ID:

der_24

 Coordinate:

scaffold_4929:5729776-5729835 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.8

Flybase annnotation

Antisense to intron [Dere\GG24289-in]; utr5 [utr5_plus_811]; utr5 [utr5_plus_810]

No Repeatable elements found

Sense Strand Reads

AAGAACTCGACTCGGCTCGAATCCCAGTACCTCCTTGGGGCACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTATTCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCCCACGCAACAGTGACAACGATAACATCGTTGGGCCACAC

***********************************.((((((..((((....(((((((..(((((((.((((............)))).)))))))..)))))))....))))..))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V107

male body		 V108

head

 V060

head

 M055

female body

 M057

embryo

 V040

embryo
..................................................ATAAGGTAGAAAAATTGTTGTC........................................................................................ 22 0 1 7500.00 7500 6700 729 35 22 11 3
..................................................ATAAGGTAGAAAAATTGTTGT......................................................................................... 21 0 1 605.00 605 549 51 1 3 1 0
..................................................ATAAGGTAGAAAAATTGTTGTCT....................................................................................... 23 0 1 300.00 300 258 31 4 7 0 0
..................................................ATAAGGTAGAAAAATTGTTG.......................................................................................... 20 0 1 82.00 82 71 9 1 1 0 0
..................................................ATAAGGGAGAAAAATTGTTGTC........................................................................................ 22 1 1 77.00 77 77 0 0 0 0 0
...................................................TAAGGTAGAAAAATTGTTGTCT....................................................................................... 22 0 1 68.00 68 65 2 0 1 0 0
..................................................ATAAGGCAGAAAAATTGTTGTC........................................................................................ 22 1 1 35.00 35 31 4 0 0 0 0
..................................................ATAAGGAAGAAAAATTGTTGTC........................................................................................ 22 1 1 25.00 25 24 1 0 0 0 0
..................................................ATAATGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 22.00 22 14 8 0 0 0 0
..................................................AGAAGGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 20.00 20 18 0 0 0 2 0
..................................................ATAAGGTAGAAAAATTTTTGTC........................................................................................ 22 1 1 19.00 19 12 7 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGTCA....................................................................................... 23 1 1 19.00 19 18 1 0 0 0 0
..................................................ATAAGGTAGAGAAATTGTTGTC........................................................................................ 22 1 1 9.00 9 9 0 0 0 0 0
..................................................ATAGGGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 9.00 9 7 2 0 0 0 0
..................................................ATAAGGTGGAAAAATTGTTGTC........................................................................................ 22 1 1 8.00 8 7 1 0 0 0 0
..................................................ATAAGGTATAAAAATTGTTGTC........................................................................................ 22 1 1 7.00 7 2 5 0 0 0 0
..................................................ATAAGGTAAAAAAATTGTTGTC........................................................................................ 22 1 1 7.00 7 6 0 0 1 0 0
...................................................TAAGGTAGAAAAATTGTTGTC........................................................................................ 21 0 1 7.00 7 5 1 0 1 0 0
..................................................GTAAGGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 7.00 7 5 2 0 0 0 0
..................................................ATAAGGTCGAAAAATTGTTGTC........................................................................................ 22 1 1 6.00 6 6 0 0 0 0 0
..................................................ATAAGGGAGAAAAATTGTTGT......................................................................................... 21 1 1 6.00 6 6 0 0 0 0 0
....................................................AAGGTAGAAAAATTGTTGTC........................................................................................ 20 0 1 6.00 6 6 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTC........................................................................................... 19 1 1 6.00 6 6 0 0 0 0 0
..................................................ATAAGTTAGAAAAATTGTTGTC........................................................................................ 22 1 1 6.00 6 4 2 0 0 0 0
..................................................ACAAGGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 5.00 5 5 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGCTGTC........................................................................................ 22 1 1 4.00 4 3 1 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGCC........................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGTT........................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTATTGTC........................................................................................ 22 1 1 4.00 4 3 1 0 0 0 0
..................................................ATCAGGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 4.00 4 2 2 0 0 0 0
..................................................ATGAGGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 4.00 4 3 1 0 0 0 0
..................................................ATATGGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 4.00 4 2 0 0 0 2 0
..................................................ATAAGGTAGAAAAATTGTTCTC........................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0
..................................................ATAAGGTAGAAGAATTGTTGTC........................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0
..................................................ATAAGATAGAAAAATTGTTGTC........................................................................................ 22 1 1 3.00 3 2 1 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTTTC........................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGTA........................................................................................ 22 1 1 3.00 3 1 2 0 0 0 0
..................................................ATAAGGTAGAAACATTGTTGTC........................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGTCC....................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................ATAAGCTAGAAAAATTGTTGTC........................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0
..................................................ATAAGGTAGAAAAATCGTTGTC........................................................................................ 22 1 1 3.00 3 2 1 0 0 0 0
..................................................ATAAGGTAGAAAAACTGTTGTC........................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTCGTC........................................................................................ 22 1 1 3.00 3 1 2 0 0 0 0
..................................................ATAAGGTACAAAAATTGTTGTC........................................................................................ 22 1 1 3.00 3 2 1 0 0 0 0
..................................................ATAAGGTAGACAAATTGTTGTC........................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0
..................................................GTAAGGTAGAAAAATTGTTGTCT....................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................ATAAGTTAGAAAAATTGTTGTCT....................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGAC........................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
.....................................................ATGTAGAAAAATTGTTGTC........................................................................................ 19 1 1 2.00 2 2 0 0 0 0 0
..................................................ATAAGGAAGAAAAATTGTTGT......................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................ATAAGGGAGAAACATTGTTGTC........................................................................................ 22 2 1 2.00 2 1 1 0 0 0 0
..................................................ATAGGGTAGAAAAATTGTTGTCT....................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCT....................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGATGTC........................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
..................................................ATAAAGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
..................................................ATAAGGTAGAAAAGTTGTTGTC........................................................................................ 22 1 1 2.00 2 1 1 0 0 0 0
..................................................ATAAGGTAGAAAGATTGTTGT......................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................ATAAGGCAGAAAAATTGTTGT......................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..................................................AGAAGGTAGAAAAATTGTTGT......................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................ATAAGGTAGAATAATTGTTGTC........................................................................................ 22 1 1 2.00 2 1 0 0 1 0 0
..................................................ATAATGTAGAAAAATTGTTGT......................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..................................................ATAAGGTAGTAAAATTGTTGTC........................................................................................ 22 1 1 2.00 2 1 1 0 0 0 0
.................................................CATAAGGTAGAAAAATTGTTGTC........................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0
..................................................ATAAGGTAGAAACATTGTTGT......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGCCT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................ATGAGGGAGAAAAATTGTTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTAT......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTCTTGTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAGAAATTGTT........................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGATAAATTGTTGTC........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................ATAAGGGAGAAAAATTGTTGTCT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGACAAACTGTTGTC........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
..................................................ATAACGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGCAGAAAAATTGCTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
.....................................................ATGTAGAAAAATTGTTGTCT....................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................CTAAGGAAGAAAAATTGTTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATCGTTG.......................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
...................................................TAAGGTAGAAAAATTGTTGTCTT...................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
..................................................ATAAGGTAGAAAGATTGTTGTC........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................ATAAGGTAGAAAATTTGTTGTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................CTGCAGTTTAACTATCTTTCA................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGC......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGTTT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTGGAAAGATTGTTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGTAGAAAAATTGTTGT......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTTGAAAAATTGTTGTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGACAAATTGTTGT......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGATGT......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAATGTAGAAAAATTATTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAACTTTTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGTCTC...................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGTGA....................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAATGTAGAAAAATTGTTGTCT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................ATCAGGTAGAAAAATTGTTGT......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................CTAAGGTAGAAAAATTCTTGT......................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTCTCA....................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATCGTTTTC........................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0
..................................................ATAAGGTAGAAATATTGTTGTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ATACGGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................CTAAGGCAGAAAAATTGTTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTTTTGT......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGT......................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGATG.......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................ACAATGTAGAAAAATTGTTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTGGAAAAATTGTTGT......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAAGTGTTGTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CTAAGGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................ATAAGGTAGAAAACTTGTTGTC........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................ATAAGGTAGAAAAATTGGTGTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAATGTAGAAAAATTTTTGTC........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
..................................................ATAAGGTTGAAAAATTGTTGT......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGTAAAATTGTTGT......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGTAGAAAAATTGTTGTCTTC..................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................AGAAGGTAGAAAAATTGTTG.......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGGAGAAAATTTGTTGT......................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................ATTAGGTAGAAAAATTGTTGTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................AGAAGGTAGAAAAATTGTTGTCT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTT.......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGCAGAAAAATTGTTGTCT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGGAGAAAAATTGTTG.......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................AGAAGGGAGAAAAATTGTTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTCGAAAAATTGTTGTCT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGCAGAAAAATTGTTGTCT....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAAGTAGAGATATTGTTGTC........................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0
...................................................GAAGGTAGAAAAATTGTTGTCT....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTATC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTATTG.......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................AGAAGGTAGAGAAATTGTTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTGGTC.......................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTC...................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGTTAGAAAAATTGTTGT......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................AGAAGTTAGAAAAATTGTTGTC........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATGGTTGTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...................................................AAAGGTAGAAAAATTGTTGT......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGTAGAAAAATTGTTGTCA....................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..................................................ATAAGGAAGAAAAATTGTTGTCA....................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGGAAGAAAAATTGTTGTCT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................AAAGGTAGAAAAATTGTTGTC........................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..................................................ATAAGGTAGGAAAATTGTTGTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ATAAGAGAGAGAAATTGTTGTC........................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0
..................................................ATCAGGTAGACAAATTGTTGTC........................................................................................ 22 2 2 0.50 1 0 0 1 0 0 0
..................................................ATAAGGCAGACAAATTCTTGTC........................................................................................ 22 3 4 0.25 1 0 1 0 0 0 0
...................................................ATAAGTAGAAAAATTGTTGTCT....................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0
..................................................ATAAGGTAGAAAAATTTGT........................................................................................... 19 2 11 0.18 2 2 0 0 0 0 0
..................................................ATAAGGTAGAAAATTTGTC........................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0
...................................................ATAAGTAGAAAAATTGTTGTC........................................................................................ 21 3 15 0.07 1 1 0 0 0 0 0
..............GCTCGGATCCCAGAACGTC............................................................................................................................... 19 3 16 0.06 1 0 0 0 1 0 0

Anti-sense strand reads

TTCTTGAGCTGAGCCGAGCTTAGGGTCATGGAGGAACCCCGTGAGTTCGATATTCCATCTTTTTAACAACAGAAGGTGTGATAAGCCTGACGTCAAATTGATAGAAAGTTAAACAAACGGGGGTGCGTTGTCACTGTTGCTATTGTAGCAACCCGGTGTG

************************************.((((((..((((....(((((((..(((((((.((((............)))).)))))))..)))))))....))))..))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body
.................................................................................................................................GTCATTGTTGCTAGAGTAG............ 19 3 19 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4929:5729726-5729885 + der_24 candidate-rescued A-AGAA-CTCGACTC-G-----GCT-CGAATC--C------------CA-GTACCT----CCT-TGGGGCACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTAT-T----------------CGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCCC--ACGCAACAG------------------------------------------TGACAAC---GATAAC--A------------------------TCGTT---------------------------------------------GGGCCACA----------C
droYak3 2L:13551891-13552050 - dya_92 candidate-rescued A-AGAA-CTCGACTC-G-----ACT-CGAATC--C------------AA-CCAACT----TCA-TGGGGCACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTAT-T----------------CAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCCC--ACGCAACAG------------------------------------------TGATAAT---GATAAC--A------------------------TCGTT---------------------------------------------GGGCCACA----------C
droSec2 scaffold_5:3719005-3719166 + dse_179 candidate-rescued A-GGAA-CTCGACTC-G-----ACT-TGAATCTAC------------AA-CTACCT----CGA-TGGGGCATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT-T----------------CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCCC--ATGCAACAG------------------------------------------TGGTAGT---GATAAC--A------------------------TCGTT---------------------------------------------GGACCAGA----------C
droSim2 2l:5446017-5446178 + dsi-mir-962 Known_mirbase A-GGAA-CTCGACTC-G-----ACT-TGAATCTAC------------AA-CTACCT----CGA-TGGGGCGCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT-T----------------CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCCC--CTGCAACAG------------------------------------------TGATAGT---GATAAC--A------------------------TCGTT---------------------------------------------GGACCAGA----------C
dm3 chr2L:5641264-5641427 + dme-mir-962 Known_mirbase A-AGAACTTGGACTC-G-----ACT-TGAATT--C------------AA-CTACTT----CGA-TGGGGCACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTAT-T----------------CAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCCC--ATGCAACAG------------------------------------------TGATAGTAGTGATAAA--A------------------------TCGTT---------------------------------------------GGACCAGA----------C
droEug1 scf7180000409063:317577-317735 + A-CAAA-CTCGACTT-C--AAAACC-CAAACC--C------------AA-CTTCCT----CGC-CGGGGCACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGCGTT-C----------------TAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCCC--ACGCAACCG------------------------------------------GGATACC---GATAAC--G----------------------------T---------------------------------------------GGACATTA----------C
droBia1 scf7180000302422:3830819-3830973 + A-CAAA-CTCGACCC-A--A--------AGGC--C------------AA-CCAACC----CGT--CGGGCACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTCTAT-T----------------CAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCCC--ATGCATCAG------------------------------------------TGATAAT---GATAAC--A------------------------TCGCT---------------------------------------------GGACATAA----------C
droTak1 scf7180000415871:385556-385710 + A-TAAA-CTCGACTT-A--A--------AACC--C------------AA-CCAACT----CGA-CGGGGCACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTCAAT-T----------------CAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCCC--ACGCAACAG------------------------------------------TGATAAT---GATAAG--A------------------------TCGTT---------------------------------------------GGACG-TA----------C
droEle1 scf7180000490753:30460-30604 + A-TAAA-CTCGA-----------------ACC--C------------AA-TTACCT----C----GGGGCACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CACTAC-T----------------CAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC-C--ACGCAACAG------------------------------------------TGATAAT---GATAGC--A------------------------TCGTT---------------------------------------------TGGCATTA----------C
droRho1 scf7180000778253:33712-33865 - A-TAAA-CTCGGCTT-T--G--------AGTT--C------------AA-CTACCT----CCA-CGGGGCACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATACTAC------------------TGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC-C--ACGCAACAG------------------------------------------TGATAAT---GATAAC--A------------------------TCGTT---------------------------------------------GGACATTA----------C
droFic1 scf7180000453932:197419-197570 - A-CAAA-CTCGGCTC-G--G--------AAGC--C------------AT-CC--CC----CCA-CTGGGCAGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTACAT-C----------------CAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCCC--ACGCAACAA-------------------------------------------GATAGT---GATTAC---------------------------CCGAT---------------------------------------------GGACATTT----------C
droKik1 scf7180000302389:430811-430974 - A-CAAA-CTCGTCTC-G--GA-ACT------C--CA-ACAT-CCTGGAA-CTCCCT----GCC-CAAGGCACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTCTAAGC---------------TCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCCC--ACGCAACAG------------------------------------------TGATAAT---GTTAAC--A------------------------T-------------------------------------------------GGCCCGAA----------C
droAna3 scaffold_12916:11085074-11085214 + dan_24 confident A-TACG-CTCGACTT-T--G--------GGCC--C------------AA-CCACCT----GGCCGAGGGCACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCAA-A----------------TAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCCC--AAGCAACAA------------------------------------------TGATAAC---AGTGA-------------------------------------------------------------------------------------------------
droBip1 scf7180000396572:742823-742972 + A-TACA-CACGACTT-T--G--------GGCC--C------------AA-CCACCT----GGTCGGGGGCACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTCCAA-A----------------TAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCTC--AAGCAACCA------------------------------------------TGATAAT---AATAAG--C------------------------TCATC----------------------------------------------------A----------G
dp5 4_group4:3182153-3182363 - dps-mir-2509 Known_mirbase AATGAA-CTCGACTC-G--AGTGCCACAAATG--CC-ACAT-GATGCA-------------AA-TGGAGCAGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTATTC----------------TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGCCAACAGCAACAG-------------------C-TACAAAACGAGTAACGAGGAGAGATAAT---GATCAT--G------------------------TCGTTTCATTTTGGTTAGTATTATTAACACAAA-----------------GGGTCTCG----------C
droPer2 scaffold_10:2201105-2201294 - dpe_318 candidate-rescued AATGAA-CTCGACTC-G--AGTGCCACAAATG--CC-ACAT-GATGCA-------------AA-TGGAGCAGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTATTC----------------TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGCCAACAGCAACAG-------------------C-TACAAAACGAGTAACGAGGAGAGATAAT---GACCAT--G------------------------TCGTTTCATTTT--------------------------------------GGTTAGTA----------T
droWil2 scf2_1100000004521:8625836-8626042 - dwi_150 confident A-TAAA-CCTGGCTT-ACAAAAGCTATAATTG--CTGAAATGGATACACGTTTTCTATTTAAT-AAGGACCCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATTT---GTAACAA-TTGT----TAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCA-CATGCAACAA-------------------CATATAATACAATC-AAACAAAATGATAAA--------C--A------------------------TCATA---------------------------------------------ATGC---C----------C
droVir3 scaffold_12963:3615442-3615646 + dvi-mir-962 Known_mirbase -----------------------------------------------------------------------CTCAAATTATAAGGTAGAGAAATTGTTGTCTACTT-TACAT-ATG--------G----TGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCAA--ATGCAACGGAACCATTTTGGAGGAACATCATAT-TTAGAAT--AAGCCACATGATAGG-----CAGCACATTTAGCATTTGAATGCCGGACTGCTCAA-----------------------------CGATATCATCAAGGAAC----CGAAGGGAGATTATC
droMoj3 scaffold_6500:14018353-14018470 + dmo_149 candidate-rescued T-CGTA-CTCG-----------------------------------------------------TAGAGCGCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCAT---ATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTAA--ATGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:3147207-3147356 + dgr_37 candidate-rescued C--AAA-CTAAGAGCAG-----G-T-TACTTTCAT------------AA-CACACT----C---AAGAGCTCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATAA------------------AAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCAA--ATGCAACGG--------------------------------------------ACAAT---GC-------------------------------CCAA-----------------------------CAACA----------------TTAT----------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
A-AGAA-CTCGACTC-G-----GCT-CGAATC--C------------CA-GTACCT----CCT-TGGGGCACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTAT-T----------------CGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCCC--ACGCAACAG------------------------------------------TGACAAC---GATAAC--A------------------------TCGTT---------------------------------------------GGGCCACA----------CSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...............................................................................ATAAGGTAGAAAAATTGTTGTC.........................................................................................................................................................................................................................................2217500.007500221135367007290
...............................................................................ATAAGGTAGAAAAATTGTTGT..........................................................................................................................................................................................................................................211605.006053110549510
...............................................................................ATAAGGTAGAAAAATTGTTGTCT........................................................................................................................................................................................................................................231300.003007040258310
...............................................................................ATAAGGTAGAAAAATTGTTG...........................................................................................................................................................................................................................................20182.008210107190
................................................................................TAAGGTAGAAAAATTGTTGTCT........................................................................................................................................................................................................................................22168.006810006520
...............................................................................ATAAGGTAGAAAAATTGTTGTCA........................................................................................................................................................................................................................................23119.001900001810
................................................................................TAAGGTAGAAAAATTGTTGTC.........................................................................................................................................................................................................................................2117.0071000510
.................................................................................AAGGTAGAAAAATTGTTGTC.........................................................................................................................................................................................................................................2016.0060000600
...............................................................................ATAAGGTAGAAAAATTGTC............................................................................................................................................................................................................................................1916.0060000600
...............................................................................ATAAGGTAGAAAAATTGTTGTT.........................................................................................................................................................................................................................................2214.0040000400
...............................................................................ATAAGGTAGAAAAATTGTTGTA.........................................................................................................................................................................................................................................2213.0030000120
...............................................................................ATAAGGTAGAAAAATTGTTGTCC........................................................................................................................................................................................................................................2313.0030000300
................................................................................TAAGGTAGAAAAATTGTTGTCTT.......................................................................................................................................................................................................................................2311.0010000010
......................................................................................................................................CTGCAGTTTAACTATCTTTCA...................................................................................................................................................................................2111.0010000100
...............................................................................ATAAGGTAGAAAAATTGTTGC..........................................................................................................................................................................................................................................2111.0010000100
................................................................................TAAGGTAGAAAAATTGTTGT..........................................................................................................................................................................................................................................2011.0010000100
...............................................................................ATAAGGTAGAAAAATTGTTGTCTC.......................................................................................................................................................................................................................................2411.0010000100
...............................................................................ATAAGGTAGAAAAATTGTTGTGA........................................................................................................................................................................................................................................2311.0010000100
................................................................................TAAGGTAGAAAAATTGTTGTCTTC......................................................................................................................................................................................................................................2411.0010000100
...............................................................................ATAAGGTAGAAAAATTGTTT...........................................................................................................................................................................................................................................2011.0010000100
................................................................................TAAGGTAGAAAAATTGTTGTCA........................................................................................................................................................................................................................................2211.0011000000
droYak3
A-AGAA-CTCGACTC-G-----ACT-CGAATC--C------------AA-CCAACT----TCA-TGGGGCACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTAT-T----------------CAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCCC--ACGCAACAG------------------------------------------TGATAAT---GATAAC--A------------------------TCGTT---------------------------------------------GGGCCACA----------CSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...............................................................................ATAAGGTAGAGAAATTGTTGTC.........................................................................................................................................................................................................................................2211280.001280305123111611580000
...............................................................................ATAAGGTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................231633.00633131440026000000
...............................................................................ATAAGGTAGAGAAATTGTTGT..........................................................................................................................................................................................................................................211129.0012911810021070000
................................................................................TAAGGTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................22145.0045020000430000
...............................................................................ATAAGGTAGAGAAATTGTTG...........................................................................................................................................................................................................................................20123.0023020001200000
...............................................................................ATAAGGTAGAGAAATTGTTGTCC........................................................................................................................................................................................................................................2315.00520100020000
...............................................................................ATAAGGTAGAGAAATTGTTGTCA........................................................................................................................................................................................................................................2314.00401000030000
................................................................................TAAGGTAGAGAAATTGTTGTC.........................................................................................................................................................................................................................................2112.00202000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTT.......................................................................................................................................................................................................................................2411.00100000010000
................................................................................TAAGGTAGAGAAATTGTTGTCTA.......................................................................................................................................................................................................................................2311.00100000010000
...............................................................................ATAAGGTAGAGAAATTGT.............................................................................................................................................................................................................................................1811.00100001000000
..............................................................................TATAAGGTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................2411.00100000010000
.................................................................................AAGGTAGAGAAATTGTTGTC.........................................................................................................................................................................................................................................2011.00100100000000
...............................................................................ATAAGGTAGAGAAATTGTTGTT.........................................................................................................................................................................................................................................2211.00100100000000
..................................................................................AGGTAGAGAAATTGTTGTC.........................................................................................................................................................................................................................................1911.00100000010000
......................................................................................................................................CATCAGTTTAACTATCTTTCA...................................................................................................................................................................................2111.00101000000000
.................................................................................AAGGTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................2111.00100000010000
...............................................................................ATAAGGTAGAGAAATTGTT............................................................................................................................................................................................................................................1911.00100000010000
...............................................................................ATAAGGTAGAGAAATTGTTGTCG........................................................................................................................................................................................................................................2311.00110000000000
droSec2
A-GGAA-CTCGACTC-G-----ACT-TGAATCTAC------------AA-CTACCT----CGA-TGGGGCATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT-T----------------CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCCC--ATGCAACAG------------------------------------------TGGTAGT---GATAAC--A------------------------TCGTT---------------------------------------------GGACCAGA----------CSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...............................................................................ATAAGGTAGAGAAATTGATGTT.........................................................................................................................................................................................................................................221819.0081976491576
...............................................................................ATAAGGTAGAGAAATTGATGTTGT.......................................................................................................................................................................................................................................241764.007642697614
...............................................................................ATAAGGTAGAGAAATTGATGTTGTC......................................................................................................................................................................................................................................251754.0075435422009
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCT.....................................................................................................................................................................................................................................261486.0048603521304
...............................................................................ATAAGGTAGAGAAATTGATGTTG........................................................................................................................................................................................................................................231393.003934376103
...............................................................................ATAAGGTAGAGAAATTGATGT..........................................................................................................................................................................................................................................21128.002822240
................................................................................TAAGGTAGAGAAATTGATGTTGTCT.....................................................................................................................................................................................................................................2519.0091620
...............................................................................ATAAGGTAGAGAAATTGATG...........................................................................................................................................................................................................................................2017.0070700
...............................................................................ATAAGGTAGAGAAATTGATGTTT........................................................................................................................................................................................................................................2316.0060600
...............................................................................ATAAGGTAGAGAAATTGATGTTGTT......................................................................................................................................................................................................................................2516.0060510
................................................................................TAAGGTAGAGAAATTGATGTTGTC......................................................................................................................................................................................................................................2414.0040400
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCTT....................................................................................................................................................................................................................................2714.0040220
................................................................................TAAGGTAGAGAAATTGATGTTGT.......................................................................................................................................................................................................................................2314.0040310
................................................................................TAAGGTAGAGAAATTGATGTTG........................................................................................................................................................................................................................................2213.0030300
...............................................................................ATAAGGTAGAGAAATTGATGTTGG.......................................................................................................................................................................................................................................2411.0010100
...............................................................................ATAAGGTAGAGAAATTGATGTTGTTCT....................................................................................................................................................................................................................................2711.0010001
................................................................................TAAGGTAGAGAAATTGATGTT.........................................................................................................................................................................................................................................2111.0010010
...............................................................................ATAAGGTAGAGAAATTGA.............................................................................................................................................................................................................................................1811.0010010
...............................................................................ATAAGGTAGAGAAATTGATGTTGTA......................................................................................................................................................................................................................................2511.0010100
...............................................................................ATAAGGTAGAGAAATTGATGTTGA.......................................................................................................................................................................................................................................2411.0010100
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCTA....................................................................................................................................................................................................................................2711.0010100
...............................................................................ATAAGGTAGAGAAATTGATGTC.........................................................................................................................................................................................................................................2211.0010100
..................................................................................AGGTAGAGAAATTGATGTT.........................................................................................................................................................................................................................................1911.0010100
droSim2
A-GGAA-CTCGACTC-G-----ACT-TGAATCTAC------------AA-CTACCT----CGA-TGGGGCGCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT-T----------------CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCCC--CTGCAACAG------------------------------------------TGATAGT---GATAAC--A------------------------TCGTT---------------------------------------------GGACCAGA----------CSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...............................................................................ATAAGGTAGAGAAATTGATGTTGT.......................................................................................................................................................................................................................................2415415.00541504003202837001340265145000
...............................................................................ATAAGGTAGAGAAATTGATGTT.........................................................................................................................................................................................................................................2214495.004495122039713672101683154076000
...............................................................................ATAAGGTAGAGAAATTGATGTTG........................................................................................................................................................................................................................................2313519.0035190201641101300570153356000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTC......................................................................................................................................................................................................................................2512980.00298002431956512239001226142444000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCT.....................................................................................................................................................................................................................................261663.0066305221101637109515452000
...............................................................................ATAAGGTAGAGAAATTGATGT..........................................................................................................................................................................................................................................211241.00241020047333001701165000
...............................................................................ATAAGGTAGAGAAATTGATG...........................................................................................................................................................................................................................................201190.00190030011410000100062000
...............................................................................ATAAGGTAGAGAAATTGATGTTT........................................................................................................................................................................................................................................231168.001680000001100200164000
...............................................................................ATAAGGTAGAGAAATTGA.............................................................................................................................................................................................................................................18199.0099000095000002002000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTT......................................................................................................................................................................................................................................25191.0091010000000000090000
...............................................................................ATAAGGTAGAGAAATTGATGTTA........................................................................................................................................................................................................................................23188.0088000000000000088000
...............................................................................ATAAGGTAGAGAAATTGAT............................................................................................................................................................................................................................................19182.0082000074200001005000
.....................................................................................................................................ACTTCAGTTTCATTGCCTTTCA...................................................................................................................................................................................22161.00610100380100000021000
...............................................................................ATAAGGTAGAGAAATT...............................................................................................................................................................................................................................................16138.0038000000000038000000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCA.....................................................................................................................................................................................................................................26130.0030000000000010029000
.....................................................................................................................................ACTTCAGTTTCATTGCCTTTC....................................................................................................................................................................................21119.0019000018000000001000
......................................................................................................................................CTTCAGTTTCATTGCCTTTCA...................................................................................................................................................................................21118.0018030040010000010000
.....................................................................................................................................ACTTCAGTTTCATTGCCT.......................................................................................................................................................................................18117.0017000016100000000000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTA......................................................................................................................................................................................................................................25117.0017000000000000017000
................................................................................TAAGGTAGAGAAATTGATGTTGTCT.....................................................................................................................................................................................................................................25115.0015020000000020011000
...............................................................................ATAAGGTAGAGAAATTGATGTTGA.......................................................................................................................................................................................................................................24114.0014000000000000014000
......................................................................................................................................CTTCAGTTTCATTGCCTTTCAA..................................................................................................................................................................................22112.001201005001000005000
................................................................................TAAGGTAGAGAAATTGATGTTG........................................................................................................................................................................................................................................22110.001000000000001009000
.....................................................................................................................................ACTTCAGTTTCATTGCCTTTCAA..................................................................................................................................................................................23110.001000000001000009000
...............................................................................ATAAGGTAGAGAAATTGATGTA.........................................................................................................................................................................................................................................22110.0010000000000000010000
................................................................................TAAGGTAGAGAAATTGATGTTGTC......................................................................................................................................................................................................................................2419.00900000010000008000
................................................................................TAAGGTAGAGAAATTGATGTTGT.......................................................................................................................................................................................................................................2319.00900000001001007000
...............................................................................ATAAGGTAGAGAAAT................................................................................................................................................................................................................................................1518.00800000000008000000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCC.....................................................................................................................................................................................................................................2617.00705100000000001000
...............................................................................ATAAGGTAGAGAAATTGATGTTAA.......................................................................................................................................................................................................................................2416.00600000000000006000
...............................................................................ATAAGGTAGAGAAATTGATGTG.........................................................................................................................................................................................................................................2216.00600000000001005000
...............................................................................ATAAGGTAGAGAAATTGATGTTGC.......................................................................................................................................................................................................................................2415.00502000000001002000
......................................................................................................................................CTTCAGTTTCATTGCCTT......................................................................................................................................................................................1815.00500005000000000000
.....................................................................................................................................ACTTCAGTTTCATTGCCTT......................................................................................................................................................................................1915.00500005000000000000
.....................................................................................................................................ACTTCAGTTTCATTGCCTTT.....................................................................................................................................................................................2015.00500003000000002000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCTT....................................................................................................................................................................................................................................2714.00401000000000003000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCTA....................................................................................................................................................................................................................................2714.00400001000000003000
...............................................................................ATAAGGTAGAGAAATTGATGTTGG.......................................................................................................................................................................................................................................2414.00401000000000003000
................................................................................TAAGGTAGAGAAATTGATGTT.........................................................................................................................................................................................................................................2113.00300000000000003000
...............................................................................ATAAGGTAGAGAAATTG..............................................................................................................................................................................................................................................1713.00300000000002001000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCTAA...................................................................................................................................................................................................................................2813.00300000000000003000
...............................................................................ATAAGGTAGAGAAATTGATGTTC........................................................................................................................................................................................................................................2313.00300000000001002000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTG......................................................................................................................................................................................................................................2513.00300000000000003000
...............................................................................ATAAGGTAGAGAAATTGAAA...........................................................................................................................................................................................................................................2013.00300000000000003000
......................................................................................................................................CTTCAGTTTCATTGCCTTTC....................................................................................................................................................................................2013.00300001000000002000
.................................................................................AAGGTAGAGAAATTGATG...........................................................................................................................................................................................................................................1812.00200002000000000000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTAA.....................................................................................................................................................................................................................................2612.00200000000000002000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCG.....................................................................................................................................................................................................................................2612.00202000000000000000
..................................................................................AGGTAGAGAAATTGATGTT.........................................................................................................................................................................................................................................1912.00200000000000002000
...............................................................................ATAAGGTAGAGAAATTGATA...........................................................................................................................................................................................................................................2012.00200000000000002000
...............................................................................ATAAGGTAGAGAAATTGATT...........................................................................................................................................................................................................................................2012.00200000000000002000
..................................................................................AGGTAGAGAAATTGATGTTGT.......................................................................................................................................................................................................................................2112.00200000000000002000
................................................................................TAAGGTAGAGAAATTGATGTTGTA......................................................................................................................................................................................................................................2412.00200000000000002000
...............................................................................ATAAGGTAGAGAAATTGATGTTGAAA.....................................................................................................................................................................................................................................2611.00100000000000001000
.................................................................................AAGGTAGAGAAATTGATGTTG........................................................................................................................................................................................................................................2111.00100001000000000000
...............................................................................ATAAGGTAGAGAAATTGATGTTGTCTTT...................................................................................................................................................................................................................................2811.00100000000000001000
......................................................................................AGAGAAATTGATGTTGTCT.....................................................................................................................................................................................................................................1911.00100000000001000000
................................................................................TAAGGTAGAGAAATTGATG...........................................................................................................................................................................................................................................1911.00100001000000000000
...............................................................................ATAAGGTAGAGAAATTGATGTTAG.......................................................................................................................................................................................................................................2411.00100000000000001000
......................................................................................AGAGAAATTGATGTTG........................................................................................................................................................................................................................................1611.00100000000001000000
......................................................................................................................................CTTCAGTTTCATTGCCTTTCAAA.................................................................................................................................................................................2311.00100000000000001000
.................................................................................AAGGTAGAGAAATTGATGTTGTCAT....................................................................................................................................................................................................................................2511.00100000000000001000
...............................................................................ATAAGGTAGAGAAATTGATGTTGGAC.....................................................................................................................................................................................................................................2611.00100000000000001000
......................................................................................AGAGAAATTGATGTTGT.......................................................................................................................................................................................................................................1711.00100000000001000000
...............................................................................ATAAGGTAGAGAAATTGATGTGT........................................................................................................................................................................................................................................2311.00100000000001000000
......................................................................................AGAGAAATTGATGTTGTC......................................................................................................................................................................................................................................1811.00100000000001000000
.................................................................GGGGCGCTCAGGCTATAAGGTA.......................................................................................................................................................................................................................................................2211.00100001000000000000
................................................................................TAAGGTAGAGAAATTGATGTTGTCC.....................................................................................................................................................................................................................................2511.00101000000000000000
.................................................................................................................T----------------CAGACTTCAGTTTCATTGCCT.......................................................................................................................................................................................2211.00100100000000000000
.....................................................................................TAGAGAAATTGATGTTGTC......................................................................................................................................................................................................................................1911.00100000000001000000
.......................................................................................................................................TTCAGTTTCATTGCCTTTCA...................................................................................................................................................................................2011.00100000000000001000
.................................................................................AAGGTAGAGAAATTGATGTTGTC......................................................................................................................................................................................................................................2311.00100000000000001000
..................................................................................AGGTAGAGAAATTGATGTTGTC......................................................................................................................................................................................................................................2211.00100000000001000000
......................................................................................................................................CTTCAGTTTCATTGCCTTT.....................................................................................................................................................................................1911.00100001000000000000
.....................................................................................TAGAGAAATTGATGTT.........................................................................................................................................................................................................................................1611.00100000000001000000
.......................................................................................GAGAAATTGATGTTGTC......................................................................................................................................................................................................................................1711.00100000000001000000
......................................................................................................................................CTTCAGTTTCATTGCCTTTCT...................................................................................................................................................................................2111.00100000000000001000
.....................................................................................TAGAGAAATTGATGTTGTCT.....................................................................................................................................................................................................................................2011.00100000000001000000
..................................................................................AGGTAGAGAAATTGATGTTGTCATA...................................................................................................................................................................................................................................2511.00100000000000001000
.....................................................................................TAGAGAAATTGATGTTGT.......................................................................................................................................................................................................................................1811.00100000000001000000
...............................................................................ATAAGGTAGAGAAATTGAA............................................................................................................................................................................................................................................1911.00100000000000001000
..............................................................................TATAAGGTAGAGAAATTGATGT..........................................................................................................................................................................................................................................2211.00100000000001000000
.........................................................................................GAAATTGATGTTGTC......................................................................................................................................................................................................................................1520.50100000000001000000
...............................................................................ATAAGGTAGAGAAATA...............................................................................................................................................................................................................................................1660.17100000000001000000
dm3
A-AGAACTTGGACTC-G-----ACT-TGAATT--C------------AA-CTACTT----CGA-TGGGGCACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTAT-T----------------CAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCCC--ATGCAACAG------------------------------------------TGATAGTAGTGATAAA--A------------------------TCGTT---------------------------------------------GGACCAGA----------CSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...............................................................................ATAAGGTAGAGAAATTGATGCTGTC......................................................................................................................................................................................................................................25141535.00415350000050001120100000002223000000000000431703330496035158362044279419335115852500000000000000000000000122113033000009001380223004291008052245002700000010000000232100005170044752063902033121057747347500000014032015020210113410027164040140039087659479734802711230056830001531009591004994357960158752611624668122546640831901300000960400160901070000012003001001100100155115816732017723804001337535481132756402810537133563701788010450015150524371212103613044919953116192249348647171550
...............................................................................ATAAGGTAGAGAAATTGATGCTGTCT.....................................................................................................................................................................................................................................26113984.001398400000000000400000000213000000000000155510131320930200121041722816331600000000000000000000000010000000000001002100000030000000001200000000000000000000000200000010018561133268105211116130000000000010000003200110000000068817194223260015711024250100011370300000120821664122806398307114332058420000000110100120470015000000001010000000100143858107969112380000000107423122601218613711215836322883430215641157005010021007121543826505215103400
...............................................................................ATAAGGTAGAGAAATTGATGCTG........................................................................................................................................................................................................................................23112620.001262000000200000400000000301240000000000012491071432871141289410251527228000000000000000000000001001000000000030012003000042000000060000011000000000000000010000011002770832962196271816160000040040410020004600004600013511393212477283200339013284900000923045100177515032172544819112231114150000000000010000027008000000000010000000200594251134790422020002934314239221122191158161179320528200438392004000000101262375643682666113130
...............................................................................ATAAGGTAGAGAAATTGATGCTGT.......................................................................................................................................................................................................................................2417426.0074260000000000010100000005000000000000002527611124651351073924521161300000000000000000000000010100050000003009013130027210020121360029010000000000000000011000010001024632260531113400000005020000000001001107030400382216222750054139180000012274110001001092271183252978284491356530000000001000000012008000000000000000000000774751347247952500000110121788211191429175642197769490034391151000000100014249222128333206100
...............................................................................ATAAGGTAGAGAAATTGATGCT.........................................................................................................................................................................................................................................2212870.0028700000000000000000000011029000000000003141425429430210610127200000000000000000000000001000000000000002002000000001010030000000000000000000000000000000004121591622357700000000000000000001000011000434599368718005202881300000290211004203171313851037144208232800000000000000000100100000000000000000000020922852117000003010136410033862214582171600113031202000000011606119616152301000
...............................................................................ATAAGGTAGAGAAATTGATG...........................................................................................................................................................................................................................................2011202.001202000000000000000000000007400000000000201022012100121417200000000000000000000000000000000000000000200100000000000001000000000000000000000000000000000132243200000000000010000000001000000000020060117323005001461300000124000000001424030121281017000000000000000001003000000000000000000000217100821000000210014220212171615936760003160020000000091232201400010
...............................................................................ATAAGGTAGAGAAATTGATGC..........................................................................................................................................................................................................................................2111111.001111000000000001000000000004100000000000150112114010811090100000000000000000000000000000000000001002001000100000000000000000000000000000001000000000002693525201000000200000010000000000000000110394135300026010190000000000000000164015950625705700000000000000000500100001000000000000000083404010000000000000134610015771716150005812000000000001202884961412000
.....................................................................................................................................ACTTCAGTTTCATTACCTTTCA...................................................................................................................................................................................221745.00745000001000006000000000009700000000000021000110002011110000200000000000000000002222030000000062036103000200200001122110010000000000000000000000000000000430280000000000000000101002401000000000028158000014020000000000000000001300281844573315693400000000000000000000100000000000000000000063500070200000010000100000000150200000000000000000000000100000
................................................................................TAAGGTAGAGAAATTGATGCTGTCT.....................................................................................................................................................................................................................................251608.0060800000000000000000000000000000000000010001011113020030000000000000000000000000000000000000010030000000000000000200000000000000000000000000000000010802200300000000030000000000100000000050037151000060270000000600000000045142031117300000000000000000200000000000000000000000013421101318000000000016003171412121940001730000000000020832571600000
...............................................................................ATAAGGTAGAGAAATTGAT............................................................................................................................................................................................................................................191326.00326000000000000000000000004200000000000000001000001000010000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000141077000026077000000000000000000100002401010000000000000000010000000000000000000000000212000000000100000150000001353600010000000000002020000100000
...............................................................................ATAAGGTAGAGAAATTGATGCTGTT......................................................................................................................................................................................................................................251250.0025000000000000000000000000000000000000000000111000002240000000000000000000000000000000000000000102000000001000000010000000000000000000000000000000000102240001000000000000000000110000000000001509000030500000001000000000111321042010000000000000000000002000000000000000000000240000000000000000021010002710591700072000000000000001100100000
...............................................................................ATAAGGTAGAGAAATTGA.............................................................................................................................................................................................................................................181217.0021700000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000010211000000000000000000000000000001300010027048100070462200000100200002001030001000000000000100000000000000000000000000000000000000000000000010003000000046217000400000000000020160000400000
......................................................................................................................................CTTCAGTTTCATTACCTTTCAA..................................................................................................................................................................................221200.002000000010000000000000000067000000000000000000000000000000000000000000000000000000000000000000000501800000000000006000200000000000000000000000000000001003000000000000000000010320000000000003302800003011000000000000000001000324105083000000000000000000000000000000000000000000160000000000000000010000002030000020000000000000010000000000
......................................................................................................................................CTTCAGTTTCATTACCTTTCA...................................................................................................................................................................................211182.001820000000000000000000000062000000000000010000000001000000000000000000000000000000000000000000000101200000000000000000300000000000000000000000000000000001000000000000000100100000001000000000912710001301800000000000000000020022162044000000000000000000001000000000000000000000070010010000010000000000000111000001000000000000000000000000
................................................................................TAAGGTAGAGAAATTGATGCTGTC......................................................................................................................................................................................................................................241148.001480000000000000000000000000000000000010000010010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001010120000000000001000000000010000000006004070200306000000000000002000000000000210000000000000000000000000000000000000000001603020000000000000100000142583200030000000000000023112900000
...............................................................................ATAAGGTAGAGAAATTGATGCTGTA......................................................................................................................................................................................................................................251142.001420000000000030000000000000000000000000000009011003150000000000000000000000000000000000000000002000000000000000010000000000000000000000000000000000010110100000000000000000000110000000000006070000101000000000000000003000000100000000000000000000010000000000000000000000002001020000000100000100010012671400020000000000001020101000000
................................................................................TAAGGTAGAGAAATTGATGCTG........................................................................................................................................................................................................................................221139.0013900000000000000000000000100000000000010100010010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000060000000000000000000020050900006015000000000000004812300000100000000000000000000010000000000000000000000000401150300000000000000102121353200010000000000000000022300000
.....................................................................................................................................ACTTCAGTTTCATTACCTTTCAA..................................................................................................................................................................................231123.001230000000000010000000000090000000000000000000000000000000000000000000000000000000000000000001007104000101000000040000000000000000000000000000000000000000300000000000000000001200000000000003010000030800000000000000000000010447110165000000000000000000000000000000000000000000050000000000000000000000000010000000000000000000000000100000
.....................................................................................................................................ACTTCAGTTTCATTACCTTTC....................................................................................................................................................................................21191.009100000000000000000000000170000000000000000000000000000000010000000000000000000100000000000000003000000001000000010002000000000000000000000000000000000100100000000000000000000000010000000005070000400000000000000000000100235250571000000000000000000000000000000000000000001100001000000000000000000000120000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGTG......................................................................................................................................................................................................................................25170.00700000000000000000000000000000000000000010015000105000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000020010000000000000000000000010000000002000100000000000000000000000101001100000000000000000000010010000000000000000000001010001000000000000100100001246600000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGTCA.....................................................................................................................................................................................................................................26164.00640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000011001000000000000000000000100000000000001020000005000000000000000001000122211200000000000000000000000000000000000000001000500000100000000000100000010252000010000000000001000000000000
................................................................................TAAGGTAGAGAAATTGATGCTGT.......................................................................................................................................................................................................................................23159.00590000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000030000102000000000000000001101001000000000000000000000000000000000000000000000000310000000000000000000000000360000020000000100000000000200000
...............................................................................ATAAGGTAGAGAAATTGATGCTGTCTT....................................................................................................................................................................................................................................27144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000006050000005000000000000000000000100111200000000000000000010000000000000000000000000400000000000000000200000000111000000000000000001000000000000
.....................................................................................TAGAGAAATTGATGCTGTC......................................................................................................................................................................................................................................19142.004200000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000201000000000000000002711100000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTT........................................................................................................................................................................................................................................23142.00420000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000002080500001000000000000000000100000100000000000000000000010000000000000000000000000300010000000000000100000000101000010000000000000020001000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGTCC.....................................................................................................................................................................................................................................26140.00400000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000004050000000000000000000000001101111000020000000000000000000000000000000000000000000200000000000000000100000101113000000000000000000000100000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGTCG.....................................................................................................................................................................................................................................26130.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001000000000000000000100000000000000000000000000000010000000000000000000001200000000000000000000100101161100000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGC.......................................................................................................................................................................................................................................24126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001020000002000000000000000000001000000000000000000000000000010000000000000000000000100000000000000000000000000060000020000000000000000000000000
.......................................................T----CGA-TGGGGCACTCAGGCT...............................................................................................................................................................................................................................................................19125.0025000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000002000000000000000000000000000000000000002000020000000000000000000220000320001000000000000000000000000000000000000000000000000000000000000000000000030000110000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGG.......................................................................................................................................................................................................................................24125.00250000000000000000000000000000000000000000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000161000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTC........................................................................................................................................................................................................................................23121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000005000000200000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000001000070000010000000000000001000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGA.......................................................................................................................................................................................................................................24119.0019000000000000000000000000000000000000000000000010011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000100000000000000000010000020000000000000000000000000000000000000000000000010001000000000000001000000050000000000000000000010000000000
................................................................................TAAGGTAGAGAAATTGATGCT.........................................................................................................................................................................................................................................21117.0017000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000200000000000000000000200001000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000060000000000000000000000020000000
...............................................................................ATAAGGTAGAGAAATTGATGCATC.......................................................................................................................................................................................................................................24116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000079000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGTCTATC..................................................................................................................................................................................................................................29115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000078000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AGAGAAATTGATGCTGTC......................................................................................................................................................................................................................................18114.0014000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000510000020000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................ACTTCAGTTTCATTACCTTT.....................................................................................................................................................................................20113.0013000000000000000000000003000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010302000000000010000000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGTCTA....................................................................................................................................................................................................................................27111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000200000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000020000000000000000000010000000000
................................................................................TAAGGTAGAGAAATTGATG...........................................................................................................................................................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGTCTC....................................................................................................................................................................................................................................27111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000200000000000000000010000000000000011000000000000000000000000000000000000000000000000000000000000000030000000000000000000000001000000
...............................................................................ATAAGGTAGAGAAATTGATGCTGGT......................................................................................................................................................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070300000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATGCTA........................................................................................................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000101000000200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000011000010000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGATT...........................................................................................................................................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
.....................................................................................TAGAGAAATTGATGCTGTCT.....................................................................................................................................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302000000000000000000000000300000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.................................................................................AAGGTAGAGAAATTGATGCTGTC......................................................................................................................................................................................................................................2319.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000020000000000000000000000000000100000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000
droEug1
A-CAAA-CTCGACTT-C--AAAACC-CAAACC--C------------AA-CTTCCT----CGC-CGGGGCACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGCGTT-C----------------TAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCCC--ACGCAACCG------------------------------------------GGATACC---GATAAC--G----------------------------T---------------------------------------------GGACATTA----------CSizeHit CountTotal NormTotal
No Reads
droBia1
A-CAAA-CTCGACCC-A--A--------AGGC--C------------AA-CCAACC----CGT--CGGGCACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTCTAT-T----------------CAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCCC--ATGCATCAG------------------------------------------TGATAAT---GATAAC--A------------------------TCGCT---------------------------------------------GGACATAA----------CSizeHit CountTotal NormTotal
No Reads
droTak1
A-TAAA-CTCGACTT-A--A--------AACC--C------------AA-CCAACT----CGA-CGGGGCACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTCAAT-T----------------CAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCCC--ACGCAACAG------------------------------------------TGATAAT---GATAAG--A------------------------TCGTT---------------------------------------------GGACG-TA----------CSizeHit CountTotal NormTotal
No Reads
droEle1
A-TAAA-CTCGA-----------------ACC--C------------AA-TTACCT----C----GGGGCACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CACTAC-T----------------CAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC-C--ACGCAACAG------------------------------------------TGATAAT---GATAGC--A------------------------TCGTT---------------------------------------------TGGCATTA----------CSizeHit CountTotal NormTotal
No Reads
droRho1
A-TAAA-CTCGGCTT-T--G--------AGTT--C------------AA-CTACCT----CCA-CGGGGCACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATACTAC------------------TGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC-C--ACGCAACAG------------------------------------------TGATAAT---GATAAC--A------------------------TCGTT---------------------------------------------GGACATTA----------CSizeHit CountTotal NormTotal
No Reads
droFic1
A-CAAA-CTCGGCTC-G--G--------AAGC--C------------AT-CC--CC----CCA-CTGGGCAGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTACAT-C----------------CAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCCC--ACGCAACAA-------------------------------------------GATAGT---GATTAC---------------------------CCGAT---------------------------------------------GGACATTT----------CSizeHit CountTotal NormTotal
No Reads
droKik1
A-CAAA-CTCGTCTC-G--GA-ACT------C--CA-ACAT-CCTGGAA-CTCCCT----GCC-CAAGGCACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTCTAAGC---------------TCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCCC--ACGCAACAG------------------------------------------TGATAAT---GTTAAC--A------------------------T-------------------------------------------------GGCCCGAA----------CSizeHit CountTotal NormTotal
No Reads
droAna3
A-TACG-CTCGACTT-T--G--------GGCC--C------------AA-CCACCT----GGCCGAGGGCACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCAA-A----------------TAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCCC--AAGCAACAA------------------------------------------TGATAAC---AGTGA-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...............................................................................ATAAGGTAGAGAAAATAATGTCT........................................................................................................................................................................................................................................2311274.001274800261118122
...............................................................................ATAAGGTAGAGAAAATAATGTC.........................................................................................................................................................................................................................................2211238.001238261057111044
...............................................................................ATAAGGTAGAGAAAATAATGT..........................................................................................................................................................................................................................................211170.0017040081526
...............................................................................ATAAGGTAGAGAAAATAATG...........................................................................................................................................................................................................................................20179.00794003684
......................................................................................................................................CATCAATTTCCCTAGCTTGCAT..................................................................................................................................................................................22111.0011000083
...............................................................................ATAAGGTAGAGAAAATAAT............................................................................................................................................................................................................................................1916.006000042
................................................................................TAAGGTAGAGAAAATAATGTC.........................................................................................................................................................................................................................................2114.004400000
...............................................................................ATAAGGTAGAGAAAATAATGTCC........................................................................................................................................................................................................................................2313.003010020
...............................................................................ATAAGGTAGAGAAAATAATGTCA........................................................................................................................................................................................................................................2313.003000111
...............................................................................ATAAGGTAGAGAAAATAATGTT.........................................................................................................................................................................................................................................2213.003000030
..............................................................................TATAAGGTAGAGAAAATAATGT..........................................................................................................................................................................................................................................2212.002000020
................................................................................TAAGGTAGAGAAAATAATGTCT........................................................................................................................................................................................................................................2212.002100010
...............................................................................ATAAGGTAGAGAAAATAATGTCTTTT.....................................................................................................................................................................................................................................2612.002100010
...............................................................................ATAAGGTAGAGAAAATAATGA..........................................................................................................................................................................................................................................2112.002000020
...............................................................................ATAAGGTAGAGAAAATAATGTCTT.......................................................................................................................................................................................................................................2411.001000010
...............................................................................ATAAGGTAGAGAAAATAATGTAA........................................................................................................................................................................................................................................2311.001000010
......................................................................................................................................CATCAATTTCCCTAGCTTGCATT.................................................................................................................................................................................2311.001000100
...............................................................................ATAAGGTAGAGAAAATAATGTCTTT......................................................................................................................................................................................................................................2511.001000010
......................................................................................................................................CATCAATTTCCCTAGCTTGCA...................................................................................................................................................................................2111.001000010
.......................................................................................................................................ATCAATTTCCCTAGCTTGCAT..................................................................................................................................................................................2111.001000010
.....................................................................................................................................ACATCAATTTCCCTAGCTTGCAT..................................................................................................................................................................................2311.001000010
...............................................................................ATAAGGTAGAGAAAATAATGG..........................................................................................................................................................................................................................................2111.001000010
.....................................................................................................................................ACATCAATTTCCCTAGCTTGCA...................................................................................................................................................................................2211.001100000
...............................................................................ATAAGGTAGAGAAAATA..............................................................................................................................................................................................................................................1711.001000100
...............................................................................ATAAGGTAGAGAAAATAATGC..........................................................................................................................................................................................................................................2111.001000010
.................................................................................AAGGTAGAGAAAATAATGTC.........................................................................................................................................................................................................................................2011.001000010
................................................................................TAAGGTAGAGAAAATAATGT..........................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................CATCAATTTCCCTAGCTTGC....................................................................................................................................................................................2011.001000100
droBip1
A-TACA-CACGACTT-T--G--------GGCC--C------------AA-CCACCT----GGTCGGGGGCACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTCCAA-A----------------TAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCTC--AAGCAACCA------------------------------------------TGATAAT---AATAAG--C------------------------TCATC----------------------------------------------------A----------GSizeHit CountTotal NormTotal
No Reads
dp5
AATGAA-CTCGACTC-G--AGTGCCACAAATG--CC-ACAT-GATGCA-------------AA-TGGAGCAGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTATTC----------------TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGCCAACAGCAACAG-------------------C-TACAAAACGAGTAACGAGGAGAGATAAT---GATCAT--G------------------------TCGTTTCATTTTGGTTAGTATTATTAACACAAA-----------------GGGTCTCG----------CSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..............................................................................TTTAAGGTACAGACTTTG---------AGTC.................................................................................................................................................................................................................................221720.00720861100820104860
..............................................................................TTTAAGGTACAGACTTTG---------AG...................................................................................................................................................................................................................................201381.003814300022603460
..............................................................................TTTAAGGTACAGACTTTG---------AGT..................................................................................................................................................................................................................................211292.002921010001102781
..............................................................................TTTAAGGTACAGACTTTG---------AGTCT................................................................................................................................................................................................................................231125.00125158000280920
.......................................................................................................................................ATCAATTTTCGTATCTTTTAAT.................................................................................................................................................................................22125.002500000000250
..............................................................................TTTAAGGTACAGACTTTG---------A....................................................................................................................................................................................................................................19123.002301000100210
..............................................................................TTTAAGGTACAGACTTTG---------AGTT.................................................................................................................................................................................................................................22115.001501000040100
.......................................................................................................................................ATCAATTTTCGTATCTTTTAA..................................................................................................................................................................................21113.001303000000100
......................................................................................................................................CATCAATTTTCGTATCTTTTAAT.................................................................................................................................................................................2319.0090001000080
..............................................................................TTTAAGGTACAGACTTTG---------AGTCA................................................................................................................................................................................................................................2317.0070000000070
...........................................................................TGTTTTAAGGTACAGACTTTG---------A....................................................................................................................................................................................................................................2216.0060000000060
...............................................................................TTAAGGTACAGACTTTG---------AGTC.................................................................................................................................................................................................................................2115.0050000003020
..............................................................................TTTAAGGTACAGACTTTG---------AGA..................................................................................................................................................................................................................................2114.0040000001030
...........................................................................TGTTTTAAGGTACAGACTTTG---------.....................................................................................................................................................................................................................................2112.0020000000020
...............................................................................TTAAGGTACAGACTTTG---------AG...................................................................................................................................................................................................................................1912.0020000000020
..............................................................................TTTAAGGTACAGACTTTG---------AA...................................................................................................................................................................................................................................2012.0020000000020
..............................................................................TTTAAGGTACAGACTTTG---------AGTA.................................................................................................................................................................................................................................2212.0020000000020
.................................................................................AAGGTACAGACTTTG---------AGTCA................................................................................................................................................................................................................................2012.0020000000020
.................................................................................AAGGTACAGACTTTG---------AGTC.................................................................................................................................................................................................................................1912.0020000000020
..............................................................................TTTAAGGTACAGACTTTG---------AGTCCTA..............................................................................................................................................................................................................................2511.0010000000010
..............................................................................TTTAAGGTACAGACTTTA---------.....................................................................................................................................................................................................................................1811.0010000000010
...............................................................................TTAAGGTACAGACTTTG---------AGT..................................................................................................................................................................................................................................2011.0010000000010
..............................................................................TTTAAGGTACAGACTTTG---------.....................................................................................................................................................................................................................................1811.0010000000010
..............................................................................TTTAAGGTACAGACTTTG---------AGTCC................................................................................................................................................................................................................................2311.0010000000010
..............................................................................TTTAAGGTACAGACTTTG---------AGTCTA...............................................................................................................................................................................................................................2411.0010000000010
..............................................................................TTTAAGGTACAGACTTTG---------AGTCTATTC----------------............................................................................................................................................................................................................2711.0010000000010
.......................................................................................................................................ATCAATTTTCGTATCTTTTA...................................................................................................................................................................................2011.0010000000010
...............................................................................TTAAGGTACAGACTTTG---------AGTCT................................................................................................................................................................................................................................2211.0010100000000
...................................................................AGCAGTCGTGTTTTAAGGTAC......................................................................................................................................................................................................................................................2111.0011000000000
......................................................................................................................................CATCAATTTTCGTATCTTTTAA..................................................................................................................................................................................2211.0010000000010
droPer2
AATGAA-CTCGACTC-G--AGTGCCACAAATG--CC-ACAT-GATGCA-------------AA-TGGAGCAGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTATTC----------------TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGCCAACAGCAACAG-------------------C-TACAAAACGAGTAACGAGGAGAGATAAT---GACCAT--G------------------------TCGTTTCATTTT--------------------------------------GGTTAGTA----------TSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................................TTTAAGGTACAGACTTTG---------AGTC.................................................................................................................................................................................................................................221234.0023401010232
..............................................................................TTTAAGGTACAGACTTTG---------AGTCT................................................................................................................................................................................................................................23137.00370000037
..............................................................................TTTAAGGTACAGACTTTG---------AG...................................................................................................................................................................................................................................20132.00320000032
..............................................................................TTTAAGGTACAGACTTTG---------AGT..................................................................................................................................................................................................................................21115.00150100014
..............................................................................TTTAAGGTACAGACTTTG---------A....................................................................................................................................................................................................................................1915.005000005
..............................................................................TTTAAGGTACAGACTTTG---------AGTT.................................................................................................................................................................................................................................2215.005000005
..............................................................................TTTAAGGTACAGACTTTG---------AGTA.................................................................................................................................................................................................................................2211.001000001
..............................................................................TTTAAGGTACAGACTTTG---------AGTCA................................................................................................................................................................................................................................2311.001000001
droWil2
A-TAAA-CCTGGCTT-ACAAAAGCTATAATTG--CTGAAATGGATACACGTTTTCTATTTAAT-AAGGACCCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATTT---GTAACAA-TTGT----TAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCA-CATGCAACAA-------------------CATATAATACAATC-AAACAAAATGATAAA--------C--A------------------------TCATA---------------------------------------------ATGC---C----------CSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...............................................................................ATAAGGTAGAGAAAATGTTGTCT........................................................................................................................................................................................................................................2311876.001876261117621463
...............................................................................ATAAGGTAGAGAAAATGTTGTC.........................................................................................................................................................................................................................................2211235.00123512411791327
...............................................................................ATAAGGTAGAGAAAATGTTGTCC........................................................................................................................................................................................................................................23153.0053714302
................................................................................TAAGGTAGAGAAAATGTTGTCT........................................................................................................................................................................................................................................22132.0032012812
...............................................................................ATAAGGTAGAGAAAATGTTGT..........................................................................................................................................................................................................................................21626.671600115603
...............................................................................ATAAGGTAGAGAAAATGTTGTCA........................................................................................................................................................................................................................................23123.0023012200
............................................................................................................................T----TAAGACATCACTTTCACTAGC........................................................................................................................................................................................22111.001112413
...............................................................................ATAAGGTAGAGAAAATGTTG...........................................................................................................................................................................................................................................2066.5039003900
...............................................................................ATAAGGTAGAGAAAATGTTGTCTT.......................................................................................................................................................................................................................................2415.00500500
............................................................................................................................T----TAAGACATCACTTTCACTAG.........................................................................................................................................................................................2115.00511300
...............................................................................ATAAGGTAGAGAAAATGTTGTCTA.......................................................................................................................................................................................................................................2414.00400301
...............................................................................ATAAGGTAGAGAAAATGTTGTCTC.......................................................................................................................................................................................................................................2413.00300201
..............................................................................TATAAGGTAGAGAAAATGTTGTCT........................................................................................................................................................................................................................................2413.00300201
......................................................................................................................................CATCACTTTCACTAGCTTTCA...................................................................................................................................................................................2113.00300201
..............................................................................TATAAGGTAGAGAAAATGTTGTC.........................................................................................................................................................................................................................................2313.00300300
...............................................................................ATAAGGTAGAGAAAATGTTGTCG........................................................................................................................................................................................................................................2313.00310200
...............................................................................ATAAGGTAGAGAAAATGTTGTCCC.......................................................................................................................................................................................................................................2412.00200200
......................................................................................................................................CATCACTTTCACTAGCTTTCAA..................................................................................................................................................................................2212.00200200
............................................................................................................................T----TAAGACATCACTTTCACTA..........................................................................................................................................................................................2011.00100001
............................................................................................................................T----TAAGACATCACTTTCACTAGCA.......................................................................................................................................................................................2311.00100100
......................................................................................................................................CATCACTTTCACTAGCTTTC....................................................................................................................................................................................2011.00100100
...........................................................TAAT-AAGGACCCTCAAGTT...............................................................................................................................................................................................................................................................1911.00110000
.................................................................................................................................TAAGACATCACTTTCACTAGCT.......................................................................................................................................................................................2211.00100001
............................................................................................................................T----TAAGACATCACTTTCACTAGCG.......................................................................................................................................................................................2311.00100100
............................................................................................................................T----TAAGACATCACTTTCACTAGCT.......................................................................................................................................................................................2311.00110000
.................................................................................AAGGTAGAGAAAATGTTGTC.........................................................................................................................................................................................................................................2011.00100100
...............................................................................ATAAGGTAGAGAAAATGTTGTT.........................................................................................................................................................................................................................................2260.83500500
...............................................................................ATAAGGTAGAGAAAATGTT............................................................................................................................................................................................................................................1960.67400400
...............................................................................ATAAGGTAGAGAAAATGTTGTA.........................................................................................................................................................................................................................................2260.33200200
...............................................................................ATAAGGTAGAGAAAATGT.............................................................................................................................................................................................................................................1860.17100001
..............................................................................TATAAGGTAGAGAAAATGTTGT..........................................................................................................................................................................................................................................2260.17100100
................................................................................TAAGGTAGAGAAAATGTTGT..........................................................................................................................................................................................................................................2060.17101000
...............................................................................ATAAGGTAGAGAAAATGTCT...........................................................................................................................................................................................................................................20100.10100100
droVir3
-----------------------------------------------------------------------CTCAAATTATAAGGTAGAGAAATTGTTGTCTACTT-TACAT-ATG--------G----TGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCAA--ATGCAACGGAACCATTTTGGAGGAACATCATAT-TTAGAAT--AAGCCACATGATAGG-----CAGCACATTTAGCATTTGAATGCCGGACTGCTCAA-----------------------------CGATATCATCAAGGAAC----CGAAGGGAGATTATCSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...............................................................................ATAAGGTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................231452353.0045235343722417134983055795910172618101383231568429120323943379189263263231191604212413091328426856628584317648935243732626700000000010200177133028261343626316133181361231914315383110228
...............................................................................ATAAGGTAGAGAAATTGTTGTCC........................................................................................................................................................................................................................................23124475.00244751360483262911451252943827001400040217220141310419042207937294622343000016279700000000000000000800012490580002313207293110002
...............................................................................ATAAGGTAGAGAAATTGTTGTC.........................................................................................................................................................................................................................................22120497.002049717044127167160177260505953004100240111902297131718248821206892252081610309139500000000000000000401252307190054515327452471214
...............................................................................ATAAGGTAGAGAAATTGTTGT..........................................................................................................................................................................................................................................2118724.0087242038324512449643515164100320140036010321254626147810493601114125700141114970000000000000000000231420228107159191016470033
...............................................................................ATAAGGTAGAGAAATTGTTGTCTC.......................................................................................................................................................................................................................................2418340.0083403203061186154715448000200020747109221036796933289540601000061172000000000000000002000240000001121421820600000
................................................................................TAAGGTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................2213286.003286504314312155408100250020000001641010207240179782540102001012140000000000000000000109600200010301000001
...............................................................................ATAAGGTAGAGAAATTGTTG...........................................................................................................................................................................................................................................2011084.0010840014051199488130500000010068009216312911348148058010021320000000000000000000011400310110010001011
...............................................................................ATAAGGTAGAGAAATTGTTGTCTT.......................................................................................................................................................................................................................................241691.0069100123480103111600000000002400120331057714851460020145000000000000000000000300000011102000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCCC.......................................................................................................................................................................................................................................241497.0049760000761002900000000005300000003133257006500000820000000000000000000002500000000001000000
................................................................................TAAGGTAGAGAAATTGTTGTCTA.......................................................................................................................................................................................................................................231431.00431000014317019500000000003700000003426143402300000310000000000000000000001800000020100000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTA.......................................................................................................................................................................................................................................241197.001970000513133121111002100000050010027137513030030511000000000000000000010300000010001000000
.....................................................................................................................................ACATCAAT-TCACTAGCTTTCA...................................................................................................................................................................................211194.0019400101400000000000010190010000492413320120000036000000000000000000000100000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTC...........................................................................................................................................................................................................................................201192.001921000122000480000000000130000000151532801100001240000000000000000000001000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTCT......................................................................................................................................................................................................................................251167.001670000039011380000000000700000001520213050000019000000000000000000000700000000000000000
.....................................................................................................................................ACATCAAT-TCACTAGCTTTCAA..................................................................................................................................................................................221167.001670010140000000000000011000000144242045000000016000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTTC........................................................................................................................................................................................................................................231166.0016620000170012000000000001800000001817826090000020000000000000000000000700000010002000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCA........................................................................................................................................................................................................................................231164.001640061111460350000000100600202231114810040030150000000000000000000001800000103500000001
..................................................................................AGGTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................201157.001570000128124030100000000013000000011932090000024000000000000000000000100000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCCT.......................................................................................................................................................................................................................................241138.0013810100700019000000000020000000013143180120000026000000000000000000000300000010000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCG........................................................................................................................................................................................................................................231110.001102510004019030100000000090000000162103000005000000000000000000000100000001100000000
....................................................................................GTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................18198.009800101180161900000000001200000009110505000019000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTT............................................................................................................................................................................................................................................19191.00910000016040900000001008000001012135805000009000000000000000000000000000000000000000
.................................................................................AAGGTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................21180.008000720009113000000000050000000101021202000006000000000000000000000100000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTT.........................................................................................................................................................................................................................................22167.0067000003060180000000000600000016311403000003000000000000000000000300000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTCA......................................................................................................................................................................................................................................25162.006200000100016000000000080010000758203000017000000000000000000000300000000000000000
...............................................................................ATAAGGTAGAGAAATTGTCC...........................................................................................................................................................................................................................................20160.006010000300111000000000090000000765903000003000000000000000000000200000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTTT......................................................................................................................................................................................................................................25160.006000000007017000000000020000000762603000008000000000000000000000200000000000000000
...................................................................................GGTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................19147.004700000100516000000000040000000850101000006000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGT.............................................................................................................................................................................................................................................18145.00450000020211000000000050000000753607000004000000000000000000000000000002000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTA.........................................................................................................................................................................................................................................22141.00410010041009000100000080000020141400000003000000000000000000000000000100000010000
................................................................................TAAGGTAGAGAAATTGTTGTC.........................................................................................................................................................................................................................................21138.00380080010407000000000010000000412503000001000000000000000000000100000000000000000
................................................................................TAAGGTAGAGAAATTGTTGTCC........................................................................................................................................................................................................................................22134.00340030050006000000000000000000423204000004000000000000000000000100000000000000000
................................................................................TAAGGTAGAGAAATTGTTGTCTC.......................................................................................................................................................................................................................................23134.00340010070118000000000020000000212201000005000000000000000000000100000000000000000
.....................................................................................................................................ACATCAAT-TCACTAGCTTTC....................................................................................................................................................................................20129.00290000010201000000000000000000551503000006000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTTTC.....................................................................................................................................................................................................................................26129.002900000200010000000000020000000121402000005000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTTCT.......................................................................................................................................................................................................................................24125.00250000010705000000000010000000210000000000000000000000000000000800000000000000000
...............................................................................ATAAGGTAGAGAAATTGTC............................................................................................................................................................................................................................................19124.002400000300011000000000010000000120400000002000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTCTC.....................................................................................................................................................................................................................................26124.00240000020001000000000010000000563500000001000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTAC........................................................................................................................................................................................................................................23123.00230000030203000000000040000000111004000003000000000000000000000100000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTAA......................................................................................................................................................................................................................................25123.00230000001030010000000030000032011000005020000000000000000000000000000010000000000
...............................................................................ATAAGGTAGAGAAATTGTTGC..........................................................................................................................................................................................................................................21120.00200000010804000000000030000000011001000001000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTAA........................................................................................................................................................................................................................................23118.00180010001010010000000000000010000000010000000000000000000000000400000000103020011
................................................................................TAAGGTAGAGAAATTGTTGTCTAT......................................................................................................................................................................................................................................24116.00160000010300000000000010000000120500000001000000000000000000000200000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTAT......................................................................................................................................................................................................................................25115.00150000000330300100000000000030000000001010000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTAAA.....................................................................................................................................................................................................................................26115.00150010100000000000000000000034000000005000000000000000000000000000100000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTTCC.......................................................................................................................................................................................................................................24115.00150000020003000000000000000000320102000002000000000000000000000000000000000000000
..................................................................................AGGTAGAGAAATTGTTGTCC........................................................................................................................................................................................................................................20113.00130000060000000000000000000000100101000002000000000000000000000200000000000000000
..............................................................................TATAAGGTAGAGAAATTGTTGTCT........................................................................................................................................................................................................................................24112.00120010000203000000000000000000111002000000000000000000000000000100000000000000000
..................................................................................AGGTAGAGAAATTGTTGTC.........................................................................................................................................................................................................................................19111.00110000020002000000000000000000102000000004000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTTA......................................................................................................................................................................................................................................25111.00110000000015000000000010000000111000000001000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTCC..........................................................................................................................................................................................................................................21110.00100000000003000000000000000001110102000001000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCTG.......................................................................................................................................................................................................................................24110.00100000010011000000000010000000120100000002000000000000000000000000000000000000000
...................................................................................GGTAGAGAAATTGTTGTCTC.......................................................................................................................................................................................................................................2019.0090000030001000000000020000000000001000002000000000000000000000000000000000000000
....................................................................................GTAGAGAAATTGTTGTCC........................................................................................................................................................................................................................................1819.0090000000007000000000010000000010000000000000000000000000000000000000000000000000
...............................................................................ATAAGGTAGAGAAATTGTTGTCCCT......................................................................................................................................................................................................................................2519.0090000000002000000000010000000210200000001000000000000000000000000000000000000000
droMoj3
T-CGTA-CTCG-----------------------------------------------------TAGAGCGCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCAT---ATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTAA--ATGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...............................................................................ATAAGGTAGAGATATTGTTGTCT........................................................................................................................................................................................................................................23114885.001488552089144114599
...............................................................................ATAAGGTAGAGATATTGTTGT..........................................................................................................................................................................................................................................2112016.002016170468701866
...............................................................................ATAAGGTAGAGATATTGTTGTC.........................................................................................................................................................................................................................................2211358.00135811091701321
...............................................................................ATAAGGTAGAGATATTGTTGTCTC.......................................................................................................................................................................................................................................241867.0086780390847
................................................................................TAAGGTAGAGATATTGTTGTCT........................................................................................................................................................................................................................................221513.0051350460498
................................................................................TAAGGTAGAGATATTGTTGTCTTC......................................................................................................................................................................................................................................241301.0030130000298
...............................................................................ATAAGGTAGAGATATTGTTGTCTTC......................................................................................................................................................................................................................................251130.0013010000129
...............................................................................ATAAGGTAGAGATATTGTTGTCC........................................................................................................................................................................................................................................231119.0011910001117
...............................................................................ATAAGGTAGAGATATTGTTG...........................................................................................................................................................................................................................................201112.0011240312093
...............................................................................ATAAGGTAGAGATATTGTTGTCTCC......................................................................................................................................................................................................................................25188.00886001081
...............................................................................ATAAGGTAGAGATATTGTTGTCTT.......................................................................................................................................................................................................................................24188.00881022083
................................................................................TAAGGTAGAGATATTGTTGTCTT.......................................................................................................................................................................................................................................23167.00674002061
................................................................................TAAGGTAGAGATATTGTTGTC.........................................................................................................................................................................................................................................21154.00542001051
...............................................................................ATAAGGTAGAGATATTGTTGTCTTTC.....................................................................................................................................................................................................................................26134.00340000034
...............................................................................ATAAGGTAGAGATATTGTTGTCTTT......................................................................................................................................................................................................................................25131.00310002029
................................................................................TAAGGTAGAGATATTGTTGTCTTT......................................................................................................................................................................................................................................24127.00270000027
................................................................................TAAGGTAGAGATATTGTTGTCTTTC.....................................................................................................................................................................................................................................25126.00260000026
...............................................................................ATAAGGTAGAGATATTGTTGTCTCA......................................................................................................................................................................................................................................25116.00160001015
................................................................................TAAGGTAGAGATATTGTTGTCTTCC.....................................................................................................................................................................................................................................25116.00160000016
...............................................................................ATAAGGTAGAGATATTGTTGTCA........................................................................................................................................................................................................................................23116.00160001015
................................................................................TAAGGTAGAGATATTGTTGTCTC.......................................................................................................................................................................................................................................23115.00151010013
................................................................................TAAGGTAGAGATATTGTTGT..........................................................................................................................................................................................................................................20115.00151002012
...............................................................................ATAAGGTAGAGATATTGTTGC..........................................................................................................................................................................................................................................21110.0010100009
...............................................................................ATAAGGTAGAGATATTGTTGTCTA.......................................................................................................................................................................................................................................2418.008100007
...............................................................................ATAAGGTAGAGATATTGTTGTCTCCC.....................................................................................................................................................................................................................................2616.006000006
...............................................................................ATAAGGTAGAGATATTGTTGTCTTCC.....................................................................................................................................................................................................................................2616.006000006
...............................................................................ATAAGGTAGAGATATTGTTGTT.........................................................................................................................................................................................................................................2216.006000006
................................................................................TAAGGTAGAGATATTGTTGTCTTCA.....................................................................................................................................................................................................................................2514.004000004
................................................................................TAAGGTAGAGATATTGTTGTCC........................................................................................................................................................................................................................................2214.004000004
...............................................................................ATAAGGTAGAGATATTGTTGTCCC.......................................................................................................................................................................................................................................2414.004000004
.......CTCG-----------------------------------------------------TAGAGCGCTCAAGTT...............................................................................................................................................................................................................................................................1913.003000003
...............................................................................ATAAGGTAGAGATATTGTTGTCTTTT.....................................................................................................................................................................................................................................2613.003000003
.....A-CTCG-----------------------------------------------------TAGAGCGCTCAAGTT...............................................................................................................................................................................................................................................................2013.003100002
.................................................................................AAGGTAGAGATATTGTTGTCT........................................................................................................................................................................................................................................2113.003200001
...............................................................................ATAAGGTAGAGATATTGTT............................................................................................................................................................................................................................................1913.003001002
...............................................................................ATAAGGTAGAGATATTGTC............................................................................................................................................................................................................................................1913.003000003
................................................................................TAAGGTAGAGATATTGTTGTCTTA......................................................................................................................................................................................................................................2412.002000002
...............................................................................ATAAGGTAGAGATATTGTTC...........................................................................................................................................................................................................................................2012.002000002
...............................................................................ATAAGGTAGAGATATTGTTGTCTTCA.....................................................................................................................................................................................................................................2612.002000002
...............................................................................ATAAGGTAGAGATATTGTTGTA.........................................................................................................................................................................................................................................2212.002000002
...............................................................................ATAAGGTAGAGATATTGTTGA..........................................................................................................................................................................................................................................2112.002000200
.....................................................................................................................................ACATCAAT-TCACTAGCTTTCAA..................................................................................................................................................................................2211.001100000
................................................................................TAAGGTAGAGATATTGTTGTCTTTTTC...................................................................................................................................................................................................................................2711.001000001
...............................................................................ATAAGGTAGAGATATTGTTGTCCCC......................................................................................................................................................................................................................................2511.001000001
...............................................................................ATAAGGTAGAGATATTGT.............................................................................................................................................................................................................................................1811.001001000
...............................................................................ATAAGGTAGAGATATTGTTGTCTTA......................................................................................................................................................................................................................................2511.001000001
...............................................................................ATAAGGTAGAGATATTGTTGTCTCG......................................................................................................................................................................................................................................2511.001000001
......................................................................................................TTTTGCAT---ATAGCACTCTGTTATGT............................................................................................................................................................................................................2511.001000001
...............................................................................ATAAGGTAGAGATATTGTTGTG.........................................................................................................................................................................................................................................2211.001100000
...............................................................................ATAAGGTAGAGATATTGTTT...........................................................................................................................................................................................................................................2011.001001000
...............................................................................ATAAGGTAGAGATATTGTTGTCTTTAA....................................................................................................................................................................................................................................2711.001000001
...............................................................................ATAAGGTAGAGATATTGTTGTTC........................................................................................................................................................................................................................................2311.001000100
...............................................................................ATAAGGTAGAGATATTGTTGTCTTTTCT...................................................................................................................................................................................................................................2811.001000001
................................................................................TAAGGTAGAGATATTGTTGTCTCA......................................................................................................................................................................................................................................2411.001000001
..................................................................................AGGTAGAGATATTGTTGTCT........................................................................................................................................................................................................................................2011.001000001
...............................................................................ATAAGGTAGAGATATTGTTGTCTTTTC....................................................................................................................................................................................................................................2711.001000001
...............................................................................ATAAGGTAGAGATATTGTTGTCTTTTT....................................................................................................................................................................................................................................2711.001000100
................................................................................TAAGGTAGAGATATTGTTG...........................................................................................................................................................................................................................................1911.001100000
................................................................................TAAGGTAGAGATATTGTTGTT.........................................................................................................................................................................................................................................2111.001000001
...............................................................................ATAAGGTAGAGATATTGTTGTCTCCA.....................................................................................................................................................................................................................................2611.001000001
...............................................................................ATAAGGTAGAGATATTGTTGTAA........................................................................................................................................................................................................................................2311.001100000
.................................................................................AAGGTAGAGATATTGTTGTC.........................................................................................................................................................................................................................................2011.001000001
................................................................................TAAGGTAGAGATATTGTTGTCTTTT.....................................................................................................................................................................................................................................2511.001000001
................................................................................TAAGGTAGAGATATTGTTGTCTTCCC....................................................................................................................................................................................................................................2611.001000001
...............................................................................ATAAGGTAGAGATATTGTCT...........................................................................................................................................................................................................................................2011.001000001
droGri2
C--AAA-CTAAGAGCAG-----G-T-TACTTTCAT------------AA-CACACT----C---AAGAGCTCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATAA------------------AAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCAA--ATGCAACGG--------------------------------------------ACAAT---GC-------------------------------CCAA-----------------------------CAACA----------------TTAT----------TSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...............................................................................ATAAGGTAGAGATTTTGTTGTCT........................................................................................................................................................................................................................................2311234.001234341200
...............................................................................ATAAGGTAGAGATTTTGTTGT..........................................................................................................................................................................................................................................211282.002827275
...............................................................................ATAAGGTAGAGATTTTGTTGTC.........................................................................................................................................................................................................................................221100.00100397
...............................................................................ATAAGGTAGAGATTTTGTTGTCC........................................................................................................................................................................................................................................2318.00808
................................................................................TAAGGTAGAGATTTTGTTGTCT........................................................................................................................................................................................................................................2217.00743
...............................................................................ATAAGGTAGAGATTTTGTTGTCG........................................................................................................................................................................................................................................2315.00505
...............................................................................ATAAGGTAGAGATTTTGTTG...........................................................................................................................................................................................................................................2015.00505
...............................................................................ATAAGGTAGAGATTTTGTTGTCA........................................................................................................................................................................................................................................2312.00202
...............................................................................ATAAGGTAGAGATTTTGTTGTA.........................................................................................................................................................................................................................................2212.00202
...............................................................................ATAAGGTAGAGATTTTGTTGTCTT.......................................................................................................................................................................................................................................2411.00101
...............................................................................ATAAGGTAGAGATTTTGTCT...........................................................................................................................................................................................................................................2011.00101
.................................................................................AAGGTAGAGATTTTGTTGTCT........................................................................................................................................................................................................................................2111.00110
................................................................................TAAGGTAGAGATTTTGTTGTCTT.......................................................................................................................................................................................................................................2311.00101
...............................................................................ATAAGGTAGAGATTTTGTTGTCTG.......................................................................................................................................................................................................................................2411.00110

Generated: 10/20/2015 at 07:44 PM