ID:

der_251

 Coordinate:

scaffold_4690:2867631-2867772 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.2 -29.0 -28.7

Flybase annnotation

intron [Dere\GG18489-in]; utr3 [utr3_minus_9981]; utr5 [utr5_minus_11611]; CDS [Dere\GG18489-cds]; intron [Dere\GG18489-in]; CDS [Dere\GG18489-cds]

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+

Sense Strand Reads

CGTGTGTTTTGTGTTGTTTCCCCGCAGCTAGCTAAAAACAAATCGATATGGTGAGTGCAGGCTGTTTATTGCGGCGCTGTTTACTGTTTACGGTCGCACCGCAAGTCGCTTTTCGGCGCCTTGGAAAACCAACACTCAAGTTTCCCTCTTTGTTTTCCTTTCTTCTCCCTCTCTCTCTCACTCTCTTCGCAGGCAGCTTACACCGAGGATCAGTTGGCTGGTAAGTCGAATGAAGAAGAGCG

*******************************************(((...((((((((((((((((.....))))).)))...........((((...))))((((.((((....)))).)))).........))))))......))...)))....************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 V107

male body		 V108

head

 V040

embryo

 M057

embryo
........................................................................................................................TTGGAAAACCAACACTCAAGT..................................................................................................... 21 0 1 6.00 6 4 2 0 0 0
.....................................................................................................................................................................................................TTACACCGAGGATCAGTTGGC........................ 21 0 1 2.00 2 0 0 1 0 1
........................................................................................................................................................................................................CACCGAGGATCGGTTGGCTGA..................... 21 2 1 1.00 1 1 0 0 0 0
..........................................................AGGCTGTTTATTGCGGCGCTG................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.............................................................................................................TTGTCGGCGCCTTGGAAAACCAACACT.......................................................................................................... 27 1 1 1.00 1 0 0 1 0 0
..................................AAAACAAATCGATATGGC.............................................................................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0
.............................AGCTAAAAACAAATCGATATGG............................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................CTTCGCAGGCAGCTTACACCGAGG.................................. 24 0 1 1.00 1 0 0 0 0 1
............................................................................................................................................................................................TATGGCAGCTTACACCGAGGATCAGT............................ 26 3 1 1.00 1 1 0 0 0 0
........................................................................................................................TTGGAAAACCAACACTCAAGCC.................................................................................................... 22 2 1 1.00 1 0 0 0 0 1
..................................................................................................................................................................................................AGCTTACACCGAGGCTCAGT............................ 20 1 1 1.00 1 0 0 0 1 0
..................................................................................................................................................................................................AGCTTACACCGAGGATCAGTTGGC........................ 24 0 1 1.00 1 0 0 1 0 0
.......................................................................................................................CTTGGAAAACCAACACTCAAGT..................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
......................................................................................TTTACGGTCGCACCGCAAGGC....................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................TCCCCGCAGCTAGCTAAAAACA.......................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................GCAGCTTACACCGAGGATC............................... 19 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................................ACCGAGGATCAGTTGGCTGA..................... 20 1 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................................TTACACCGAGGATCAGTTGGCTGA..................... 24 1 1 1.00 1 1 0 0 0 0
............................................................................................GTCGCACCGCAAGTCGCTTTTCGG.............................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0
........................................................................................................................TTGGAAAACCAACACTCAAGTT.................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................ACACCGAGGATCAGTTGGC........................ 19 0 1 1.00 1 0 1 0 0 0
....................................AACAAATCGATATGGTGAGTGCGGGCT................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0
...............GTTTCCCCGCCGCTAGCT................................................................................................................................................................................................................. 18 1 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................TTCGCAGGCAGCTTACACCGA.................................... 21 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................GCAGCTTACACCGAGGATCAGTTGG......................... 25 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................GCTTACACCGAGGATCAGTTTG......................... 22 1 1 1.00 1 0 0 0 1 0
...GTGTTTTGTGTTGTTTCCCCGCAGCT..................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0
...............................................................................................................................................................................................GGCAGCTTACACCGAGGATCCGTTGG......................... 26 1 1 1.00 1 0 0 0 1 0
..................................................................TATTGCGGCGCTGTTTACTGTTTAC....................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..................................................................................ACTGTTTACGGTCGCACCGCA........................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
.......................GCAGCTAGCTAAAAACAAAT....................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
........................................................................................................................GTGGAAAACCAACACTCAAGT..................................................................................................... 21 1 2 0.50 1 0 1 0 0 0
..........................................................................................................................................................................................................CCGAGGATCAGTTGGCTGAAT................... 21 3 4 0.25 1 0 0 1 0 0
............................................................................................................................................................................................................................GTAAGTGGAATGAAGAATGGC. 21 3 10 0.10 1 0 0 0 0 1
.............................................................................................................................................................................TCTCTCACTCCCTTCCCCGG................................................. 20 3 13 0.08 1 0 0 0 1 0
.........................................................................................................................................................................TCACTCTCTCACTCCCTTCCC.................................................... 21 3 17 0.06 1 0 0 0 0 1

Anti-sense strand reads

GCACACAAAACACAACAAAGGGGCGTCGATCGATTTTTGTTTAGCTATACCACTCACGTCCGACAAATAACGCCGCGACAAATGACAAATGCCAGCGTGGCGTTCAGCGAAAAGCCGCGGAACCTTTTGGTTGTGAGTTCAAAGGGAGAAACAAAAGGAAAGAAGAGGGAGAGAGAGAGTGAGAGAAGCGTCCGTCGAATGTGGCTCCTAGTCAACCGACCATTCAGCTTACTTCTTCTCGC

**************************************************************************************(((...((((((((((((((((.....))))).)))...........((((...))))((((.((((....)))).)))).........))))))......))...)))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total V107

male body		 M055

female body

 V108

head

 V040

embryo

 M057

embryo
....................................................................................................................................GTGAGTTCAAAGGGTCAA............................................................................................ 18 2 14 6.29 88 33 51 4 0 0
....................................................................................................................................GTGAGTTCAAAGGGTCAAA........................................................................................... 19 2 10 3.10 31 18 10 3 0 0
.......................................................................................................................GAACCTTTTGGTTGTGAGTTC...................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...............................................................................................CGTGGCGTTCGGCGAAAAGCC.............................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0
.............................................................GACAAATAACGCCGCGACAAA................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
.......................CGTCGATCGATTTTTGTT......................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0
..........................................................................................GCCAGCGTGGCGTTCAGCGAA................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................TGAGAAGCTTCCGTGGAATG......................................... 20 3 7 0.14 1 0 0 0 1 0
......................................................................................................................................................................................GAGAAGCTTCCGTGAAATGT........................................ 20 3 9 0.11 1 0 0 0 1 0
...........................................................................................................................................................AGGACAGATGAGGGACAGA.................................................................... 19 3 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................AGAAGCTTCCGTGAAATGT........................................ 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4690:2867581-2867822 - der_251 candidate-rescued CGTGTGTTTTGTGTTGT--TT---CCC--CGCAGCTAGCT-AA--AAACAAATCGATATGGTGAGTG------CA-----G--GCTGTTTATTGCGGCGCT-------------------------GTTTA-------CTGTTTACGG------TCG---------------------CA-------------------------C---------------------------CGCAAGT---CGCT--TTT------CGGCGCCT------------TGGAAAACCAACACTCAAGTTTCCCTCTTTGTTTTCCTT-TC---TTCTCCCTCTCTCTCTCACTCTC---TTCGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTAAGTCG----AA-----------T------------G-A------------------AG-----AAG--AG--------CG
droYak3 X:2953191-2953445 + dya_1824 CGTGTGTTTTGTGTTGT--TT---CCC--CCCAGCTTACT-AA--AAACAAATCGATATGGTGAGTG------CA-----G--GCTGTTTATTGCGATGCT-------------------------GTTTA-------CTGTTTACAACCGCTTTCG---------------------CA-------------------------C---------------------------TGGAAGT---CGGT--TTT------CGGCGCCT------------TGGAAAACCAACACTCAAGTTTCCTTCTTTGTTTTCCTT-TT---CTCTCCCTCTCTCTCTTTCTCTCTCTGTCGCAGGCCGCTTACACCGAG-GATCAGTTGGCTGGTGAGTCG----AA-----------TG-------------A------------------AG-AAGAAGA--AG--------TG
droSec2 scaffold_4:1240647-1240878 + dse_366 candidate-rescued CGTGTATTTTGTGTTGT--TT---TCT--CTCAGATAGCT-AA--AAACAAATAGAAATGGTGAGTG------CA-----G--GCTGTTTATTGCGGCGCT-------------------------GTTTA-------CTGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGCGCCT------------TTGGAAGCCAGCACTCAAGTTTCCCTCATTGTTTTCCTT-TC---TTTCC-CCCTCTCTC------A----CCCGCAGGCAGCATACACCGAG-GATCAGTTGGCTGGTGAGTCG----AA-----------TC-------GCTCAAG-------------------GA----GCA--GG--------CG
droSim2 x:5151392-5151625 - dsi_289 candidate-rescued CGTGTATTTTGTGTTGT--TT---TCT--CTCAGATAGCT-AA--AAACAAATAGAAATGGTGAGTG------CA-----G--GCTGTTTATTGCGGCGCT-------------------------GTTTA-------TTGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGCGCCT------------TTGGAAGCCAGCACTCAAGTTTCCCTCATTGTTTTCCTT-TC---TTCCCCCCCTCTCTC------TC---CCCGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTCG----AA-----------TC-------GCTCGAG-------------------GA----GCA--GG--------CG
dm3 chrX:5516257-5516499 - dme-mir-3645 Known_mirbase CGTGTATTTTGTGTTGT--TT---TCC--CTCAGATAGCT-AA--AAACAAATCGATATGGTGAGTG------CA-----G--GCTGTTTATTGCGGCGCT-------------------------GTTTA-------CTGTTTACGA------TCG---------------------CA-------------------------C---------------------------TGGAAGT--GCGCT--TTC------CGGCGCCT------------TTGGAAGCCAGCACTCAAGTTTCCTTCATTGTTTTCCTT-TC---TTTCCCCTCTCTCTC------TC---CCCGCAGGCAGCTTATACCGAG-GATCAGTTGGCTGGTGAGTTG----AA-----------TC-------GCACGAG-------------------GA----CCA--GA--------CG
droEug1 scf7180000409095:554340-554563 - CGTGT-TTTTGTGTTGT--TTTTTCCC--ATCAGCTAGCTAAA--AAACAAATCGATATGGTGAGTGGTGGTGCA-----G--CCTGTTTACTGTTAGACT-----------------------CAGTTAA-------CTGTTTATTT-------TG----------------------AT------------------------T---------------------------TGGAACG---CCCT--TTT------CGGCGTCT------------T-GCCAACCGATACTCAAGTTTCCTTCTTTGTTTTCCTC-TT---TCTCT-----CCGTT------TC---GTTGTAGGCAGCTTACACCGAG-GATCAATTGGCTGGTAAGT-----------------------------------------------------------------------------
droBia1 scf7180000302069:308653-308906 + CGTGT-TTTTGTGTTGT--TT---TC---CCCAGCTAGCT-CA--AAACGAATAGAGATGGTGAGTA------CGAGCCGG--ACTGCTTATTGCGGCGCTGCTGCGGCTCGCT------------GTTTA-------CCGTTCACTA------TTGGCCGTTTGCCATC--GTCTCG-A-------------------------A---------------------------TGGAAGG---CCGC--CCT------GGAAGCC-------------T-GGGAATCGGTACTCAAGTGTCCCT---TCTTTTC---------TTTT----------C------TC---GTTGCAGGCGGCGTACACCGAG-GATCAGTTGGCTGGTGAGTGTTTCCAA-----------AG-------GCTCC-----------------------------C--AG--------AG
droTak1 scf7180000415289:630429-630641 + CGTGT-TTTTGTGTTGT--TT---TCCTCATCAGCTAGCT-AA--AAACAAATCGATATGGTGAGTG------------------------------------------------------------TTTA-------CTGTTTATTA------TCGTGT------------GTGTTT-A-------------------------T---------------------------TGGAAGG---CCGC--TT---------------TAACAGTAA-----GG------GTACTAATC-------CTTTGTTGTCTTT-TCTTGTCTT----------C------TC---GTTGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGTC----C-----------TCGTCCTTCGCA-AAA-------------------AA----AAA--AA--------CA
droEle1 scf7180000491001:943116-943335 + CGTGT-TTTTGTGTTGT--TT---TCC--CCCAGCTAGCT-AA--AAACAAATCGATATGGTGAGCG------CA-----A--AGTGTTTAATGCAGCACTGTTT---GTTGTT------------GTTTA-------TTGTTTATTG------TTG-----------------------T------------------------T---------------------------CGGAGCG---CCTTATTTT------GGGCGTGT------------TGTGAACGGAGCACTCAAGTTCTCTTCTTTGTTTTTCTT-TT---TTTTT----------------CC---GATGCAGGCAGCTTACACCGAG-GATCAATTGGCTGGTGAGT-----------------------------------------------------------------------------
droRho1 scf7180000779976:765817-766020 + CGTGT-TTTTGTGTTGT--TA---TCC--CCCAGCTAACT-AA--AAACAAATCGATATGGTGAGTG------CA-----A--AGTGTTTATTGCAGCACT-------------------------GTTTA-------TTGTTTATTG------TTG-----------------------T------------------------T---------------------------CGGAACG---CCTT-GTTC------TGGCGACT------------T-GAGAACGGCTACTCAAGTTTATTTCTTTGTTTTTCTT-TT---T--------------------TC---GATGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGT-----------------------------------------------------------------------------
droFic1 scf7180000454072:2595261-2595463 + CGTGT-TTTTGTGTTGT--TT---TC---CCCAGTTAGCT-AA--AAACAAATCGATATGGTGAGTG------GT-----C--TGTGTTTACTGCAGCACT-------------------------GTTTA-------C-GTTTGCTG------TCG----------------------A-------------------------C---------------------------CGCAAGA---CCGT--TGG------CGGCGTCT------------T-GAAAACGGACACTCA-GTTTCTGCCTT-C------------TGTTTT----------C------TC---GTTGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGTT-----------------------------------------------------------T--AA--------CG
droKik1 scf7180000302469:622759-622987 + CGTGTTTTTTGTGTTAT--TCTTTCCC--CCCATCCAGCT-AA--AAACCAATCGATATGGTGAGTG------GG--TCGG--CCT--------------------------------------CCGTTTACTATTTATTGTTTATTG---------------------------------AGGCCA------------------A---------------------------CGGCAGTGTGTGAC--TTT------CGCCGCC-------------T-GAAAACGGACACTCATGTTTT-TTCTTTGTTTTTCTTGTT-TTTTTT----------T------TC---GTTGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGT-----G-----------T------------G-T-------------------GT----GTG--GG--------TG
droAna3 scaffold_13117:2022194-2022454 + CGTGT--TTTGTGTTTTTCTCTTCTCC--CTCAGCTAGCT-AAAAAAACAAATCGATATGGTAAGTG------CGT---GA--AGTAGGCAACATGACACTTTGT---A-----TATTTGACAA-------CAATTGAATGTTTACG---------------------------------------------------------------------------------------GGACCT----CCTATTTCCCGCTT--------CGGCAGCAACGAT-GACGACGACGACTCATGTTTTC--CTTTGTTTTGTTG-TT---T---------------------------TTCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGC---------------------------------GAGTGCGAGTGTGTGT---------GTGAGTGGGGCTGTGTG
droBip1 scf7180000396425:45749-46007 - CGTGT--TTTGTGTTTTTCTCTTCTCC--CTCAGCTAGCT-AAAAAAACAAATCGATATGGTAAGTG------CGT---GA--AGTAGGCAACATGACACTTTGT---A-----TATTTAATAA-------CAATTGAATGTTTACG---------------------------------------------------------------------------------------GGAGCT---CCTA-TTTCCCGCTT--------CGCCAGCAACGAT-GACGACGTCGACTCATGTTTTC--CTTTGTTTTGTTG-TT---T---------------------------TTCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGC---------------------------------GTGTGTGTGTGTGTGTGCAT-CTGTGAG--AG--------TG
dp5 XL_group1a:8129287-8129543 - dps_3853 CGTGT--TTTGTGTTGT--TT---TTC--CTCAGCCAGCCTAC--CAACAAATCGATATGGTAAGTG------GG--CTGAACAGTA--------------------------------------------------A------------------------TTGATAT-CG---------TGGCCAATATATAGCCGCTACGTATCGTATGGCTTTTCCACTGAGTTTTGC-----------------------------------------------TGGGAG------CTAATGTGTTC--TTTTGTTTGGT----T------------------------------TTACAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGTTTCTCTCTCTATCTCTCTC-TCTCTCGCACTCTGAGTGGGTGTGTGTGT---------GGAAGTT--------CA
droPer2 scaffold_15:491107-491304 - -GTGT--TTTGTGTTGT--TT---TTC--CCCAGCCAGCCTAC--CAACAAATCGATATGGTAAGTA------GG--CCGAAAAGTA--------------------------------------------------A------------------------TTGATAA-CG---------TGGCCAATATATAGCCACTACGTATCGTATGGCTTTTCCACTGATTTTTGCTGGGA-----------------------------------------------------ATTAATGTGTTT--TTTTGTTTGGT----T------------------------------TTCCAGGCAGCTTACACCGAGGGATCAGTGGGCTGGTGAGT-----------------------------------------------------------------------------
droWil2 scf2_1100000004515:1861169-1861211 + TTTTT-GTTTGTTTTTC--TT---CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTCGGTCTCTG----CCTC---TTTG-------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
CGTGTGTTTTGTGTTGT--TT---CCC--CGCAGCTAGCT-AA--AAACAAATCGATATGGTGAGTG------CA-----G--GCTGTTTATTGCGGCGCT-------------------------GTTTA-------CTGTTTACGG------TCG---------------------CA-------------------------C---------------------------CGCAAGT---CGCT--TTT------CGGCGCCT------------TGGAAAACCAACACTCAAGTTTCCCTCTTTGTTTTCCTT-TC---TTCTCCCTCTCTCTCTCACTCTC---TTCGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTAAGTCG----AA-----------T------------G-A------------------AG-----AAG--AG--------CGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................................................................................................................................................................................................T------------TGGAAAACCAACACTCAAGT..........................................................................................................................................................................2116.0064000200
.........................................................................................................................................................................................................................................................................................................................................................................TTACACCGAG-GATCAGTTGGC.....................................................................................2112.0020100010
..........................................................................A-----G--GCTGTTTATTGCGGCGCT-------------------------G.....................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..........................................A--AAACAAATCGATATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
....................................AGCT-AA--AAACAAATCGATATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.........................................................................................................................................................................................................................................................................................................................................................C---TTCGCAGGCAGCTTACACCGAG-G...............................................................................................2411.0010100000
.........................................................................................................................................................................................................................................................................T------------TGGAAAACCAACACTCAAGCC.........................................................................................................................................................................2211.0010100000
......................................................................................................................................................................................................................................................................................................................................................................AGCTTACACCGAG-GATCAGTTGGC.....................................................................................2411.0010000010
........................................................................................................................................................................................................................................................................CT------------TGGAAAACCAACACTCAAGT..........................................................................................................................................................................2211.0011000000
....................T---CCC--CGCAGCTAGCT-AA--AAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
....................................................................................................................................................................................................................................................................................................................................................................GCAGCTTACACCGAG-GATC............................................................................................1911.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................ACCGAG-GATCAGTTGGCTGA..................................................................................2011.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................TTACACCGAG-GATCAGTTGGCTGA..................................................................................2411.0011000000
...................................................................................................................................................G------TCG---------------------CA-------------------------C---------------------------CGCAAGT---CGCT--TTT------CGG...............................................................................................................................................................................................................2411.0010001000
.........................................................................................................................................................................................................................................................................T------------TGGAAAACCAACACTCAAGTT.........................................................................................................................................................................2211.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................ACACCGAG-GATCAGTTGGC.....................................................................................1911.0010000100
.............................................................................................................................................................................................................................................................................................................................................................TTCGCAGGCAGCTTACACCGA..................................................................................................2111.0011000000
....................................................................................................................................................................................................................................................................................................................................................................GCAGCTTACACCGAG-GATCAGTTGG......................................................................................2511.0010000100
...GTGTTTTGTGTTGT--TT---CCC--CGCAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
.........................................................................................TATTGCGGCGCT-------------------------GTTTA-------CTGTTTAC..................................................................................................................................................................................................................................................................................................................................2511.0011000000
..................................................................................................................................A-------CTGTTTACGG------TCG---------------------CA-------------------------C---------------------------CGCA.......................................................................................................................................................................................................................................2111.0010000100
..............................GCAGCTAGCT-AA--AAACAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................CCGAG-GATCAGTTGGCTGAAT................................................................................2140.2510000010
droYak3
CGTGTGTTTTGTGTTGT--TT---CCC--CCCAGCTTACT-AA--AAACAAATCGATATGGTGAGTG------CA-----G--GCTGTTTATTGCGATGCT-------------------------GTTTA-------CTGTTTACAACCGCTTTCG---------------------CA-------------------------C---------------------------TGGAAGT---CGGT--TTT------CGGCGCCT------------TGGAAAACCAACACTCAAGTTTCCTTCTTTGTTTTCCTT-TT---CTCTCCCTCTCTCTCTTTCTCTCTCTGTCGCAGGCCGCTTACACCGAG-GATCAGTTGGCTGGTGAGTCG----AA-----------TG-------------A------------------AG-AAGAAGA--AG--------TGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................................................GTGAGTG------CA-----G--GCTGTTTATTGC.....................................................................................................................................................................................................................................................................................................................................................................................22121.002166900000000
........................................................................................................................................................................................................................................................................CT------------TGGAAAACCAACACTCAAGT..........................................................................................................................................................................2219.00906300000000
............................................................GTGAGTG------CA-----G--GCTGTTTATTG......................................................................................................................................................................................................................................................................................................................................................................................2114.00403000010000
............................................................GTGAGTG------CA-----G--GCTGTTTATT.......................................................................................................................................................................................................................................................................................................................................................................................2013.00330000000000
........................................................................................................................................................................................................................................................................CT------------TGGAAAACCAACACTCAAG...........................................................................................................................................................................2112.00202000000000
............................................................GTGAGTG------CA-----G--GCTGTTTATTGCGATGC................................................................................................................................................................................................................................................................................................................................................................................2712.00200200000000
........................................................................................................................................................................................................................................................................CT------------TGGAAAACCAACACTCAAGC..........................................................................................................................................................................2212.00201100000000
.....GTTTTGTGTTGT--TT---CCC--CCCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201000010000
.........................................................................................................................................................................................................................................................................T------------TGGAAAACCAACACTCAAGT..........................................................................................................................................................................2112.00201000010000
........................................................................................................................................................................................................................................................................................................................................................................CTTACACCGAG-GATCAGTTGGC.....................................................................................2212.00201000010000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGA..................................................................................2112.00201000010000
.........................................................................................................................................................................................................................................................................T------------TGGAAAACCAACACTCAAGC..........................................................................................................................................................................2112.00201100000000
..............................................................................................................................................................................................................................................................................................................................................................................CCGAG-GATCAGTTGGCTGG..................................................................................1912.00211000000000
.......................................................................................................................................................................................................................................................................................................................................................................GCTTACACCGAG-GATCAGTTGGCTGA..................................................................................2611.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................CGCTTACACCGAG-GATCAGTTG.......................................................................................2211.00100010000000
.............................................................................................................................................................................................................................................................................................................................................................................ACCGAG-GATCAGTTGGCTGA..................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................CGAG-GATCAGTTGGCTGG..................................................................................1811.00101000000000
........TTGTGTTGT--TT---CCC--CCCAGCTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.......TTTGTGTTGT--TT---CCC--CCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
............................................................GTGAGTG------CA-----G--GCTGTTTTA........................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........TGTGTTGT--TT---CCC--CCCAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.......TTTGTGTTGT--TT---CCC--CCCAGCTTACT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.........TGTGTTGT--TT---CCC--CCCAGCTTACT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................CTTACACCGAG-GATCAGTT........................................................................................1911.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTACACCGAG-GATCAGTTGGCTGA..................................................................................2411.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGAAT................................................................................2311.00101000000000
.................................................................................................................................TA-------CTGTTTACAACCGCTTTCG---------------------..................................................................................................................................................................................................................................................................................................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACCGAG-GATCAGTTGGCTG...................................................................................1911.00100000100000
............................................................GTGAGTG------CA-----G--GCTGTTTATTGA.....................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.......................................................................................................................................................................................................................................................................CCT------------TGGAAAACCAACACTCAAGT..........................................................................................................................................................................2311.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................ACACCGAG-GATCAGTTGGCT....................................................................................2011.00101000000000
.....GTTTTGTGTTGT--TT---CCC--CCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................CGCTTACACCGAG-GATCAGTTGG......................................................................................2311.00100000010000
............................................................GTGAGTG------CA-----G--GCTGTTTATTGCG....................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..............TGT--TT---CCC--CCCAGCTTACT-AA--AAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................CGCTTACACCGAG-GATCAGTTGGCTGA..................................................................................2711.00110000000000
.......TTTGTGTTGT--TT---CCC--CCCAGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
................................AGCTTACT-AA--AAACAAATCGATATGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.......TTTGTGTTGT--TT---CCC--CCCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droSec2
CGTGTATTTTGTGTTGT--TT---TCT--CTCAGATAGCT-AA--AAACAAATAGAAATGGTGAGTG------CA-----G--GCTGTTTATTGCGGCGCT-------------------------GTTTA-------CTGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGCGCCT------------TTGGAAGCCAGCACTCAAGTTTCCCTCATTGTTTTCCTT-TC---TTTCC-CCCTCTCTC------A----CCCGCAGGCAGCATACACCGAG-GATCAGTTGGCTGGTGAGTCG----AA-----------TC-------GCTCAAG-------------------GA----GCA--GG--------CGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................CT--CTCAGATAGCT-AA--AAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040040
........................................................................................................................................................................................................................................................................CT------------TTGGAAGCCAGCACTCAAG...........................................................................................................................................................................2113.0031200
....................................................................................................................................................................................................................................................................................................................................................................................GATCAGTTGGCTGGTGAGTCG----.......................................................................2113.0030300
.........................CT--CTCAGATAGCT-AA--AAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030030
............................................................GTGAGTG------CA-----G--GCTGTTTATTGCGG...................................................................................................................................................................................................................................................................................................................................................................................2413.0031200
.........................................................................................................................................................................................................................................................................................................................................................................ATACACCGAG-GATCAGTTGGCTGA..................................................................................2413.0031200
.............................CTCAGATAGCT-AA--AAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
.........................................................................................................................................................................................................................................................................T------------TTGGAAGCCAGCACTCAAGA..........................................................................................................................................................................2112.0020101
.....ATTTTGTGTTGT--TT---TCT--CTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020110
........................................................................................................................................................................................................................................................................CT------------TTGGAAGCCAGCACTCAAGT..........................................................................................................................................................................2212.0020110
.........................................................................................................................................................................................................................................................................T------------TTGGAAGCCAGCACTCAAGT..........................................................................................................................................................................2112.0020200
.................................................................................................CGCT-------------------------GTTTA-------CTGTTTACGA------TC........................................................................................................................................................................................................................................................................................................................2112.0021001
...................................................................................................................................................................................................................................................................................................................................................................GGCAGCATACACCGAG-GATCAGT.........................................................................................2312.0020020
..................................................................................................................................A-------CTGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--A..........................................................................................................................................................................................................................2112.0020200
..........................................................................................................................................................TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGCGC............................................................................................................................................................................................................1811.0011000
....................................................................................................................................................................................................................................................................................................................................................................GCAGCATACACCGAG-GATCAG..........................................................................................2111.0010001
.....................................................................................................................................................................................................................................................................................................................TTTTCCTT-TC---TTTCC-CCCTCT.....................................................................................................................................2111.0011000
...................TT---TCT--CTCAGATAGCT-AA--AAA....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
....TATTTTGTGTTGT--TT---TCT--CTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................................................................................................GCGCCT------------TTGGAAGCCAGCACTCAAG...........................................................................................................................................................................2511.0010010
.......................................................................................................................................................................................................................................................................CCT------------TTGGAAGCCAGCACTCAAG...........................................................................................................................................................................2211.0011000
..................................................AATAGAAATGGTGAGTG------CA-----....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
............................................................GTGAGTG------CA-----G--GCTGTTTATTGCGA...................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
......................................................................................................................................................................................................................................................................GCCT------------TTGGAAGCCAGCACTCAAG...........................................................................................................................................................................2311.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCG----AA-----------TC-------GCTCAAG-------------------GA----GCA--GG--------..2211.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................A-----------TC-------GCTCAAG-------------------GA----GCA--GG--------CG1911.0011000
.........................................................................................................................................................................................................................................................................................................................................................................ATACACCGAG-GATCAGTTGGCTG...................................................................................2311.0010010
...............................................................................................................................................................................................................................................................................................................................................................CGCAGGCAGCATACACCGAG-GATCAGT.........................................................................................2711.0010100
................................................................................................................................TTA-------CTGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------..................................................................................................................................................................................................................2511.0010100
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGA..................................................................................2111.0011000
..........................................................................................................................................................................................................................................................................................................................................................................TACACCGAG-GATCAGTTGGCTGA..................................................................................2311.0011000
...........................................................................................................................................TGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------..................................................................................................................................................................................................................2111.0010100
..........GTGTTGT--TT---TCT--CTCAGATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...................................................................................................................................................................................................................................................................................................CTCAAGTTTCCCTCATTGTTT............................................................................................................................................................2111.0011000
...GTATTTTGTGTTGT--TT---TCT--CT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..................................ATAGCT-AA--AAACAAATAGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
...............................................ACAAATAGAAATGGTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...............................................................................................................................................................................................................................................................................................................................................................................CGAG-GATCAGTTGGCTGGTT................................................................................2011.0010100
.........................................................................................................................................................................................................................................................................................................................................................................ATACACCGAG-GATCAGTT........................................................................................1811.0010010
..............................................................................................................................................TTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGG...............................................................................................................................................................................................................2111.0011000
.........................................................................................................................................................................................................................................................................................................................................................................ATACACCGAG-GATCAGTTG.......................................................................................1911.0010100
......................................................................................................................................................................................................................................................................................TTGGAAGCCAGCACTCAAGT..........................................................................................................................................................................2011.0010001
..........................................................................................ATTGCGGCGCT-------------------------GTTTA-------CTGTT.....................................................................................................................................................................................................................................................................................................................................2111.0011000
...............................................................................................................................................TACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGCT.............................................................................................................................................................................................................2211.0010100
.........TGTGTTGT--TT---TCT--CTCAGATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................TGGCTGGTGAGTCG----AA-----------TC-------GCTC.............................................2211.0011000
......................................................................................................................................................................................................................................................................................................................................................................AGCATACACCGAG-GATCAGTTG.......................................................................................2211.0010100
.............TTGT--TT---TCT--CTCAGATAGCT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
...............GT--TT---TCT--CTCAGATAGCT-AA--AAA....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
........................................................................................................................................................................................................................................................................CT------------TTGGAAGCCAGCACTCAAGC..........................................................................................................................................................................2211.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCG----AA-----------TC-------GCTCAAG-------------------GA----G................1811.0011000
.........................................................................................................................................................................................................................................................................T------------TTGGAAGCCAGCACTCAAG...........................................................................................................................................................................2011.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................TCG----AA-----------TC-------GCTCAAG-------------------GA----GCA--GT--------T.2211.0010001
..........................T--CTCAGATAGCT-AA--AAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droSim2
CGTGTATTTTGTGTTGT--TT---TCT--CTCAGATAGCT-AA--AAACAAATAGAAATGGTGAGTG------CA-----G--GCTGTTTATTGCGGCGCT-------------------------GTTTA-------TTGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGCGCCT------------TTGGAAGCCAGCACTCAAGTTTCCCTCATTGTTTTCCTT-TC---TTCCCCCCCTCTCTC------TC---CCCGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTCG----AA-----------TC-------GCTCGAG-------------------GA----GCA--GG--------CGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGG..................................................................................21132.00321814000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................ACACCGAG-GATCAGTTGGCTG...................................................................................21112.001247000000000001000
.................................................................................................................................TA-------TTGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--...........................................................................................................................................................................................................................2114.00430000000000001000
........................................................................................................................................................................................................................................................................CT------------TTGGAAGCCAGCACTCAAGT..........................................................................................................................................................................2214.00401000000000003000
...............................................................................................................................................TACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGC..............................................................................................................................................................................................................2113.00300000001000002000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCG----AA-----------TC-------GCTCGAG-------------------GA----G................1813.00330000000000000000
............................................................GTGAGTG------CA-----G--GCTGTTTATTGC.....................................................................................................................................................................................................................................................................................................................................................................................2212.00220000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TACACCGAG-GATCAGTTGGCT....................................................................................2112.00211000000000000000
.................................................................................................................................................CGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGC..............................................................................................................................................................................................................1912.00202000000000000000
...........................................................................................TTGCGGCGCT-------------------------GTTTA-------TTGTTTACGA------..........................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGAA.................................................................................2212.00200200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GCTTACACCGAG-GATCAGTTG.......................................................................................2112.00200000001001000000
.................................................................................................................................TA-------TTGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--T..........................................................................................................................................................................................................................2212.00220000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCT....................................................................................1912.00202000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AGCTTACACCGAG-GATCAGTTGGCTGA..................................................................................2712.00202000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGA..................................................................................2112.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................ACACCGAG-GATCAGTTGGCTGG..................................................................................2212.00201100000000000000
.........................................................................................................................................................................................................................................................ATT------CGGCGCCT------------TTGGAAGCC.....................................................................................................................................................................................2011.00110000000000000000
.......................................................AAATGGTGAGTG------CA-----G--GCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.......................................................................................TTTATTGCGGCGCT-------------------------GTTTA-------TT........................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
...............................................................AGTG------CA-----G--GCTGTTTATTGCGG...................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................TCAGTTGGCTGGTGAGTCG----.......................................................................1911.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGGA.................................................................................2211.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGGTGAGTCG----AA-----------TC-------GCTCGAG-------------------.......................2111.00100000000000000001
............................................................GTGAGTG------CA-----G--GCTGTTTAT........................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
............................................................GTGAGTG------CA-----G--GCTGTTTATTGCGG...................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................TACACCGAG-GATCAGTTGGCTG...................................................................................2211.00110000000000000000
.......................................................................................................................................................................................................................................................................................TGGAAGCCAGCACTCAAGTTT........................................................................................................................................................................2111.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................CCGAG-GATCAGTTGGCTG...................................................................................1811.00100000000001000000
................................................................................................................................TTA-------TTGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--...........................................................................................................................................................................................................................2211.00100000000000001000
..............................................................................................................................................TTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGG...............................................................................................................................................................................................................2111.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................CTTACACCGAG-GATCAGTTGGCTGAAT................................................................................2711.00100000000000001000
.........TGTGTTGT--TT---TCT--CTCAGATAGCT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..............................................................................................CGGCGCT-------------------------GTTTA-------TTGTTTACG.................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
...................TT---TCT--CTCAGATAGCT-AA--AAA....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CCGAG-GATCAGTTGGCTGA..................................................................................1911.00100100000000000000
............................................................GTGAGTG------CA-----G--GCTGTTTATTGCGGCA.................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGGT.................................................................................2211.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTT...................................................................................2011.00101000000000000000
............GTTGT--TT---TCT--CTCAGATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AGCTTACACCGAG-GATCAGTTGGCTGG..................................................................................2711.00101000000000000000
.............................................................TGAGTG------CA-----G--GCTGTTTATTGC.....................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..............................................................................................................................................TTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGT..............................................................................................................................................................................................................2211.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGGTGAGTCG----AA-----------TC-------GCTCG............................................1911.00100001000000000000
...GTATTTTGTGTTGT--TT---TCT--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGTTGGCTGGTGAGTCG----AA-----------..........................................................2011.00100001000000000000
................................................................................................GCGCT-------------------------GTTTA-------TTGTTTACGA------TCG------------------------------------------------------------------------------------...................................................................................................................................................................................................................................2311.00110000000000000000
.................................................................................................................................................CGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGCGC............................................................................................................................................................................................................2111.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGTCG----AA-----------TC-------GCTCGAG-------------------GA----G................1911.00110000000000000000
..................................................................................................................................................................................................................................................................................................................TTGTTTTCCTT-TC---TTCCC............................................................................................................................................1811.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGTGAGTCG----AA-----------TC-------GCTCGA...........................................2111.00100000000001000000
.....................................................................................TGTTTATTGCGGCGCT-------------------------GTTTA-------..........................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................CT--ATT------CGGCGCCT------------TTGGAAGC......................................................................................................................................................................................2111.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGGG.................................................................................2211.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CCGAG-GATCAGTTGGCTGG..................................................................................1911.00101000000000000000
.........................................................................................................................................................................................................................................................................T------------TTGGAAGCCAGCACTCAAGTT.........................................................................................................................................................................2211.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................TTACACCGAG-GATCAGTTGGCTGA..................................................................................2411.00101000000000000000
...................................................................................................................................................................................................................................................................................................CTCAAGTTTCCCTCATTG...............................................................................................................................................................1811.00100000100000000000
..........................................................................................................................................................................................................................................................................................................................................................................TACACCGAG-GATCAGTTGGCC....................................................................................2111.00101000000000000000
............................................................................................................................................GTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGCGCCT------------T.............................................................................................................................................................................................2911.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TACACCGAG-GATCAGTT........................................................................................1711.00100000000001000000
............GTTGT--TT---TCT--CTCAGATAGCT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..........................................................................................................................................TTGTTTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGC..............................................................................................................................................................................................................2611.00100100000000000000
........................................................................................................................................................................................................................................................................CT------------TTGGAAGCCAGCACTCAAG...........................................................................................................................................................................2111.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACCGAG-GATCAGTTGGCTGG..................................................................................2011.00101000000000000000
....................................................................................CTGTTTATTGCGGCGCT-------------------------GTTT..................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................CTTACACCGAG-GATCAGTTGGCT....................................................................................2311.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GCAGCTTACACCGAG-GATCAG..........................................................................................2111.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CGAG-GATCAGTTGGCTGA..................................................................................1811.00101000000000000000
..............................................................................................................................................TTACGA------TCG------------------------------------------------------------------------------------TGCGCT--ATT------CGGCGC............................................................................................................................................................................................................2411.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TCG----AA-----------TC-------GCTCGAG-------------------GA----GCA--GG--------..2111.00100010000000000000
.....ATTTTGTGTTGT--TT---TCT--CTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
....................................................TAGAAATGGTGAGTG------CA-----G--GCT..............................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GCAGCTTACACCGAG-GATCAGTTGGCT....................................................................................2711.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTG...................................................................................2011.00101000000000000000
...........TGTTGT--TT---TCT--CTCAGATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CGAG-GATCAGTTGGCTGGT.................................................................................1911.00101000000000000000
dm3
CGTGTATTTTGTGTTGT--TT---TCC--CTCAGATAGCT-AA--AAACAAATCGATATGGTGAGTG------CA-----G--GCTGTTTATTGCGGCGCT-------------------------GTTTA-------CTGTTTACGA------TCG---------------------CA-------------------------C---------------------------TGGAAGT--GCGCT--TTC------CGGCGCCT------------TTGGAAGCCAGCACTCAAGTTTCCTTCATTGTTTTCCTT-TC---TTTCCCCTCTCTCTC------TC---CCCGCAGGCAGCTTATACCGAG-GATCAGTTGGCTGGTGAGTTG----AA-----------TC-------GCACGAG-------------------GA----CCA--GA--------CGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

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.........................................................................................................................................................................................................................................................TTC------CGGCGCCT------------TTGGAAGCCAG...................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TTGGCTGGTGAGTTG----AA-----------TC-------GC...............................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................TTTATTGCGGCGCT-------------------------GTTTT-------..........................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CCT------------TTGGAAGCCAGCACTCAAGTTT........................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTG----AA-----------TC-------GCACGAG-------------------GA----CC...............2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATTGCGGCGCT-------------------------GTTTA-------CTG.......................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................CGCAGGCAGCTTATACCGA..................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AGTTGGCTGGTGAGTTG----AA-----------..........................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CGAG-GATCAGTTGGCTGA..................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................A-------------------------C---------------------------TGGAAGT--GCGCT--TTC------CGGA..............................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTTTGTGTTGT--TT---TCC--CTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GGCAGCTTATACCGAG-GATCA...........................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TC------CGGCGCCT------------TTGGAAGC......................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AAATCGATATGGTGAGTG------CA-----G--.................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TACCGAG-GATCAGTTGGCTGGT.................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GCTTATACCGAG-GATCAGTTGGCTGAA.................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
................................................CAAATCGATATGGTGAGTG------...........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.....ATTTTGTGTTGT--TT---TCC--CTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTGT--TT---TCC--CTCAGATAGCT-AA--A......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GTTGGCTGGTGAGTTG----AA-----------..........................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..............................................AACAAATCGATATGGTGAGTG------...........................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................GTG------CA-----G--GCTGTTTATTGCGGC..................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACCGAG-GATCAGTTGGCTGAA.................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...........TGTTGT--TT---TCC--CTCAGATAGCT-AA--.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CTCAGATAGCT-AA--AAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGTATTTTGTGTTGT--TT---TCC--CT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CGTGT-TTTTGTGTTGT--TTTTTCCC--ATCAGCTAGCTAAA--AAACAAATCGATATGGTGAGTGGTGGTGCA-----G--CCTGTTTACTGTTAGACT-----------------------CAGTTAA-------CTGTTTATTT-------TG----------------------AT------------------------T---------------------------TGGAACG---CCCT--TTT------CGGCGTCT------------T-GCCAACCGATACTCAAGTTTCCTTCTTTGTTTTCCTC-TT---TCTCT-----CCGTT------TC---GTTGTAGGCAGCTTACACCGAG-GATCAATTGGCTGGTAAGT-----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGTGT-TTTTGTGTTGT--TT---TC---CCCAGCTAGCT-CA--AAACGAATAGAGATGGTGAGTA------CGAGCCGG--ACTGCTTATTGCGGCGCTGCTGCGGCTCGCT------------GTTTA-------CCGTTCACTA------TTGGCCGTTTGCCATC--GTCTCG-A-------------------------A---------------------------TGGAAGG---CCGC--CCT------GGAAGCC-------------T-GGGAATCGGTACTCAAGTGTCCCT---TCTTTTC---------TTTT----------C------TC---GTTGCAGGCGGCGTACACCGAG-GATCAGTTGGCTGGTGAGTGTTTCCAA-----------AG-------GCTCC-----------------------------C--AG--------AGSizeHit CountTotal NormTotal
No Reads
droTak1
CGTGT-TTTTGTGTTGT--TT---TCCTCATCAGCTAGCT-AA--AAACAAATCGATATGGTGAGTG------------------------------------------------------------TTTA-------CTGTTTATTA------TCGTGT------------GTGTTT-A-------------------------T---------------------------TGGAAGG---CCGC--TT---------------TAACAGTAA-----GG------GTACTAATC-------CTTTGTTGTCTTT-TCTTGTCTT----------C------TC---GTTGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGTC----C-----------TCGTCCTTCGCA-AAA-------------------AA----AAA--AA--------CASizeHit CountTotal NormTotal
No Reads
droEle1
CGTGT-TTTTGTGTTGT--TT---TCC--CCCAGCTAGCT-AA--AAACAAATCGATATGGTGAGCG------CA-----A--AGTGTTTAATGCAGCACTGTTT---GTTGTT------------GTTTA-------TTGTTTATTG------TTG-----------------------T------------------------T---------------------------CGGAGCG---CCTTATTTT------GGGCGTGT------------TGTGAACGGAGCACTCAAGTTCTCTTCTTTGTTTTTCTT-TT---TTTTT----------------CC---GATGCAGGCAGCTTACACCGAG-GATCAATTGGCTGGTGAGT-----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGTGT-TTTTGTGTTGT--TA---TCC--CCCAGCTAACT-AA--AAACAAATCGATATGGTGAGTG------CA-----A--AGTGTTTATTGCAGCACT-------------------------GTTTA-------TTGTTTATTG------TTG-----------------------T------------------------T---------------------------CGGAACG---CCTT-GTTC------TGGCGACT------------T-GAGAACGGCTACTCAAGTTTATTTCTTTGTTTTTCTT-TT---T--------------------TC---GATGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGT-----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGTGT-TTTTGTGTTGT--TT---TC---CCCAGTTAGCT-AA--AAACAAATCGATATGGTGAGTG------GT-----C--TGTGTTTACTGCAGCACT-------------------------GTTTA-------C-GTTTGCTG------TCG----------------------A-------------------------C---------------------------CGCAAGA---CCGT--TGG------CGGCGTCT------------T-GAAAACGGACACTCA-GTTTCTGCCTT-C------------TGTTTT----------C------TC---GTTGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGTT-----------------------------------------------------------T--AA--------CGSizeHit CountTotal NormTotal
No Reads
droKik1
CGTGTTTTTTGTGTTAT--TCTTTCCC--CCCATCCAGCT-AA--AAACCAATCGATATGGTGAGTG------GG--TCGG--CCT--------------------------------------CCGTTTACTATTTATTGTTTATTG---------------------------------AGGCCA------------------A---------------------------CGGCAGTGTGTGAC--TTT------CGCCGCC-------------T-GAAAACGGACACTCATGTTTT-TTCTTTGTTTTTCTTGTT-TTTTTT----------T------TC---GTTGCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGT-----G-----------T------------G-T-------------------GT----GTG--GG--------TGSizeHit CountTotal NormTotal
No Reads
droAna3
CGTGT--TTTGTGTTTTTCTCTTCTCC--CTCAGCTAGCT-AAAAAAACAAATCGATATGGTAAGTG------CGT---GA--AGTAGGCAACATGACACTTTGT---A-----TATTTGACAA-------CAATTGAATGTTTACG---------------------------------------------------------------------------------------GGACCT----CCTATTTCCCGCTT--------CGGCAGCAACGAT-GACGACGACGACTCATGTTTTC--CTTTGTTTTGTTG-TT---T---------------------------TTCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGC---------------------------------GAGTGCGAGTGTGTGT---------GTGAGTGGGGCTGTGTGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......TTTGTGTTTTTCTCTTCTCC--CTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002020000
........................................................................................................................................................................................................................................................................................................................................................................CTTACACCGAG-GATCAGTT........................................................................................1911.001010000
..........................................................................................................................................................................................................................................................................................................................................................................TACACCGAG-GATCAGTTGGCT....................................................................................2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................TACACCGAG-GATCAGTTGGCTG...................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................CAGCAACGAT-GACGACGACGA.................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................GCTTACACCGAG-GATCAGTTG.......................................................................................2111.001000010
.......................................................................................................................................................................................................................................................................................................................................................................GCTTACACCGAG-GATCAGTT........................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................TACACCGAG-GATCAGTTGGCTGA..................................................................................2311.001010000
............GTTTTTCTCTTCTCC--CTCAGCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...GT--TTTGTGTTTTTCTCTTCTCC--CTCAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
...............TTTCTCTTCTCC--CTCAGCTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.........TGTGTTTTTCTCTTCTCC--CTCAGCTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................GCTTACACCGAG-GATCAGTTGGCT....................................................................................2411.001100000
................................AGCTAGCT-AAAAAAACAAATCGATATG........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
..........GTGTTTTTCTCTTCTCC--CTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................................AGCTAGCT-AAAAAAACAAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........................................................................................................................................................................................................................................................................................................................................................................ACACCGAG-GATCAGTTGGC.....................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................CGAG-GATCAGTTGGCTGGT.................................................................................1911.001000010
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGG..................................................................................2111.001100000
...GT--TTTGTGTTTTTCTCTTCTCC--CTCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
............GTTTTTCTCTTCTCC--CTCAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAGTGTGTGT---------GTGAGTGG.........2120.501100000
.................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTGC---------------------------------GAGTGCGAGT................................1870.141010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAGTGTGTGT---------GTGAGT...........1980.131100000
droBip1
CGTGT--TTTGTGTTTTTCTCTTCTCC--CTCAGCTAGCT-AAAAAAACAAATCGATATGGTAAGTG------CGT---GA--AGTAGGCAACATGACACTTTGT---A-----TATTTAATAA-------CAATTGAATGTTTACG---------------------------------------------------------------------------------------GGAGCT---CCTA-TTTCCCGCTT--------CGCCAGCAACGAT-GACGACGTCGACTCATGTTTTC--CTTTGTTTTGTTG-TT---T---------------------------TTCAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGC---------------------------------GTGTGTGTGTGTGTGTGCAT-CTGTGAG--AG--------TGSizeHit CountTotal NormTotal
No Reads
dp5
CGTGT--TTTGTGTTGT--TT---TTC--CTCAGCCAGCCTAC--CAACAAATCGATATGGTAAGTG------GG--CTGAACAGTA--------------------------------------------------A------------------------TTGATAT-CG---------TGGCCAATATATAGCCGCTACGTATCGTATGGCTTTTCCACTGAGTTTTGC-----------------------------------------------TGGGAG------CTAATGTGTTC--TTTTGTTTGGT----T------------------------------TTACAGGCAGCTTACACCGAG-GATCAGTTGGCTGGTGAGTGTTTCTCTCTCTATCTCTCTC-TCTCTCGCACTCTGAGTGGGTGTGTGTGT---------GGAAGTT--------CASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGA..................................................................................2117.0070600001000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTG...................................................................................2013.0030300000000
.........................................................................................................................................................................................................................................................................................................................................................................TTACACCGAG-GATCAGTTGGC.....................................................................................2113.0030300000000
.......................................CTAC--CAACAAATCGATATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
..............................................................................................................................................................................................................CGTATGGCTTTTCCACTGAGT.................................................................................................................................................................................................................................................2112.0020200000000
............................................................................................................................................................................................................................................................................................................................................................................CACCGAG-GATCAGTTGGCTGG..................................................................................2112.0020200000000
.............................................................................................................................................................................................................................................................................................................................................................................ACCGAG-GATCAGTTGGCTGA..................................................................................2012.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................AGCTTACACCGAG-GATCAGTTGGCTGA..................................................................................2712.0021100000000
.........................................................................................................................................................................................................................................................................................................................................................................................GTTGGCTGGTGAGTGTTTCT.......................................................................2012.0020200000000
............GTTGT--TT---TTC--CTCAGCCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.........TGTGTTGT--TT---TTC--CTCAGCCAGCCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
CGTGT--TTTGTGTTGT--TT---TTC--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................TTACACCGAG-GATCAGTTGGCTGA..................................................................................2411.0010100000000
..................................................AATCGATATGGTAAGTG------GG--CC.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................AGCTTACACCGAG-GATCAGTTGGC.....................................................................................2411.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTCTCTCTCTATCTCT...........................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................GCAGCTTACACCGAG-GATC............................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................GGCAGCTTACACCGAG-GATCA...........................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................TTACACCGAG-GATCAGTTGGCTG...................................................................................2311.0010100000000
...GT--TTTGTGTTGT--TT---TTC--CTCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................................................................................................................................................................................................................................................................................................TGTGTTC--TTTTGTTTGGT----.....................................................................................................................................................1811.0010100000000
................................AGCCAGCCTAC--CAACAAATCGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................................................TTTTGC-----------------------------------------------TGGGAG------CTAATGTG.........................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................TGAGTTTTGC-----------------------------------------------TGGGAG------CTAA.............................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................AGCTTACACCGAG-GATCAGTTGG......................................................................................2311.0010100000000
.GTGT--TTTGTGTTGT--TT---TTC--CC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................TC--CTCAGCCAGCCTAC--CAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTTTCTCTCTCTATCTCTC..........................................................2311.0010010000000
.............................................................................................................................................................................................................TCGTATGGCTTTTCCACTGAGT.................................................................................................................................................................................................................................................2211.0010100000000
......................................................................................................................................................................................................................TTTTCCACTGAGTTTTGC-----------------------------------------------TGG..........................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................TTACAGGCAGCTTACACCGA..................................................................................................2011.0010100000000
.......................................CTAC--CAACAAATCGATATG........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................C-TCTCTCGCACTCTGAGTG.....................................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................CCGAG-GATCAGTTGGCTGA..................................................................................1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................AGCTTACACCGAG-GATCA...........................................................................................1811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................CGAG-GATCAGTTGGCTGA..................................................................................1811.0010100000000
........TTGTGTTGT--TT---TTC--CTCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................CACTGAGTTTTGC-----------------------------------------------TGGGAG------C................................................................................................................................................................................2011.0010100000000
.GTGT--TTTGTGTTGT--TT---TTC--CTCAGCCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................TTACACCGAG-GATCAGTTGG......................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................CTTACACCGAG-GATCAGTTGGCTGA..................................................................................2511.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................TACACCGAG-GATCAGTTGGCTGAGT................................................................................2511.0010100000000
.............TTGT--TT---TTC--CTCAGCCAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....T--TTTGTGTTGT--TT---TTC--CTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................TCGATATGGTAAGTG------GG--CTGA...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGGCTGGTGAGTGTTTCTC......................................................................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................TACACCGAG-GATCAGTTGGC.....................................................................................2011.0010100000000
........................................TAC--CAACAAATCGATATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTGGGTGTGTGTGT---------GG...............1920.5010100000000
..............................................................................................................................................................................................................................................................................................................................................................................CCGAG-GATCAGTTGGCTGAGT................................................................................2120.5010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCTATCTCTCTC-TCTCTCGC...............................................2050.2010100000000
droPer2
-GTGT--TTTGTGTTGT--TT---TTC--CCCAGCCAGCCTAC--CAACAAATCGATATGGTAAGTA------GG--CCGAAAAGTA--------------------------------------------------A------------------------TTGATAA-CG---------TGGCCAATATATAGCCACTACGTATCGTATGGCTTTTCCACTGATTTTTGCTGGGA-----------------------------------------------------ATTAATGTGTTT--TTTTGTTTGGT----T------------------------------TTCCAGGCAGCTTACACCGAGGGATCAGTGGGCTGGTGAGT-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................CTAC--CAACAAATCGATATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............................................................GTAAGTA------GG--CCGAAAAGTA--------------------------------------------------A------------------------TTGATA............................................................................................................................................................................................................................................................................................................2611.001000001
...............................................................................................................................................................................................ATAGCCACTACGTATCGTATG................................................................................................................................................................................................................................................................2111.001010000
.......TTTGTGTTGT--TT---TTC--CCCAGCCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.......TTTGTGTTGT--TT---TTC--CCCAGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
........TTGTGTTGT--TT---TTC--CCCAGCCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
....T--TTTGTGTTGT--TT---TTC--CCCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..TGT--TTTGTGTTGT--TT---TTC--CCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droWil2
TTTTT-GTTTGTTTTTC--TT---CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTCGGTCTCTG----CCTC---TTTG-------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads

Generated: 10/20/2015 at 11:17 PM