ID:

der_246

 Coordinate:

scaffold_4820:7744432-7744597 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.0

Flybase annnotation

intron [Dere\GG11295-in]; utr5 [utr5_plus_11997]; CDS [Dere\GG11295-cds]; CDS [Dere\GG11295-cds]

No Repeatable elements found

Sense Strand Reads

GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTTTAAAGCTTCCCATCGCCAGCAATTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAATATCCCTTTCCCCCTTTCCCAACACACTTGTATCCCACTTCTCGCGCGACTCTTGGACTTGTGGCTGCTTCACTGGCTGGACTATTTAGATATCTTCTTCAACATCACCCTGAGGCGGAAGACTCTCTTCTACACGGTC

***********************************.............((((((((((.(((((((((...........((((..........)))))))))))))..))))))))))...............************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V108

head

 M057

embryo

 M055

female body

 V060

head

 V040

embryo

 V107

male body
...............................................................................................GAAAGCTCTACCCAAACTCATCC.................................................................................................................................................... 23 0 1 950.00 950 489 212 200 19 21 9
...............................................................................................GAAAGCTCTACCCAAACTCATCCC................................................................................................................................................... 24 0 1 798.00 798 519 130 88 26 25 10
...............................................................................................GAAAGCTCTACCCAAACTCATC..................................................................................................................................................... 22 0 1 385.00 385 202 106 58 12 3 4
...............................................................................................GAAAGCTCTACCCAAACTCAT...................................................................................................................................................... 21 0 1 51.00 51 37 1 11 2 0 0
................................................................................................AAAGCTCTACCCAAACTCATCC.................................................................................................................................................... 22 0 1 29.00 29 11 3 14 1 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCCT................................................................................................................................................... 24 1 1 19.00 19 11 2 0 3 3 0
...............................................................................................GAAAGCTCTACCCAAACTCATCCA................................................................................................................................................... 24 1 1 18.00 18 13 2 3 0 0 0
................................................................................................AAAGCTCTACCCAAACTCATCCC................................................................................................................................................... 23 0 1 17.00 17 11 0 4 2 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCT.................................................................................................................................................... 23 1 1 16.00 16 10 1 3 0 2 0
...............................................................................................GGAAGCTCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 15.00 15 0 14 0 1 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCCCC.................................................................................................................................................. 25 0 1 14.00 14 4 3 7 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCA....................................................................................................................................................... 20 0 1 12.00 12 6 0 4 0 1 1
...............................................................................................GAAAGCTCTACCCAAACTCATCA.................................................................................................................................................... 23 1 1 11.00 11 10 0 1 0 0 0
...............................................................................................GAAAGCTCTACCAAAACTCATCC.................................................................................................................................................... 23 1 1 11.00 11 10 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCAC................................................................................................................................................... 24 1 1 9.00 9 9 0 0 0 0 0
...............................................................................................GGAAGCTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 8.00 8 0 8 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTAATCCC................................................................................................................................................... 24 1 1 7.00 7 7 0 0 0 0 0
................................................................................................AAAGCTCTACCCAAACTCATC..................................................................................................................................................... 21 0 1 7.00 7 3 1 3 0 0 0
...............................................................................................GAAATCTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 6.00 6 5 0 0 0 1 0
...............................................................................................GAAAGCTCTACCAAAACTCATCCC................................................................................................................................................... 24 1 1 6.00 6 5 1 0 0 0 0
...............................................................................................GAAAGCTCTACACAAACTCATCCC................................................................................................................................................... 24 1 1 6.00 6 6 0 0 0 0 0
...............................................................................................GAATGCTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 5.00 5 0 5 0 0 0 0
...............................................................................................GAATGCTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 5.00 5 0 5 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATAC.................................................................................................................................................... 23 1 1 5.00 5 4 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCTGT..................................................................................................................................................... 22 3 1 5.00 5 4 0 1 0 0 0
...............................................................................................GAATGCTCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 5.00 5 0 5 0 0 0 0
...............................................................................................GAAAGCTATACCCAAACTCATCC.................................................................................................................................................... 23 1 1 5.00 5 1 2 2 0 0 0
...............................................................................................GGAAGCTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 4.00 4 0 4 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATT..................................................................................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
...............................................................................................GTAAGCTCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 4.00 4 2 2 0 0 0 0
...............................................................................................GAAAGCTCTACACAAACTCATCC.................................................................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
...............................................................................................AAAAGCTCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 4.00 4 1 1 2 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCCCA.................................................................................................................................................. 25 1 1 4.00 4 3 0 1 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCG.................................................................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..................................................GTGAGTTTAGTGGAGTTTA..................................................................................................................................................................................................... 19 0 1 4.00 4 0 0 0 0 0 4
...............................................................................................GAAAGCTATACCCAAACTCATCCC................................................................................................................................................... 24 1 1 4.00 4 3 0 1 0 0 0
...............................................................................................GAAAGCTCTACTCAAACTCATCC.................................................................................................................................................... 23 1 1 4.00 4 3 0 1 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTC........................................................................................................................................................ 19 0 1 3.00 3 2 0 1 0 0 0
...............................................................................................GAAAGCTCTACCAAAACTCATC..................................................................................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAAATCATCC.................................................................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..............................................................................................CGAAAGCTCTACCCAAACTCATCC.................................................................................................................................................... 24 0 1 3.00 3 2 0 1 0 0 0
...............................................................................................GAAAGCTCTACCCACACTCATCCC................................................................................................................................................... 24 1 1 3.00 3 1 0 0 2 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATA..................................................................................................................................................... 22 1 1 3.00 3 1 1 1 0 0 0
..................................................GTGAGTTTAGTGGAGTTTAAAGCTTCC............................................................................................................................................................................................. 27 0 1 3.00 3 3 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCACCCC................................................................................................................................................... 24 1 1 3.00 3 2 0 0 0 1 0
...............................................................................................GAAATCTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
................................................................................................AAAGCTCTACCCAAACTCATCCCC.................................................................................................................................................. 24 0 1 2.00 2 0 0 2 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCAT................................................................................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...............................................................................................GAAAGCTCTGCCCAAACTCATCC.................................................................................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCAGCCC................................................................................................................................................... 24 1 1 2.00 2 0 0 2 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTAATCC.................................................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................GAAAGCTTTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................GAAAGCTCCACCCAAACTCATC..................................................................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAAATCATC..................................................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCCTCC.................................................................................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0
...............................................................................................GAACGCTCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 2.00 2 0 0 2 0 0 0
...............................................................................................GTAAGCTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0
...............................................................................................GAAAGATCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................AAAAGCTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................GAAATCTCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAACCTCATCCC................................................................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATTC.................................................................................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
..................................................GTGAGTTTAGTGGAGTTT...................................................................................................................................................................................................... 18 0 1 2.00 2 1 0 0 0 0 1
...............................................................................................GAAAGCTATACCCAAACTCATC..................................................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTTTAGTGGAGTTTAAAGCTT............................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCTC................................................................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................GAAAGTTCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 2.00 2 0 0 1 1 0 0
...............................................................................................GAAAGCTCTACCCAAGCTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCAGCC.................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................TCGAAAGCTCTACCCAAACTCATCCT................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGCTCGACCCAAACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
...............................................................................................GAAGGCTCTACCCAAACTCATAC.................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................GATCGAAAGCTCTACCCAAACTCATCCC................................................................................................................................................... 28 3 1 1.00 1 0 1 0 0 0 0
................................................................................................AGAGCTCTACCCAAACTCATCC.................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................CGAAAGCTCTACACAAACTCATCC.................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAACCTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
................................................................................................AAAGCTCTACCCAAACTAATCC.................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................CGAAAGCTCTACCCAAACTCATCCC................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTACTCCTC.................................................................................................................................................. 25 3 1 1.00 1 0 0 0 0 1 0
...............................................................................................GAAAGCTCTACCCAAACTCAG...................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTCTACCCACACTAATCCC................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAGCTCATCCA................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAATCTCATCC.................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................CAAAGCTATACCCAAACTCATC..................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAATGCTCTACCCAAACTCATCCA................................................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAAATCAT...................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GATAGCTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GATAGCTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAAATCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACACAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCTTCC.................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GTAAGCTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................AGCTCTACCCAAACTCATCC.................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATACT................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCCTT.................................................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCATACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTATACCCAAACTCAT...................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCTTCCC................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACACATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCCAACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTAACCAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTCCCCACACTCTTCCCC.................................................................................................................................................. 25 3 1 1.00 1 0 0 0 1 0 0
...............................................................................................GAAAGCTCTACCCACACCCAACCC................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTTTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTCTACCCAAACCCATCC.................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GACAGCTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCCTCCC................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0
...............................................................................................GAACGCTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTCTACCCTAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTAATCCA................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACT......................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAAAGCTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCACCCTCATCT.................................................................................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0
...............................................................................................GAAAACTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGATCTACCCAAACTCAT...................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................GAAGCTCTACCCAAACTCATCCC................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTATACCCAAACTCATA..................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGCTCTACACAAAATCATCCC................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCGAACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCCACCCAAACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................CAAAGCTCTACCCAACCTCATCCC................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
..................................................GTGAGTTTAGTGGAGTTTAAAGCTTC.............................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0
...............................................................................................GAAGGCTCTACCCAAACTCGTC..................................................................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0
...............................................................................................TAAAGCTCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAACCTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTATACCAAAACTCATC..................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................TAAAGCTCTACCCAAACTCATCCG................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCACACTCATC..................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAACTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGCTCTAACCAAACTCATCT.................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCAAAACTAATCCC................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAATCTTATC..................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAACGCTCTACCCATACTCATCCT................................................................................................................................................... 24 3 1 1.00 1 0 0 0 1 0 0
...............................................................................................GAAAGCTCTACCCAAGCTCATCC.................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTTTAGTGGAGTTTAAA................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATTCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTATACCCAAACTCATCG.................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................CGAAAGCTCTACCCAAACTCAT...................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................CAAAGCTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................................................AAAATTTCCCTTTCCCCCCCTC......................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0
...............................................................................................GAAAGCTCTACCCAAACTCTTC..................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTCTAGCCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCACAT.................................................................................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0
...............................................................................................GAAAGTTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTAACCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
................................................................................................AAAGATCTACCCAAACTCATCC.................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAATCTCTACCCAAACTCACCC.................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGTTCTACCCAAACTCATCT.................................................................................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTCCACCCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCGAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GACAGCTCTACTCAAACTCATCC.................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................ACGAAAGCTCTACCCAAACTCATCC.................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTATACCCAAACTCATAC.................................................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAAGTCAGC..................................................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCCTCCCC.................................................................................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0
...............................................................................................GAAAGCTCTACCCAAACTCGTC..................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCGC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATGCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAAAGCTCTACCCAAACTCATCCA................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
................................................................................................AAAGCTCTACCCAAACTCA....................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTCTACCAAAACTCA....................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAGGCTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACTCAAACTCATCA.................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GGAAGCTCTACCCAAACTCATCCCC.................................................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................TAAATCTCTACCCAAACTCATCCC................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
...............................................................................................GAAGGCTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................AAAAGCTCTACCCAAACTCATCCCC.................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTATCCAAACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGTTCTACCCAAACTCATC..................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GACAGCTCTACCCAAACTCATCCA................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
.................................................................................................AAGCTCTACCCAAACTCATCCC................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGCTCTACTCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCAGC..................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGATCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GACAGCTCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATCTA................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................TGAAGCTCTAACCAAACTCATCCC................................................................................................................................................... 24 3 1 1.00 1 0 0 0 0 1 0
...............................................................................................GAAAGCGCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAAAGCTCTACCCAAACTCATACC................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GGAAGCTCTACCAAAACTCATC..................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTTTAGTGGAGTTTAAAG.................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................CGAAAGCTTTACCCAAACTCATCC.................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................GAACGCTCTACCCAAACTCATCCC................................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................GAAAGATCTACCCAAACTCATCCT................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
...............................................................................................GACAGCTCTACCCAAACTCATCA.................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................CGAAAGCTCTACCCAAACTCATC..................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................GCAAGCTCTACCCAAACTCATCC.................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GCAAGCTCTACCCACACCCATCC.................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 1 0
...............................................................................................GAAAGCTCTAACCCAACTCATCCC................................................................................................................................................... 24 2 2 0.50 1 0 0 0 0 1 0
...............................................................................................GAAAGCTCTACCCAAACTCGGT..................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0
........................................................................................................................................................................................................................CTATCTTCTTCAACACGACC.............................. 20 3 3 0.33 1 0 0 0 0 1 0
.............................................................................................................................................................TATCCCACTTCTGGCACCA.......................................................................................... 19 3 20 0.10 2 0 0 1 1 0 0
........................................................................................................................................................................................................................ATGTCTTTTTGAACATCACC.............................. 20 3 10 0.10 1 0 1 0 0 0 0
..................GTTCAATCCCTGTTGTGCC..................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 1
..................................................................................................................................CCCCTTCCCCCTTCCACAACA................................................................................................................... 21 3 17 0.06 1 0 0 0 0 1 0

Anti-sense strand reads

CCGACTCGCCGTGCTCTTCATGATAGGGACGACACGGCTTGGCATAGGCCCACTCAAATCACCTCAAATTTCGAAGGGTAGCGGTCGTTAATGCGCTTTCGAGATGGGTTTGAGTAGGGGACTTTTTATAGGGAAAGGGGGAAAGGGTTGTGTGAACATAGGGTGAAGAGCGCGCTGAGAACCTGAACACCGACGAAGTGACCGACCTGATAAATCTATAGAAGAAGTTGTAGTGGGACTCCGCCTTCTGAGAGAAGATGTGCCAG

*************************************************************************************************************************************.............((((((((((.(((((((((...........((((..........)))))))))))))..))))))))))...............*********************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body
..................................................................................................................................GGGAAGGGGTGAAATGGTTGTGT................................................................................................................. 23 3 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4820:7744382-7744647 - der_246 confident GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATATC-----CCTTT---CCCCCTT--TC-CC-AA----CACA------------------CTTGTATC-----CCACTTC--------------------------------------------------------TC-------GCGCG---------------------------------------------------AC-TCTTGGACTTGTGGCTGCTTCACT--GG------------------CTGGACTATT-TAGATATCTTCTTCAACATCACCCTGAGGCGGAAGACTCTCTTCTACACGGTC
droYak3 3R:26186813-26187086 - dya_1820 GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGCGCCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAAATATC-----CCTTTC-CCTCTTTT--TT-CC-AA----CACA----------------TTCTTGTATC-----CCACTTT--------------------------------------------------------TT-------TTGCG---------------------------------------------------CCTTCTTGGATGTGTGACTGCTGCAAT--GGCC----------------ATGGACTGTT-TAGATATCTTCTTCAATATCACCCTGAGGCGCAAGACTCTCTTCTACACGGTC
droSec2 scaffold_0:20650403-20650671 + dse_362 confident GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATATC-----CCTCTC-TCCCCTTT--TC-CT-CA----CACA------------------CTTGTATC-----CCACTTC--------------------------------------------------------CT-------GCGCG---------------------------------------------------ACTTCATGGATTTGTAACTGCTTCAAT--GG------------------CTGGACGGTT-TAGATATCTTCTTCAACATCACCCTGAGGCGAAAGACTCTCTTCTACACGGTT
droSim2 3r:19845277-19845545 + dsi_287 candidate-rescued GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGCGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATATC-----CCTCTC-TCCCCTTT--TC-CC-GA----CACT------------------TTTGTAAC-----CCACTTC--------------------------------------------------------CT-------GCACG---------------------------------------------------ACTTCATGGATTTGTAACTGCTTCAAT--GG------------------CTGGACGGTT-TAGATATCTTCTTCAATATCACCCTGAGGCGAAAGACTCTCTTCTACACGGTT
dm3 chr3R:20314284-20314552 + dme-mir-1017 Known_mirbase GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCGAAAA-TGATC-----CCTTTC-TCCCCTTT--TC-CC-AA----CACA------------------TTTGTATC-----CCACTTC--------------------------------------------------------CT-------GCGCG---------------------------------------------------TCTTCGTGGATTTGTAACTGCTTCAAT--GG------------------CTGGACGGTT-TAGATATCTTCTTCAACATCACCCTGAGGCGAAAGACTCTCTTCTACACGGTT
droEug1 scf7180000409881:35405-35667 + AGCCGAGCGGCACGAGAAGTACTATCCGTGCTGTGCTGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCT-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAACA------TTTTCCTAC--CC--T-C----TC--C-TCC---AA------------------C-TTTGCTTT----ACTATTCC--------------------------------------------------------TA-------CCGCG---------------------------------------------------ACTTTTTGGATTTTTGACTGGTTAAAT--GT------------------CTGGCCTGTA-CAGACATCTTCTTTAACATCACCCTGAGAAGGAAGACTCTTTTCTACACGGTT
droBia1 scf7180000302136:685714-685976 + GGCCGAGCGGCACGAGAAGTACTATCCCTGCTGTGCGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGC---CC-------ATCGCCTGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA------ATTGTCCTC--CC--T---C--TC-C-CCC-CAAAACT------------------TTTACCAT-----CTTTTTT--------------------------------------------------------CA-------CCGCA---------------------------------------------------ACTTCTTGGATTTTTGACTGGTTTGAT--GG------------------CTGGCCTGTT-CAGATATCTTCTTTAACATCACGCTGAGGCGGAAGACCCTCTTCTACACGGTC
droTak1 scf7180000415769:2087464-2087747 - AGCCGAGCGGCACGAGAAGTACTATCCCTGCTGTGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCGGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCAAAAA-ACAT--TTTCCCTC----CCTCTTT--TC-CC--C-CAAAAA-AAATATTTATTTAT------CATATG-----CAATATC--------------------------------------------------------AT-------ACGCA---------------------------------------------------ACTTCTTGGACTTGTAACTGTTTT--T--GGCC--------------AACTGGCCTGTT-CAGATATCTTCTTCAATATCACCCTGCGGCGAAAGACGCTCTTCTACACGGTT
droEle1 scf7180000491047:474831-475100 - GGCGGAGCGGCACGAGAAGTACTATCCGTGCTGTGCGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTCAAAA------TCTCTCT------CCCCCTC--TC-CC-GT---TGA---------------------TTCTATC-----CCATTTCTCCATTTC------------------------------------------------AC-------CTGCG---------------------------------------------------ACAACTGGGATTTGTGACTGATTTAAT--GC------------------CTGACTTGCT-CAGATATCTTCTTCAATATCACCCTGAGGCGGAAGACACTCTTCTACACCGTC
droRho1 scf7180000777890:62011-62270 + GGCCGAGCGGCACGAGAAGTACTATCCGTGCTGTGCGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGACAA-----------TGACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA------TTTCTC-TCC-CT------C--TC-CC-TTT---GA---------------------TTCTGTG-----ATATTTC--------------------------------------------------------TC-------CTGCG---------------------------------------------------ATGTCTTGGATTTCTGACTGATTTAAT--GC------------------CTGACTTGTG-CAGATATCTTCTTCAATATCACCCTGAGGCGGAAGACCCTGTTCTACACTGTC
droFic1 scf7180000453912:1499617-1499876 + GGCGGAGCGGCACGAAAAATACTATCCGTGCTGCGCGGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGACAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTCAAAAAAT------ATCTA-C-CC--C--TCTTTC--C-TAC---AA------------------C-T------------CTATTTC--------------------------------------------------------TATT-----TTGCT---------------------------------------------------GCTTCCTGGATTTGTGACTGGTTTAAT--GA------------------CTGGTTTAAT-CAGATATCTTCTTCAACATCACACTTCGACGGAAGACTCTCTTCTACACTGTG
droKik1 scf7180000302387:220812-221072 + AGCGGAGCGGCACGAGAAGTACTATCCGTGCTGCGCGGAGCCCTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCCTCCA-------ATCGCCGGCAA-----------TTGCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA------TTT--CTA-C-CC----TAC--TC-CC-TG-TA-----------------------TT--TATCCC--TCGATTTC--------------------------------------------------------TC-------TGGTG---------------------------------------------------AT--------------------GTCCTCTGGCTACTGAATTGAAATGAACTGGCTTGTT-CAGATATCTTCTTCAATATCACCCTGCGGCGAAAGACTCTTTTCTACACGGTC
droAna3 scaffold_13088:356244-356496 + dan_324 candidate-rescued GGCGGAGCGGCACGAGAAGTACTATCCGTGCTGCGCCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA------CCTTTTT---------------TC--CC-CC---CA------------------TTTTCTTCCC--TTACTGTTTT------------------------------------------------------------------TGCA---CTTTGGAT--------------------TTTATGT---------GGC------------------CTG-----CT--GG------------------ATGGCTTCTT-CAGATATATTTTTCAACATCACCCTGAGGCGGAAGACGCTGTTCTACACGGTC
droBip1 scf7180000396413:412872-413128 + GGCGGAGCGGCACGAAAAGTACTATCCTTGCTGCGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCCGAAAAAAT-AC-----CTTCTT-----------TC--CC-CC---CA------------------TTTTCTTCCT--TTACTGTTTT------------------------------------------------------------------TGCT---TTTCGGAT--------------------AT----------------------------TTTGTGGCCGCTTCGAT--TA----------------------CTTGTT-CAGATATATTCTTCAACATAACCCTGAGGCGGAAGACACTCTTCTACACGGTT
dp5 2:18479332-18479595 - dps_249 candidate-rescued GGCGGAGCGTCATGAGAAGTACTATCCGTGCTGCGCCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTAACA-------ATCGCCGACAATCA------AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAA--------TTGTTTT---C-----CTC--CCC--CAC-CAA----AAATCTCCCTCA-CCC----TGTAAA-----TCAC-----------------------------------------------------------T-----------------------------------------------ATGC---------GGCTGCT----------------GCTGGTATTCGGC-----------------TTGGACTGTTCCAGATATCTTCTTCAATATAACCCTGAGGCGGAAGACTCTGTTCTACACGGTT
droPer2 scaffold_3:1202977-1203240 - dpe_342 confident GGCGGAGCGGCACGAGAAGTACTATCCGTGCTGCGCCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTTACA-------ATCGCCGACAATCA------AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAA--------TTGTTTT---C-----CTC--CCC--CAC-CAA----AAATCTCCCTCT-CCC----TGTAAA-----TCAC-----------------------------------------------------------T-----------------------------------------------ATGC---------GGCTGCT----------------GCTGGTATTCGGC-----------------TTGGACTGTTCCAGATATCTTCTTCAATATAACCCTGAGGCGGAAGACTCTGTTCTACACGGTT
droWil2 scf2_1100000004921:4383407-4383678 - dwi_32 confident AGCCGAGCGACATGAAAAATATTATCCTTGCTGTGCTGAACCATATCCAGGTGAGTTTTGTAGAGTTTTAAAGCTATAA-------ATCGCCGGTAAATAGACGTTAAAGACGCGAAAGCTCTACCCAAACTCAC-CCCGGAA-A------TTTTTTTATT--CTCTTTTT--TC-CC-AA----CAAA------------------AATAATGA-----CAATTTA--------------------------------------------------------T-----------------CTTGGAA--------------------ATTTGGT---------------------------AAACACTTTAAAT--AA------------------TTGTATATAT-TAGATATATTTTTCAATATCACACTAAGAAGGAAGACTCTCTTTTACACCGTT
droVir3 scaffold_13047:3684370-3684668 + dvi-mir-1017 Known_mirbase TGCTGAACGCCATGAGAAATATTATCCCTGCTGTGCCGAGCCGTATCCGGGTGAGTTTCGTAGAGTT-TAAAGCTCTTA--CTTTGCTCGCTGGCAC----GC-----CCACGCGAAAGCTCTACCCAAACTCAC--TATGCAAA------CCC--CCA-A-CC----CAT--AC---------------------------------------------------CCAAATCCATGCTCCT---------------TGTCTCTCTCTCTCTCTCTTTCTCTCTC-------TCTCT-------------CTCTCTCTCCACTTTTGTTTCATGC------TGCACT---C----------------GCTGGCTCTT--------------------GTTGAATGTT-CAGACATATTCTTTAATATAACGCTGCGACGGAAGACACTCTTCTACACGGTT
droMoj3 scaffold_6540:20694167-20694498 + dmo_339 candidate-rescued CGCTGAGCGCCACGAGAAGTATTATCCGTGCTGTGCCGAGCCCTATCCCGGTGAGTTTCGTAGAGTT-TAAAGCTCACA--CTTTGCTCGCCAACAA----GC-----GCACGCGAAAGCTCTACCCAAACTCAC--TATGAAAA------TCT--ATA-C-TC----CAA--AC---------------------------------------------------CCGAATCCAATCTTCGTGGATTCCATCATCGTGTCTCTCTCTCTCTCTCTCTCTCTCTC--TCTCTGTTTGTCTTTCTGGATCTCTTTCTTTCTTTTGGTATTTCATGC------TGCTCT---C----------------GCTGGCCTT--G------------------ATCAAATGTT-CAGACATCTTCTTCAACATAACGCTGAGACGAAAGACCCTCTTCTACACGGTC
droGri2 scaffold_14906:340702-341015 + dgr_80 candidate-rescued TGCTGAGCGCCATGAAAAATATTATCCCTGCTGTGCGGAACCGTATCCGGGTGAGTTTCGTAGGGTT-TAAAGCAACAAAACTTTGCTCGCCGACAC----GC-----GTACGCGAAAGCTCTACCCAAACTCAC--TATGGAAA------CCCGTATC---C-----CAA--CCC--CCC-AAA----TAATC-----------------CAAC-----CAATATCCCAATCCTGGCCTGT---------------TCGTTCTCGTGTTCTTTGCTTTTCTCTT-------CTGCT-------------------------------CTTTCTTGCCTGCTGCGAT------------T----GCTGCTTGTTT--TG------------------CTAAAATGTT-TAGACATATTCTTCAATATTACGCTGAGACGAAAGACACTCTTCTACACGGTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATATC-----CCTTT---CCCCCTT--TC-CC-AA----CACA------------------CTTGTATC-----CCACTTC--------------------------------------------------------TC-------GCGCG---------------------------------------------------AC-TCTTGGACTTGTGGCTGCTTCACT--GG------------------CTGGACTATT-TAGATATCTTCTTCAACATCACCCTGAGGCGGAAGACTCTCTTCTACACGGTCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................................GAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................231950.00950200212192194890
..................................................................................................................GAAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................241798.00798881302625105190
..................................................................................................................GAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................221385.003855810612342020
..................................................................................................................GAAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................21151.0051111200370
...................................................................................................................AAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................22129.0029143100110
..................................................................................................................GAAAGCTCTACCCAAACTCATCCT...................................................................................................................................................................................................................................................................................................................................24119.001902330110
..................................................................................................................GAAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................24118.001832000130
...................................................................................................................AAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................23117.001740200110
..................................................................................................................GAAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................23116.001631020100
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCC..................................................................................................................................................................................................................................................................................................................................25114.00147300040
..................................................................................................................GAAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................20112.00124001160
..................................................................................................................GAAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................23111.001110000100
...................................................................................................................AAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2117.0073100030
..................................................................................................................GAAAGCTCTACCCAAACTCTGT.....................................................................................................................................................................................................................................................................................................................................2215.0051000040
..................................................................................................................GAAAGCTCTACCCAAACTCATT.....................................................................................................................................................................................................................................................................................................................................2214.0040000040
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCA..................................................................................................................................................................................................................................................................................................................................2514.0041000030
..................................................................................................................GAAAGCTCTACCCAAACTCATCG....................................................................................................................................................................................................................................................................................................................................2314.0040000040
..................................................GTGAGTTTAGTGGAGTT-TA.......................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000400
..................................................................................................................GAAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................1913.0031000020
.................................................................................................................CGAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2413.0031000020
..................................................................................................................GAAAGCTCTACCCAAACTCATA.....................................................................................................................................................................................................................................................................................................................................2213.0031100010
..................................................GTGAGTTTAGTGGAGTT-TAAAGCTTCC...............................................................................................................................................................................................................................................................................................................................................................................................2713.0030000030
...................................................................................................................AAAGCTCTACCCAAACTCATCCCC..................................................................................................................................................................................................................................................................................................................................2412.0022000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCAT...................................................................................................................................................................................................................................................................................................................................2412.0020000020
..................................................GTGAGTTTAGTGGAGTT-T........................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000110
..................................................GTGAGTTTAGTGGAGTT-TAAAGCTT.................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000020
.................................................................................................................CGAAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2511.0011000000
..................................................................................................................GAAAGCTCTACCCAAACTCAG......................................................................................................................................................................................................................................................................................................................................2111.0011000000
.....................................................................................................................AGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2011.0010000010
..................................................................................................................GAAAGCTCTACCCAAACTCATCCTT..................................................................................................................................................................................................................................................................................................................................2511.0010100000
..................................................................................................................GAAAGCTCTACCCAAACT.........................................................................................................................................................................................................................................................................................................................................1811.0010000010
..................................................GTGAGTTTAGTGGAGTT-TAAAGCTTC................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000
..................................................GTGAGTTTAGTGGAGTT-TAAA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.................................................................................................................CGAAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................2211.0010000010
..................................................................................................................GAAAGCTCTACCCAAACTCACAT....................................................................................................................................................................................................................................................................................................................................2311.0010010000
...................................................................................................................AAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................1911.0011000000
....................................................................................................................AAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2211.0011000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCTA...................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................................................GTGAGTTTAGTGGAGTT-TAAAG....................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.................................................................................................................CGAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2311.0010000010
..................................................................................................................GAAAGCTCTACCCAAACTCGGT.....................................................................................................................................................................................................................................................................................................................................2220.5011000000
droYak3
GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGCGCCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAAATATC-----CCTTTC-CCTCTTTT--TT-CC-AA----CACA----------------TTCTTGTATC-----CCACTTT--------------------------------------------------------TT-------TTGCG---------------------------------------------------CCTTCTTGGATGTGTGACTGCTGCAAT--GGCC----------------ATGGACTGTT-TAGATATCTTCTTCAATATCACCCTGAGGCGCAAGACTCTCTTCTACACGGTCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................................................................................GAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................231643.0064311791399642600000
..................................................................................................................GAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................221433.004334058293463200000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................241208.00208312113665900000
..................................................................................................................GAAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................21121.002156200800000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCT...................................................................................................................................................................................................................................................................................................................................24119.0019161100100000
..................................................................................................................GAAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................23117.001732900300000
...................................................................................................................AAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................22111.001108201000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCC..................................................................................................................................................................................................................................................................................................................................25110.001041401000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCT..................................................................................................................................................................................................................................................................................................................................2519.00980100000000
...................................................................................................................AAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2115.00505000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................2414.00420100100000
..................................................................................................................GAAAGCTCTACCCAAACTCATT.....................................................................................................................................................................................................................................................................................................................................2212.00200200000000
......................................................................................................................GCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................1812.00202000000000
...................................................................................................................AAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2312.00200100100000
..................................................................................................................GAAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................1912.00202000000000
.................................................................................................................CGAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2412.00201000100000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCCT.................................................................................................................................................................................................................................................................................................................................2612.00220000000000
..................................................GTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------.......................................................................................................................................................................................................................................................................................................................................................................................2812.00200100100000
.....................................................................................................................AGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..................................................GTGAGTTTAGTGGAGTT-TA.......................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
...................................................................................................................AAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.................................................................................................................CGAAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.................................................................................................................CGAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2311.00100100000000
..................................................................................................................GAAAGCTCTACCCAAACT.........................................................................................................................................................................................................................................................................................................................................1811.00100100000000
...................................................................................................................AAAGCTCTACCCAAACTCATCCG...................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..................................................................................................................GAAAGCTCTACCCAAACTCACT.....................................................................................................................................................................................................................................................................................................................................2211.00110000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATG.....................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATA.....................................................................................................................................................................................................................................................................................................................................2211.00100000100000
...................................................................................................................AAAGCTCTACCCAAACTCATCCCT..................................................................................................................................................................................................................................................................................................................................2411.00110000000000
.....................................................................................................................AGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................2311.00110000000000
droSec2
GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATATC-----CCTCTC-TCCCCTTT--TC-CT-CA----CACA------------------CTTGTATC-----CCACTTC--------------------------------------------------------CT-------GCGCG---------------------------------------------------ACTTCATGGATTTGTAACTGCTTCAAT--GG------------------CTGGACGGTT-TAGATATCTTCTTCAACATCACCCTGAGGCGAAAGACTCTCTTCTACACGGTTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................................................................................GAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................231264.0026487415158
..................................................................................................................GAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................221133.001333841477
..................................................................................................................GAAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................241112.001121711480
..................................................................................................................GAAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................21130.0030142014
..................................................................................................................GAAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................20111.00113008
...................................................................................................................AAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................22110.00107003
..................................................................................................................GAAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................2315.0050005
..................................................................................................................GAAAGCTCTACCCAAACTCTGT.....................................................................................................................................................................................................................................................................................................................................2215.0053002
..................................................................................................................GAAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................1914.0043001
..................................................GTGAGTTTAGTGGAGTT-TA.......................................................................................................................................................................................................................................................................................................................................................................................................1914.0041111
...................................................................................................................AAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2113.0032001
..................................................................................................................GAAAGCTCTACCCAAACTCATCCT...................................................................................................................................................................................................................................................................................................................................2413.0030003
..................................................................................................................GAAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................2413.0030003
...................................................................................................................AAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2313.0032010
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCT..................................................................................................................................................................................................................................................................................................................................2512.0021001
..................................................................................................................GAAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................2312.0020002
...................................................................................................................AAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................2012.0022000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCC..................................................................................................................................................................................................................................................................................................................................2511.0011000
...................................................................................................................AAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................2211.0010001
..................................................................................................................GAAAGCTCTACCCAAACTCTC......................................................................................................................................................................................................................................................................................................................................2111.0011000
.................................................................................................................CGAAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................2111.0010001
..................................................GTGAGTTTAGTGGAGTT-TAAAGCTTC................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
...................................................................................................................AAAGCTCTACCCAAACTCATCCCC..................................................................................................................................................................................................................................................................................................................................2411.0011000
...................................................................................................................AAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................1811.0011000
..................................................................................................................GAAAGCTCTACCCAAACTCAGT.....................................................................................................................................................................................................................................................................................................................................2211.0011000
..................................................................................................................GAAAGCTCTACCCAAACTCATT.....................................................................................................................................................................................................................................................................................................................................2211.0010010
.................................................................................................................CGAAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................2011.0011000
...................................................................................................................AAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................1911.0010001
..................................................GTGAGTTTAGTGGAGTT-TAAAGCTTCC...............................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
...................................................................................................................AAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................2211.0011000
..................................................................................................................GAAAGCTCTACCCAAACTCC.......................................................................................................................................................................................................................................................................................................................................2011.0010001
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCA..................................................................................................................................................................................................................................................................................................................................2511.0010001
..................................................................................................................GAAAGCTCTACCCAAACTCAA......................................................................................................................................................................................................................................................................................................................................2111.0010001
...................................................TGAGTTTAGTGGAGTT-TAA......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
droSim2
GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGCGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATATC-----CCTCTC-TCCCCTTT--TC-CC-GA----CACT------------------TTTGTAAC-----CCACTTC--------------------------------------------------------CT-------GCACG---------------------------------------------------ACTTCATGGATTTGTAACTGCTTCAAT--GG------------------CTGGACGGTT-TAGATATCTTCTTCAATATCACCCTGAGGCGAAAGACTCTCTTCTACACGGTTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................................................................................GAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................231608.00608244131107295002201600000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................241540.005406722221242700000800000
..................................................................................................................GAAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................201334.003340000532900000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................221300.00300890113318200130800000
..................................................................................................................GAAAGCTCTACCCAAACT.........................................................................................................................................................................................................................................................................................................................................181135.001355000212800000000000
..................................................................................................................GAAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................191126.001262000412000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCC..................................................................................................................................................................................................................................................................................................................................25194.0094000039000010000000
..................................................................................................................GAAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................21184.00841003226600000100000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCT...................................................................................................................................................................................................................................................................................................................................24115.0015140100000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................2314.00420100000000100000
...................................................................................................................AAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2314.00410010200000000000
...................................................................................................................AAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2213.00320000100000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................2412.00200100000100000000
..................................................GTGAGTTTAGTGGAGTT-T........................................................................................................................................................................................................................................................................................................................................................................................................1812.00200010000000100000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCT..................................................................................................................................................................................................................................................................................................................................2512.00220000000000000000
...................................................................................................................AAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
........................................................................................................................TCTACCCAAACTCATCCT...................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCG...................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
............................................................................CCC-------ATCGCCAGCAA-----------TTAC.............................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC......................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.................................................................................................................CGAAAGCTCTACCCAAAC..........................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
..................................................................................................................................................................................................................................................................................................................................................................................TCAAT--GG------------------CTGGACGGTT-TA...................................................1911.00100000000000000001
............................................................................................AGCAA-----------TTACGCGAAAGCTCTACC...............................................................................................................................................................................................................................................................................................................................................2311.00100000100000000000
dm3
GGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCGAAAA-TGATC-----CCTTTC-TCCCCTTT--TC-CC-AA----CACA------------------TTTGTATC-----CCACTTC--------------------------------------------------------CT-------GCGCG---------------------------------------------------TCTTCGTGGATTTGTAACTGCTTCAAT--GG------------------CTGGACGGTT-TAGATATCTTCTTCAACATCACCCTGAGGCGAAAGACTCTCTTCTACACGGTTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................................................................GAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2317509.00750900004900001313101000100000000102951071100000000000000001000001618400000000000000000001114616053000351520382817710271056122256180011033225223114680471270523412611542023214900000000000000000000000000000000000028628302190122511521030194042590000068100000000000000000000000000000000001000100000000300290000163905000002700000000000000000000000000002213104302000000005042000100000000000003500101000000
..................................................................................................................GAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2214508.0045080000250000801301000100001000071917822000000000000000000000022000000000000000000000187000200013310891920652010254610875108181012270424125025031165309321136770000000000000001000000000000000000701842080177101999619571375234270000051200200000010000000000000000000001112020100000000300210200018211700000210000010000001000100010000000916162515120000014023000000000000000011010021000000
..................................................................................................................GAAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................2111910.001910000013100000000000000000000000135460000000000000000000000004600000000000000000002113900010002033814147111008850820020101001071167040215024573560000000000000000000000000000000090008812107600475113607501210000001510000000000000000000000000000000000000000000000000013000038010000020000000000000000000000000000633100000000000000100000000000000000400000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2411732.001732000019001020100100120000000001119260000000000000000000100005710000000000000000000004320120000226421511015106205440207521093307220210190191638027437280000000000000000000000000000000000005448041003629120133081300000116100000000000000000000000000000000100000000000002002410004110200000210000000000000000000000000000133802310000000021000000000000000011400201000000
..................................................GTGAGTTTAGTGGAGTT-TA.......................................................................................................................................................................................................................................................................................................................................................................................................191604.0060400000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001124374700100022000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................201335.00335000030000000000000000000000000650000000000000000000000001000000000000000000000004000000000070080000058700000001000000410001000711470000000000000000000000000000000000001731010001460602103200000020000000000000000000000000000000000000000000000000000000002500000000000000000000000000000000000010250000000000001000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................231198.0019800000000010100000000000000000000000000000000000000000000000000000000000000000000600000000001000200002467000100000000000101021301013400000000000000000000000000000000000059090056011401300000016000000000000000000000000000000000000000000000000000210000300000000000000000000000000000000000010010000000000000100000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................241182.0018200001000000000000000000000000000000000000000000000000000000000000000000000000000600000000016011401101077000200000010102202010308044000000000000000000000000000000000000380900340002050000006000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................231109.0010900002000000100000000000000000000000000000000000000000000000000000000000000000000100000000002004000020250000000000001032020223030620000000000000000000000000000000000004804002302030800000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................GAAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................19188.00880000000000000000000000000000401111000000000000000000000010000000000000000000000000000000000000200000000000000000000030000000004530000000000000000000000000000000000000150110010140013000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000100000000000
...................................................................................................................AAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................22187.008700000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000100000000000000340202230200100000000000000000000000000000000000081005009000050700000017000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010000010000000000000000000000000000100000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCT...................................................................................................................................................................................................................................................................................................................................24171.00710000010001000000000000000000000000000000000000000000000000000000000000000000000030000000000100000000021000000001010001000010201051000000000000000000000000000000000000220400100003040000009000000000000000000000000000000000000000000000000000100000100000001000000000000000000000000000000010000000000000000000000000000000100001000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCC..................................................................................................................................................................................................................................................................................................................................25169.006900000000010000000000000000000000000000000000000000000000041000000000000000000000300000000004116011001160000000010000011000001010010000000000000000000000000000000000002201001100010100000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000
...................................................................................................................AAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................21142.00420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000001020000000000000000000000000000000002000003403003200050300000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATA.....................................................................................................................................................................................................................................................................................................................................22139.0039000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000001103020100021000000000000000000000000000000000000010000010004021000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCA..................................................................................................................................................................................................................................................................................................................................25127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110080000008000000000000001100001202000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................23126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000210000000000000000000000000000000000000000110000310000010000003000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATT.....................................................................................................................................................................................................................................................................................................................................22125.0025000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000060000000002000000000000000000000000000000000000000000000000000000000000000000200040400030000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................GTGAGTTTAGTGGAGTT-TAAA.....................................................................................................................................................................................................................................................................................................................................................................................................21122.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100110000000001100000000000000000200000000000
..................................................................................................................GAAAGCTCTACCCAAACT.........................................................................................................................................................................................................................................................................................................................................18122.0022000000000000000000000000000021001000000000000000000000000010000000000000000001000000000000010010000000000000000000000000010000500000000000000000000000000000000000000000000001020003000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................20119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000340200100101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
..................................................GTGAGTTTAGTGGAGTT-TAA......................................................................................................................................................................................................................................................................................................................................................................................................20114.0014000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010101100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010120000000000100000000000000000001000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCT..................................................................................................................................................................................................................................................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001000000000000000000000000000000000000210000010001010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGTTTAGTGGAGTT-T........................................................................................................................................................................................................................................................................................................................................................................................................1818.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012100200000000000000000000000000000100000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCG....................................................................................................................................................................................................................................................................................................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000010000000000000000000000000000000000000000000200002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CGAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000010000000000000000000000000000000000000000200000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................GTGAGTTTAGTGGAGTT-TAAAGCT..................................................................................................................................................................................................................................................................................................................................................................................................2417.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000010000000
...................................................................................................................AAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................2317.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAG......................................................................................................................................................................................................................................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000310000010000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCATC................................................................................................................................................................................................................................................................................................................................2716.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------AT.....................................................................................................................................................................................................................................................................................................................................................................................3016.006000000000000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGTTTAGTGGAGTT-TAAAG....................................................................................................................................................................................................................................................................................................................................................................................................2216.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100002000000001000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAA......................................................................................................................................................................................................................................................................................................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000030000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC......................................................................................................................................................................................................................................................................................................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000020100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGTTTAGTGGAGTT-TC.......................................................................................................................................................................................................................................................................................................................................................................................................1915.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040001000000000000000000000000000000
..................................................GTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGC..................................................................................................................................................................................................................................................................................................................................................................................3315.005000000000000000000000000000000000000000000000000000000002300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGAGTTTAGTGGAGTT-TA.......................................................................................................................................................................................................................................................................................................................................................................................................1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000
..................................................GTGAGTTTAGTGGAGTT-TAAAGCTTC................................................................................................................................................................................................................................................................................................................................................................................................2614.004000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCTT...................................................................................................................................................................................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
AGCCGAGCGGCACGAGAAGTACTATCCGTGCTGTGCTGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCT-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAACA------TTTTCCTAC--CC--T-C----TC--C-TCC---AA------------------C-TTTGCTTT----ACTATTCC--------------------------------------------------------TA-------CCGCG---------------------------------------------------ACTTTTTGGATTTTTGACTGGTTAAAT--GT------------------CTGGCCTGTA-CAGACATCTTCTTTAACATCACCCTGAGAAGGAAGACTCTTTTCTACACGGTTSizeHit CountTotal NormTotal
No Reads
droBia1
GGCCGAGCGGCACGAGAAGTACTATCCCTGCTGTGCGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGC---CC-------ATCGCCTGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA------ATTGTCCTC--CC--T---C--TC-C-CCC-CAAAACT------------------TTTACCAT-----CTTTTTT--------------------------------------------------------CA-------CCGCA---------------------------------------------------ACTTCTTGGATTTTTGACTGGTTTGAT--GG------------------CTGGCCTGTT-CAGATATCTTCTTTAACATCACGCTGAGGCGGAAGACCCTCTTCTACACGGTCSizeHit CountTotal NormTotal
No Reads
droTak1
AGCCGAGCGGCACGAGAAGTACTATCCCTGCTGTGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCGGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCAAAAA-ACAT--TTTCCCTC----CCTCTTT--TC-CC--C-CAAAAA-AAATATTTATTTAT------CATATG-----CAATATC--------------------------------------------------------AT-------ACGCA---------------------------------------------------ACTTCTTGGACTTGTAACTGTTTT--T--GGCC--------------AACTGGCCTGTT-CAGATATCTTCTTCAATATCACCCTGCGGCGAAAGACGCTCTTCTACACGGTTSizeHit CountTotal NormTotal
No Reads
droEle1
GGCGGAGCGGCACGAGAAGTACTATCCGTGCTGTGCGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTCAAAA------TCTCTCT------CCCCCTC--TC-CC-GT---TGA---------------------TTCTATC-----CCATTTCTCCATTTC------------------------------------------------AC-------CTGCG---------------------------------------------------ACAACTGGGATTTGTGACTGATTTAAT--GC------------------CTGACTTGCT-CAGATATCTTCTTCAATATCACCCTGAGGCGGAAGACACTCTTCTACACCGTCSizeHit CountTotal NormTotal
No Reads
droRho1
GGCCGAGCGGCACGAGAAGTACTATCCGTGCTGTGCGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGACAA-----------TGACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA------TTTCTC-TCC-CT------C--TC-CC-TTT---GA---------------------TTCTGTG-----ATATTTC--------------------------------------------------------TC-------CTGCG---------------------------------------------------ATGTCTTGGATTTCTGACTGATTTAAT--GC------------------CTGACTTGTG-CAGATATCTTCTTCAATATCACCCTGAGGCGGAAGACCCTGTTCTACACTGTCSizeHit CountTotal NormTotal
No Reads
droFic1
GGCGGAGCGGCACGAAAAATACTATCCGTGCTGCGCGGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGACAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTCAAAAAAT------ATCTA-C-CC--C--TCTTTC--C-TAC---AA------------------C-T------------CTATTTC--------------------------------------------------------TATT-----TTGCT---------------------------------------------------GCTTCCTGGATTTGTGACTGGTTTAAT--GA------------------CTGGTTTAAT-CAGATATCTTCTTCAACATCACACTTCGACGGAAGACTCTCTTCTACACTGTGSizeHit CountTotal NormTotal
No Reads
droKik1
AGCGGAGCGGCACGAGAAGTACTATCCGTGCTGCGCGGAGCCCTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCCTCCA-------ATCGCCGGCAA-----------TTGCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA------TTT--CTA-C-CC----TAC--TC-CC-TG-TA-----------------------TT--TATCCC--TCGATTTC--------------------------------------------------------TC-------TGGTG---------------------------------------------------AT--------------------GTCCTCTGGCTACTGAATTGAAATGAACTGGCTTGTT-CAGATATCTTCTTCAATATCACCCTGCGGCGAAAGACTCTTTTCTACACGGTCSizeHit CountTotal NormTotal
No Reads
droAna3
GGCGGAGCGGCACGAGAAGTACTATCCGTGCTGCGCCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA------CCTTTTT---------------TC--CC-CC---CA------------------TTTTCTTCCC--TTACTGTTTT------------------------------------------------------------------TGCA---CTTTGGAT--------------------TTTATGT---------GGC------------------CTG-----CT--GG------------------ATGGCTTCTT-CAGATATATTTTTCAACATCACCCTGAGGCGGAAGACGCTGTTCTACACGGTCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................GAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................231234.002347511822136
..................................................................................................................GAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................221154.00154506616031
..................................................................................................................GAAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................241100.00100215701021
..................................................................................................................GAAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................21182.008243209127
..................................................................................................................GAAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................20120.00201400204
..................................................................................................................GAAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................2318.008120104
...................................................................................................................AAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2217.007510001
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCC..................................................................................................................................................................................................................................................................................................................................2515.005211001
...................................................................................................................AAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................2014.004400000
..................................................................................................................GAAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................1913.003100002
..................................................................................................................GAAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................2413.003000003
...................................................................................................................AAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2313.003201000
..................................................................................................................GAAAGCTCTACCCAAACTCTC......................................................................................................................................................................................................................................................................................................................................2113.003300000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCT..................................................................................................................................................................................................................................................................................................................................2512.002100100
..................................................................................................................GAAAGCTCTACCCAAACTCTGT.....................................................................................................................................................................................................................................................................................................................................2222.004100003
..................................................................................................................GAAAGCTCTACCCAAACTCATCCTT..................................................................................................................................................................................................................................................................................................................................2512.002110000
...................................................................................................................AAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2112.002200000
....................................................................................................................AAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2012.002200000
..................................................................................................................GAAAGCTCTACCCAAACTCATA.....................................................................................................................................................................................................................................................................................................................................2212.002020000
.................................................................................................................CGAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2311.001010000
..................................................................................................................GAAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................2311.001000001
..................................................GTGAGTTTAGTGGAGTT-TAAT.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................AAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................1911.001100000
........................................................TTAGTGGAGTT-TAATGCTTC................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...................................................................................................................AAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................1811.001100000
.....................................................................................................................AGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................1911.001100000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCT...................................................................................................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCA..................................................................................................................................................................................................................................................................................................................................2511.001000001
..................................................................................................................GAAAGCTCTACCCAAACTCATT.....................................................................................................................................................................................................................................................................................................................................2211.001000001
....................................................................................................................AAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
GGCGGAGCGGCACGAAAAGTACTATCCTTGCTGCGCCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCCGAAAAAAT-AC-----CTTCTT-----------TC--CC-CC---CA------------------TTTTCTTCCT--TTACTGTTTT------------------------------------------------------------------TGCT---TTTCGGAT--------------------AT----------------------------TTTGTGGCCGCTTCGAT--TA----------------------CTTGTT-CAGATATATTCTTCAACATAACCCTGAGGCGGAAGACACTCTTCTACACGGTTSizeHit CountTotal NormTotal
No Reads
dp5
GGCGGAGCGTCATGAGAAGTACTATCCGTGCTGCGCCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTAACA-------ATCGCCGACAATCA------AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAA--------TTGTTTT---C-----CTC--CCC--CAC-CAA----AAATCTCCCTCA-CCC----TGTAAA-----TCAC-----------------------------------------------------------T-----------------------------------------------ATGC---------GGCTGCT----------------GCTGGTATTCGGC-----------------TTGGACTGTTCCAGATATCTTCTTCAATATAACCCTGAGGCGGAAGACTCTGTTCTACACGGTTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................................................................................GAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2311626.001626019030911028161000
..................................................................................................................GAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2211060.00106001341297716200000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................241319.00319036132142801000
..................................................................................................................GAAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................23178.0078015357020001
...................................................................................................................AAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................22173.0073019843120000
..................................................................................................................GAAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................21151.0051012235020000
...................................................................................................................AAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................21125.0025012013000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................24121.002103315000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCT...................................................................................................................................................................................................................................................................................................................................24117.001702410100000
..................................................................................................................GAAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................23114.001402110010000
..................................................................................................................GAAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................20112.00120606000000
...................................................................................................................AAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................23112.00120215400000
.................................................................................................................CGAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2419.0090207000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCT..................................................................................................................................................................................................................................................................................................................................2516.0060303000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCA..................................................................................................................................................................................................................................................................................................................................2515.0050221000000
...................................................................................................................AAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................2215.0050500000000
...................................................................................................................AAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................2314.0040103000000
.................................................................................................................CGAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2314.0040103000000
..................................................................................................................GAAAGCTCTACCCAAACTCATA.....................................................................................................................................................................................................................................................................................................................................2214.0040004000000
...................................................................................................................AAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................2013.0030300000000
..................................................................................................................GAAAGCTCTACCCAAACTCACT.....................................................................................................................................................................................................................................................................................................................................2213.0030300000000
....................................................................................................................AAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2112.0020200000000
.......................................................................................................................CTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................1812.0020002000000
...................................................................................................................AAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................2212.0020101000000
..................................................................................................................GAAAGCTCTACCCAAACTCATTT....................................................................................................................................................................................................................................................................................................................................2312.0020101000000
..................................................GTGAGTTTTGTGGAGTT-T........................................................................................................................................................................................................................................................................................................................................................................................................1812.0020100010000
..................................................................................................................GAAAGCTCTACCCAAACTCATCG....................................................................................................................................................................................................................................................................................................................................2311.0010001000000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCC..................................................................................................................................................................................................................................................................................................................................2511.0010010000000
...............................................................................................AATCA------AATTACGCGAAAGCTCTACCCAAA...........................................................................................................................................................................................................................................................................................................................................2911.0010010000000
..................................................................................................................GAAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................CGAAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................2411.0010001000000
..................................................................................................................GAAAGCTCTACCCAAACTCACTT....................................................................................................................................................................................................................................................................................................................................2311.0010010000000
...................................................................................................................AAAGCTCTACCCAAACTCATCCT...................................................................................................................................................................................................................................................................................................................................2311.0010001000000
...................................................................................................................AAAGCTCTACCCAAACTCATTT....................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................GAAAGCTCTACCCAAACTCTC......................................................................................................................................................................................................................................................................................................................................2111.0010001000000
.....................................................................................................................AGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................GAAAGCTCTACCCAAACT.........................................................................................................................................................................................................................................................................................................................................1811.0010100000000
................................................................................................................GCGAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2511.0010010000000
...................................................................................................................AAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................AAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................GAAAGCTCTACCCAAACTTCC......................................................................................................................................................................................................................................................................................................................................2150.2010001000000
droPer2
GGCGGAGCGGCACGAGAAGTACTATCCGTGCTGCGCCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTTACA-------ATCGCCGACAATCA------AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAA--------TTGTTTT---C-----CTC--CCC--CAC-CAA----AAATCTCCCTCT-CCC----TGTAAA-----TCAC-----------------------------------------------------------T-----------------------------------------------ATGC---------GGCTGCT----------------GCTGGTATTCGGC-----------------TTGGACTGTTCCAGATATCTTCTTCAATATAACCCTGAGGCGGAAGACTCTGTTCTACACGGTTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................................................................................GAAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................221100.00100027129421
..................................................................................................................GAAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................23179.0079439217170
..................................................................................................................GAAAGCTCTACCCAAACTCAT......................................................................................................................................................................................................................................................................................................................................21125.00250130750
..................................................................................................................GAAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................23116.0016041470
..................................................................................................................GAAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................24115.0015370230
..................................................................................................................GAAAGCTCTACCCAAACTCATCCT...................................................................................................................................................................................................................................................................................................................................2416.006000240
..................................................................................................................GAAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................2314.004010210
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCT..................................................................................................................................................................................................................................................................................................................................2513.003300000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCA..................................................................................................................................................................................................................................................................................................................................2512.002010010
..................................................GTGAGTTTTGTGGAGTT-TAAAGT...................................................................................................................................................................................................................................................................................................................................................................................................2312.002000020
..................................................GTGAGTTTTGTGGAGTT-T........................................................................................................................................................................................................................................................................................................................................................................................................1812.002000110
..................................................................................................................GAAAGCTCTACCCAAACTCATCCG...................................................................................................................................................................................................................................................................................................................................2411.001000010
..................................................................................................................GAAAGCTCTACCCAAACTCATCCCG..................................................................................................................................................................................................................................................................................................................................2511.001100000
.................................................................................................................CGAAAGCTCTACCCAAACTCATCT....................................................................................................................................................................................................................................................................................................................................2411.001010000
...................................................................................................................AAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................2311.001010000
..................................................GTGAGTTTTGTGGAGTT-TAAAGTTT.................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
...................................................................................................................AAAGCTCTACCCAAACTCATCC....................................................................................................................................................................................................................................................................................................................................2211.001000100
...................................................................................................................AAAGCTCTACCCAAACTCATC.....................................................................................................................................................................................................................................................................................................................................2111.001010000
..................................................................................................................GAAAGCTCTACCCAAACTCATCCAA..................................................................................................................................................................................................................................................................................................................................2511.001010000
..................................................................................................................GAAAGCTCTACCCAAACTCATT.....................................................................................................................................................................................................................................................................................................................................2211.001000010
...................................................................................................................AAAGCTCTACCCAAACTCATCA....................................................................................................................................................................................................................................................................................................................................2211.001010000
...................................................................................................................AAAGCTCTACCCAAACTCATCCC...................................................................................................................................................................................................................................................................................................................................2311.001000010
..................................................................................................................GAAAGCTCTACCCAAACTCATCCA...................................................................................................................................................................................................................................................................................................................................2411.001010000
..................................................GTGAGTTTTGTGGAGTT-TAAA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..................................................................................................................GAAAGCTCTACCCAAACTCTGT.....................................................................................................................................................................................................................................................................................................................................2220.501010000
droWil2
AGCCGAGCGACATGAAAAATATTATCCTTGCTGTGCTGAACCATATCCAGGTGAGTTTTGTAGAGTTTTAAAGCTATAA-------ATCGCCGGTAAATAGACGTTAAAGACGCGAAAGCTCTACCCAAACTCAC-CCCGGAA-A------TTTTTTTATT--CTCTTTTT--TC-CC-AA----CAAA------------------AATAATGA-----CAATTTA--------------------------------------------------------T-----------------CTTGGAA--------------------ATTTGGT---------------------------AAACACTTTAAAT--AA------------------TTGTATATAT-TAGATATATTTTTCAATATCACACTAAGAAGGAAGACTCTCTTTTACACCGTTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CC...................................................................................................................................................................................................................................................................................................................................2317078.007078664886260282
...................................................................................................................AAAGCTCTACCCAAACTCAC-CC...................................................................................................................................................................................................................................................................................................................................221519.005193902901486
..................................................................................................................GAAAGCTCTACCCAAACTCAC-C....................................................................................................................................................................................................................................................................................................................................221447.0044741192223
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CT...................................................................................................................................................................................................................................................................................................................................231445.00445398162722
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CCT..................................................................................................................................................................................................................................................................................................................................241443.004434355012
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CCC..................................................................................................................................................................................................................................................................................................................................241417.00417380121618
...................................................................................................................AAAGCTCTACCCAAACTCAC-CCT..................................................................................................................................................................................................................................................................................................................................231228.002282163036
...................................................................................................................AAAGCTCTACCCAAACTCAC-CCC..................................................................................................................................................................................................................................................................................................................................231204.00204147130440
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CCA..................................................................................................................................................................................................................................................................................................................................241108.001081031004
..................................................GTGAGTTTTGTAGAGTTTTAAAGC...................................................................................................................................................................................................................................................................................................................................................................................................24197.0097850057
...................................................................................................................AAAGCTCTACCCAAACTCAC-C....................................................................................................................................................................................................................................................................................................................................21173.00735531014
...................................................................................................................AAAGCTCTACCCAAACTCAC-CT...................................................................................................................................................................................................................................................................................................................................22170.0070633112
.................................................................................................................CGAAAGCTCTACCCAAACTCAC-CC...................................................................................................................................................................................................................................................................................................................................24155.0055490015
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CCCT.................................................................................................................................................................................................................................................................................................................................25125.0025250000
..................................................GTGAGTTTTGTAGAGTTTTAAAGCT..................................................................................................................................................................................................................................................................................................................................................................................................25122.002270087
....................................................................................................................AAGCTCTACCCAAACTCAC-CCT..................................................................................................................................................................................................................................................................................................................................22121.0021192000
...................................................................................................................AAAGCTCTACCCAAACTCAC-CCA..................................................................................................................................................................................................................................................................................................................................23119.0019170011
.................................................................................................................CGAAAGCTCTACCCAAACTCAC-CT...................................................................................................................................................................................................................................................................................................................................24118.0018140112
....................................................................................................................AAGCTCTACCCAAACTCAC-CC...................................................................................................................................................................................................................................................................................................................................21113.0013101002
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CCG..................................................................................................................................................................................................................................................................................................................................24113.0013130000
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CCTT.................................................................................................................................................................................................................................................................................................................................25112.0012120000
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CTT..................................................................................................................................................................................................................................................................................................................................24112.0012102000
..........................................................................TATAA-------ATCGCCGGTAAATAGACGTT...................................................................................................................................................................................................................................................................................................................................................................2519.00990000
...................................................................................................................AAAGCTCTACCCAAACTCAC-CCCT.................................................................................................................................................................................................................................................................................................................................2419.00972000
....................................................................................................................AAGCTCTACCCAAACTCAC-CCC..................................................................................................................................................................................................................................................................................................................................2218.00842011
...................................................................................................................AAAGCTCTACCCAAACTCAC-CCG..................................................................................................................................................................................................................................................................................................................................2318.00880000
.................................................................................................................CGAAAGCTCTACCCAAACTCAC-C....................................................................................................................................................................................................................................................................................................................................2318.00880000
...........................................................................................CGGTAAATAGACGTTAAAGACGC...........................................................................................................................................................................................................................................................................................................................................................2315.00500014
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CG...................................................................................................................................................................................................................................................................................................................................2315.00541000
.....................................................................................................................AGCTCTACCCAAACTCAC-CCT..................................................................................................................................................................................................................................................................................................................................2115.00532000
..................................................................................................................GAAAGCTCTACCCAAACTCAC-.....................................................................................................................................................................................................................................................................................................................................2115.00531010
...................................................................................................................AAAGCTCTACCCAAACTCAC-CCTT.................................................................................................................................................................................................................................................................................................................................2415.00550000
..........................................................................................CCGGTAAATAGACGTTAAAGACGCG..........................................................................................................................................................................................................................................................................................................................................................2515.00510031
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CA...................................................................................................................................................................................................................................................................................................................................2315.00530002
....................................................................................................................AAGCTCTACCCAAACTCAC-C....................................................................................................................................................................................................................................................................................................................................2014.00440000
.....................................................................................................................AGCTCTACCCAAACTCAC-CCTT.................................................................................................................................................................................................................................................................................................................................2214.00440000
.....................................................................................................................AGCTCTACCCAAACTCAC-CCCA.................................................................................................................................................................................................................................................................................................................................2214.00413000
..................................................................................................................GAAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................2013.00303000
...................................................................................................................AAAGCTCTACCCAAACTCAC-CA...................................................................................................................................................................................................................................................................................................................................2213.00302001
..................................................GTGAGTTTTGTAGAGTTTTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................2313.00310011
....................................................................................................................AAGCTCTACCCAAACTCAC-CCCT.................................................................................................................................................................................................................................................................................................................................2313.00330000
...................................................................................................................AAAGCTCTACCCAAACTCAC-CTT..................................................................................................................................................................................................................................................................................................................................2313.00330000
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CTA..................................................................................................................................................................................................................................................................................................................................2412.00220000
...................................................................................................................AAAGCTCTACCCAAACTCAC-CG...................................................................................................................................................................................................................................................................................................................................2212.00220000
..................................................................................................................GAAAGCTCTACCCAAACTCAT-.....................................................................................................................................................................................................................................................................................................................................2112.00201001
.....................................................................................................................AGCTCTACCCAAACTCAC-CCC..................................................................................................................................................................................................................................................................................................................................2112.00211000
..................................................GTGAGTTTTGTAGAGTTTTAAAGCC..................................................................................................................................................................................................................................................................................................................................................................................................2512.00220000
....................................................................................................................AAGCTCTACCCAAACTCAC-CCA..................................................................................................................................................................................................................................................................................................................................2212.00211000
....................................................................................................................AAGCTCTACCCAAACTCAC-CCCA.................................................................................................................................................................................................................................................................................................................................2312.00201010
...................................................................................................................AAAGCTCTACCCAAACTCAC-.....................................................................................................................................................................................................................................................................................................................................2012.00201001
..................................................GTGAGTTTTGTAGAGTTTTAA......................................................................................................................................................................................................................................................................................................................................................................................................2112.00200011
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CCCC.................................................................................................................................................................................................................................................................................................................................2512.00220000
..................................................GTGAGTTTTGTAGAGTTTTAAAGCTA.................................................................................................................................................................................................................................................................................................................................................................................................2612.00200002
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CCCA.................................................................................................................................................................................................................................................................................................................................2512.00220000
..................................................GTGAGTTTTGTAGAGTTTTAAA.....................................................................................................................................................................................................................................................................................................................................................................................................2212.00220000
..........................................................................................CCGGTAAATAGACGTTAAAGAC.............................................................................................................................................................................................................................................................................................................................................................2212.00220000
............................................................................................GGTAAATAGACGTTAAAGACGC...........................................................................................................................................................................................................................................................................................................................................................2212.00200011
.....................................................................................................................AGCTCTACCCAAACTCAC-CCCG.................................................................................................................................................................................................................................................................................................................................2211.00110000
...................................................................................................................AAAGCTCTACCCAAACTCAC-CCCC.................................................................................................................................................................................................................................................................................................................................2411.00110000
..................................................................................................................GAAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................1911.00101000
..................................................GTGAGTTTTGTAGAGTTTTA.......................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
....................................................................................................................AAGCTCTACCCAAACTCAC-CT...................................................................................................................................................................................................................................................................................................................................2111.00101000
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CGT..................................................................................................................................................................................................................................................................................................................................2411.00110000
..................................................................................................................GAAAGCTCTACCCAAACTCAC-AA...................................................................................................................................................................................................................................................................................................................................2311.00100001
...................................................................................................................AAAGCTCTACCCAAACTCAC-CCCA.................................................................................................................................................................................................................................................................................................................................2411.00100001
......................................................................................................................GCTCTACCCAAACTCAC-CC...................................................................................................................................................................................................................................................................................................................................1911.00100001
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CCCG.................................................................................................................................................................................................................................................................................................................................2511.00110000
...................................................................................................................AAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................1911.00100001
.................................................................................................................CGAAAGCTCTACCCAAACTCAC-CCT..................................................................................................................................................................................................................................................................................................................................2511.00110000
..................................................................................................................GAAAGCTCTACCCAAACTCAC-TT...................................................................................................................................................................................................................................................................................................................................2311.00100010
..................................................................................................................GAAAGCTCTACCCAAACTCAC-CCAC.................................................................................................................................................................................................................................................................................................................................2511.00110000
.......................................................................................................................CTCTACCCAAACTCAC-CC...................................................................................................................................................................................................................................................................................................................................1811.00110000
........................................................TTTGTAGAGTTTTAAAGCTATA...............................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
................................................................................................................GCGAAAGCTCTACCCAAACTCAC-CC...................................................................................................................................................................................................................................................................................................................................2511.00110000
..................................................GTGAGTTTTGTAGAGTTTTAAAGCTATA...............................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
..........................................................................TATAA-------ATCGCCGGTAAATAGACGTTT..................................................................................................................................................................................................................................................................................................................................................................2611.00110000
...................................................................................................................AAAGCTCTACCCAAACTCAC-CTA..................................................................................................................................................................................................................................................................................................................................2311.00100010
.......................................................................AGCTATAA-------ATCGCCGGTA.............................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..........................................................................TATAA-------ATCGCCGGTAAATAGACGTTA..................................................................................................................................................................................................................................................................................................................................................................2611.00100001
........................................................................................................................TCTACCCAAACTCAC-CCT..................................................................................................................................................................................................................................................................................................................................1830.33110000
droVir3
TGCTGAACGCCATGAGAAATATTATCCCTGCTGTGCCGAGCCGTATCCGGGTGAGTTTCGTAGAGTT-TAAAGCTCTTA--CTTTGCTCGCTGGCAC----GC-----CCACGCGAAAGCTCTACCCAAACTCAC--TATGCAAA------CCC--CCA-A-CC----CAT--AC---------------------------------------------------CCAAATCCATGCTCCT---------------TGTCTCTCTCTCTCTCTCTTTCTCTCTC-------TCTCT-------------CTCTCTCTCCACTTTTGTTTCATGC------TGCACT---C----------------GCTGGCTCTT--------------------GTTGAATGTT-CAGACATATTCTTTAATATAACGCTGCGACGGAAGACACTCTTCTACACGGTTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................................GAAAGCTCTACCCAAACTCAC--T...................................................................................................................................................................................................................................................................................................................................221343.0034323539190000000000392281626906540000000000000000000000000000000000030018000000002000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TAT.................................................................................................................................................................................................................................................................................................................................24183.00830110400000000001454862012900000000000000000000000000000000100007000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TA..................................................................................................................................................................................................................................................................................................................................23178.00780123800000000001052323033000000000000000000000000000000000003012000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TT..................................................................................................................................................................................................................................................................................................................................23177.0077179130000000000104264307300000000000000000000000000000000000008000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--....................................................................................................................................................................................................................................................................................................................................21123.00230130000000000060021005100000000000000000000000000000000001002000000001000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TAA.................................................................................................................................................................................................................................................................................................................................24113.00130122000000000011031002000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--C...................................................................................................................................................................................................................................................................................................................................2216.0060402000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................2015.0050000000000000001000102000000000000000000000000000000000000000000010000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TAAA................................................................................................................................................................................................................................................................................................................................2513.0030001000000000010010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TC..................................................................................................................................................................................................................................................................................................................................2313.0030011000000000000100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AAAGCTCTACCCAAACTCAC--T...................................................................................................................................................................................................................................................................................................................................2113.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TG..................................................................................................................................................................................................................................................................................................................................2313.0030010000000000010000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................CGAAAGCTCTACCCAAACTCAC--T...................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TTA.................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CGAAAGCTCTACCCAAACTCAC--TAT.................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TATA................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................AAAGCTCTACCCAAACTCAC--TA..................................................................................................................................................................................................................................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTC........................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TATAA...............................................................................................................................................................................................................................................................................................................................2611.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGTTTCGTAGAGTT-TAAAG....................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
..................................................................................................................GAAAGCTCTACCCAAACTCCT--....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................................................................GCTCTACCCAAACTCAC--TA..................................................................................................................................................................................................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GTT-TAAAGCTCTTA--CTTTGCTCGT..................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CGAAAGCTCTACCCAAACTCAC--TAA.................................................................................................................................................................................................................................................................................................................................2511.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TTTCTCTCTC-------TCTCT-------------CTCTCTCT...............................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................CTCTCTCTCTTTCTCTCTC-------TCTCT-------------.......................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000100000000000000
droMoj3
CGCTGAGCGCCACGAGAAGTATTATCCGTGCTGTGCCGAGCCCTATCCCGGTGAGTTTCGTAGAGTT-TAAAGCTCACA--CTTTGCTCGCCAACAA----GC-----GCACGCGAAAGCTCTACCCAAACTCAC--TATGAAAA------TCT--ATA-C-TC----CAA--AC---------------------------------------------------CCGAATCCAATCTTCGTGGATTCCATCATCGTGTCTCTCTCTCTCTCTCTCTCTCTCTC--TCTCTGTTTGTCTTTCTGGATCTCTTTCTTTCTTTTGGTATTTCATGC------TGCTCT---C----------------GCTGGCCTT--G------------------ATCAAATGTT-CAGACATCTTCTTCAACATAACGCTGAGACGAAAGACCCTCTTCTACACGGTCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................................................................................GAAAGCTCTACCCAAACTCAC--T...................................................................................................................................................................................................................................................................................................................................221230.0023014101923452
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TAT.................................................................................................................................................................................................................................................................................................................................24174.007448025181
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TA..................................................................................................................................................................................................................................................................................................................................23173.007340115251
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TT..................................................................................................................................................................................................................................................................................................................................23130.003014031120
...................................................................................................................AAAGCTCTACCCAAACTCAC--T...................................................................................................................................................................................................................................................................................................................................21122.00222100100
..................................................................................................................GAAAGCTCTACCCAAACTCAC--C...................................................................................................................................................................................................................................................................................................................................22118.00180000180
...................................................................................................................AAAGCTCTACCCAAACTCAC--TT..................................................................................................................................................................................................................................................................................................................................2214.004400000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TAC.................................................................................................................................................................................................................................................................................................................................2414.004000040
...................................................................................................................AAAGCTCTACCCAAACTCAC--TA..................................................................................................................................................................................................................................................................................................................................2214.004400000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TATT................................................................................................................................................................................................................................................................................................................................2513.003300000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TAA.................................................................................................................................................................................................................................................................................................................................2413.003100020
...................................................................................................................AAAGCTCTACCCAAACTCAC--TAT.................................................................................................................................................................................................................................................................................................................................2313.003300000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--....................................................................................................................................................................................................................................................................................................................................2113.003200010
..................................................................................................................GAAAGCTCTACCCAAACTCA.......................................................................................................................................................................................................................................................................................................................................2012.002100100
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TAAA................................................................................................................................................................................................................................................................................................................................2512.002101000
..................................................................................................................GAAAGCTCTACCCAAACTCCT--....................................................................................................................................................................................................................................................................................................................................2112.002200000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TATC................................................................................................................................................................................................................................................................................................................................2511.001000010
...................................................................................................................AAAGCTCTACCCAAACTCAC--TATT................................................................................................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................GAAAGCTCTACCCAAACTCAT--C...................................................................................................................................................................................................................................................................................................................................2211.001000010
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TATGA...............................................................................................................................................................................................................................................................................................................................2611.001100000
..................................................................................................................GAAAGCTCTACCCAAACTCAT--AC..................................................................................................................................................................................................................................................................................................................................2311.001000010
..................................................GTGAGTTTCGTAGAGTT-TAAAGC...................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TAG.................................................................................................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................AAGCTCTACCCAAACTCAC--TA..................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TATG................................................................................................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................GCTCTACCCAAACTCAC--T...................................................................................................................................................................................................................................................................................................................................1811.001100000
.................................................................................................................CGAAAGCTCTACCCAAACTCAC--TA..................................................................................................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................AAGCTCTACCCAAACTCAC--T...................................................................................................................................................................................................................................................................................................................................2011.001000010
..................................................................................................................GAAAGCTCTACCCAAACTCT.......................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................CGAAAGCTCTACCCAAACTCAC--T...................................................................................................................................................................................................................................................................................................................................2311.001000100
..................................................................................................................GAAAGCTCTACCCAAACTCAT--CC..................................................................................................................................................................................................................................................................................................................................2320.501000010
droGri2
TGCTGAGCGCCATGAAAAATATTATCCCTGCTGTGCGGAACCGTATCCGGGTGAGTTTCGTAGGGTT-TAAAGCAACAAAACTTTGCTCGCCGACAC----GC-----GTACGCGAAAGCTCTACCCAAACTCAC--TATGGAAA------CCCGTATC---C-----CAA--CCC--CCC-AAA----TAATC-----------------CAAC-----CAATATCCCAATCCTGGCCTGT---------------TCGTTCTCGTGTTCTTTGCTTTTCTCTT-------CTGCT-------------------------------CTTTCTTGCCTGCTGCGAT------------T----GCTGCTTGTTT--TG------------------CTAAAATGTT-TAGACATATTCTTCAATATTACGCTGAGACGAAAGACACTCTTCTACACGGTASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................................................................................GAAAGCTCTACCCAAACTCAC--T...................................................................................................................................................................................................................................................................................................................................22116.0016160
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TA..................................................................................................................................................................................................................................................................................................................................2312.00220
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TAT.................................................................................................................................................................................................................................................................................................................................2411.00110
...................................................................................................................AAAGCTCTACCCAAACTCAC--T...................................................................................................................................................................................................................................................................................................................................2111.00110
..................................................................................................................GAAAGCTCTACCCAAACTCAC--TATC................................................................................................................................................................................................................................................................................................................................2511.00110
...................................................................................................................AAAGCTCTACCCAAACTCAC--TT..................................................................................................................................................................................................................................................................................................................................2211.00110
..................................................................................................................GAAAGCTCTACCCAAACTCAC--....................................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 10/20/2015 at 07:36 PM