ID:

der_25

 Coordinate:

scaffold_4845:10618728-10618783 -

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.8 -29.0 -29.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTGTTATTTTACTATATAACTTATTTATGAAGAAGCTTTAGGATTTAATTTTTCCGACAATGCGATCTAGGCGTTTCTATCGCTGAGGTAGTATTGTTTGAAAGATTAAGTTAAAGCGTAATCATCAAAATTTTAAAATGTGAATAAGTACATAAG

***********************************(((((..((((((((((((.((((((((.((((.((((.......)))).)))).)))))))).)))))))))))))))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total V107

male body		 V108

head

 M055

female body

 V060

head

 V040

embryo

 GSM1528801

follicle cells
...................................................................................TGAGGTAGTATTGTTTGAAAGA................................................... 22 0 1 5023.00 5023 4474 503 22 19 5 0
...................................................................................TGAGGTAGTATTGTTTGAAAG.................................................... 21 0 1 1087.00 1087 958 116 8 4 1 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAA.................................................. 23 1 1 725.00 725 654 65 5 1 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAT.................................................. 23 0 1 392.00 392 344 38 5 2 0 3
..................................................TTTCCGACAATGCGATCTAGG..................................................................................... 21 0 1 369.00 369 297 52 11 8 1 0
...................................................................................TGAGGTAGTATTGTTTGAAA..................................................... 20 0 1 203.00 203 171 26 2 3 1 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAAA................................................. 24 2 1 145.00 145 127 16 1 1 0 0
....................................................................................GAGGTAGTATTGTTTGAAAGA................................................... 21 0 1 133.00 133 115 18 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAA.................................................... 21 1 1 55.00 55 47 7 0 0 1 0
..................................................TTTCCGACAATGCGATCTAGGC.................................................................................... 22 0 1 51.00 51 37 8 1 3 2 0
...................................................................................TTAGGTAGTATTGTTTGAAAGA................................................... 22 1 1 48.00 48 43 5 0 0 0 0
..................................................TTTCCGACAATGCGATCTAG...................................................................................... 20 0 1 40.00 40 33 2 4 1 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGT................................................... 22 1 1 39.00 39 33 5 0 0 1 0
...................................................................................TGAGGCAGTATTGTTTGAAAGA................................................... 22 1 1 37.00 37 35 2 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAA...................................................... 19 0 1 36.00 36 30 6 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAAT................................................. 24 1 1 23.00 23 22 0 1 0 0 0
...................................................................................TGAGGGAGTATTGTTTGAAAGA................................................... 22 1 1 23.00 23 21 1 1 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAC.................................................. 23 1 1 22.00 22 19 3 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGATA................................................. 24 1 1 17.00 17 13 3 1 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAAAA................................................ 25 2 1 17.00 17 14 3 0 0 0 0
...................................................................................TGGGGTAGTATTGTTTGAAAGA................................................... 22 1 1 13.00 13 12 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGACA................................................. 24 2 1 12.00 12 10 2 0 0 0 0
...................................................................................TGAGGAAGTATTGTTTGAAAGA................................................... 22 1 1 11.00 11 9 1 0 0 1 0
...................................................................................TGAGGTAGTATTGTTTGAAAGC................................................... 22 1 1 11.00 11 11 0 0 0 0 0
....................................................................................GAGGTAGTATTGTTTGAAAGAA.................................................. 22 1 1 11.00 11 10 0 0 1 0 0
...................................................................................TTAGGTAGTATTGTTTGAAAG.................................................... 21 1 1 11.00 11 9 2 0 0 0 0
.................................................TTTTCCGACAATGCGATCTAGG..................................................................................... 22 0 1 11.00 11 7 2 2 0 0 0
....................................................................................GAGGTAGTATTGTTTGAAAG.................................................... 20 0 1 10.00 10 8 1 1 0 0 0
...................................................................................TGAGGTAGTATTGTTTAAAAGA................................................... 22 1 1 10.00 10 7 2 1 0 0 0
...................................................................................TGAGGTAGTATTGTTTTAAAGA................................................... 22 1 1 10.00 10 4 4 0 1 1 0
...................................................................................TGAGGTATTATTGTTTGAAAGA................................................... 22 1 1 10.00 10 5 5 0 0 0 0
...................................................................................TTAGGTAGTATTGTTTGAAAGAA.................................................. 23 2 1 9.00 9 7 2 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGATT................................................. 24 0 1 9.00 9 9 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAG.................................................. 23 1 1 8.00 8 8 0 0 0 0 0
...................................................................................TGAGGTAGTATTTTTTGAAAGA................................................... 22 1 1 8.00 8 6 2 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAATA................................................... 22 1 1 8.00 8 3 4 0 0 1 0
...................................................................................TGCGGTAGTATTGTTTGAAAGA................................................... 22 1 1 7.00 7 6 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAGA.................................................... 21 2 1 7.00 7 6 0 0 1 0 0
...................................................................................TGAGGGAGTATTGTTTGAAAG.................................................... 21 1 1 6.00 6 6 0 0 0 0 0
...................................................................................TGAGTTAGTATTGTTTGAAAGA................................................... 22 1 1 6.00 6 5 1 0 0 0 0
...................................................................................TGAGGCAGTATTGTTTGAAAG.................................................... 21 1 1 6.00 6 6 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGATAT................................................ 25 2 1 5.00 5 4 1 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGGCGT.................................................................................. 24 0 1 5.00 5 5 0 0 0 0 0
...................................................................................TGAGGCAGTATTGTTTGAAAGAA.................................................. 23 2 1 5.00 5 5 0 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGGA.................................................................................... 22 1 1 5.00 5 4 0 0 1 0 0
..................................................TTTCCGACAATGCGATCTAGGT.................................................................................... 22 1 1 5.00 5 4 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAGGA................................................... 22 1 1 5.00 5 5 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAAAAA............................................... 26 2 1 5.00 5 4 1 0 0 0 0
....................................................................................GAGGTAGTATTGTTTGAAAGAAA................................................. 23 2 1 4.00 4 4 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAAA................................................... 22 1 1 4.00 4 4 0 0 0 0 0
...................................................................................TGAGGAAGTATTGTTTGAAAG.................................................... 21 1 1 4.00 4 3 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGCA.................................................. 23 2 1 4.00 4 3 1 0 0 0 0
....................................................................................GAGGTAGTATTGTTTGAAAGAT.................................................. 22 0 1 4.00 4 2 1 1 0 0 0
...................................................................................GGAGGTAGTATTGTTTGAAAGA................................................... 22 1 1 4.00 4 3 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTCTGAAAGA................................................... 22 1 1 4.00 4 3 1 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGGCAT.................................................................................. 24 1 1 4.00 4 2 2 0 0 0 0
...................................................................................TGAGGTAGCATTGTTTGAAAG.................................................... 21 1 1 4.00 4 3 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGATAA................................................ 25 1 1 4.00 4 3 1 0 0 0 0
...................................................................................TGAGGTATTATTGTTTGAAAGAA.................................................. 23 2 1 4.00 4 4 0 0 0 0 0
...................................................................................TGAGGTAGCATTGTTTGAAAGA................................................... 22 1 1 4.00 4 4 0 0 0 0 0
...................................................................................TGAGGTAGTATTGCTTGAAAGA................................................... 22 1 1 3.00 3 1 2 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGTA.................................................. 23 2 1 3.00 3 3 0 0 0 0 0
...................................................................................TGAGGTAATATTGTTTGAAAGA................................................... 22 1 1 3.00 3 2 1 0 0 0 0
...................................................................................TGAGGTAGTATTCTTTGAAAGA................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...................................................................................TAAGGTAGTATTGTTTGAAAGA................................................... 22 1 1 3.00 3 1 2 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTTAAAG.................................................... 21 1 1 3.00 3 2 1 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGGCA................................................................................... 23 1 1 3.00 3 1 2 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAGGAT.................................................. 23 1 1 3.00 3 3 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGTAA................................................. 24 3 1 3.00 3 3 0 0 0 0 0
..................................................TGTCCGACAATGCGATCTAGG..................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGGT.................................................. 23 1 1 3.00 3 3 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGATAAA............................................... 26 1 1 3.00 3 3 0 0 0 0 0
...................................................................................TGAGGTGGTATTGTTTGAAAGA................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTAAAAG.................................................... 21 1 1 3.00 3 2 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTCAAAGA................................................... 22 1 1 3.00 3 2 1 0 0 0 0
...................................................................................TGAGGTAGTTTTGTTTGAAAGA................................................... 22 1 1 3.00 3 2 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGCT.................................................. 23 1 1 3.00 3 2 1 0 0 0 0
....................................................................................TGAGTAGTATTGTTTGAAAGA................................................... 21 3 2 2.50 5 5 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTAAAAGAAA................................................. 24 3 1 2.00 2 2 0 0 0 0 0
....................................................................................TAGGTAGTATTGTTTGAAAGA................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGCATTGTTTGAAAGAT.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTCCGACAATGCTATCTAGG..................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAATAA.................................................. 23 2 1 2.00 2 0 2 0 0 0 0
...................................................................................TGAGCTAGTATTGTTTGAAAGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATCGTTTGAAAGA................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGGCT................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGA....................................................... 18 0 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAT..................................................... 20 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTACTGTTTGAAAGA................................................... 22 1 1 2.00 2 1 1 0 0 0 0
...................................................................................TGAGGGAGTATTGTTTGAAAGAA.................................................. 23 2 1 2.00 2 1 1 0 0 0 0
...................................................................................TGAGGTAGAATTGTTTGAAAGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGATATA............................................... 26 2 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGTTT................................................. 24 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGGAGTATTGTTTGAAAGAAA................................................. 24 3 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGTT.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
.................................................................................TCTGAGGTAGTATTGTTTGAAAGA................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAATA................................................ 25 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTATTTGAAAGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGG................................................... 22 1 1 2.00 2 2 0 0 0 0 0
....................................................................................GAGGTAGTATTGTTTGAAA..................................................... 19 0 1 2.00 2 1 1 0 0 0 0
...................................................................................TGAGGTGGTATTGTTTGAAAGAA.................................................. 23 2 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAT.................................................... 21 1 1 2.00 2 1 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGACAGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................................................CTGAGGTAGTATTGTTTGAAAGA................................................... 23 0 1 2.00 2 1 1 0 0 0 0
...................................................TTCCGACAATGCGATCTAGG..................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAGAGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGGCG................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAAAA.................................................. 23 2 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTCGAAA..................................................... 20 1 1 2.00 2 1 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGTAT................................................. 24 2 1 2.00 2 0 2 0 0 0 0
...................................................................................TTAGGTAGTATTGTTTGAAAGAT.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGACGTAGTATTGTTTGAAAGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGTTAGTATTGTTTGAAAG.................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGATACA............................................... 26 2 1 2.00 2 2 0 0 0 0 0
...................................................................................TGATGTAGTATTGTTTGAAAGA................................................... 22 1 2 1.50 3 2 1 0 0 0 0
..................................................TTTCCGACAATGTGATCTAGGC.................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGAAGTATTGTTTGAAAGAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
....................................................................................GGGGTAGTATTGTTTTAAAGA................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGACGTAGTATTGTTTGGAAGA................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TTTCCAACAATGCGATCTAGG..................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................TCTGAGGTAGTATTGTTTGAAAG.................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAAGT................................................ 25 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TTAGGCAGTATTGTTTGAAAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGCC.................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TAGTATTGTTTGAAAGAA.................................................. 18 1 2 1.00 2 2 0 0 0 0 0
....................................................................................GCGGTAGTATTGTTTGAAAGA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAATGCGATCCAGG..................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGGCAAA................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TTAGGTAGTATTGTTTGAAAGAAA................................................. 24 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGTTAGTATTGTTTGAAAGAAA................................................. 24 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGGAGGATTGTTTGAAAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTTTTTGAACGAT.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGCTAGGATTGTTTGAAAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTACGACAATGCGATCTAGG..................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGGTATTATTGTTTGAA...................................................... 19 1 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAAGTAGTATTGTTTGAAAG.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
...................................................................................TGAGGAAGTATTGTTTGAAAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGTGGTAGTATTGTTTGAAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTTTTGTTTGAAAGAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TCAGGTAGTATTGTTTGAAAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAATAA............................................... 26 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGGTTGAAAGAT.................................................. 23 1 1 1.00 1 0 0 0 0 0 1
....................................................................................GAGGTAGTATTGTTTGAAAT.................................................... 20 1 1 1.00 1 0 0 1 0 0 0
...................................................................................TGAGGCAGTATTGTTTGAAAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGATAAC............................................... 26 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAACGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGGGGTAGTATTGTTTGAAA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGGAGTATGGTTTGAAA..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..................................................................................CTGAGGTAGTATTGTTTGAAAGAT.................................................. 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTATTTGAAAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTCGAAAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGGCGTT................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGCAAGAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGGAT................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAACA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
....................................................................................GAGGTATTATTGTTTGAAAGA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...................................................................................TGGGGTAGTATTGTTTGAAAGT................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAAGGCGATCTAGG..................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAAGTAGTATTGTTTGAAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTCGAAAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
....................................................................................GAGGTAGTATTGTTTGAAAGT................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGATAGTATTGTTTGAAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGCAGTATTGTTTGAAA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TTAGGGAGTATTGTTTGAAAGAA.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAATG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTGCGACAATGCGATCTAGG..................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTTGTATTGTTTGAAAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTCCGACAATGCGATCTAGG..................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGTTAGTATTGTTTGAACGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTTAAAA.................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTTAGAGA................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAAT................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTACTATTGTTTGAAAGAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGTTAGTATTGTTTTAAAGA................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGGTAGCATTGTTTGAAAGAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTAAAA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAATAATAA............................................... 26 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTACTATTGTTTGAAAT.................................................... 21 2 1 1.00 1 0 0 1 0 0 0
...................................................................................TGAGGTAGTATTGTTTAAAAGT................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................GAGGTAGTATTTTTTGAAAGAA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGATAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TTAGGTAGTATTGTTTGAAAA.................................................... 21 2 3 1.00 3 2 1 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGGCTT.................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAAAT................................................ 25 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAGGAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGTTAGTATTGTTTGAAA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGGGGTAGTATTGTTTGAAAG.................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.................................................TGTTCCGACAATTCGCTCTAGG..................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAATGCGATATAGG..................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTCAAAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAGA................................................. 24 2 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAT...................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGGCAATGCGATCTAGGC.................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAATGCGATCTAT...................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGAATTGTTTGAAA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TTAGGTAGTATTGTTTGAAAGAAAA................................................ 25 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGATAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGGATTGTTTGAAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGCAGTATTGTTTGAAAGAAAAA............................................... 26 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGGAAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TTCCCGACAATGCGATCTAGG..................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................TAGGTAGTATTGTTTGAAAG.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TTAGGAGGTATTGTTTGAAAGA................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...................................................................................TCAGGTAGTATTGTTTGAAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGGAGTATTGTTTGAAAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTGGAAAGAT.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGCC.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................CGAGGTAGTATTGTTTGAAAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGTAAA................................................ 25 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGGTTGAAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TTAGGTAGTATTGTTTGAAAGT................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TTAGGGAGTATTGTTTGAAAGAT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTTGTATTGTTTGAAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTTTTTGAAAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGGGGTAGTATTGTTTGAAAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGACGTAGTATTGTTTGAAAGT................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..................................................TTTCCGCCAATGCGATCTAGG..................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...................................................................................TTAGGTATTATTGTTTGAAAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTCGAAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................CTGAGGTAGTATTGTTTGAAAGAA.................................................. 24 1 1 1.00 1 0 1 0 0 0 0
...................................................................................TGCGGTAGTATTGTTTGAAAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTCTGAAAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTTTTTGAAAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TGTCCGACAATGCGATCTAG...................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................GTAGTATTGTTTGAAAGA................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAATGCGCTCTAGGC.................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...................................................................................TGCGGTAGTATTGTTTGAAAGAC.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGTTAGTATTGTTTGAAAGAAT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGATTGAT.............................................. 27 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGCAGCATTGTTTGAAAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAAGAAAAAA.............................................. 27 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAATATTGTTTGAAAGATAA................................................ 25 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGAAGTATTGTTTGGAAGAA.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAGA..................................................... 20 1 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGGTAGTATTGTTGAAAA..................................................... 20 2 1 1.00 1 0 1 0 0 0 0
...................................................................................TGAGGTAGTAGTATTTGAAAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTGGAAAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAATGCGATCTAGAC.................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTACTGTTTGAAA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGCAGTATTGTTTGAAAGAC.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...................................................................................TTAGGTAGTATTGTTTGAAA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTCCGACAATTCGATCTAGG..................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGTAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGCTAGTATTGTTTGAAAGAAA................................................. 24 3 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTGAAACAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGTTAGTATTGTTTGAAAGAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TGAGGTACTATTGTTTGAAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TGACGTAGTATTGTTTGACAGC................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................TTTCTGACAATGCGATCTAGG..................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0
...................................................................................TGAGGTAGTATTGTTGAAAG..................................................... 20 3 4 0.50 2 2 0 0 0 0 0
...................................................................................CGATGTAGTATTGTTTGAAAGA................................................... 22 2 2 0.50 1 1 0 0 0 0 0
......................................................................................TGTAGTATTGTTTGAAAGA................................................... 19 1 2 0.50 1 0 1 0 0 0 0
.................................................TTTTCAGACAATGCGATCTAGG..................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
...................................................................................TGAGGTAGTATAGTTTGAAAGA................................................... 22 1 2 0.50 1 1 0 0 0 0 0
...................................................................................TGCGGTATTATTGTTTGAAAGA................................................... 22 2 2 0.50 1 0 1 0 0 0 0
...................................................................................TGAGGTAGTATTTTTTGAA...................................................... 19 1 2 0.50 1 0 0 0 0 1 0
....................................................................................GATGTAGTATTGTTTGAAAGA................................................... 21 1 2 0.50 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTTTTTGAAAGT................................................... 22 2 2 0.50 1 1 0 0 0 0 0
...................................................................................TGAGGCAGTATTGTTTGAAAGAAA................................................. 24 3 2 0.50 1 1 0 0 0 0 0
...................................................................................TGAGGTAGTATTGTTTAAAG..................................................... 20 2 2 0.50 1 0 0 1 0 0 0
...................................................................................CGAGGCAGTATTGTTTGAACG.................................................... 21 3 3 0.33 1 0 0 0 1 0 0
..................................................................CTAGGAGTTCCTATCGCTGT...................................................................... 20 3 4 0.25 1 0 0 0 1 0 0
....................................................................................TCTGTAGTATTGTTTGAAAGAT.................................................. 22 3 7 0.14 1 1 0 0 0 0 0
....................................................................................TGAGTAGTATTGTTTGAAAG.................................................... 20 3 13 0.08 1 1 0 0 0 0 0
..........................................................................TTCTATCGCTCAGTTGGTAT.............................................................. 20 3 17 0.06 1 0 0 0 0 1 0

Anti-sense strand reads

GACAATAAAATGATATATTGAATAAATACTTCTTCGAAATCCTAAATTAAAAAGGCTGTTACGCTAGATCCGCAAAGATAGCGACTCCATCATAACAAACTTTCTAATTCAATTTCGCATTAGTAGTTTTAAAATTTTACACTTATTCATGTATTC

************************************(((((..((((((((((((.((((((((.((((.((((.......)))).)))).)))))))).)))))))))))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V108

head
....................................................................................................TATGTAATTCAATTTGGCAT.................................... 20 3 12 0.08 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4845:10618678-10618833 - der_25 confident CT--GTT------------ATTTTACT--------------------A--------------TATAACTTATTTA-------------------------------------------------TG----AAGAAG-----------------------------------------------------------------------------------------CTTTAGGATTTAATTTTTCCGACAATGCGATCTAGGCGTTTCTATCGCTGAGGTAGTATTGTTTGAAAGATT------------AAGTTAAAGCGT----------AATCATC---AAAATTTT-----AAAATG-------------------TGAATAAGTACATAAG
droYak3 2R:12724091-12724238 + dya_34 confident CT--C--------TTTGTTATTCTGCA--------------------A--------------TG-GATTTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAGGATTTATTTTTTCGGACAATTCAATCTGGGCGTTGCTTTCGCTGAGGTAGTATTGTTTGGAAGACT------------AAGTTAACGAGC----------ATTCATC---TCATTTTT-----GAAAT----------------------TTTGTGTTCATGAG
droSec2 scaffold_1:14026261-14026315 - CT--T--------TTTGCTATTCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCTAACGAGC----------ATTC---CTT------------------------------AAAAT----ACATATGTACATAAG
droSim2 2r:17041526-17041582 - AAAATTTATTCTTTTTGCTATTCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCTAATGAGC----------ATTC---CTT------------------------------AA------------AATACATATG
dm3 chr2R:16472056-16472124 - CT--G--------TTTGCTATTATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTCACGAGCTAAGCTAACGATTC---ATT------------------------------AAAATATGTACATACATATTTAAG
droEug1 scf7180000409474:1489501-1489655 + AT--ATT--------G--------------------AAAGTATGATTA--------TTAAAATAATATTTATTTA-------------------------------------------------CATTTAAAGCACTTT-----------------------------------------------------------------------------------------------CGAATTTTTAAGATAACTCAAT--GGGTGT--ACATTTTTAAATAATTATTGTTCGA-GCGTTGAGTTATTTTAAGAATTAATGTGT----------AAGT---CGC------------------------------A----------ATAAGTGAAAATG
droTak1 scf7180000415401:100655-100895 - CG--TTTATTACTCTTGAT-------AATTCTGTAAAAGAAATTAAAA--------------CATCTTTTATTGA-------------------------------------------TTTATACAGAGAAATAAGTTTAAGTGAAT----------------------TCGCCAAAAATGGTTAAAGCTAAAAAAGTGCGTGTTTAAGTTCCTATCGGAATCAGTACTTTTATTTGCTTTTCTGGATTATTTAACAAAGGTATTTTGGAAGCCTAAGTTAAGTTTTCCAGAAAAGT------------AATATAAAGTTA----------ATTCATC---AA-----------------------------------------AAATAATTATT
droEle1 scf7180000491201:736802-736956 - TT--GTT--------A--------------------AAAAATTCATTA--------------CAAGCGTTATGTA-------------------------------------------------TAATAAAAAAAATTTAAGAACATGAATTTTGCAAGCAAATTATGTGTGCCAATAAC--------------------------------------------------------------------------------------------------------GGTTAAA-AAAATGAAGCATTTCAAGAATT--------------------TAAT---TTTTTTATAACTTGTGCTA-------------------TAAAGAAACACGTAGA
droRho1 scf7180000780104:82895-83097 - CT------------TAGTCATTGTACAAGCTTGTGAAAGGGACA-TAACCTCAAAAT-----TG-AAGTAATAAGATATATTATTTATTTGTTAGTATATTTTATTTACAGCGTCCCTTTTATCCAGATAAAAAA---TAATTTGGT----------------------TTGTCAAAGGGTAATAAACTTCAAGAAC---------------------------------------------------------------------------------------CGTTC----------------------------------------------------AAAAATAT-----AAAATCTGAAGAAATTTAA-AT---TGAAAGTTATTATAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
CT--GTT------------ATTTTACT--------------------A--------------TATAACTTATTTA-------------------------------------------------TG----AAGAAG-----------------------------------------------------------------------------------------CTTTAGGATTTAATTTTTCCGACAATGCGATCTAGGCGTTTCTATCGCTGAGGTAGTATTGTTTGAAAGATT------------AAGTTAAAGCGT----------AATCATC---AAAATTTT-----AAAATG-------------------TGAATAAGTACATAAGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGA....................................................................................................2215023.00502322019544745030
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAG.....................................................................................................2111087.00108780419581160
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGAA...................................................................................................231725.007255010654650
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGAT...................................................................................................231392.003925020344383
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGG......................................................................................................................................211369.0036911081297520
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAA......................................................................................................201203.002032031171260
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGAAA------------......................................................................................241145.001451010127160
..................................................................................................................................................................................................................................................................................GAGGTAGTATTGTTTGAAAGA....................................................................................................211133.001330000115180
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAA.....................................................................................................21155.005500014770
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGGC.....................................................................................................................................22151.005110323780
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAG.......................................................................................................................................20140.004040103320
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGT....................................................................................................22139.003900013350
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAA.......................................................................................................19136.003600003060
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGAC...................................................................................................23122.002200001930
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGATA------------......................................................................................24117.001710001330
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGACA------------......................................................................................24112.001200001020
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGC....................................................................................................22111.001100001100
..................................................................................................................................................................................................................................................................................GAGGTAGTATTGTTTGAAAGAA...................................................................................................22111.001100101000
...............................................................................................................................................................................................................................................TTTTCCGACAATGCGATCTAGG......................................................................................................................................22111.00112000720
..................................................................................................................................................................................................................................................................................GAGGTAGTATTGTTTGAAAG.....................................................................................................20110.00101000810
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGATT------------......................................................................................2419.0090000900
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGAG...................................................................................................2318.0080000800
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAGA.....................................................................................................2117.0070010600
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGATA------------T.....................................................................................2515.0050000410
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGGCGT...................................................................................................................................2415.0050000500
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGGA.....................................................................................................................................2215.0050010400
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGGT.....................................................................................................................................2215.0050000410
..................................................................................................................................................................................................................................................................................GAGGTAGTATTGTTTGAAAGAAA------------......................................................................................2314.0040000400
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGCA...................................................................................................2314.0040000310
..................................................................................................................................................................................................................................................................................GAGGTAGTATTGTTTGAAAGAT...................................................................................................2214.0041000210
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGTA...................................................................................................2313.0030000300
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGGCA....................................................................................................................................2313.0030000120
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGTAA------------......................................................................................2413.0030000300
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGGCT....................................................................................................................................2312.0020000200
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGA........................................................................................................1812.0020000200
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAT......................................................................................................2012.0020000200
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGG....................................................................................................2212.0020000200
..................................................................................................................................................................................................................................................................................GAGGTAGTATTGTTTGAAA......................................................................................................1912.0020000110
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAT.....................................................................................................2112.0020000110
................................................................................................................................................................................................................................................................................CTGAGGTAGTATTGTTTGAAAGA....................................................................................................2312.0020000110
.................................................................................................................................................................................................................................................TTCCGACAATGCGATCTAGG......................................................................................................................................2012.0020000020
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGGCG....................................................................................................................................2312.0020000110
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGAAG------------T.....................................................................................2511.0010000100
......................................................................................................................................................................................................................................................................................TAGTATTGTTTGAAAGAA...................................................................................................1821.0020000200
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGGCAAA..................................................................................................................................2511.0010000100
..................................................................................................................................................................................................................................................................................GAGGTAGTATTGTTTGAAAT.....................................................................................................2011.0011000000
................................................................................................................................................................................................................................................................................CTGAGGTAGTATTGTTTGAAAGAT...................................................................................................2411.0010000100
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGGCGTT..................................................................................................................................2511.0010000100
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAGGAT....................................................................................................................................2311.0010000100
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAC.....................................................................................................2111.0010000100
..................................................................................................................................................................................................................................................................................GAGGTAGTATTGTTTGAAAGT....................................................................................................2111.0010000100
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAAT....................................................................................................2211.0010000100
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGAAA------------T.....................................................................................2511.0010000100
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGAGA------------......................................................................................2411.0010000010
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAT.......................................................................................................1911.0010000100
................................................................................................................................................................................................................................................TTTCCGACAATGCGATCTAT.......................................................................................................................................2011.0010000100
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGAAAGCC...................................................................................................2311.0010000100
................................................................................................................................................................................................................................................................................CTGAGGTAGTATTGTTTGAAAGAA...................................................................................................2411.0010000010
.....................................................................................................................................................................................................................................................................................GTAGTATTGTTTGAAAGA....................................................................................................1811.0010000100
droYak3
CT--C--------TTTGTTATTCTGCA--------------------A--------------TG-GATTTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAGGATTTATTTTTTCGGACAATTCAATCTGGGCGTTGCTTTCGCTGAGGTAGTATTGTTTGGAAGACT------------AAGTTAACGAGC----------ATTCATC---TCATTTTT-----GAAAT----------------------TTTGTGTTCATGAGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAG.....................................................................................................211348.003481614122023000020
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGA....................................................................................................221333.003332313258002630010
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGC.....................................................................................................................................22181.008129819810160000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGAT...................................................................................................23153.0053821000420000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAA......................................................................................................20151.0051101000490000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGCG....................................................................................................................................23143.0043169910080000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGG......................................................................................................................................21132.0032156210080000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAA.....................................................................................................21132.0032110000300000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGA.......................................................................................................19129.0029201000260000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGAA...................................................................................................23124.0024000000240000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGT.....................................................................................................................................22123.0023140100080000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGCGT...................................................................................................................................24118.0018121100040000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAT.....................................................................................................21117.0017200000150000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGCT....................................................................................................................................23115.0015130000020000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAT......................................................................................................20112.001230000090000
................................................................................................................................................................................................................................................................................CTGAGGTAGTATTGTTTGGAAGA....................................................................................................23110.001000100090000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGT....................................................................................................22110.001000100270000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGTT....................................................................................................................................2319.00970000020000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGAAA------------......................................................................................2418.00800000060020
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGT.......................................................................................................1917.00700000070000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGA.....................................................................................................................................2215.00500000050000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGTA...................................................................................................2315.00520000030000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGG.......................................................................................................................................2014.00421000010000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATC..........................................................................................................................................1714.00400000001030
................................................................................................................................................................................................................................................................................CTGAGGTAGTATTGTTTGGA.......................................................................................................2014.00400000040000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGCGG...................................................................................................................................2413.00330000000000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGCGC...................................................................................................................................2413.00310200000000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGCGTTT.................................................................................................................................2613.00301000010010
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGCC....................................................................................................................................2313.00330000000000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGTT...................................................................................................2313.00300000030000
................................................................................................................................................................................................................................................................................CTGAGGTAGTATTGTTTGGAA......................................................................................................2113.00300000030000
................................................................................................................................................................................................................................................................................CTGAGGTAGTATTGTTTGGAAG.....................................................................................................2213.00301100010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGATT.....................................................................................................2112.00200000020000
..................................................................................................................................................................................................................................................................................GAGGTAGTATTGTTTGGAAGA....................................................................................................2112.00202000000000
................................................................................................................................................................................................................................................................................CTGAGGTAGTATTGTTTGGAAA.....................................................................................................2212.00200000020000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGCGTT..................................................................................................................................2512.00220000000000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGTT......................................................................................................2012.00200000020000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGG....................................................................................................2212.00220000000000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGTC....................................................................................................................................2311.00110000000000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGCA...................................................................................................2311.00100000010000
.................................................................................................................................................................................................................................................TTCGGACAATTCAATCTGGGCG....................................................................................................................................2211.00101000000000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCT.........................................................................................................................................1811.00100000000010
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAATT...................................................................................................2311.00100000010000
..................................................................................................................................................................................................................................................TCGGACAATTCAATCTGGGC.....................................................................................................................................2011.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAAT....................................................................................................2211.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGATA.....................................................................................................2111.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGATA------------T.....................................................................................2511.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGAC...................................................................................................2311.00100000010000
.................................................................................................................................................................................................................................................TTCGGACAATTCAATCTGGGCGT...................................................................................................................................2311.00101000000000
................................................................................................................................................................................................................................................TTTCGGACAATTCAATCTGGGCGA...................................................................................................................................2411.00110000000000
..................................................................................................................................................................................................................................................................................GAGGTAGTATTGTTTGGAAG.....................................................................................................2011.00100100000000
................................................................................................................................................................................................................................................................................CTGAGGTAGTATTGTTTGGAAGAA...................................................................................................2411.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGA........................................................................................................1811.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGT........................................................................................................1811.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGAAG------------......................................................................................2411.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAGC....................................................................................................2211.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAATT....................................................................................................2211.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGC........................................................................................................1811.00100000010000
.................................................................................................................................................................................................................................................TTCGGACAATTCAATCTGGGC.....................................................................................................................................2111.00101000000000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGAAATA...................................................................................................2311.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGG........................................................................................................1811.00100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGATAT....................................................................................................2220.50100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGTTT.....................................................................................................2150.40200000020000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGTT.......................................................................................................1930.33100000010000
.................................................................................................................................................................................................................................................................................TGAGGTAGTATTGTTTGGTTA.....................................................................................................2140.25100000010000
droSec2
CT--T--------TTTGCTATTCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCTAACGAGC----------ATTC---CTT------------------------------AAAAT----ACATATGTACATAAGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droSim2
AAAATTTATTCTTTTTGCTATTCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCTAATGAGC----------ATTC---CTT------------------------------AA------------AATACATATGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
......TATTCTTTTTGCTATTCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG...................................................................................2311.00100000001000000000
dm3
CT--G--------TTTGCTATTATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTCACGAGCTAAGCTAACGATTC---ATT------------------------------AAAATATGTACATACATATTTAAGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
No Reads
droEug1
AT--ATT--------G--------------------AAAGTATGATTA--------TTAAAATAATATTTATTTA-------------------------------------------------CATTTAAAGCACTTT-----------------------------------------------------------------------------------------------CGAATTTTTAAGATAACTCAAT--GGGTGT--ACATTTTTAAATAATTATTGTTCGA-GCGTTGAGTTATTTTAAGAATTAATGTGT----------AAGT---CGC------------------------------A----------ATAAGTGAAAATGSizeHit CountTotal NormTotal
No Reads
droTak1
CG--TTTATTACTCTTGAT-------AATTCTGTAAAAGAAATTAAAA--------------CATCTTTTATTGA-------------------------------------------TTTATACAGAGAAATAAGTTTAAGTGAAT----------------------TCGCCAAAAATGGTTAAAGCTAAAAAAGTGCGTGTTTAAGTTCCTATCGGAATCAGTACTTTTATTTGCTTTTCTGGATTATTTAACAAAGGTATTTTGGAAGCCTAAGTTAAGTTTTCCAGAAAAGT------------AATATAAAGTTA----------ATTCATC---AA-----------------------------------------AAATAATTATTSizeHit CountTotal NormTotal
No Reads
droEle1
TT--GTT--------A--------------------AAAAATTCATTA--------------CAAGCGTTATGTA-------------------------------------------------TAATAAAAAAAATTTAAGAACATGAATTTTGCAAGCAAATTATGTGTGCCAATAAC--------------------------------------------------------------------------------------------------------GGTTAAA-AAAATGAAGCATTTCAAGAATT--------------------TAAT---TTTTTTATAACTTGTGCTA-------------------TAAAGAAACACGTAGASizeHit CountTotal NormTotal
No Reads
droRho1
CT------------TAGTCATTGTACAAGCTTGTGAAAGGGACA-TAACCTCAAAAT-----TG-AAGTAATAAGATATATTATTTATTTGTTAGTATATTTTATTTACAGCGTCCCTTTTATCCAGATAAAAAA---TAATTTGGT----------------------TTGTCAAAGGGTAATAAACTTCAAGAAC---------------------------------------------------------------------------------------CGTTC----------------------------------------------------AAAAATAT-----AAAATCTGAAGAAATTTAA-AT---TGAAAGTTATTATAAGSizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:40 PM