---------------------------CG
dm3 chr2R:11952743-11952905 - dme-mir-137 Known_mirbase AAGTGGCAGCT---------------------------------------GCCAGTTGGCGC----TGTTGTGCT-C-CAAGTGGATTACGATGG---------------CGT---------------------C-----------GCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATAAAAAGA-GC-------------------------
droEug1 scf7180000409672:857316-857500 - AAGTGCCAGAT---------------------------------------CTTAGTTATCCC----AGTTAACCG-C-CAAGTGGATTAAATGGT---------------CGA---------------------C-----------GGCAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAACCAAGCCACTGAA---AGCTATAAAAAAACT
droBia1 scf7180000301506:2893844-2894039 - AAGTGCCGGGT---------------------------------------CTTGGTTATCGC----AGTTATGTG-C-CAAGTGGATTAAAGTGG---------------CCA--------------------TCTCAACCGCAG-CCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAATTAAAACG-GTCACCGAATGGGGCGATA--AAAACA
droTak1 scf7180000415795:609442-609633 + AAGTGCCAGAT---------------------------------------CTTAGTTATCCC----AGTTATGCG-G-CAAGTGGATCAACGTGG---------------CGA---------------------C-----GGCCACCTCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAACGGAGCCACAAAACGGGGCGATA--AAAACT
droEle1 scf7180000491107:959921-960087 - AAGTGTGAAGTCCCG-------------------------------------AAGT------CCTTACTCATGCCGCACAAGTGGATTAAAGTGG---------------CGA---------------------C-----------GGCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAACGG-ACGAC----------------------
droRho1 scf7180000779911:146863-147047 + AAGTGGCAGCT---------------------------------------CGTGGTTAT---CCTTACTTATGCG-C-CAAGTGGATTAAAGTGG---------------CGA---------------------C-----------GGCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATGAAACGT-ACGGCCA---GGGGCCATTAAAAAGTG
droFic1 scf7180000453948:1198594-1198776 - GAGTGCCAGGA--------------------------------------TCTCGGTTATCCC----GGCTATTCG-C-AGCGAGGATTACAGTGG---------------CAG---------------------A-----------AGCTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAGCGC-GACACTACT---GACAATA--AAAACG
droKik1 scf7180000302476:2644160-2644327 - AAGTGCCAAGGA-------------------------------------TATCC---------ACCATTTGTCCC-C-C----GGACTAT--------------------------------------------A-----------AGCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAATCCAAACG-GAAATCGAA---AG-TGTA--GAAGCC
droAna3 scaffold_13266:15447191-15447346 + dan_23 confident AGGTGCGAGAA---------------------------------------CTTG-------------GTTATGTG-G-CAAGTGGATTAAAGTGG---------------CAA--------------------CC-----------TGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAA--ATGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAATCGAAGTG-GC-------------------------
droBip1 scf7180000396547:1600306-1600453 - GAG------GT---------------------------------------------------GCTTGGTTATGTG-C-CAAGTGGATTAAAGTGG---------------CAA--------------------TC-----------TGAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAT--GTGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATCGAAAGG----------------------------
dp5 3:16385893-16386074 - dps-mir-137 Known_mirbase AAGTGCGAGAT---------------------------------------TCTA----C---GACTAGTTATGTC-C-AAAGTGGATTAAGATGA---------------CAGCGACGGCC-----AAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAA-------------------------------
droPer2 scaffold_4:376890-377076 + dpe_44 confident AAGTGCGAGAT---------------------------------------TCTA----C---GACTAGTTACGTC-C-AAAGTGGATTAAGATGA---------------CAGCGACGGCCACGCCACGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAA-------------------------------
droWil2 scf2_1100000004954:1111004-1111093 - dwi_38 confident ---------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATGGCCACGTGTATTCTTATAGCTGTAACCTGTT--ATACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAAC--------------------------------------
droVir3 scaffold_10468:1954-2064 - dvi-mir-137 Known_mirbase --------------------------------------------------------------------------------------------TGG---------------AAA---------------------T-----------TGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGATCCAA-------------------------------
droMoj3 scaffold_6496:10609965-10610156 + dmo_25 confident AGCTGC-AG-TCCCGCCGGAGC----AGCAGCCGCAGCCGGAGCTGGCCGCTTGATTAT-------ATTTATG------AAGTGG-TCAACGGAGTGTGGACACAATTGGAAA---------------------T-----------TGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACA-------------------------------------
droGri2 scaffold_15245:16918490-16918675 - dgr_35 candidate-rescued AAT-GTGAA-TACCGTTGAAGAGATTAAGTTCCGATGCTGGTGC-ATCTGCTAAGTGATTTT----ATTTATGAAGC-AGAGGAGATT-----GG---------------AAA--------------------AT-----------TAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGA------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AAGTGGCAGCT-----------------------------------------------------------------C-CCAGTGGATTACGGTGG---------------CGA---------------------C-----------TCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAGGG-GCCACCGGC---AGCGATA---AAACGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................2217446.007446966446598252105741270
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................2111221.00122131511321489220
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................201301.00301121341482050
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC..................................................................................................231128.001284257184700
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................231102.00102918622560
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................21192.00924625111270
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................23181.00817612014420
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................22160.0060006103410
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................22131.003140504180
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATA....................................................................................................21120.002000061130
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................22118.00180720180
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC.........................................................23117.00171222190
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................20117.001751000110
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG..........................................................23112.00121010280
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................1918.0080120230
...................................................................................................................................................................ACGTGTATGCTCGTAGCTAT.....................................................................................................2017.0070010150
...................................................................................................................................................................ACGTGTATGCTCGTAGCTA......................................................................................................1917.0071000060
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................2216.0061102020
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTG...........................................................2115.0051000040
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAG..........................................................1915.0051000220
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA...........................................................2214.0041010110
................................................................................................................................................................................................................GCTTGAGAATACACGTAG..........................................................1814.0040000040
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTA...........................................................2014.0042000020
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA........................................................2413.0030010020
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA...................................................................................................2213.0030011100
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG.........................................................2313.0030001110
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTT...........................................................2113.0030100200
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACG.............................................................2013.0030000030
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA.........................................................2212.0022000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGT............................................................2112.0020000110
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTC...........................................................2112.0020010010
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAA..................................................................................................2312.0020010010
...................................................................................................................................................................ACGTGTATGCTCGTAGCT.......................................................................................................1812.0020000020
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGT............................................................1912.0020000020
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATAA...................................................................................................2312.0021000100
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAA..........................................................1911.0010000100
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTCT.......................................................2311.0010000010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAAA.........................................................2311.0010000010
............................................................................................................................................................................................................TATTGCTTGAGAATACACTAG...........................................................2141.0043000010
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATA....................................................................................................2211.0010000010
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGC.........................................................2211.0010000010
..............................................................................................................................................................................................................TTGCTTGAGAATACACGT............................................................1811.0010000010
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAT..................................................................................................2311.0010000010
............................................................................................................................................................................................................TATTGCTTGAGAATACACTA............................................................2011.0010000010
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAA..........................................................2311.0010010000
....................................................................................................................................................................................................C--AATGTTATTGCTTGAGAATACACG.............................................................2511.0010010000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT........................................................2411.0010000010
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGTC........................................................2311.0011000000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT.........................................................2111.0010000100
droYak3
AAGTGGCAGCT---------------------------------------TTAGCT------CCCCAGTCATCTT-C-CA-GTTAA------------------------------------------------------------CCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATTAAAAAA-GCCACTGAC---AGCTATA--AAAACCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................2213476.003476987668151583458514421000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................211412.004124358667218740000
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................191194.001941921100000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................201121.00121114901852270000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC..................................................................................................23196.009615455171400000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................23169.006914195819130000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................21144.0044029802410000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................22121.0021010051410000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................23121.002106233700000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................22120.0020101300420000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................22115.001523103510000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG..........................................................2318.00801401200000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTAT.....................................................................................................2018.00800003500000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................2018.00802101130000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC.........................................................2317.00700202300000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATA....................................................................................................2116.00603120000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGT............................................................2115.00500001400000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTT...........................................................2115.00500000410000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA...................................................................................................2214.00411010100000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTC...........................................................2113.00300000300000
................................................................................................................................................................................................................GCTTGAGAATACACGTAG..........................................................1812.00201100000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTA...........................................................2012.00201001000000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT.........................................................2112.00201100000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTCT..........................................................2211.00100000100000
.........................................................................................................................................................................................CCTGAC--ATCC--AATGTTATTGCT.........................................................................2211.00110000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACTC............................................................2011.00100001000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACA.................................................................................................2411.00100100000000
......................................................................................................................................................................TGTATGCTCGTAGCTATAAC..................................................................................................2011.00110000000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA...........................................................2211.00100010000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................2211.00100001000000
............................................................................................................................................................................................................TATTGCTTGAGAATACAC..............................................................1811.00110000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAAA.........................................................2311.00100000010000
..................................................................................................................................................................CACGTGTATGCTCGTAGCTA......................................................................................................2011.00100000010000
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAG..........................................................1911.00100000010000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGT............................................................1911.00101000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACTAG...........................................................2130.33100000010000
droSec2
AAGTGGCAGCT-------------------------------------------------------------GCT-C-CAAGTGGATTACGATGG---------------CGT---------------------C-----------GCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAAGC----------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................2216061.006061945110015412475
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................2111075.0010752622642781
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................201275.0027513788176
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................231211.0021116795264
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................231108.0010817272242
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC..................................................................................................23182.0082454429
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................21162.0062434510
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................20121.00215583
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC.........................................................23119.00190298
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT........................................................24114.00141508
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................22112.00120507
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................22110.00102305
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................22110.00100226
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATA....................................................................................................2117.0070043
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA...................................................................................................2215.0050320
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................1915.0051004
...................................................................................................................................................................ACGTGTATGCTCGTAGCTA......................................................................................................1914.0041003
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTT...........................................................2114.0040301
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA........................................................2414.0040022
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAG..........................................................1914.0041012
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG..........................................................2314.0042101
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTA...........................................................2014.0043001
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT.........................................................2113.0030021
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGT............................................................1913.0032001
................................................................................................................................................................................................................GCTTGAGAATACACGTAG..........................................................1813.0032001
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAAA.......................................................2512.0020110
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAT..........................................................2112.0021100
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGT............................................................2112.0020002
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTTT.......................................................2512.0020011
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT........................................................2212.0021001
.............................................................................................................................................................................................................ATTGCTTGAGAATACACG.............................................................1812.0020002
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATAA...................................................................................................2311.0010010
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACA.................................................................................................2411.0011000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTA........................................................2411.0010010
...................................................................................................................................................................ACGTGTATGCTCGTAGCTAT.....................................................................................................2011.0010001
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAAA.........................................................2311.0010001
...................................................................................................................................................................ACGTGTATGCTCGTAGCT.......................................................................................................1811.0011000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAGT.........................................................2411.0010100
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAC........................................................2411.0010010
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA...........................................................2211.0010010
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATA....................................................................................................2211.0010001
............................................................................................................................................................................................................TATTGCTTGAGAATACAC..............................................................1811.0010010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTTTT......................................................2611.0010001
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACCTG...............................................................................................2611.0011000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTT......................................................................................................1911.0010001
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG.........................................................2311.0010100
......................................................................................................................................................................TGTATGCTCGTAGCTATA....................................................................................................1811.0010001
............................................................................................................................................................................................................TATTGCTTGAGAATACACT.............................................................1911.0010001
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................2211.0010010
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA.........................................................2211.0011000
............................................................................................................................................................................................................TATTGCTTGAGAATACACTAG...........................................................2150.6030003
droSim2
AAGTGGCAGCT-------------------------------------------------------------GCT-C-CAAGTGGATTACGATGG---------------CGT---------------------C-----------GCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAAG---------------------------CGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................2211537.0015374794711350164602352563240115000
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................1911299.001299896932060210100010000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................211218.00218323013767452283900000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC..................................................................................................231130.001307044420200000800000
............................................................................................................................................................................................................TATTGCTTGAGAATACAC..............................................................18192.0092000029000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................23157.0057604012510740900000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................20150.0050500143900010000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................23133.0033020100002070201000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGT............................................................21126.0026000000026000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................21122.0022000301700100001000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACC.................................................................................................24117.0017000011600000000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA...........................................................22112.001200000007220100000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATA....................................................................................................2117.00711000300000200000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................2217.00750000000001100000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTAT.....................................................................................................2016.00600000600000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................2215.00540000000000100000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGT............................................................1913.00300001200000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG.........................................................2313.00320100000000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACG.............................................................1813.00330000000000000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTT...........................................................2213.00300000003000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACA.............................................................1913.00320100000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACA.................................................................................................2412.00200000000000101000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACG.............................................................2012.00200100001000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCT.......................................................................................................1812.00200000200000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................2212.00200000000000002000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTA......................................................................................................1912.00200000200000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAAA.......................................................2511.00100000000000001000
..................................................................................................................................................................CACGTGTATGCTCGTAGCT.......................................................................................................1911.00101000000000000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGA............................................................2111.00100000001000000000
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATAAC..................................................................................................2411.00100000100000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACA...............................................................1711.00100000000010000000
.........................................................................................................................................................................................................TGTTATTGCTTGAGAA...................................................................1611.00100000001000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGG............................................................2011.00110000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAG..................................................................................................2311.00100000000000100000
............................................................................................................................................................................................................TATTGCTTGAGAATAC................................................................1611.00100000000010000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA........................................................2411.00110000000000000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAA..........................................................2311.00100000001000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTACC.........................................................2311.00100000000000100000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAGA.........................................................2411.00100000000100000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACT.............................................................2011.00100000001000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCC.......................................................................................................1811.00110000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGC........................................................................................................1711.00100000001000000000
................................................................................................................................................................................................................GCTTGAGAATACACGTAG..........................................................1811.00100000100000000000
............................................................................................................................................................................................................TATTGCTTGAGAATA.................................................................1540.25100000000001000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACTAG...........................................................2160.17100000000001000000
dm3
AAGTGGCAGCT---------------------------------------GCCAGTTGGCGC----TGTTGTGCT-C-CAAGTGGATTACGATGG---------------CGT---------------------C-----------GCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATAAAAAGA-GC-------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................22147512.004751200002450001303004003500033403121448129614625400001110001210131310046036332700000000000000000122246100300232129434311942137121820396371120245853834602677027273906444175359954801698000020000031200231205820400000010004422532892017769329620105615771810622912724200210753251423300050057000000716000000300227884772717110625937200000005364020804622143042264292153178500936334012010612120619100103171272842415131012135113821413148539204156841019147822913989377593242617254223117441017875442824715796710269108257954353322160
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................2119825.00982500002000000100200200000200017710514320000000000010000000000011200000000000000000000020000000100702222900003110000010000021542319010949267666690000000000000000000050000000000000001902870145128816071137223432040000032073101000708000000020000000000143002100115000100002413014137250036120125221000844000031110201110133201220012250759161568215310765053020226213094170112501863612413087237013935939558203110
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................2012863.00286300000000000000100000010000000229271010000101000000000000003110000000000000000000001000000000000110000006000000010000001620102110131912000000000000000000000100000000100000315502910314223505016514000007202300004020000000100000000003901003200300000000340241210013480131900001138010010000000001101101001100177180177236022811127100174055136000020310100202056762449182725000010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................2311019.001019000000000000000000000001000000000000000000000010000100120134200000000000000000000000000000000002001000017000000100010006101010301065000000000000000010005000000000000000181101200516014020016000000221211000104000000010000001001120000001000103000015120110020038011700003260101000000100002000001000113629343256284020100301394901043115201122030301672310252124100220
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC..................................................................................................231689.00689000000001300000000000000000000000000000000000100000000000010000000000000000000000005000001030141302003200010001303000300200160100100000000000000000000000000000000000026500260022101003206500000013001000000100000000000000000000010011100200000001916013030069034000030000000100100000000000000200182421330964111010012057020002300101001024411300000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................221470.004700000410002010000000000000000000000000000000000000000000000000000000000000000000030000000001901701010037100000010010005000011201109800000000000000000000000000000000000026390210011381160250280000002200100000000000000000000000000100001000000001000000020000150100000210000000110000000000000000001912211700221000006059000000000000000021610301000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................231389.0038900001000000000000000000001000000000000000000000000000000000000000000000000000000200000000001001110000000000000100000320002120213700000000000000000000000000000000000011110900712170250240000001300000000000000000000000000000100003000200004300110230000630220000440000000001100000000000000002017211409126000000120614000010010001101014143323010000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................211389.00389000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000010000010000000000000006002033301002000000000000000000000000000000000000395402601434220024103500000018000000000000000000000000000000100000000000000003302000000200400000700000000000000000000000000079410010101100003034010000100000000011510220000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................221334.00334000010000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000004000000000000017000000101201412000000000000000000000000000000000000121607003403050900000070100000001000000000000000000012000010002001000030001010046122000031300000000000000000000000000015171690111202000080210000000110011000074740724000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTATC......................................................261110.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006149000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................22176.007600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000202500000000000000000000000000000000000010100400000201000000002100000000000000000000000000100000000000000010000000100001100100000300000000000000010000000000032320200010000302001000110000000000310010000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................19162.0062000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000001130000000000000000000000000000000000000040200021011102000002000000030100000000000000000000000000000000000001000201000000100000000000010100100000000000000015220000000000010200000000000000000710003000100
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................20159.0059000000000000000000600000000010000000000000000000000000000000000000000000000000000000000000000001210000000000000000000000000000000000000000000000000000000000000000000340200380712100000001100000000000000000000000000002000000000000000005000000000000000000000000000000000000000000000011020100000000001100000000000000000100000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTC...........................................................21153.0053000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000004028000000000000000000000000000000000000220000010000010000000000000000000000000000000000000000000000000000000000400000100000001000000000000000000000000000001010010000000901400000000000000000200010000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATA....................................................................................................21150.0050000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000400010100000000000000000000000000000000000000000330000210002020000003000000000000000000000000000000000000000000000000100001000501400002000000000000000000000000000006110200000000000100000000000000000100100000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTAT.....................................................................................................20146.0046000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000680200000405060000001000000000000000000000000000001000000000000000000100100000000000000000000000000000000000000000014010000000000000100000000000000000100000000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG..........................................................23138.0038000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000006000000000000001000000000200000000000000000000000000000000000000230200200100000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001330200000000300000000000000000001210000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA...................................................................................................22138.0038000010000100000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000230000010001013000000000000000000000000000000000000000000000000000001501100000000000000100000000000000000000010000021030100010000101000000000000000000310000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC.........................................................23136.0036000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000130000000000040000000000000000100000000000000000000000000000000000001000100000001000002100000000000000000000000000043010401000000201000000000000000000210001000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTT...........................................................21131.0031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000210000000000020000000000000000000000000000000000000000000000000000000001000000500200000000000000000000000000000000001020000000000100100000000000000000810111000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGT............................................................21131.00310000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000003000000000000000000010000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000021200001000000001200000000000000000110000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................22126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000420100020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000100000000000000000000200111000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGG............................................................20124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000002040000004000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000021400000000000100100000000000000000100000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTA...........................................................20124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000001000000000000000000000000000000000000000140200110002020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001310000000000000000000000010000000100000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGT............................................................19119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100010101040000001000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000110000010000000000000000000000000200020000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAAA.........................................................23118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000320300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032100010000000000000000000000000000200000000000
................................................................................................................................................................................................................GCTTGAGAATACACGTAG..........................................................18118.0018000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000500000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000001010110000000001000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT........................................................24117.0017000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000400000000000000000000000000001100000000000000201000000000000000301000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTCT..........................................................22115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000002032000000000000000000000000000000000000200100000000010000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAC........................................................24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG.........................................................23114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001011000002000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010100000000000002000000000000000000020001000000
............................................................................................................................................................................................................TATTGCTTGAGAATACAC..............................................................18113.0013000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100400000000000000000000000000000000000000000102000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA........................................................24111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000010000100000000000000000000000000000210000001000
..................................................................................................................................................................CACGTGTATGCTCGTAGCT.......................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010100000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011010000000000000000000000000000000300000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGC............................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000100000001100000000000000000000000000000000000010000000000200100000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTG...........................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000100000000000000000200000000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA...........................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000200100000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTA......................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000001110000000000000000000000000000000100000000000
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAG..........................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000200000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000010000000000000100100000000000000000000000000000000000000000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT........................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000100000000000000000000200100000000
droEug1
AAGTGCCAGAT---------------------------------------CTTAGTTATCCC----AGTTAACCG-C-CAAGTGGATTAAATGGT---------------CGA---------------------C-----------GGCAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAACCAAGCCACTGAA---AGCTATAAAAAAACTSizeHit CountTotal NormTotal
No Reads
droBia1
AAGTGCCGGGT---------------------------------------CTTGGTTATCGC----AGTTATGTG-C-CAAGTGGATTAAAGTGG---------------CCA--------------------TCTCAACCGCAG-CCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAATTAAAACG-GTCACCGAATGGGGCGATA--AAAACASizeHit CountTotal NormTotal
No Reads
droTak1
AAGTGCCAGAT---------------------------------------CTTAGTTATCCC----AGTTATGCG-G-CAAGTGGATCAACGTGG---------------CGA---------------------C-----GGCCACCTCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAACGGAGCCACAAAACGGGGCGATA--AAAACTSizeHit CountTotal NormTotal
No Reads
droEle1
AAGTGTGAAGTCCCG-------------------------------------AAGT------CCTTACTCATGCCGCACAAGTGGATTAAAGTGG---------------CGA---------------------C-----------GGCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAACGG-ACGAC----------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAGTGGCAGCT---------------------------------------CGTGGTTAT---CCTTACTTATGCG-C-CAAGTGGATTAAAGTGG---------------CGA---------------------C-----------GGCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATGAAACGT-ACGGCCA---GGGGCCATTAAAAAGTGSizeHit CountTotal NormTotal
No Reads
droFic1
GAGTGCCAGGA--------------------------------------TCTCGGTTATCCC----GGCTATTCG-C-AGCGAGGATTACAGTGG---------------CAG---------------------A-----------AGCTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAGCGC-GACACTACT---GACAATA--AAAACGSizeHit CountTotal NormTotal
No Reads
droKik1
AAGTGCCAAGGA-------------------------------------TATCC---------ACCATTTGTCCC-C-C----GGACTAT--------------------------------------------A-----------AGCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAATCCAAACG-GAAATCGAA---AG-TGTA--GAAGCCSizeHit CountTotal NormTotal
No Reads
droAna3
AGGTGCGAGAA---------------------------------------CTTG-------------GTTATGTG-G-CAAGTGGATTAAAGTGG---------------CAA--------------------CC-----------TGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAA--ATGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAATCGAAGTG-GC-------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................2213316.003316386452406375121289
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................211436.00436810211785214
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................201198.00198430635078
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................231123.001233163183845
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC..................................................................................................23180.008032724242
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................21173.0073236014624
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................22142.004210171023
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................23131.00316119212
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGT............................................................19113.0013200227
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTT...........................................................21111.0011000218
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................1919.009020322
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC.........................................................2318.008040310
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGT............................................................2118.008000332
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG..........................................................2318.008220103
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................2218.008100214
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATA....................................................................................................2116.006011103
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................2215.005030101
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA...................................................................................................2215.005100004
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA...........................................................2215.005000014
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT........................................................2214.004001003
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT........................................................2414.004000220
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................2014.004220000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTA...........................................................2013.003000012
............................................................................................................................................................................................................TATTGCTTGAGAATACAC..............................................................1813.003010200
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG.........................................................2313.003100200
.............................................................................................................................................................................................................ATTGCTTGAGAATACACG.............................................................1812.002000200
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTC...........................................................2112.002000020
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTTT..........................................................2212.002000110
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAG..........................................................1912.002100010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGC............................................................2012.002000200
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTTA..........................................................2211.001100000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAT..................................................................................................2311.001000100
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTG...........................................................2111.001000001
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAT..........................................................2111.001000001
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA.........................................................2211.001000100
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA........................................................2411.001000010
................................................................................................................................................................................................................GCTTGAGAATACACGTAG..........................................................1811.001010000
....................................................................................................................................................................CGTGTATGCTCGTAGCTATA....................................................................................................2011.001100000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACT.................................................................................................2411.001000100
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................2211.001010000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGCTT..........................................................2211.001000100
............................................................................................................................................................................................................TATTGCTTGAGAATACACGG............................................................2011.001000100
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGC.........................................................2211.001010000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTTC..........................................................2211.001000100
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAA..........................................................2311.001010000
droBip1
GAG------GT---------------------------------------------------GCTTGGTTATGTG-C-CAAGTGGATTAAAGTGG---------------CAA--------------------TC-----------TGAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAT--GTGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATCGAAAGG----------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AAGTGCGAGAT---------------------------------------TCTA----C---GACTAGTTATGTC-C-AAAGTGGATTAAGATGA---------------CAGCGACGGCC-----AAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAA-------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................2214840.0048401157882635343776734074527
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................211267.0026704811211412547001
...................................................................................................................................................................ACGTGTATACTCATAGCTATAAC..................................................................................................231204.002040796148250000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................211111.00111082105252005
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................20191.0091092716012000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................23177.0077013149111614000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................22160.00600171745141002
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTA...........................................................20142.0042017050146000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................22132.003202245010000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................23123.00230327220007
..................................................................................................................................................................CACGTGTATACTCATAGCTATAA...................................................................................................23116.00160201823000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG..........................................................23113.00130531000004
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................20111.00110331021001
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGT............................................................19110.00100101071000
...................................................................................................................................................................ACGTGTATACTCATAGCTATA....................................................................................................21110.00100111320020
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC.........................................................2319.0090032220000
..................................................................................................................................................................CACGTGTATACTCATAGCTATA....................................................................................................2219.0090212400000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGC.........................................................2217.0070061000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................1917.0071120030000
...................................................................................................................................................................ACGTGTATACTCATAGCTATAA...................................................................................................2217.0070200410000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................2216.0060100032000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................2215.0050310100000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT.........................................................2114.0040300010000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT........................................................2214.0040000112000
................................................................................................................................................................................................................GCTTGAGAATACACGTAG..........................................................1814.0040300100000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA.........................................................2213.0030300000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGT............................................................2113.0030001020000
..................................................................................................................................................................CACGTGTATACTCATAGCTATAAC..................................................................................................2413.0030021000000
..................................................................................................................................................................CACGTGTATACTCATAGCTAT.....................................................................................................2112.0020200000000
...................................................................................................................................................................ACGTGTATACTCATAGCTATAACA.................................................................................................2412.0020020000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTT...........................................................2112.0020000002000
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAG..........................................................1912.0020101000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT........................................................2412.0020000002000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACG.............................................................1811.0010100000000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGC.........................................................2111.0010001000000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTA...........................................................1911.0010100000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGTA........................................................2311.0010000001000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTACA.........................................................2311.0010000010000
...................................................................................................................................................................ACGTGTATACTCATAGCTAT.....................................................................................................2011.0010000010000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTA........................................................2211.0010000010000
...................................................................................................................................................................ACGTGTATACTCATAGCTA......................................................................................................1911.0010000100000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAA..........................................................2111.0010100000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGTT........................................................2311.0010000010000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGCT...........................................................2111.0010000010000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTT...........................................................2011.0010000001000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGC............................................................2011.0010001000000
.........................................................................................................................................................................................................TGTTATTGCTTGAGAATACACGTAG..........................................................2511.0010100000000
droPer2
AAGTGCGAGAT---------------------------------------TCTA----C---GACTAGTTACGTC-C-AAAGTGGATTAAGATGA---------------CAGCGACGGCCACGCCACGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAA-------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................2212043.0020432422089638770302
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................211375.0037505214720120
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................201163.0016302264887
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................19166.00666200130
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................23153.0053001192211
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTA...........................................................20136.003600016182
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................22121.00210401250
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGT............................................................19120.00200007130
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................21120.0020071480
..................................................................................................................................................................CACGTGTATACTCATAGCTATAA...................................................................................................23116.0016301570
...................................................................................................................................................................ACGTGTATACTCATAGCTATAAC..................................................................................................23116.0016905200
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................23114.0014020651
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................2218.008000530
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................2218.008010160
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG..........................................................2318.008000071
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................2217.007001420
..................................................................................................................................................................CACGTGTATACTCATAGCTAT.....................................................................................................2116.006000240
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC.........................................................2315.005011120
..................................................................................................................................................................CACGTGTATACTCATAGCTATA....................................................................................................2214.004002110
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................2014.004011020
..................................................................................................................................................................CACGTGTATACTCATAGCT.......................................................................................................1913.003000030
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTT...........................................................2013.003000030
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT........................................................2213.003000300
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAG..........................................................1912.002010001
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGTT........................................................2312.002000020
.............................................................................................................................................................................................................ATTGCTTGAGAATACACG.............................................................1812.002000200
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTGT..........................................................2212.002000020
...................................................................................................................................................................ACGTGTATACTCATAGCTATAA...................................................................................................2212.002010100
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGT............................................................2112.002000110
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT.........................................................2112.002000020
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTT...........................................................2111.001000010
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGG.........................................................2211.001000010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTTA..........................................................2211.001000010
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGCC...........................................................2011.001000010
...................................................................................................................................................................ACGTGTATACTCATAGCTATA....................................................................................................2111.001100000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT........................................................2411.001000010
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGAA........................................................2211.001000010
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGA.........................................................2111.001000010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTG...........................................................2111.001000100
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAA..........................................................2111.001000100
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTTT..........................................................2211.001000010
..................................................................................................................................................................CACGTGTATACTCATAGCTATAAT..................................................................................................2411.001000010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTC...........................................................2111.001000010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTATC.........................................................2311.001000010
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACG.............................................................2011.001000010
..............................................................................................................................................................................................................TTGCTTGAGAATACACGT............................................................1811.001010000
...................................................................................................................................................................ACGTGTATACTCATAGCT.......................................................................................................1811.001100000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGGGA.......................................................2511.001010000
...................................................................................................................................................................ACGTGTATACTCATAGCTAT.....................................................................................................2011.001000100
droWil2
---------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATGGCCACGTGTATTCTTATAGCTGTAACCTGTT--ATACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAAC--------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................2214067.00406713843017814041917
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................211375.003751222368261
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................191306.003063020004
...................................................................................................................................................................ACGTGTATTCTTATAGCTGTAAC..................................................................................................231135.001359911286
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................201109.0010921416572
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................23149.0049125329
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................21132.0032024017
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................23119.001912484
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG..........................................................23115.0015020211
...................................................................................................................................................................ACGTGTATTCTTATAGCTGTA....................................................................................................21114.0014120011
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................22112.001212009
...................................................................................................................................................................ACGTGTATTCTTATAGCTGTAA...................................................................................................2219.00970011
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................2217.00701123
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................2016.00602004
...................................................................................................................................................................ACGTGTATTCTTATAGCTGT.....................................................................................................2015.00550000
...................................................................................................................................................................ACGTGTATTCTTATAGCTG......................................................................................................1914.00440000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTG...........................................................2114.00400103
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA...........................................................2214.00400013
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT........................................................2213.00300003
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACG.............................................................2013.00330000
...................................................................................................................................................................ACGTGTATTCTTATAGCTGTAACC.................................................................................................2413.00330000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTTT-......................................................2312.00200011
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAG..........................................................1912.00200011
............................................................................................................................................................................................................TATTGCTTGAGAATACACGG............................................................2012.00220000
..................................................................................................................................................................CACGTGTATTCTTATAGCTGTAA...................................................................................................2312.00220000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................2212.00200011
.............................................................................................................................................................................TTATAGCTGTAACCTGTT--AT.........................................................................................2011.00110000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTA...........................................................2011.00100010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTC...........................................................2111.00100010
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT.........................................................2111.00101000
...................................................................................................................................................................ACGTGTATTCTTATAGCTGTAACCT................................................................................................2511.00110000
............................................................................................................................................................................................................TATTGCTTGAGAATACAC..............................................................1811.00100010
...................................................................................................................................................................ACGTGTATTCTTATAGCTGC.....................................................................................................2011.00110000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA........................................................2411.00100010
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA.........................................................2211.00101000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTT...........................................................2111.00100001
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC.........................................................2311.00100001
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGT............................................................2111.00100001
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTGT..........................................................2211.00100001
................................................................................................................................................................................................................GCTTGAGAATACACGTAG..........................................................1811.00100010
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAGG.........................................................2011.00101000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTCC..........................................................2211.00100010
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................2211.00100010
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTA...........................................................1911.00100001
............................................................................................................................................................................................................TATTGCTTGAGAATACACTAG...........................................................2150.20100001
droVir3
--------------------------------------------------------------------------------------------TGG---------------AAA---------------------T-----------TGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGATCCAA-------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................2213284.003284357652179112103000017812354134916212601406305235342041060001020133000000000100211552118601353020201680152170418143863
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................211867.0086702436010000000069402750522704737000002304020001020100000000000000001113548300200000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................201414.004140323003000000002616192033182342011000041000000000000000000000000011001632300000002000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................191126.00126387100000010000010000001000000010000000000000000000000000019051000000014010000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC..................................................................................................23182.00823171130000000000603332011000001000000000000000000000000000006515100000000000010000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................21179.0079005540000000000211210000000001000000000000000000000000000000111000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................23147.0047004400000000002101330220000001000100000000000000000000000001111100000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................22136.00360000000000000043314303400000001100000000000000000000000000009000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................23133.00330225000000000022021000100000020000000000000000000000000000202100000000000002034
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................22120.00200000010000000021021210000000100000000000000000000000000000015300000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATG.................................................................................38116.00160000000000000000000000000000000000000000000000000000000403900000000000000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................22114.00140011000000000010011000100000100100000000000000000000000000005100000000000000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG..........................................................23112.00120020000000000031001101100000000000000000000000000000000000002000000000000000000
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATAA...................................................................................................23110.00100001000000000032010000200000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTA...........................................................20110.00100060000000000000010100000000000000000000000000000000000000001100000000000000000
..................................................................................................................................................................CACGTGTATGCTCGTAGCT.......................................................................................................19110.00100200000000000000112000000000000000000000000000000000000000004000000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATA....................................................................................................2119.0090001000000000001001021200000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................2218.0080001000000000000011000000000000000000000000000000000000000005000000000000000000
..................................................................................................................................................................CACGTGTATGCTCGTAGCTAT.....................................................................................................2117.0070010000000000002001001000000000000000000000000000000000000002000000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA...................................................................................................2216.0060000000000000010012000000000000100000000000000000000000000001000000000000000000
................................................................................................................................................................................................................GCTTGAGAATACACGTAG..........................................................1815.0050021000000000010000000010000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTT...........................................................2115.0050000000000000000100000000000000000000000000000000000000000003100000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGC............................................................2015.0050000000000000000000000000000000000000000000000000000000000005000000000000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGT............................................................1914.0040020000000000000000000000000000000000000000000000000000000002000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC.........................................................2314.0040000000000000000000000000000000000000000000000000000000000013000000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTAT.....................................................................................................2014.0040010000000000010000000000000000000000000000000000000000000002000000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGT................................................................................3913.0030000000000000000000000000000000000000000000000000000010000200000000000000000000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................2013.0030010000000000000000000100000000000000000000000000000000000000100000000000000000
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATAAA..................................................................................................2413.0030100000000000011000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATA....................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000002000000001000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTC...........................................................2113.0030000000000000000101000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAG..........................................................1912.0020001000000000000100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTA......................................................................................................1912.0020000000000000000000000000000010000000000000000000000000000001000000000000000000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGT............................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGT............................................................2112.0020000000000000010010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CACGTGTATGCTCGTAGCC.......................................................................................................1912.0021100000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACC.................................................................................................2412.0020000000000000000000000000000200000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG.........................................................2312.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTA........................................................2411.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATC....................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATC....................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGG............................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCT.......................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGTTT-T.....................................................2511.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACC.............................................................1911.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA.........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................CACGTGTATGCTCGTAGCTA......................................................................................................2011.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATAC...................................................................................................2311.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGC.........................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTCCC.........................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTCA..........................................................2211.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA...........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................................................................TGCTTGAGAATACACGTA...........................................................1811.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGCCC..........................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTT...........................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATAAAAA................................................................................................2611.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGA............................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATT....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA........................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT.........................................................2111.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GCTTGAGAATACACGTAGTAT-T.....................................................2230.3310000000000000010000000000000000000000000000000000000000000000000000000000000000
droMoj3
AGCTGC-AG-TCCCGCCGGAGC----AGCAGCCGCAGCCGGAGCTGGCCGCTTGATTAT-------ATTTATG------AAGTGG-TCAACGGAGTGTGGACACAATTGGAAA---------------------T-----------TGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACA-------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................2218045.008045231813480016542187952
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................211796.0079670018937818141
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................201399.0039942086192970
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC..................................................................................................231223.0022352012201633
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................211207.002071390710492
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................231153.0015315421284837
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT..........................................................22146.004660111838
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................23145.0045111410712
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................20132.00321800293
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC..........................................................22129.00290022241
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC.........................................................23118.00181012140
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATA....................................................................................................21115.00150302100
............................................................................................................................................................................................................TATTGCTTGAGAATACACG.............................................................19113.0013004621
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTT...........................................................21112.0012202503
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA..........................................................2219.009202410
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT-.......................................................2418.008210113
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTA...........................................................2018.008700100
...............................................................................................................................................................................................................TGCTTGAGAATACACGTAG..........................................................1917.007500110
...........................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG..........................................................2315.005400100
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGT............................................................1915.005202001
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................2215.005200120
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA...................................................................................................2214.004011200
................................................................................................................................................................................................................GCTTGAGAATACACGTAG..........................................................1813.003100020
............................................................................................................................................................................................................TATTGCTTGAGAATACACGC............................................................2012.002000110
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG.........................................................2312.002100010
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAT..........................................................2112.002000020
...................................................................................................................................................................ACGTGTATGCTCGTAGCTAT.....................................................................................................2012.002001100
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTG...........................................................2112.002000101
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTC-.......................................................2411.001000001
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTATA.........................................................2311.001000001
................................................................................................................................................................................................................GCTTGAGAATACACGTAGT.........................................................1911.001100000
..............................................................................................................................................................................................................TTGCTTGAGAATACACGT............................................................1811.001000010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTCT..........................................................2211.001000100
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATAA...................................................................................................2311.001100000
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTC...........................................................2111.001000100
..................................................................................................................................................................CACGTGTATGCTCGTAGCTATA....................................................................................................2211.001000010
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAAA.........................................................2311.001000001
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTCA..........................................................2211.001001000
droGri2
AAT-GTGAA-TACCGTTGAAGAGATTAAGTTCCGATGCTGGTGC-ATCTGCTAAGTGATTTT----ATTTATGAAGC-AGAGGAGATT-----GG---------------AAA--------------------AT-----------TAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGA------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG..........................................................221175.0017512946
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTA...........................................................21118.0018612
............................................................................................................................................................................................................TATTGCTTGAGAATACACGT............................................................20112.001266
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG..........................................................2118.00880
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT.........................................................2313.00321
..............................................................................................................................................................................................................TTGCTTGAGAATACACGTAG..........................................................2013.00330
............................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA.........................................................2312.00211
....................................................................................................................................................................CGTGTATGCTCGTAGCTATAAC..................................................................................................2211.00110
.............................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT.........................................................2211.00110
...................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC..................................................................................................2311.00110

Generated: 10/20/2015 at 07:41 PM