der_233

Name	Class	Family	Strand
IDEFIX_I-int	LTR	Gypsy	-

GTGGTAGTTATATGGTTTTTTATAAATATGGTCTTCGTGTTTTGTATGAATAGAGTGCTTAATCGTACTTGCGAAGGTCAAATTTTCTCCTTCCTTGTACTGAATATCACTGTATTCGAGCGAAAGTTGTTCCATTTCTGCTGTATTTAGGTGTTCTAATCTGAATA *********************************....((((((.((((((.((((..((.((((((....(((((...........)))))...)))).)).)).)))).)))))).)))))).......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	V107 male body	V040 embryo	V108 head
...........................................................................................TCCTTGTACTGAATATCACTGTATT...................................................	25	0	4	12.50	50	50	0	0	0
..........................................................................................TTCCTTGTACTGAATATCACTGTATT...................................................	26	0	4	9.50	38	38	0	0	0
...........................................................................................TCCTTGTACTGAATATCACTGTAT....................................................	24	0	4	3.75	15	15	0	0	0
..........................................................................................TTCCTTGTACTGAATATCACTGTAT....................................................	25	0	4	3.50	14	13	0	0	1
.................................TTCGTGTTTTGTATGAATAGAGTGC.............................................................................................................	25	0	1	1.00	1	0	1	0	0
............................................................................................CCTTGTACTGAATATCACTGTATT...................................................	24	0	4	0.75	3	3	0	0	0
............................................TATGAATAGAGTGCTTAATCGTAAT..................................................................................................	25	1	2	0.50	1	1	0	0	0
...........................................................................................TCCTTGTACTGAATATCACTGTA.....................................................	23	0	4	0.50	2	2	0	0	0
............................................................................................CCTTGTACTGAATATCACTGTAT....................................................	23	0	4	0.50	2	2	0	0	0
..........................................................................................TTCCTTGTACTGAATATCACTGTA.....................................................	24	0	4	0.50	2	2	0	0	0
................................................................................AATGTGCTCCTTCCTTGTA....................................................................	19	2	3	0.33	1	0	0	1	0
.......................................................................................................................................TTCTGCTGTATTTAGGTGTTCAT.........	23	2	3	0.33	1	1	0	0	0
...........................................................................................TCCTTGTACTGAATAACACTGTATT...................................................	25	1	4	0.25	1	1	0	0	0
.........................................................................................CTTCCTTGTACTGAATATCACT........................................................	22	0	4	0.25	1	1	0	0	0
...........................................................................................TCCTTGTACTGAATATCACTG.......................................................	21	0	4	0.25	1	1	0	0	0
........................................................................................CCTTCCTTGTACTGAATATCACTGTATT...................................................	28	0	4	0.25	1	1	0	0	0
........................................................................................CCTTCCTTGTACTGAATATCACTG.......................................................	24	0	4	0.25	1	1	0	0	0
..........................................................................................TTCCTTGTACTGAATTTCACTGTATT...................................................	26	1	4	0.25	1	1	0	0	0
...........................................................................................GCCTTGTACTGAATATCACTGTATT...................................................	25	1	4	0.25	1	1	0	0	0
...........................................................................................TCCTTGTACTGAATATGACTGTATT...................................................	25	1	4	0.25	1	1	0	0	0
..........................................................................................TTCCTTGTACTGAATATCACGGTATT...................................................	26	1	4	0.25	1	1	0	0	0
...........................................................................................TCCTTGTACTGAATTTCACTGTATT...................................................	25	1	4	0.25	1	1	0	0	0
...........................................................................................TCCTTGTACTGAATATCCCTGTATT...................................................	25	1	4	0.25	1	1	0	0	0
...........................................................................................TCCTTGTACTGAATATCACTGT......................................................	22	0	4	0.25	1	1	0	0	0
.................................TTCGTGTTTTGTATGAATAGAGTG..............................................................................................................	24	0	5	0.20	1	1	0	0	0
..........................................................................................GTCCTTGTACTGAATATCACTGTATT...................................................	26	1	5	0.20	1	1	0	0	0
..........................................................................................TTCCTTGTCCTGAATAGCACTGTATT...................................................	26	2	5	0.20	1	1	0	0	0
................................................................................................GTACTGAATATCACTGTATT...................................................	20	0	20	0.05	1	1	0	0	0

CACCATCAATATACCAAAAAATATTTATACCAGAAGCACAAAACATACTTATCTCACGAATTAGCATGAACGCTTCCAGTTTAAAAGAGGAAGGAACATGACTTATAGTGACATAAGCTCGCTTTCAACAAGGTAAAGACGACATAAATCCACAAGATTAGACTTAT *********************************....((((((.((((((.((((..((.((((((....(((((...........)))))...)))).)).)).)))).)))))).)))))).......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	V107 male body
..................................................................................................................................AGGTAAAGACGACATAAATCCACAAG...........	26	0	1	1.00	1	1	0
......................ATTTATACCAGAAGCACAAAACATAC.......................................................................................................................	26	0	1	1.00	1	1	0
........................................................................................GGAAGGAACATGACTTATAGTGACAT.....................................................	26	0	4	0.25	1	0	1
........................................................................................GGAAGGAACGTGACTTGTA............................................................	19	2	7	0.14	1	0	1

Species	Coordinate	ID	Alignment
droEre2	scaffold_4784:25196792-25196958 +	der_233	GTGGTAGTTATATGGTTTTTTATAAATATGGTCTTCGTGTTTTGTATGAATAGAGTGCTTAATCGTACTTGCGAAGGTCAAATTTTCTCCTTCCTTGTACTGAATATCACTGTATTCGAGCGAAA---------GTTGTTCCATTTCTGCTGTATTTAGGTGTTCTAATCTGAATA
droYak3	v2_chr2L_random_028:1730983-1731153 +		GGGGTACTTATATTGTTTTTTATAGATAGGGTCTTCGTGTTTTGTATGAATAGAATGTTTGATCGTACTTGTGA--GTCAAATTTTCACCTTCTTTGTACAGAATATCATTGTATTCAAGCAGAACGG---AAAGTTGTTCCCTTTCTTCTGTATTCAGATGTTCTAATCTGAATA
droSec2	scaffold_302:6506-6681 -		GGGGTATTTATATGGTTTTTTATAGATAGGGTCTTCGTGTTTTGTATGAATAGAATGTTTAATCGTACTTGTGAAGGTCAAAGTTTCACCTTCTTTGTACTGAATATCACGGTATTCAAGCAAAACGTGGGAAAGTTGCTCCCTTTCTTCTGTATTTAGATGTTCTAATCTGAATA
droSim2	node_7166:213-388 -		AGGGTATTTATACGGTTTTTTATAGATAGGGTCTTCGTGTTTTGTATGAATGGAATGTTTAATCGTACTCGTGAAGGTCAAAGTTTCACCTTCTTTGTACTGAATATCACGGTATTCAAGCAAAACGTGGGAAAGTTGCTCCCTTTCTTCTGTATTTAGATGTTCTAATCTAAATA
dm3	chr3RHet:1571894-1572069 -		GGGGTATTTATATGGTTTTTTACAGATAGGGTCTTCGTGTTTTGTATGAATAGAATGCTTAATCGTACTTGTAAAGGTCAAAGTTTCACTTTCTTTGTACTGAATATCACGGTATTCAAGCAAAACATGGGAAAGTTGCTCCCTTTCTTCTGTATTTTGATGTTCTAATCTAAATA
droEug1	scf7180000407429:2439-2614 -		AGGGTATTTATATGGTTTGCGATAAACCGGATCCTCATGTTGTGTTTGAATCGAATGTTTTATTGTACTGGTGAAGGTCAAATTTTCGCCTTCCCTGTACTGAATATCTCTATATTCGTATAGGATTTTTTTCAAACTTTCGATCTCTTCACTGTTTAAGTGTTCTAATCTAAATT
droBia1	scf7180000301127:608-775 -		AGGATATTTAAATGGTTTCCAGTATA--TGATCTTCATGCTTGGTTTGAATTGAATGTTTAATAGTACTTGTAAAATTCAAATTTTCACCTTCCTTGTGCTGGATGTCATAAAATTCGAATAAAACCTTTTATAAAC------TTTCTTTTTCATTCAAGTGTTCTAAACTGTATT
droTak1	scf7180000410437:8078-8253 -		AGGGTATTTATATGGCTTCCTATATACTGGGTCTTCATGTTTTGTTTGTATTGAATGTTTAATAGTACTTGTAAAAGTCAAATTCTCTCCTTCCTTGTACTGTATGTCATTGTATTCAAATAAAAGTTTCTTTAAATTTTCTTTTTCTTCCTCATTCAAATGTTCTAATCTGTATT
droEle1	scf7180000489458:2926-3101 +		AGGGTACTTATAAGGTTTTTTATAGATAGGGTCTTCATGTTTGGTTTGAATAGAATGTTTGATCGTACTTGTGAAGGTCAGATTTTCGCCTTCTTTGTACTGAATGTCATTATATTCAAATAAGACTTTTTTCAAACATTCTTTTTCCTCTTCGTTTAAATGCTCTAATCTAAATT
droRho1	scf7180000776648:8886-9061 +		AGGGTACTTATAAGGTTTCTTATAAATAGGGTCCTCATGTTTGGTTTGAATAGAATGCTTGAAAGTACTTGTGAAAGTCAAATTTTCGCCTTCTTTGTACTGAATATCTTTGTATTCAAATAAAACCCTTTTCAAGCATTATTTTTCTTCTTCGTTTAAATGTTCTAGTCTGAATT
droFic1	scf7180000453204:22061-22236 -		TGGATATTTGTATGGCTTCTTATATATTGGGTCCTCGTGTTTTGTTTGTATTGAATGCTTTATTGTACTAGTAAAAGTCAAATTTTCACCTTCCTTGTACTGAATGTCTTTAAATTCAAACAAAACCTTTTTTAATTTTTCTTTCTCTTCCTCATTTAAATGTTCAAGACGGAATT
droKik1	scf7180000300217:168-343 -		GGGATACTTATAAGGTTTTCGGTAAACTGGATCTTCGTGTTGAGTTTGAATGACGTGCTTAATTGTACTTGTGAAAGTCAAATTTTCACTTTCCATGTACTGAATGTCCCTATATTCATAGAGAACCTTCTTTAAGCACTCAATTTCTTCAACATTTAGATGTTCGAGTCTGTACT
droAna3	scaffold_5978:847-1003 -		GGGGTATTTATAAGGTTTTTTATAAATAGGATCTTCATTTTTGGTATGGATTGAATGTTTTATAGCACTGGTAAAGGTCAAAATTTCACCTTCCCTGTACTGGATAT-------------------GTTATTTAATTTAGTTCTTTCTTCTTTATTAAGATGATTTATTCGAAATT
droBip1	scf7180000395940:177-352 -		GGGGTATTTATAAGGTTTTTTGTAAATAGGATCTTCATGTTTGGTTTGGATTGAATGTTTTATGGCACTGGTAAAGGTCAAATTTTCACCTTCCCTGTACTGGATATCACTAAATTCAAATAAAATGTTATTTAATTTAGTTCTTTCTTCTTCATTTAGATGATTTATTCTAAATT
dp5	4_group2:967973-968147 +		AGCATACTTATATGGTCGACGATATACAGGATCTTCGTGGTGGGTTTTAATTTCGTGCTTTATAGTACTAGTGAAGGTCAAAATGTCACCTTCT-TCTACTGCACGTCCTTAAATTCATAGAGAACTTTCTTTAGTTTCTCCTTTTCTTCGTCATTTAGATTTTCCAACCTTAACT
droPer2	scaffold_2404:1882-2057 -		AGCATATTTATATGGTTGACGATATACAGGATCTTCGTGATGGGTTTTAATTTCGTGCTTTATAGTACTAGTGAAGGTCAAAATGTCACCTTCTTTATACTGCACGTCCTTAAATTCATAGAGAACTTTCTTTAGTTTCTCCTTTTCTTCGTCATTTAGATGTTCCAACCTTAGCT
droWil2	scf2_1100000004736:56085-56248 +		GGGATATTTGTATGGACGTTTATAAATTGGGTCCTCATGTTTTGTATGAAAAGAGTGCTTTATTGTACTCGTAAAAGTCAAATTTTTACCTTCGCGGTACTGAATGTCACTGAATTCGTACAAGACTTTTTTAAGTTTTTGAATTCCTTCGTTGTTTACTC------------ATA
droVir3	scaffold_12912:203087-203257 -		AGGATATTTGTATGGACGCTTGTATATTGGGTCCTCATGTTTTGTTAGAATTTTGTGTTTAATTGTACTAGTGAAAGTCAAATTGTCACCTTCATGGTACTGGATATCACGAAATTCGTGTAAAACTT-----ATTTTTTCTTTTTCTTCTGAGTTTAGGTGTTCTAGCCTAAACT
droMoj3	scaffold_6473:15283151-15283326 +		AGGGTATTTATAAGGTTTTTTATAAATAACGCCTTCATGTTTTATATGGATCGAGTGTTTTATCGTACTAGTAAAGGTCAAATTTTCACCTTCACGGTACTGGATATCACTGAACTCAAATAACACCTTTTTTAATTTTTCGGTTTCTTCTGGGTTTAAGTGATCTAATCGATATT
droGri2	scaffold_15116:705494-705658 -		TGGATATTTATATGGTTTCTTATAACAAGGGTCCTCATTTTTTGTATTGATAACGTGTTTTACAGTATTTGTGAAAGTCAAATTGTCACTCTCTTTATACTGAATATCGCTAAATTCAAACAAAATGT-----------TTGTTTTCTTCTGTATTTAGGTGTTCTAATCTGAACT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

GTGGTAGTTATATGGTTTTTTATAAATATGGTCTTCGTGTTTTGTATGAATAGAGTGCTTAATCGTACTTGCGAAGGTCAAATTTTCTCCTTCCTTGTACTGAATATCACTGTATTCGAGCGAAA---------GTTGTTCCATTTCTGCTGTATTTAGGTGTTCTAATCTGAATA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................TCCTTGTACTGAATATCACTGTATT............................................................	25	4	12.50	50	50	0	0	0	0	0	0
..........................................................................................TTCCTTGTACTGAATATCACTGTATT............................................................	26	4	9.50	38	38	0	0	0	0	0	0
...........................................................................................TCCTTGTACTGAATATCACTGTAT.............................................................	24	4	3.75	15	15	0	0	0	0	0	0
..........................................................................................TTCCTTGTACTGAATATCACTGTAT.............................................................	25	4	3.50	14	13	0	0	0	0	1	0
.................................TTCGTGTTTTGTATGAATAGAGTGC......................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
............................................................................................CCTTGTACTGAATATCACTGTATT............................................................	24	4	0.75	3	3	0	0	0	0	0	0
...........................................................................................TCCTTGTACTGAATATCACTGTA..............................................................	23	4	0.50	2	2	0	0	0	0	0	0
............................................................................................CCTTGTACTGAATATCACTGTAT.............................................................	23	4	0.50	2	2	0	0	0	0	0	0
..........................................................................................TTCCTTGTACTGAATATCACTGTA..............................................................	24	4	0.50	2	2	0	0	0	0	0	0
................................................................................................................................................TTCTGCTGTATTTAGGTGTTCAT.........	23	3	0.33	1	1	0	0	0	0	0	0
.........................................................................................CTTCCTTGTACTGAATATCACT.................................................................	22	4	0.25	1	1	0	0	0	0	0	0
...........................................................................................TCCTTGTACTGAATATCACTG................................................................	21	4	0.25	1	1	0	0	0	0	0	0
........................................................................................CCTTCCTTGTACTGAATATCACTGTATT............................................................	28	4	0.25	1	1	0	0	0	0	0	0
........................................................................................CCTTCCTTGTACTGAATATCACTG................................................................	24	4	0.25	1	1	0	0	0	0	0	0
...........................................................................................TCCTTGTACTGAATATCACTGT...............................................................	22	4	0.25	1	1	0	0	0	0	0	0
.................................TTCGTGTTTTGTATGAATAGAGTG.......................................................................................................................	24	5	0.20	1	1	0	0	0	0	0	0
................................................................................................GTACTGAATATCACTGTATT............................................................	20	20	0.05	1	1	0	0	0	0	0	0

droYak3

GGGGTACTTATATTGTTTTTTATAGATAGGGTCTTCGTGTTTTGTATGAATAGAATGTTTGATCGTACTTGTGA--GTCAAATTTTCACCTTCTTTGTACAGAATATCATTGTATTCAAGCAGAACGG---AAAGTTGTTCCCTTTCTTCTGTATTCAGATGTTCTAATCTGAATA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................TGTTCCCTTTCTTCTGTATTCAGATGT.............	27	3	5.33	16	0	1	0	0	0	0	0	0	0	0	15
..........................................................................................................................................TTCCCTTTCTTCTGTATTCAGATGTTC...........	27	3	4.33	13	0	0	0	0	0	0	0	0	0	0	13
........................................................................................................................................TGTTCCCTTTCTTCTGTATTCAGATG..............	26	3	3.67	11	0	4	0	0	0	0	0	0	0	0	7
......................................................................................................................................................TGTATTCAGATGTTCTAATCTGAATA	26	3	2.33	7	0	1	0	0	0	0	0	0	0	0	6
...........................................................................................................................................TCCCTTTCTTCTGTATTCAGATGTT............	25	3	1.33	4	0	0	0	0	0	0	0	0	0	0	4
...........................................................................................................................................TCCCTTTCTTCTGTATTCAGATGTTC...........	26	3	1.00	3	0	3	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTCTTCTGTATTCAGATGTTCTAATCT.....	27	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TTCTGTATTCAGATGTTCTAATCTGA...	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
.................................TTCGTGTTTTGTATGAATAGAATGTT.....................................................................................................................	26	20	0.45	9	0	8	0	0	0	0	1	0	0	0	0
..............................................TGAATAGAATGTTTGATCGTACTTG.........................................................................................................	25	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
............................................TATGAATAGAATGTTTGATCGTACT...........................................................................................................	25	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TCTGTATTCAGATGTTCTAATCTGAA..	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTGTTCCCTTTCTTCTGTATTCAGA................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TATTCAGATGTTCTAATCTGA...	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TTCTGTATTCAGATGTTCTAATCTGAA..	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TCTTCTGTATTCAGATGTTCTAATCTG....	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TCTGTATTCAGATGTTCTAATCTGA...	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTCTTCTGTATTCAGATGTTCTAATCTG....	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CTGTATTCAGATGTTCTAATCTGA...	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TGTATTCAGATGTTCTAATCTG....	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTCTTCTGTATTCAGATGTTCTAATC......	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCCCTTTCTTCTGTATTCAGATGT.............	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...............................TCTTCGTGTTTTGTATGAATAGAA.........................................................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
...............................TCTTCGTGTTTTGTATGAATAGAATGTT.....................................................................................................................	28	18	0.11	2	0	2	0	0	0	0	0	0	0	0	0
...............................TCTTCGTGTTTTGTATGAATAGAATG.......................................................................................................................	26	18	0.11	2	0	2	0	0	0	0	0	0	0	0	0
.........................................TTGTATGAATAGAATGTTTGATCGTA.............................................................................................................	26	19	0.11	2	0	1	0	0	0	0	1	0	0	0	0
...................................CGTGTTTTGTATGAATAGAATGTT.....................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.................................TTCGTGTTTTGTATGAATAGAATG.......................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................TATGAATAGAATGTTTGATCGTACTTG.........................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..................................TCGTGTTTTGTATGAATAGAATGTT.....................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................AAAGTTGTTCCCTTTCTTCTGTAT.....................	24	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TGTTTTGTATGAATAGAATGTTTGAT.................................................................................................................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TGTTTTGTATGAATAGAATGTTTGA..................................................................................................................	25	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
..........................................TGTATGAATAGAATGTTTGATCGTAC............................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
..........................................TGTATGAATAGAATGTTTGATCGTACT...........................................................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.......................................TTTTGTATGAATAGAATGTTTGATCG...............................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...............................TCTTCGTGTTTTGTATGAATAGAAT........................................................................................................................	25	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
................................CTTCGTGTTTTGTATGAA..............................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................TGAATAGAATGTTTGATCGTACT...........................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................TCGTGTTTTGTATGAATAGAATGTTT....................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droSec2

GGGGTATTTATATGGTTTTTTATAGATAGGGTCTTCGTGTTTTGTATGAATAGAATGTTTAATCGTACTTGTGAAGGTCAAAGTTTCACCTTCTTTGTACTGAATATCACGGTATTCAAGCAAAACGTGGGAAAGTTGCTCCCTTTCTTCTGTATTTAGATGTTCTAATCTGAATA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................TTGTACTGAATATCACGGTATTCA..........................................................	24	14	0.43	6	6	0	0	0
............................................................................................................................................................TAGATGTTCTAATCTGAAT.	19	10	0.20	2	2	0	0	0
.................................................................TACTTGTGAAGGTCAAAGTTTCA........................................................................................	23	6	0.17	1	0	0	1	0
...................TTATAGATAGGGTCTTCGTGTTTTGTA..................................................................................................................................	27	12	0.17	2	1	0	0	1
.................................................................TACTTGTGAAGGTCAAAGTTTCACCTT....................................................................................	27	6	0.17	1	0	0	1	0
.................................................................TACTTGTGAAGGTCAAAGTTTCACCT.....................................................................................	26	6	0.17	1	1	0	0	0
.................................................................TACTTGTGAAGGTCAAAGTTTCACC......................................................................................	25	6	0.17	1	1	0	0	0
...................TTATAGATAGGGTCTTCGTGTTT......................................................................................................................................	23	13	0.15	2	0	0	2	0
..............................................................................................TTGTACTGAATATCACGGTATTCAAGC.......................................................	27	7	0.14	1	1	0	0	0
................................................................................................................TATTCAAGCAAAACGTGGGAAAG.........................................	23	8	0.13	1	1	0	0	0
.........................................TTGTATGAATAGAATGTTTAATCGTAC............................................................................................................	27	9	0.11	1	1	0	0	0
...........................................................TAATCGTACTTGTGAAGGTCAAAGT............................................................................................	25	10	0.10	1	1	0	0	0
.......................................................TGTTTAATCGTACTTGTGAAGGTCAA...............................................................................................	26	10	0.10	1	0	0	1	0
.......................................................TGTTTAATCGTACTTGTGAAGGTC.................................................................................................	24	10	0.10	1	1	0	0	0
................................................................GTACTTGTGAAGGTCAAAGT............................................................................................	20	11	0.09	1	1	0	0	0
..................TTTATAGATAGGGTCTTCGTGTTT......................................................................................................................................	24	13	0.08	1	1	0	0	0
...................TTATAGATAGGGTCTTCGTGTT.......................................................................................................................................	22	13	0.08	1	1	0	0	0
......................TAGATAGGGTCTTCGTGTTTTGTATGAA..............................................................................................................................	28	14	0.07	1	1	0	0	0
...............................................................................................TGTACTGAATATCACGGTATTCA..........................................................	23	14	0.07	1	1	0	0	0
....................TATAGATAGGGTCTTCGTGTT.......................................................................................................................................	21	15	0.07	1	1	0	0	0
..............................................................................................TTGTACTGAATATCACGGTATT............................................................	22	15	0.07	1	1	0	0	0

droSim2

AGGGTATTTATACGGTTTTTTATAGATAGGGTCTTCGTGTTTTGTATGAATGGAATGTTTAATCGTACTCGTGAAGGTCAAAGTTTCACCTTCTTTGTACTGAATATCACGGTATTCAAGCAAAACGTGGGAAAGTTGCTCCCTTTCTTCTGTATTTAGATGTTCTAATCTAAATA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................CGTGTTTTGTATGAATGGAATGTT.....................................................................................................................	24	1	25.00	25	0	0	0	0	0	0	15	0	10	0	0	0	0	0	0	0	0
..................................................................................................................TTCAAGCAAAACGTGGGAAAGTTGC.....................................	25	2	18.00	36	0	0	0	7	0	0	0	1	8	1	19	0	0	0	0	0	0
.........................................................................................................................AAAACGTGGGAAAGTTGCTCCCTTTC.............................	26	4	17.50	70	0	0	0	0	0	0	0	0	0	0	70	0	0	0	0	0	0
...................................CGTGTTTTGTATGAATGGAATGTTTA...................................................................................................................	26	1	17.00	17	0	0	0	0	0	0	9	0	8	0	0	0	0	0	0	0	0
.................................TTCGTGTTTTGTATGAATGGAATGTT.....................................................................................................................	26	1	10.00	10	0	0	0	2	0	0	1	0	4	2	1	0	0	0	0	0	0
..........TACGGTTTTTTATAGATAGGGTCTT.............................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	3	0	5	0	0	0	0	0	0
...........................................................TAATCGTACTCGTGAAGGTCAAAGT............................................................................................	25	1	8.00	8	0	0	0	2	6	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AACGTGGGAAAGTTGCTCCCTTTC.............................	24	4	7.25	29	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0
.............................................................ATCGTACTCGTGAAGGTCAAAGTT...........................................................................................	24	1	7.00	7	0	0	0	1	0	0	2	0	4	0	0	0	0	0	0	0	0
.........................................TTGTATGAATGGAATGTTTAATCGTA.............................................................................................................	26	1	7.00	7	0	0	0	0	0	0	4	0	2	0	1	0	0	0	0	0	0
...............................................GAATGGAATGTTTAATCGTAC............................................................................................................	21	1	7.00	7	0	0	0	0	6	0	0	0	0	0	1	0	0	0	0	0	0
..................................................TGGAATGTTTAATCGTAC............................................................................................................	18	1	7.00	7	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTTGTATGAATGGAATGTTTAATCGTA.............................................................................................................	27	1	7.00	7	0	0	0	1	0	0	1	0	2	0	3	0	0	0	0	0	0
......................TAGATAGGGTCTTCGTGTTTTGTATGAA..............................................................................................................................	28	4	6.75	27	0	0	0	1	0	0	8	8	5	5	0	0	0	0	0	0	0
....................................GTGTTTTGTATGAATGGAATG.......................................................................................................................	21	1	6.00	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TAATCGTACTCGTGAAGGTCAAAGTT...........................................................................................	26	1	6.00	6	0	0	0	1	0	0	1	0	2	1	1	0	0	0	0	0	0
...............................................GAATGGAATGTTTAATCGTACTCGTG.......................................................................................................	26	1	6.00	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TGAATGGAATGTTTAATCGTACTCGTGA......................................................................................................	28	1	5.00	5	0	0	0	0	0	0	3	0	0	0	0	0	0	2	0	0	0
............................................................................................................................ACGTGGGAAAGTTGCTCCCTTTC.............................	23	4	5.00	20	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0
........TATACGGTTTTTTATAGATAGGGTCTT.............................................................................................................................................	27	1	5.00	5	0	0	2	1	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................TTCTTTGTACTGAATATCACGGTA..............................................................	24	3	4.00	12	0	0	0	0	0	0	7	2	2	1	0	0	0	0	0	0	0
...................................CGTGTTTTGTATGAATGGAATGTTT....................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0
.................................................ATGGAATGTTTAATCGTA.............................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..................................................TGGAATGTTTAATCGTACTCGTGA......................................................................................................	24	1	4.00	4	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................TCGTGAAGGTCAAAGTTTCACCTTC...................................................................................	25	1	4.00	4	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................TAGGGTCTTCGTGTTTTGTATGAATGGAA.........................................................................................................................	29	1	3.00	3	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0
.................................................................TACTCGTGAAGGTCAAAGTTTCAC.......................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................TGTTTAATCGTACTCGTGAAGGTCAA...............................................................................................	26	1	3.00	3	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0
........TATACGGTTTTTTATAGATAGGGTC...............................................................................................................................................	25	1	3.00	3	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................AAACGTGGGAAAGTTGCTCCCTTTC.............................	25	4	3.00	12	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0
...................................................................................................................TCAAGCAAAACGTGGGAAAGTTGC.....................................	24	2	3.00	6	0	0	0	1	0	0	2	0	0	0	3	0	0	0	0	0	0
.............................................................ATCGTACTCGTGAAGGTCAAAGTTTC.........................................................................................	26	1	3.00	3	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0
........................................................................................................TATCACGGTATTCAAGCAAAACG.................................................	23	1	3.00	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
..........TACGGTTTTTTATAGATAGGGTC...............................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................TGTATGAATGGAATGTTTAATCGTA.............................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0
....................................................................................TTCACCTTCTTTGTACTG..........................................................................	18	4	3.00	12	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTCAAGCAAAACGTGGGAAAGTTG......................................	24	2	3.00	6	0	0	0	1	0	0	0	0	0	0	5	0	0	0	0	0	0
..................................................................................................................TTCAAGCAAAACGTGGGAAAGT........................................	22	2	2.50	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................TAGGGTCTTCGTGTTTTGTATGAA..............................................................................................................................	24	7	2.14	15	0	0	0	0	0	0	6	0	5	0	4	0	0	0	0	0	0
....................................................................................................................CAAGCAAAACGTGGGAAAGTTGCTCCC.................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................ATGGAATGTTTAATCGTACTCGTGA......................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................TTGTATGAATGGAATGTTTAATCGT..............................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
............CGGTTTTTTATAGATAGGGTCTTCGTGT........................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................................TGTATGAATGGAATGTTTAATCGTACT...........................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
.................................................................TACTCGTGAAGGTCAAAGTTTCACC......................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........TATACGGTTTTTTATAGATAGGGTCT..............................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TTAATCGTACTCGTGAAGGTC.................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................TGTATGAATGGAATGTTTAATCGTAC............................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................TTTATAGATAGGGTCTTCGT..........................................................................................................................................	20	5	2.00	10	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TTTTGTATGAATGGAATGTTTAATCGTA.............................................................................................................	28	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................AAGCAAAACGTGGGAAAGTTG......................................	21	2	2.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..........TACGGTTTTTTATAGATAGGGTCTTCGT..........................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................GTGGGAAAGTTGCTCCCTTTC.............................	21	4	1.75	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
..........................................................................................TTCTTTGTACTGAATATCACGGTATT............................................................	26	3	1.67	5	0	0	0	3	0	0	0	0	1	0	0	0	0	1	0	0	0
......................TAGATAGGGTCTTCGTGTTTTGTA..................................................................................................................................	24	4	1.50	6	0	0	0	0	0	0	1	0	0	0	5	0	0	0	0	0	0
...............................................................................................................................TGGGAAAGTTGCTCCCTTTCTTC..........................	23	4	1.50	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TATTCAAGCAAAACGTGGGAAAGTTGC.....................................	27	2	1.50	3	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................TAGGGTCTTCGTGTTTTGTATGAATG............................................................................................................................	26	3	1.33	4	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0
....................TATAGATAGGGTCTTCGTGTTTTGTA..................................................................................................................................	26	4	1.25	5	0	0	0	0	0	0	0	2	0	1	2	0	0	0	0	0	0
.............................................................................................................................CGTGGGAAAGTTGCTCCCTTTC.............................	22	4	1.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................................AAACGTGGGAAAGTTGC.....................................	17	5	1.20	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
................TTTTTATAGATAGGGTCTTCGTGTT.......................................................................................................................................	25	5	1.20	6	0	0	0	0	0	0	2	0	0	2	1	0	1	0	0	0	0
...................................................................CTCGTGAAGGTCAAAGTTTCACCTTCT..................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................GTACTCGTGAAGGTCAAAGTTTCACC......................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................TGAATGGAATGTTTAATCG...............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................TATTTAGATGTTCTAATCTAAATA	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................TATGAATGGAATGTTTAATCG...............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................TGTTTTGTATGAATGGA..........................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................TTTGTATGAATGGAATGTTTAATCG...............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................TGTATTTAGATGTTCTAATCTAAATA	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AATGGAATGTTTAATCGTACTCGTGAAG....................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TGGAATGTTTAATCGTACTCGTGAAG....................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................GTGTTTTGTATGAATGGAA.........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................ATGGAATGTTTAATCG...............................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................AAGCAAAACGTGGGAAAGT........................................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................TTAATCGTACTCGTGAAGGTCAAAGT............................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................TTTTTATAGATAGGGTCTTCGTGT........................................................................................................................................	24	5	1.00	5	0	0	0	0	0	0	1	0	3	0	1	0	0	0	0	0	0
.......................................................................................................................GCAAAACGTGGGAAAGTTGCTCCC.................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................AGCAAAACGTGGGAAAGTTGCTCCCT................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................AATGGAATGTTTAATCGTACTCGTGA......................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......TTATACGGTTTTTTATAGATAGGGTC...............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................TGGAATGTTTAATCGTACTCGTGAAGG...................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................TATTCAAGCAAAACGTGGGAAAGTTG......................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
...................................................................................................................TCAAGCAAAACGTGGGAAAGTTGCTCCCT................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CAAAACGTGGGAAAGTTGCTCCCTTTC.............................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................TTTGTATGAATGGAATGTTT....................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................ATGGAATGTTTAATCGTACTC..........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................TGTATGAATGGAATGTTTAATCGT..............................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TATTCAAGCAAAACGTGGGAAAGTT.......................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................AATATCACGGTATTCAAGCAA.....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................TCGTACTCGTGAAGGTCAAAGTTTC.........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................ATGAATGGAATGTTTAATCGT..............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................AAGCAAAACGTGGGAAAGTTGCTCC..................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................ATGGAATGTTTAATCGTACTCGTGAA.....................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................ATGGAATGTTTAATCGTACTCGTG.......................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................GAATATCACGGTATTCAAGCAAAACGT................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................GTACTCGTGAAGGTCAAAGTT...........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................TGTTTTGTATGAATGGAATGTTTA...................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................GTTTTGTATGAATGGAATG.......................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TGAATGGAATGTTTAATCGTACTC..........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................TTGTACTGAATATCACGGTATTCA..........................................................	24	3	1.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ACCTTCTTTGTACTGAATATCACGGTA..............................................................	27	3	1.00	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................AACGTGGGAAAGTTGCTCCCTTTCT............................	25	4	1.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...............................................GAATGGAATGTTTAATCGTACTCGTGA......................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................TCGTGAAGGTCAAAGTTTCACC......................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................TGTTTAATCGTACTCGTGAAGGTCAAA..............................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................TTGTATGAATGGAATGTTTAA..................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................TTCGTGTTTTGTATGAATGGA..........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................TGGAATGTTTAATCGTACTCGTGAA.....................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................TTAATCGTACTCGTGAAGGTCAAAGTTT..........................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................CCTTCTTTGTACTGAATATCACGGTA..............................................................	26	3	1.00	3	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................CAAGCAAAACGTGGGAAAGTTGCTCC..................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................TCGTGAAGGTCAAAGTTTCA........................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................GTATTCAAGCAAAACGTGGGAAAGT........................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................TTTTGTATGAATGGAATGTTTAAT.................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................TGAATGGAATGTTTAATCGTA.............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........TACGGTTTTTTATAGATAGGGTCTTT............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................ATGGAATGTTTAATCGTACT...........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................ATGGAATGTTTAATC................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................TTTTGTATGAATGGAATGTTTAATCGTAC............................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TTCGTGTTTTGTATGAATGGAATGT......................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AAGCAAAACGTGGGAAAGTTGCTCCCT................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................TCGTGTTTTGTATGAATGGAA.........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................AATGTTTAATCGTACTCGTGA......................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................ATGTTTAATCGTACTCGTGAAGGTCAA...............................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................TTCAAGCAAAACGTGGGAAAGTTGCTC...................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............CGGTTTTTTATAGATAGGGTCTTCGT..........................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................CTCGTGAAGGTCAAAGTTTCACCTTC...................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GTCTTCGTGTTTTGTATGAATGGAA.........................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................ATGGAATGTTTAATCGTACTCGTGAAGGTC.................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................TGAATGGAATGTTTAATCGTACTCGTGAA.....................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................TGTTTAATCGTACTCGT........................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................TATTCAAGCAAAACGTGGGAAAGTTGCTC...................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TACGGTTTTTTATAGATAGGGT................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................CAAGCAAAACGTGGGAAAGTTGCTC...................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............TTTTTTATAGATAGGGTCTTCGTGTT.......................................................................................................................................	26	5	1.00	5	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0
.............................................ATGAATGGAATGTTTA...................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................ATGAATGGAATGTTTAATCGTACTC..........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TCACGGTATTCAAGCAAAACG.................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................TTTTGTATGAATGGAAT........................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................TGGAATGTTTAATCGTACTC..........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........TACGGTTTTTTATAGATAGGGTCTTC............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................GTACTCGTGAAGGTCAAAGT............................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................TTGTATGAATGGAATGTTTAAT.................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AAAACGTGGGAAAGTTGC.....................................	18	5	1.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.................................................................TACTCGTGAAGGTCAAAGTTTCACCTTC...................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................TTTGTATGAATGGAATGTTTAATCGTAC............................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................CGTACTCGTGAAGGTCAAAGTTTCAC.......................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................TGTATGAATGGAATGTTTAATC................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................ACTCGTGAAGGTCAAAGTTTCACC......................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................TTTTGTATGAATGGAATGTTTAATC................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................TGTTTAATCGTACTCGTGAAGGTCAAAGTT...........................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................TGGAATGTTTAATCGTACTCGTGAAGGTC.................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................TATGAATGGAATGTTTAATCGTAC............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................CTTCGTGTTTTGTATGAATGGAATGTT.....................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................TTAGATGTTCTAATCTA....	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................TTGTACTGAATATCACGGTATTCAAGCA......................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AAAACGTGGGAAAGT........................................	15	5	0.80	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...............TTTTTTATAGATAGGGTCTTCGTGT........................................................................................................................................	25	5	0.80	4	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................AACGTGGGAAAGTTGCTCCCT................................	21	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.............................................................................................................................CGTGGGAAAGTTGCTCCCTTTCTT...........................	24	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........................................................................................................................................TCCCTTTCTTCTGTATTTAGATGTTC...........	26	4	0.75	3	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0
...................TTATAGATAGGGTCTTCGTGTTTTGTA..................................................................................................................................	27	4	0.75	3	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................TGCTCCCTTTCTTCTGTATTTAGA................	24	4	0.75	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0
...........................................................................................................................AACGTGGGAAAGTTGCTCCCTTTCTT...........................	26	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............................................................................................................................ACGTGGGAAAGTTGCTCCCTTTCTT...........................	25	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................................................AAAACGTGGGAAAGTTGCTCCCT................................	23	4	0.75	3	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................TTTGTACTGAATATCACGGTATTCA..........................................................	25	3	0.67	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TCTTTGTACTGAATATCACGGTA..............................................................	23	3	0.67	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
................TTTTTATAGATAGGGTCTT.............................................................................................................................................	19	5	0.60	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............................................................................................................GGTATTCAAGCAAAACGTGGGAAAGT........................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........TATACGGTTTTTTATAGATAGGGTCTTTA...........................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................TATAGATAGGGTCTTCGTGTTTTGTATGAA..............................................................................................................................	30	4	0.50	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CAAAACGTGGGAAAGTTG......................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................AAGCAAAACGTGGGAAAGTTGC.....................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................ATAGATAGGGTCTTCGTGTTTTGTATGAA..............................................................................................................................	29	4	0.50	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
......................................................................................................................AGCAAAACGTGGGAAAGTT.......................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................AAAGTTTCACCTTCTTTGTACTGAAT.......................................................................	26	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TTTCACCTTCTTTGTACTGAA........................................................................	21	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ACGTGGGAAAGTTGCTCC..................................	18	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................AAACGTGGGAAAGTTGCTCCCTTTCT............................	26	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................TATTCAAGCAAAACGTGGGAAAG.........................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................AAAACGTGGGAAAGTTGCTCCCTTTCT............................	27	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................ATTCAAGCAAAACGTGGGAAAGT........................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................CAAAACGTGGGAAAGT........................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................TCAAGCAAAACGTGGGAAAGT........................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................TGGGAAAGTTGCTCCCTTTCT............................	21	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................CAAGCAAAACGTGGGAAAGTTGCT....................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................TCAAGCAAAACGTGGGAAAGTTGA.....................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................TATTCAAGCAAAACGTGGGAAAGT........................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................TTCAAGCAAAACGTGGGAAAG.........................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................CAAAACGTGGGAAAGTT.......................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................GTATTCAAGCAAAACGTGGGA............................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................TTCAAGCAAAACGTGGGAAAGTTGCA....................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................AACGTGGGAAAGTTGCTC...................................	18	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................TAGATAGGGTCTTCGTGTTTTGTATGA...............................................................................................................................	27	4	0.50	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................AAAACGTGGGAAAGTTGCTCCCTTT..............................	25	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................TCACCTTCTTTGTACTGAATATCACGGTA..............................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................AAGCAAAACGTGGGA............................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................ACGTGGGAAAGTTGCTCCCTTTCT............................	24	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................ATTCAAGCAAAACGTGGGAAAGTTGC.....................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................TTTTTATAGATAGGGTC...............................................................................................................................................	17	5	0.40	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............TTTTTTATAGATAGGGTCTTCGTG.........................................................................................................................................	24	5	0.40	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
..................TTTATAGATAGGGTCTTCGTGTTT......................................................................................................................................	24	5	0.40	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
................TTTTTATAGATAGGGTCTTCGTGTTT......................................................................................................................................	26	5	0.40	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.................TTTTATAGATAGGGTCTT.............................................................................................................................................	18	5	0.40	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................TTTTATAGATAGGGTCTTCGTGTTT......................................................................................................................................	25	5	0.40	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
....................TATAGATAGGGTCTTCGTGTTT......................................................................................................................................	22	5	0.40	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................TTCTTTGTACTGAATATCACGGTATTC...........................................................	27	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GTCTTCGTGTTTTGTATGAATG............................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............GTTTTTTATAGATAGGGTCTTCGTG.........................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................CACCTTCTTTGTACTGAATATCACGGT...............................................................	27	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TTCGTGTTTTGTATGAATG............................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................CTGAATATCACGGTATTCAAG........................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................AGATAGGGTCTTCGTGTTTTGTATGAA..............................................................................................................................	27	6	0.33	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..................................................TGGAATGTTTAATCG...............................................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............GTTTTTTATAGATAGGGTCTT.............................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................TTGTACTGAATATCACGGTATTC...........................................................	23	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TGGAATGTTTAATCGT..............................................................................................................	16	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................TCTTTGTACTGAATATCACGGTATT............................................................	25	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TCTTCTGTATTTAGATGTTCTAATC......	25	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................AGTTTCACCTTCTTTGT..............................................................................	17	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................TAGATAGGGTCTTCGTGTTTTGT...................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................TAGATAGGGTCTTCGTGTTTTGTT..................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................TAGATAGGGTCTTCGTGTTTTGTAA.................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................TTCTTCTGTATTTAGATGTTCTAATC......	26	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................GCTCCCTTTCTTCTGTATTTAGATGT.............	26	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TTCACCTTCTTTGTACTGAATATCACG.................................................................	27	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................CCCTTTCTTCTGTATTTAGATGTTC...........	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................CGTGGGAAAGTTGCTCCCTTTCTTC..........................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................TCACCTTCTTTGTACTGAATATCACG.................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................AAAACGTGGGAAAGTTGCTCCCTT...............................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................AACGTGGGAAAGTTGCTCCCTTTCTTC..........................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................TGCTCCCTTTCTTCTGTATTTAGATGT.............	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................TGCTCCCTTTCTTCTGTATTTAGATG..............	26	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................AAAACGTGGGAAAGTTGCTCCCTTTCTT...........................	28	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................GTTGCTCCCTTTCTTCTGT.......................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................TGGGAAAGTTGCTCCCTTTC.............................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................AAAACGTGGGAAAGTTGCTCCCC................................	23	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TCACCTTCTTTGTACTGAATATCACGG................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

GGGGTATTTATATGGTTTTTTACAGATAGGGTCTTCGTGTTTTGTATGAATAGAATGCTTAATCGTACTTGTAAAGGTCAAAGTTTCACTTTCTTTGTACTGAATATCACGGTATTCAAGCAAAACATGGGAAAGTTGCTCCCTTTCTTCTGTATTTTGATGTTCTAATCTAAATA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................TTCAAGCAAAACATGGGAAAGTTGC.....................................	25	4	114.75	459	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	3	3	0	0	0	0	0	5	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	1	0	0	4	1	0	4	2	0	4	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	7	0	0	5	0	2	0	9	0	0	0	0	0	2	7	0	6	0	8	0	3	0	0	0	10	0	14	9	0	0	6	0	1	0	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	18	40	8	34	0	0	0	0	0	0	60	55	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	4	8	0	0	0	0	0	0
.......................................................TGCTTAATCGTACTTGTAAAGGTC.................................................................................................	24	1	30.00	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	5	1	0	1	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
...........................................................TAATCGTACTTGTAAAGGT..................................................................................................	19	2	23.00	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	10	5	3	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TATTCAAGCAAAACATGGGAAAGTTGC.....................................	27	4	20.00	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	1	1	1	0	1	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	6	4	4	11	0	0	0	0	0	0	7	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	4	0	0	0	0	0	0
..........................................TGTATGAATAGAATGCTTAATCGTA.............................................................................................................	25	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0
...................................................................................................................TCAAGCAAAACATGGGAAAGTTGC.....................................	24	4	15.25	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	9	1	2	0	0	0	0	0	0	6	14	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................AAGCAAAACATGGGAAAGTTGCTC...................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TTGTACTGAATATCACGGTATTCA..........................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ACGGTATTCAAGCAAAACATGGGAAAG.........................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TTGTACTGAATATCACGGTATTC...........................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

AGGGTATTTATATGGTTTGCGATAAACCGGATCCTCATGTTGTGTTTGAATCGAATGTTTTATTGTACTGGTGAAGGTCAAATTTTCGCCTTCCCTGTACTGAATATCTCTATATTCGTATAGGATTTTTTTCAAACTTTCGATCTCTTCACTGTTTAAGTGTTCTAATCTAAATT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGGATATTTAAATGGTTTCCAGTATA--TGATCTTCATGCTTGGTTTGAATTGAATGTTTAATAGTACTTGTAAAATTCAAATTTTCACCTTCCTTGTGCTGGATGTCATAAAATTCGAATAAAACCTTTTATAAAC------TTTCTTTTTCATTCAAGTGTTCTAAACTGTATT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGGTATTTATATGGCTTCCTATATACTGGGTCTTCATGTTTTGTTTGTATTGAATGTTTAATAGTACTTGTAAAAGTCAAATTCTCTCCTTCCTTGTACTGTATGTCATTGTATTCAAATAAAAGTTTCTTTAAATTTTCTTTTTCTTCCTCATTCAAATGTTCTAATCTGTATT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGGGTACTTATAAGGTTTTTTATAGATAGGGTCTTCATGTTTGGTTTGAATAGAATGTTTGATCGTACTTGTGAAGGTCAGATTTTCGCCTTCTTTGTACTGAATGTCATTATATTCAAATAAGACTTTTTTCAAACATTCTTTTTCCTCTTCGTTTAAATGCTCTAATCTAAATT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGGGTACTTATAAGGTTTCTTATAAATAGGGTCCTCATGTTTGGTTTGAATAGAATGCTTGAAAGTACTTGTGAAAGTCAAATTTTCGCCTTCTTTGTACTGAATATCTTTGTATTCAAATAAAACCCTTTTCAAGCATTATTTTTCTTCTTCGTTTAAATGTTCTAGTCTGAATT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGGATATTTGTATGGCTTCTTATATATTGGGTCCTCGTGTTTTGTTTGTATTGAATGCTTTATTGTACTAGTAAAAGTCAAATTTTCACCTTCCTTGTACTGAATGTCTTTAAATTCAAACAAAACCTTTTTTAATTTTTCTTTCTCTTCCTCATTTAAATGTTCAAGACGGAATT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGGATACTTATAAGGTTTTCGGTAAACTGGATCTTCGTGTTGAGTTTGAATGACGTGCTTAATTGTACTTGTGAAAGTCAAATTTTCACTTTCCATGTACTGAATGTCCCTATATTCATAGAGAACCTTCTTTAAGCACTCAATTTCTTCAACATTTAGATGTTCGAGTCTGTACT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGGGTATTTATAAGGTTTTTTATAAATAGGATCTTCATTTTTGGTATGGATTGAATGTTTTATAGCACTGGTAAAGGTCAAAATTTCACCTTCCCTGTACTGGATAT-------------------GTTATTTAATTTAGTTCTTTCTTCTTTATTAAGATGATTTATTCGAAATT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................T-------------------GTTATTTAATTTAGTTCTTTCTTCTTT.......................	28	20	0.15	3	0	3	0	0	0	0
....................................................GAATGTTTTATAGCACTGGTAAAGGTC.................................................................................................	27	20	0.15	3	0	3	0	0	0	0
..................................................TTGAATGTTTTATAGCACTGGTAAAGG...................................................................................................	27	20	0.10	2	0	0	2	0	0	0
...................................................TGAATGTTTTATAGCACTGGTAAAGGC..................................................................................................	27	20	0.10	2	0	2	0	0	0	0
...................................................................................................................................TTAATTTAGTTCTTTCTTCTTTATT....................	25	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................................TAGTTCTTTCTTCTTTATTAAGATGATT...........	28	20	0.05	1	0	1	0	0	0	0

droBip1

GGGGTATTTATAAGGTTTTTTGTAAATAGGATCTTCATGTTTGGTTTGGATTGAATGTTTTATGGCACTGGTAAAGGTCAAATTTTCACCTTCCCTGTACTGGATATCACTAAATTCAAATAAAATGTTATTTAATTTAGTTCTTTCTTCTTCATTTAGATGATTTATTCTAAATT	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGCATACTTATATGGTCGACGATATACAGGATCTTCGTGGTGGGTTTTAATTTCGTGCTTTATAGTACTAGTGAAGGTCAAAATGTCACCTTCT-TCTACTGCACGTCCTTAAATTCATAGAGAACTTTCTTTAGTTTCTCCTTTTCTTCGTCATTTAGATTTTCCAACCTTAACT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................TTTCTTCGTCATTTAGATTTTCCAACCT.....	28	3	6.67	20	0	13	3	0	0	0	0	4	0	0
...................................................TTCGTGCTTTATAGTACTAGTGAAGG...................................................................................................	26	6	4.00	24	0	15	0	0	0	0	0	5	4	0
..............................................................TAGTACTAGTGAAGGTCAAAATG...........................................................................................	23	9	3.78	34	0	29	0	0	0	1	2	0	2	0
...............................................................................................................................................TTTCTTCGTCATTTAGATTTTCCAACC......	27	3	1.33	4	0	4	0	0	0	0	0	0	0	0
........................................TGGGTTTTAATTTCGTGCTTTATAG...............................................................................................................	25	6	1.33	8	0	2	0	0	0	0	0	5	1	0
......................TATACAGGATCTTCGTGGTGGGTTT.................................................................................................................................	25	3	1.00	3	0	1	0	0	0	0	2	0	0	0
............................................................TATAGTACTAGTGAAGGTCAAAATG...........................................................................................	25	7	0.86	6	0	5	0	0	0	0	1	0	0	0
...................................................................................................................................TTAGTTTCTCCTTTTCTTCGTCATT....................	25	7	0.71	5	0	4	1	0	0	0	0	0	0	0
....................................................................................................................................TAGTTTCTCCTTTTCTTCGTCATT....................	24	7	0.71	5	0	3	0	0	0	0	0	2	0	0
...............................................................................................................................................TTTCTTCGTCATTTAGATTTTCCAAC.......	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
......................TATACAGGATCTTCGTGGTGG.....................................................................................................................................	21	3	0.67	2	0	1	0	0	0	0	0	0	1	0
....................................................TCGTGCTTTATAGTACTAGTGAAGG...................................................................................................	25	6	0.50	3	0	3	0	0	0	0	0	0	0	0
..............................................................TAGTACTAGTGAAGGTCAAAATGTCACCT.....................................................................................	29	9	0.44	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................GCACGTCCTTAAATTCATAGAGAACTT................................................	27	7	0.43	3	0	3	0	0	0	0	0	0	0	0
............TGGTCGACGATATACAGGATCTTCG...........................................................................................................................................	25	8	0.38	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................TTCTTCGTCATTTAGATTTTCCAACCT.....	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..................................................TTTCGTGCTTTATAGTACTAGTGAAGG...................................................................................................	27	6	0.33	2	0	1	0	0	0	0	1	0	0	0
..............................................................TAGTACTAGTGAAGGTCAAAATGT..........................................................................................	24	9	0.33	3	0	2	0	0	1	0	0	0	0	0
...................................................................................TGTCACCTTCT-TCTACTGCACGTCC...................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TTCTTCGTCATTTAGATTTTCCAACC......	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................TCTTCGTGGTGGGTTTTAATTTCG.........................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTCTTCGTCATTTAGATTTTCCAACCA.....	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................TCGTCATTTAGATTTTCCAACCT.....	23	3	0.33	1	0	0	0	0	0	0	0	1	0	0
..........................CAGGATCTTCGTGGTGGGTT..................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......TTATATGGTCGACGATATACAGGATC...............................................................................................................................................	26	9	0.33	3	1	0	0	0	0	0	1	1	0	0
..............................................................................................................................................TTTTCTTCGTCATTTAGATTTTCCAACCT.....	29	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TTCTTCGTCATTTAGATTTTCCAACCC.....	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................TTCTTCGTCATTTAGATTTTCCAA........	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................ATCTTCGTGGTGGGTTTTAATTTCGT........................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................TAGTACTAGTGAAGGTCAAAATGTC.........................................................................................	25	9	0.33	3	0	1	0	0	0	0	2	0	0	0
.......................................................................................................................................TTTCTCCTTTTCTTCGTCATTTAGATT..............	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTCTTCGTCATTTAGATTTTCCAACCTT....	29	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................TTTTCTTCGTCATTTAGATTTTCCAACC......	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................ATACAGGATCTTCGTGGTGGGTTT.................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................TAGTACTAGTGAAGGTCAAAATGTCACC......................................................................................	28	9	0.33	3	0	2	0	0	0	0	1	0	0	0
.....................ATATACAGGATCTTCGTGGTG......................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.....................ATATACAGGATCTTCGTGGTGG.....................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TCTTCGTCATTTAGATTTTCCAACC......	25	3	0.33	1	0	0	0	0	0	0	0	0	1	0
.................................................................................................TACTGCACGTCCTTAAATTCATAGAGA....................................................	27	7	0.29	2	0	2	0	0	0	0	0	0	0	0
........TATATGGTCGACGATATACAGGATC...............................................................................................................................................	25	9	0.22	2	0	2	0	0	0	0	0	0	0	0
...............................................................AGTACTAGTGAAGGTCAAAATG...........................................................................................	22	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.....................................................CGTGCTTTATAGTACTAGTGAAGG...................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................TAATTTCGTGCTTTATAGTACTAGT........................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	1	0
...................................................TTCGTGCTTTATAGTACTAGTGAA.....................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................TGCACGTCCTTAAATTCATAGAGAACTT................................................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................TTCTCCTTTTCTTCGTCATT....................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................TCTTTAGTTTCTCCTTTTCTTCGTCAT.....................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................TCTTTAGTTTCTCCTTTTCTTCGTCA......................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................TCTTTAGTTTCTCCTTTTCTTCGTC.......................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TTTCTCCTTTTCTTCGTCATT....................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................TTCTCCTTTTCTTCGTCATTT...................	21	7	0.14	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................TTAGTTTCTCCTTTTCTTCGTCATC....................	25	7	0.14	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................CTTTAGTTTCTCCTTTTCTTCGTCATT....................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TTCTTTAGTTTCTCCTTTTCTTCGT........................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................TACTGCACGTCCTTAAATTCATAGAGAA...................................................	28	7	0.14	1	0	0	0	0	0	0	0	1	0	0
................................................................................................................................TCTTTAGTTTCTCCTTTTCTTCGTCATT....................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TTCTTTAGTTTCTCCTTTTCTTCGTCA......................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................ACTTTCTTTAGTTTCTCCTTTTCTTCG.........................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................TTTCTTTAGTTTCTCCTTTTCTTCGT........................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................TTCTCCTTTTCTTCGTCATTTAC.................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................TACTGCACGTCCTTAAATTCATAGAG.....................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..........TATGGTCGACGATATACAGGATCTTCG...........................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...........ATGGTCGACGATATACAGGATCTTCG...........................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............TGGTCGACGATATACAGGATCTTCGTG.........................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..........TATGGTCGACGATATACAGGATCTTC............................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...........ATGGTCGACGATATACAGGATCTTCGTG.........................................................................................................................................	28	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................TAAATTCATAGAGAACTTTCTTTAGTT.......................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........TATATGGTCGACGATATACAGGATCT..............................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.................................................................TACTAGTGAAGGTCAAAATGTCACC......................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........TATATGGTCGACGATATACAGG..................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	0	1	0	0	0
.......TTATATGGTCGACGATATAC.....................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	1	0
.........ATATGGTCGACGATATACAGGATC...............................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.................................................................TACTAGTGAAGGTCAAAATGTCACCT.....................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..............................................................TAGTACTAGTGAAGGTCAAAATGTCA........................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........TATATGGTCGACGATATACAGGA.................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
................................................................GTACTAGTGAAGGTCAAAATGTCACCT.....................................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................TAAATTCATAGAGAACTTTCTTT...........................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
....................................................................TAGTGAAGGTCAAAATGTCACCTT....................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.....................................................................AGTGAAGGTCAAAATGTCACCTTCT-.................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..........TATGGTCGACGATATACAGGATC...............................................................................................................................................	23	11	0.09	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCATATTTATATGGTTGACGATATACAGGATCTTCGTGATGGGTTTTAATTTCGTGCTTTATAGTACTAGTGAAGGTCAAAATGTCACCTTCTTTATACTGCACGTCCTTAAATTCATAGAGAACTTTCTTTAGTTTCTCCTTTTCTTCGTCATTTAGATGTTCCAACCTTAGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................TATACAGGATCTTCGTGATGGGT...................................................................................................................................	23	20	1.55	31	0	0	0	0	0	31
................................................................................................................................TCTTTAGTTTCTCCTTTTCTTCGTCA......................	26	20	0.15	3	0	3	0	0	0	0
...............................................................................................................................................TTTCTTCGTCATTTAGATGTTCCAACC......	27	20	0.10	2	0	1	0	0	0	1
.......................ATACAGGATCTTCGTGATGGGTTT.................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................TTAGATGTTCCAACCTTAGC.	20	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................TTCTTCGTCATTTAGATGTTCCAACCT.....	27	20	0.05	1	0	1	0	0	0	0
.........................ACAGGATCTTCGTGATGGGTT..................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................TTTAGATGTTCCAACCTTAG..	20	20	0.05	1	0	1	0	0	0	0
..............................................................................................TTATACTGCACGTCCTTAAATTCATAGA......................................................	28	20	0.05	1	0	1	0	0	0	0
......................TATACAGGATCTTCGTGATGGGTTTTA...............................................................................................................................	27	20	0.05	1	0	0	0	0	0	1
.....................................................................................................GCACGTCCTTAAATTCATAGAGAACTT................................................	27	20	0.05	1	0	1	0	0	0	0
.................................................................TACTAGTGAAGGTCAAAATGTCACCTT....................................................................................	27	20	0.05	1	0	1	0	0	0	0

droWil2

GGGATATTTGTATGGACGTTTATAAATTGGGTCCTCATGTTTTGTATGAAAAGAGTGCTTTATTGTACTCGTAAAAGTCAAATTTTTACCTTCGCGGTACTGAATGTCACTGAATTCGTACAAGACTTTTTTAAGTTTTTGAATTCCTTCGTTGTTTACTC------------ATA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................TGAATTCGTACAAGACTTTTTTAAGT........................................	26	20	4.75	95	0	6	0	89	0
..........................................................................................................TCACTGAATTCGTACAAGACTTTTT.............................................	25	20	0.75	15	0	5	0	10	0
.................................................................................................TACTGAATGTCACTGAATTCGTACAAGA...................................................	28	20	0.65	13	0	13	0	0	0
...............................................................................................................GAATTCGTACAAGACTTTTTTAAGT........................................	25	20	0.40	8	0	0	0	8	0
....TATTTGTATGGACGTTTATAAATTGGG.................................................................................................................................................	27	20	0.35	7	0	3	0	4	0
...........................................................................................TCGCGGTACTGAATGTCACTGAATTCG..........................................................	27	20	0.30	6	0	6	0	0	0
..............................................................................................................TGAATTCGTACAAGACTTTTTTAAGTT.......................................	27	20	0.30	6	0	4	0	2	0
....................................................................................................TGAATGTCACTGAATTCGTACAAGA...................................................	25	20	0.30	6	0	6	0	0	0
............................................................................................CGCGGTACTGAATGTCACTGAATTCG..........................................................	26	20	0.15	3	0	3	0	0	0
........................................................................................................TGTCACTGAATTCGTACAAGACTTTT..............................................	26	20	0.15	3	0	2	0	1	0
...................................................................................TTTTACCTTCGCGGTACTGAATGTCACT.................................................................	28	7	0.14	1	0	1	0	0	0
.....................................................................................................GAATGTCACTGAATTCGTACAAGACT.................................................	26	20	0.10	2	0	2	0	0	0
..............................................................................................................TGAATTCGTACAAGACTTTTTTAAGTTT......................................	28	20	0.10	2	0	2	0	0	0
....................................................................................................TGAATGTCACTGAATTCGTACAAGACTT................................................	28	20	0.10	2	0	2	0	0	0
....................TATAAATTGGGTCCTCATGTTTTG....................................................................................................................................	24	20	0.10	2	0	0	0	2	0
....................TATAAATTGGGTCCTCATGTTTTGTA..................................................................................................................................	26	20	0.10	2	0	1	0	1	0
...........................................................................................................CACTGAATTCGTACAAGACTTTTT.............................................	24	20	0.05	1	0	0	0	1	0
....................TATAAATTGGGTCCTCATGTTTTGTATGA...............................................................................................................................	29	20	0.05	1	0	1	0	0	0
.......................................................................................ACCTTCGCGGTACTGAATGTCACTGAAT.............................................................	28	20	0.05	1	0	1	0	0	0
..................................................................................................ACTGAATGTCACTGAATTCGTACAAG....................................................	26	20	0.05	1	0	1	0	0	0
.....................ATAAATTGGGTCCTCATGTTTTGT...................................................................................................................................	24	20	0.05	1	0	0	0	1	0
....................TATAAATTGGGTCCTCATGTTTTGTAT.................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.......TTGTATGGACGTTTATAAATTGG..................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
......................TAAATTGGGTCCTCATGTTTTGTATT................................................................................................................................	26	20	0.05	1	0	0	0	1	0
............TGGACGTTTATAAATTGGGTC...............................................................................................................................................	21	20	0.05	1	0	0	0	0	1
........TGTATGGACGTTTATAAATTGGGTCC..............................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..........................................................................................................TCACTGAATTCGTACAAGACTTTTTT............................................	26	20	0.05	1	0	1	0	0	0
..................................................................................................................TTCGTACAAGACTTTTTTAAGTTTTTG...................................	27	20	0.05	1	0	1	0	0	0
..........................................................................................................TCACTGAATTCGTACAAGACTT................................................	22	20	0.05	1	0	1	0	0	0
........................................................................................................TGTCACTGAATTCGTACAAGACTTT...............................................	25	20	0.05	1	0	0	0	1	0
...................................................................................................................TCGTACAAGACTTTTTTAAGTTTTTG...................................	26	20	0.05	1	0	1	0	0	0
.......TTGTATGGACGTTTATAAATTGGGTC...............................................................................................................................................	26	20	0.05	1	0	0	0	1	0
..................................................................................................ACTGAATGTCACTGAATTCGTACAA.....................................................	25	20	0.05	1	0	1	0	0	0
....TATTTGTATGGACGTTTATAAATTGG..................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
....................TATAAATTGGGTCCTCATGTTTTGT...................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.......TTGTATGGACGTTTATAAATTGGG.................................................................................................................................................	24	20	0.05	1	0	0	0	1	0

droVir3

AGGATATTTGTATGGACGCTTGTATATTGGGTCCTCATGTTTTGTTAGAATTTTGTGTTTAATTGTACTAGTGAAAGTCAAATTGTCACCTTCATGGTACTGGATATCACGAAATTCGTGTAAAACTT-----ATTTTTTCTTTTTCTTCTGAGTTTAGGTGTTCTAGCCTAAACT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................TACTGGATATCACGAAATTCGTGTAA.....................................................	26	8	56.13	449	0	0	4	0	27	3	11	1	3	0	5	0	1	0	0	0	0	0	0	0	2	0	0	33	26	14	70	48	12	1	0	1	47	1	7	58	22	22	26	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGTATGGACGCTTGTATATTGGGTC...............................................................................................................................................	25	5	33.00	165	0	0	0	0	14	2	5	1	3	2	7	5	7	6	0	0	0	0	0	0	4	0	0	2	0	2	6	24	2	5	1	4	0	5	3	2	20	1	28	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATATTGGG.................................................................................................................................................	25	5	17.40	87	4	1	15	0	2	1	4	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	4	3	8	2	2	3	0	0	0	4	0	0	3	3	4	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	4	0
.................................................................................................TACTGGATATCACGAAATTCGTGTAAAAC..................................................	29	6	14.83	89	0	0	1	0	2	0	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	7	8	26	16	2	0	1	0	2	0	1	6	9	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGTATGGACGCTTGTATATTGGGTCC..............................................................................................................................................	26	5	11.80	59	0	0	0	0	4	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	3	2	23	1	0	0	2	4	0	3	2	8	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TACTGGATATCACGAAATTCGTGTAAA....................................................	27	6	10.33	62	0	0	0	0	2	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	4	3	3	7	9	1	0	0	0	8	0	0	8	8	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TACTGGATATCACGAAATTCGTGTA......................................................	25	8	7.00	56	0	0	2	0	3	1	0	0	1	0	2	0	3	0	0	0	0	0	0	0	0	0	0	2	1	5	7	5	2	0	0	0	6	0	1	2	6	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TACTGGATATCACGAAATTCGTGTAAAA...................................................	28	6	5.33	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	8	6	0	0	0	0	4	0	2	3	5	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGTATGGACGCTTGTATATTGGG.................................................................................................................................................	23	5	5.00	25	0	0	0	0	6	0	0	1	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	1	0	0	2	2	0	2	0	1	0	1	1	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATATTGG..................................................................................................................................................	24	5	4.20	21	0	0	15	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0
........TGTATGGACGCTTGTATATTGGGT................................................................................................................................................	24	5	3.00	15	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	1	2	3	0	0	0	0	1	1	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATATTGGGTC...............................................................................................................................................	27	5	2.60	13	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0
.................................................................................................TACTGGATATCACGAAATTCGTGT.......................................................	24	10	2.30	23	0	0	3	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	3	2	0	0	0	0	3	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATATTG...................................................................................................................................................	23	5	2.00	10	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
........TGTATGGACGCTTGTATATTGGGTCCTC............................................................................................................................................	28	5	1.80	9	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	2	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGTATGGACGCTTGTATATTGGGTCCTCA...........................................................................................................................................	29	5	1.80	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	4	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTGTATGGACGCTTGTATATTGGG.................................................................................................................................................	24	5	1.60	8	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTGTATGGACGCTTGTATATTGGGTC...............................................................................................................................................	26	5	1.40	7	0	0	1	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TGTTAGAATTTTGTGTTTAA..................................................................................................................	20	20	1.15	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATATTGGGT................................................................................................................................................	26	5	1.00	5	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGTATGGACGCTTGTATATTGG..................................................................................................................................................	22	5	0.80	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TGTTAGAATTTTGTGTTTAATT................................................................................................................	22	20	0.80	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGTATGGACGCTTGTATATTG...................................................................................................................................................	21	5	0.60	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATATTTTT.................................................................................................................................................	25	5	0.60	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.............................................................................................................................................TTTTTCTTCTGAGTTTAGGTGT.............	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................TACTGGATATCACGAAATTCGTGTAAAC...................................................	28	7	0.43	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATATTGGGTCC..............................................................................................................................................	28	5	0.40	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTAT.......................................................................................................................................................	19	5	0.40	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTGTATGGACGCTTGTATATTG...................................................................................................................................................	22	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TGGTACTGGATATCACGAAATTCGTGT.......................................................	27	10	0.40	4	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGTATGGACGCTTGTATATTGGGTCCT.............................................................................................................................................	27	5	0.40	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TATTTGTATGGACGCTTGTATATTG...................................................................................................................................................	25	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................ACTGGATATCACGAAATTCGTGTAAAAC..................................................	28	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TGGATATCACGAAATTCGTGTAAAAC..................................................	26	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TTAGAATTTTGTGTTTAATTGTAC............................................................................................................	24	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTGTATGGACGCTTGTATATTGGGTCC..............................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TAGTGAAAGTCAAATTGTCACCTTCA..................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGTATGGACGCTTGTATATT....................................................................................................................................................	20	5	0.20	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATGGACGCTTGTATATTGGGTCCTCA...........................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATA......................................................................................................................................................	20	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TATTTGTATGGACGCTTGTATAT.....................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATAT.....................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATATTGGGTA...............................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATTTGTATGGACGCTTGTATATTGGG.................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGTATGGACGCTTGTATATTGGGTT...............................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TTGTTAGAATTTTGTGTTTAATTGTA.............................................................................................................	26	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TAGTGAAAGTCAAATTGTCACCTTC...................................................................................	25	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTGTATGGACGCTTGTATATTGG..................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATATT....................................................................................................................................................	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTGGATATCACGAAATTCGTGTAAAAC..................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGTATGGACGCTTGTATATTGGGTCT..............................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TACTGGATATCACGAAATTCGTGTAAAAA..................................................	29	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GTACTGGATATCACGAAATTCGTGTAAA....................................................	28	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TCACCTTCATGGTACTGGATATCACGA................................................................	27	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTGGGTCCTCATGTTTTGTTAGAATTT...........................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TCCTCATGTTTTGTTAGAATTTTGTGTT.....................................................................................................................	28	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TACTGGATATCACGAAATTCGTGTAAACA..................................................	29	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTGTATGGACGCTTGTATATTGGGAAA..............................................................................................................................................	28	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GTACTGGATATCACGAAATTCGTGTAA.....................................................	27	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................ACTGGATATCACGAAATTCGTGTA......................................................	24	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TGGATATCACGAAATTCGTGTAA.....................................................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TACTGGATATCACGAAATTCGTGTAT.....................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TACTGGATATCACGAAATTCGTGTAAC....................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TACTGGATATCACGAAATTCGTG........................................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................ATTTTGTGTTTAATTGTAC............................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TGGTACTGGATATCACGAAATTCGT.........................................................	25	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TGTTAGAATTTTGTGTTTA...................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TACTGGATATCACGAAATTCGT.........................................................	22	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TGGATATCACGAAATTCGTGTC......................................................	22	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TGTGTTTAATTGTACTAGTGAAAGTCA................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TGTTAGAATTTTGTGTTTAATTGTACT...........................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTGTGTTTAATTGTACTAGTGAAAGTCA................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TTTTGTGTTTAATTGTAC............................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGAAAGTCAAATTGTCACCTTCATGGTAC............................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AAGTCAAATTGTCACCTTCATGG...............................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TGTCACCTTCATGGTACTGGATATCACG.................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TGTTAGAATTTTGTGTTTAATTGT..............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TGTTTTGTTAGAATTTTGTGT......................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TTTGTGTTTAATTGTACT...........................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TGTTTTGTTAGAATTTTGTGTTTAATTG...............................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CCTTCATGGTACTGGATATCACGAAA..............................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AATTTTGTGTTTAATTGTACTAGTGA......................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TGTTAGAATTTTGTGTTTAATTGTA.............................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................TCCTCATGTTTTGTTAGAAT.............................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
............................................................................GTCAAATTGTCACCTTCATGGTACTGG.........................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TAGAATTTTGTGTTTAATTGTACTAG.........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TTGTTAGAATTTTGTGTTTAATTGTAC............................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TCACCTTCATGGTACTGGATATCACGAAA..............................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TTTTGTGTTTAATTGTACT...........................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TGTTTAATTGTACTAGTGAAA....................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGGGTATTTATAAGGTTTTTTATAAATAACGCCTTCATGTTTTATATGGATCGAGTGTTTTATCGTACTAGTAAAGGTCAAATTTTCACCTTCACGGTACTGGATATCACTGAACTCAAATAACACCTTTTTTAATTTTTCGGTTTCTTCTGGGTTTAAGTGATCTAATCGATATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................TGGATATCACTGAACTCAAATAACACC.................................................	27	1	6.00	6	6	0	0	0	0	0
...................................................................................................CTGGATATCACTGAACTCAAATAACACC.................................................	28	1	3.00	3	3	0	0	0	0	0
...................................................................................................................TCAAATAACACCTTTTTTAATTTTTCGGT................................	29	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................................TCTGGGTTTAAGTGATCTAATCGATA..	26	1	3.00	3	2	0	0	0	0	1
..................................................TCGAGTGTTTTATCGTACTAGTAAAGG...................................................................................................	27	1	2.00	2	2	0	0	0	0	0
..............................................................TCGTACTAGTAAAGGTCAAATTTTCACC......................................................................................	28	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................TCGGTTTCTTCTGGGTTTAAGTGATC...........	26	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................TCTTCTGGGTTTAAGTGATCTAATCGATA..	29	1	2.00	2	1	0	0	0	0	1
......................TAAATAACGCCTTCATGTTTTATATGGA..............................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.................................TTCATGTTTTATATGGATCGAGTGT......................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
........................................TTTATATGGATCGAGTGTTTTATCGTAC............................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................TTTCGGTTTCTTCTGGGTTTAAGTGA.............	26	1	1.00	1	1	0	0	0	0	0
..........................................................................................TTCACGGTACTGGATATCACTGAACTCA..........................................................	28	1	1.00	1	1	0	0	0	0	0
.....................................................................................TCACCTTCACGGTACTGGATATCACTGAA..............................................................	29	1	1.00	1	1	0	0	0	0	0
..................TTTATAAATAACGCCTTCATGTTTTA....................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................TTCACCTTCACGGTACTGGATATCAC..................................................................	26	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................TTTTTTAATTTTTCGGTTTCTTCTGGG......................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................TTCTGGGTTTAAGTGATCTAATCGATAT.	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................TGAACTCAAATAACACCTTTTTTAA.........................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................TTCACGGTACTGGATATCACTGAACTCAA.........................................................	29	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................TAATTTTTCGGTTTCTTCTGGGTTTAAG................	28	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................TTTTTTAATTTTTCGGTTTCTTCTGGGT.....................	28	1	1.00	1	1	0	0	0	0	0
..................................TCATGTTTTATATGGATCGAGTGT......................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................TCTGGGTTTAAGTGATCT..........	18	1	1.00	1	1	0	0	0	0	0
..........................................................TTTATCGTACTAGTAAAGGTCAAAT.............................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................TATCGTACTAGTAAAGGTCAAATTTTCAC.......................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................TCATGTTTTATATGGATCGAGTGTTT....................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................TACTGGATATCACTGAACTCAAATAACAC..................................................	29	1	1.00	1	1	0	0	0	0	0
.............................CGCCTTCATGTTTTATATGGATCGAG.........................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....................................TGTTTTATATGGATCGAGTGTTTT...................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................CTTTTTTAATTTTTCGGTTTCTTC..........................	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................TTCGGTTTCTTCTGGGTTTAAGTGATC...........	27	1	1.00	1	1	0	0	0	0	0
...........................................................TTATCGTACTAGTAAAGGTCAAATTT...........................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................................................TTTATCGTACTAGTAAAGGTCAAATTT...........................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................TCACGGTACTGGATATCACTGAAC.............................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................TTCTGGGTTTAAGTGATCTAATCGATA..	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................GGGTTTAAGTGATCTAATCGATAT.	24	1	1.00	1	1	0	0	0	0	0
........................................................GTTTTATCGTACTAGTAAAGGTC.................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................GAGTGTTTTATCGTACTAGTAAAGGTC.................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................TTATATGGATCGAGTGTTTTATCGTAC............................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................TATGGATCGAGTGTTTTATCGTACTAG.........................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................TTTTTCGGTTTCTTCTGGGTTTAAGT...............	26	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................TTCTTCTGGGTTTAAGTGATCTAATCGA....	28	1	1.00	1	1	0	0	0	0	0
...............................................................................AAATTTTCACCTTCACGGTACTGGATA......................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................GAACTCAAATAACACCTTTTTTAAT........................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................TTTCTTCTGGGTTTAAGTGATCTA.........	24	1	1.00	1	1	0	0	0	0	0
............................................................TATCGTACTAGTAAAGGTCAAATTT...........................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................TTCACGGTACTGGATATCACTGAAC.............................................................	25	1	1.00	1	1	0	0	0	0	0
.......TTATAAGGTTTTTTATAAATAACGCC...............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................................CGAGTGTTTTATCGTACTAGTAAAGGTC.................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................TTTATCGTACTAGTAAAGGTCAAATT............................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................ACTGGATATCACTGAACTCAAATAACACC.................................................	29	1	1.00	1	1	0	0	0	0	0
..............................................................................................................TGAACTCAAATAACACCTTTTTTAATTTT.....................................	29	1	1.00	1	1	0	0	0	0	0
.....................................................................................................GGATATCACTGAACTCAAATAACACC.................................................	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................TTAATTTTTCGGTTTCTTCTGGGTT....................	25	1	1.00	1	0	0	0	0	0	1
....................................................................................................TGGATATCACTGAACTCAAATAACACCT................................................	28	1	1.00	1	1	0	0	0	0	0
.................................................................TACTAGTAAAGGTCAAATTTTCACC......................................................................................	25	13	0.15	2	2	0	0	0	0	0
.................................................................TACTAGTAAAGGTCAAATTTTCACCTT....................................................................................	27	12	0.08	1	1	0	0	0	0	0
..................................................................ACTAGTAAAGGTCAAATTTTCACC......................................................................................	24	13	0.08	1	1	0	0	0	0	0
...................................................................CTAGTAAAGGTCAAATTTTCACC......................................................................................	23	13	0.08	1	1	0	0	0	0	0
....................................................................TAGTAAAGGTCAAATTTTCACC......................................................................................	22	14	0.07	1	1	0	0	0	0	0
......................................................................GTAAAGGTCAAATTTTCACC......................................................................................	20	14	0.07	1	1	0	0	0	0	0

droGri2

TGGATATTTATATGGTTTCTTATAACAAGGGTCCTCATTTTTTGTATTGATAACGTGTTTTACAGTATTTGTGAAAGTCAAATTGTCACTCTCTTTATACTGAATATCGCTAAATTCAAACAAAATGT-----------TTGTTTTCTTCTGTATTTAGGTGTTCTAATCTGAACT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

der_233

scaffold_4784:25196842-25196908 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.8	-24.6