ID:

der_23

 Coordinate:

scaffold_4929:11718928-11718991 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.4 -29.2 -28.8

Flybase annnotation

utr3 [utr3_minus_1364]; utr3 [utr3_minus_1363]

No Repeatable elements found

Sense Strand Reads

AGTAAGTGAAATAATTGAGTTCAAAGAAAAGTTGTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAATTGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACAATAATTAGTTCTATATTAATTGATCAAAA

***********************************((((((.((.(((...((((((((..(((((((.(((((...(((....)))..))))).)))))))))))))))...))).))))).)))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V040

embryo

 M055

female body

 M057

embryo

 V107

male body		 V108

head

 V060

head
..................................................TAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 0 1 9069.00 9069 7686 897 448 20 18 0
..................................................TAAGTAGTATCCATTAAAGGGTTT.......................................................................................... 24 1 1 393.00 393 385 6 2 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTCG.......................................................................................... 24 3 1 347.00 347 306 0 41 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTT........................................................................................... 23 0 1 210.00 210 166 15 26 1 2 0
..................................................TAAGTAGTATCCATTAAAGTGTTG.......................................................................................... 24 1 1 169.00 169 167 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTTG.......................................................................................... 24 1 1 119.00 119 116 2 0 0 1 0
...........................................................................................ACCGTTTAATGTACTACTTTAA................................................... 22 0 1 98.00 98 39 10 49 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTTG.......................................................................................... 24 1 1 93.00 93 75 17 1 0 0 0
...................................................AAGTAGTATCCATTAAAGGGTTG.......................................................................................... 23 0 1 85.00 85 4 81 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCTG.......................................................................................... 24 1 1 68.00 68 66 0 2 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGGTG.......................................................................................... 24 1 1 59.00 59 59 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGT............................................................................................ 22 0 1 50.00 50 26 4 19 1 0 0
..................................................TAAGGAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 39.00 39 38 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGGTTG.......................................................................................... 24 1 1 38.00 38 36 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCGTTG.......................................................................................... 24 1 1 35.00 35 35 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACGGGTTG.......................................................................................... 24 1 1 34.00 34 28 5 0 1 0 0
..................................................TAAGTAGTATCCATTAAAGTGTTT.......................................................................................... 24 2 1 33.00 33 33 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTC........................................................................................... 24 3 1 33.00 33 14 0 19 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTTT.......................................................................................... 24 2 1 30.00 30 30 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 28.00 28 28 0 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 28.00 28 9 0 19 0 0 0
..................................................TAAGTAGTATCCATTACAGGGTTG.......................................................................................... 24 1 1 27.00 27 27 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGTTG.......................................................................................... 24 1 1 26.00 26 24 2 0 0 0 0
..................................................TAAGTAGGATCCATTAAAGGGTTG.......................................................................................... 24 1 1 26.00 26 25 0 1 0 0 0
..................................................TAAGCAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 24.00 24 21 2 1 0 0 0
..................................................TAAGTAGTATCCATTAAAGAGTTG.......................................................................................... 24 1 1 23.00 23 22 1 0 0 0 0
.................................................TTAAGTAGTATCCATTAAAGGGTT........................................................................................... 24 0 1 23.00 23 19 1 3 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTGT......................................................................................... 25 0 1 22.00 22 8 9 5 0 0 0
....................................................AGTAGTATCCATTAAAGGGTTG.......................................................................................... 22 0 1 20.00 20 13 7 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGTTG.......................................................................................... 24 1 1 19.00 19 19 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTC.......................................................................................... 24 1 1 18.00 18 15 2 1 0 0 0
..................................................TAAGTAGTATCCCTTAAAGGGTTG.......................................................................................... 24 1 1 18.00 18 16 0 2 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTTT.......................................................................................... 24 2 1 17.00 17 17 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGATTG.......................................................................................... 24 1 1 17.00 17 17 0 0 0 0 0
...........................................................................................ACCGTTTAATGTACTACTTTA.................................................... 21 0 1 16.00 16 1 3 12 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCG.......................................................................................... 24 3 2 16.00 32 28 0 4 0 0 0
..................................................TAATTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 15.00 15 13 0 2 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTC........................................................................................... 23 3 1 15.00 15 9 0 6 0 0 0
..................................................TAAGTAGTATCCATTAAAGGCTTG.......................................................................................... 24 1 1 15.00 15 15 0 0 0 0 0
..................................................TAAGTAGCATCCATTAAAGGGTTG.......................................................................................... 24 1 1 14.00 14 14 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGATG.......................................................................................... 24 1 1 14.00 14 11 2 1 0 0 0
..................................................TAAGTAGTATCCATTAAAGGG............................................................................................. 21 0 1 14.00 14 8 1 5 0 0 0
..................................................TAAGTAGTGTCCATTAAAGGGTTG.......................................................................................... 24 1 1 12.00 12 11 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAGGGGTTG.......................................................................................... 24 1 1 12.00 12 11 0 1 0 0 0
..................................................TAAGTAGTATCCATTTAAGGGTTG.......................................................................................... 24 1 1 12.00 12 10 2 0 0 0 0
..................................................TAGGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 11.00 11 10 0 1 0 0 0
.................................................CTAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 25 1 1 11.00 11 8 3 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 11.00 11 7 1 2 0 0 1
..................................................CAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 11.00 11 10 1 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGGTTG.......................................................................................... 24 1 1 11.00 11 10 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAAGG.............................................................................................. 20 0 1 10.00 10 3 0 7 0 0 0
..................................................TAAGTAGTATCCATTAAATGTTTG.......................................................................................... 24 2 1 10.00 10 10 0 0 0 0 0
..................................................TAAGTAGTATCCACTAAAGGGTTG.......................................................................................... 24 1 1 10.00 10 10 0 0 0 0 0
..................................................TAACTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 10.00 10 9 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTA.......................................................................................... 24 1 1 9.00 9 9 0 0 0 0 0
..................................................TAAGTAATATCCATTAAAGGGTTG.......................................................................................... 24 1 1 9.00 9 8 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTGC......................................................................................... 25 1 1 9.00 9 4 0 5 0 0 0
..................................................TAAGTAGTATCTATTAAAGGGTTG.......................................................................................... 24 1 1 9.00 9 7 2 0 0 0 0
..................................................TAAGTACTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 9.00 9 8 1 0 0 0 0
..................................................TAAGTAGTATTCATTAAAGGGTTG.......................................................................................... 24 1 1 9.00 9 9 0 0 0 0 0
..................................................TAAGTGGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 9.00 9 8 1 0 0 0 0
..................................................TAAGTAGTATCCATTGAAGGGTTG.......................................................................................... 24 1 1 8.00 8 8 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCTT.......................................................................................... 24 2 1 8.00 8 8 0 0 0 0 0
..................................................GAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 8.00 8 8 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 8.00 8 8 0 0 0 0 0
..................................................TAAGTAGTACCCATTAAAGGGTTG.......................................................................................... 24 1 1 8.00 8 8 0 0 0 0 0
..................................................TACGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 7.00 7 5 0 2 0 0 0
..................................................TAAGTAGTCTCCATTAAAGGGTTG.......................................................................................... 24 1 1 7.00 7 4 3 0 0 0 0
..................................................TAAGTAGTATCAATTAAAGGGTTG.......................................................................................... 24 1 1 7.00 7 3 0 4 0 0 0
..................................................TAAGTAGTATCCATCAAAGGGTTG.......................................................................................... 24 1 1 6.00 6 6 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGTTT.......................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..................................................TATGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 6.00 6 6 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTGA......................................................................................... 25 1 1 6.00 6 4 1 1 0 0 0
..................................................TAATTAGTATCCATTAAAGGGTTT.......................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..................................................TAAGTAGTATCCATTAGAGGGTTG.......................................................................................... 24 1 1 6.00 6 5 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAGAG.............................................................................................. 20 2 1 6.00 6 4 0 2 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGGTT.......................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..................................................TAAGTAGTATCCGTTAAAGGGTTG.......................................................................................... 24 1 1 6.00 6 5 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAATTGTTG.......................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
...................................................AAGTAGTATCCATTAAGAGGTCG.......................................................................................... 23 3 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTGG.......................................................................................... 24 1 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTATTATCCATTAAATGGTTG.......................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACTGTTG.......................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTTGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 5.00 5 3 1 1 0 0 0
..................................................TAAGTATTATCCATTAAAGGGTTT.......................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGGGTTT.......................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGG............................................................................................. 21 2 1 5.00 5 2 0 3 0 0 0
..................................................TAAGTAGTATCCTTTAAAGGGTTG.......................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTCGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATGAAAGGGTTG.......................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGATTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCCTTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGGGTTG........................................................................................... 23 3 1 4.00 4 3 1 0 0 0 0
..................................................TTAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 4.00 4 0 1 3 0 0 0
..................................................TAAGTAGTATACATTAAAGTGTTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACAGGTCG.......................................................................................... 24 3 1 4.00 4 4 0 0 0 0 0
..................................................TAAGGAGGATCCATTAAAGGGTTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGAATCCATTAAAGGGTTG.......................................................................................... 24 1 1 4.00 4 2 0 2 0 0 0
..................................................TAAGTAGTATCCATTTAAGTGTTG.......................................................................................... 24 2 1 4.00 4 3 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGTTTT.......................................................................................... 24 3 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGCTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCAATAAAGGGTTG.......................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAATGGTTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTCTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGTTT.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGCTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGTTC.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCT........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGATTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGGATTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGGTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCGTTT.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGTTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGTGTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTCT.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCTTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
.......................................................AGTATCCATTAAAGGGTTG.......................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTACAGTGTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGT............................................................................................ 22 2 1 3.00 3 0 0 3 0 0 0
..................................................TAAGTAGTATCCATTAAAGGCTTT.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTT........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAAGTTG.......................................................................................... 24 2 1 3.00 3 2 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAATCGTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 25 0 1 3.00 3 2 1 0 0 0 0
...........................................................................................AGCGTTTAATGTACTACTTTAA................................................... 22 1 1 3.00 3 0 0 3 0 0 0
..................................................AAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 3.00 3 2 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGCTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACGCGTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTTTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTAG.......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGCGGTCG.......................................................................................... 24 3 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCAGTAAAGGGTTG.......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGTTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAATAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGGTTT.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGGGGTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGCAGTATCCATTAAAGGGTTC.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTCTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATAAAAGGGTTG.......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTACAGGGTTT.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGA............................................................................................... 19 2 3 2.33 7 3 0 4 0 0 0
...................................................AAGTAGTATCCATTAAAGGGTTT.......................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGTTTC.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGCAGTATCCATTAAAGGTTTA.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTACTATCCATTAAAGGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTTTTT.......................................................................................... 24 3 2 2.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGCCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTATTATCCATTAACGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAATAGGTCG.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCTATTAAATGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTGGGATCCATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTCTCCATTAACGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGGGGTT.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGCAGCATCCATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTTC.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCCTTCAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGATTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TCAGTAGTATCCATTACAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAATATCCATTAAAGGTTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAACTAGTATCCATTAAAGGGCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGGATCCTTTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTATGATCCATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCGTTTAATGTACTACTTT..................................................... 20 0 1 2.00 2 0 0 2 0 0 0
..................................................TAAGTCGGATCCATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCGTTTAATGTACTACTTTAAA.................................................. 23 1 1 2.00 2 1 0 1 0 0 0
............................................................................................CCGTTTAATGTACTACTTTAA................................................... 21 0 1 2.00 2 0 0 2 0 0 0
..................................................TACGTAGTATCCATTAACGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTTA.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAACTACTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................AGCGTTTAATGTACTACTTTA.................................................... 21 1 1 2.00 2 0 0 2 0 0 0
..................................................AAAGTAGTATCCCTTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGT............................................................................................ 23 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGAGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAACAAGTATCCATTAAAGGGGTG.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAACTAGTATCCATTAAATGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.................................................TGAAGTAGTATCCATTAAAGGGTT........................................................................................... 24 1 1 2.00 2 0 0 2 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTCG.......................................................................................... 25 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGTT........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGCACTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATAAATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TCAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCGATTAAAGGGTTG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
......................................................TAGTATCCATTAAAGGGTTG.......................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAATGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAA................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTTC.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAATTAGTATCCATTAAATGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGCGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATGCATTAAAGGGTTG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGT............................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGTTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCCG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGCAGTATCCATTAAAGGCTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAAGGGTGG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCTTTTAATGTACTACTTTAA................................................... 22 1 1 2.00 2 1 0 1 0 0 0
..................................................TAAGCAGTATCCATTAAAGGGCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACCGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATGAAAGGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATTCATTAAAGGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCCTTAAAGGGTTT.......................................................................................... 24 2 1 2.00 2 1 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAACTGTTC.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTGTCCATTAAAGGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGGAGTATCCATGAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCTTTA.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGATG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCGGTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTTG......................................................................................... 25 2 1 2.00 2 0 1 1 0 0 0
..................................................TAAGTAGTATCCATTAAAGCGT............................................................................................ 22 1 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGTATCCCTTAAAGTGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATTGATG.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGGATCCATTTAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTCTCCATTAAAGTGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAAGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCTATTAAAGGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTC........................................................................................... 23 1 1 2.00 2 0 0 2 0 0 0
..................................................TAACTAGTATCCATTAAAGGGCTC.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGGCTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGCTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTATAGGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................GAAGTAGTATCCATTATAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGCAGTATCCATTAAAGTGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTCTCCATTCAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGATT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAG............................................................................................... 19 0 1 2.00 2 0 1 1 0 0 0
..................................................TAAGTAGTATCCATTCACGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATTGTTT.......................................................................................... 24 3 2 1.50 3 3 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGTGTTT.......................................................................................... 24 3 2 1.50 3 3 0 0 0 0 0
...................................................AAGTAGTATCCATTAAAGGGTTC.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TAACTAGTATCCATTAAAGGCTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTGGGATCCAGTAAAGGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCTCTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TACGTAGTATCCATTATAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTTAAGGGGTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAAATGGTTG.......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................TAAGAAGGATCCATTAAAGGCTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTACAGTGTT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................CAAGAAGTATCCATTAAAGGATTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TGAGTAGCATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................TAAGAAGTATCCATTCAAGGCTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAGGGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCTGTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAATATCCATTTAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGAAGTATCCATTAAACGGTTT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGCATCCACTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGTTTT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAACAGTATCCATTAAAGGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTG........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCGTTAAAGGGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................CAAGTAGTATCCATTAAAGGGTTT.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TATGTAGTATCCATTAAAGGGCTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTAGAGGGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAATGGGTTG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TCAGTCGTATCCATTAAAGTGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTTAAGGGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAATGTTT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGGCCCATTAAAGGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTGGTATCCATTACAGGGATG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................CAAGAAGTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTGTTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATACTTTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGCAGTATCCATTAAAGTGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGCATACATTTAAGGGTTG.......................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTATTATCCATTAAATGGATG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACCGTTTAATGCACTACTTTAA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAATAGCATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGCAGTATCCATTAAAAGGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGACTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAACGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGCGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TCAGTCGTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAGGTGGTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................ATAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCGCTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TACGTAGTATCCATTAAAGGTTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATAGTTT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACCGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GAAGTAGTATCCATTAAAGAGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGTTC.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCGATGAAAGGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAATGTGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAACATCCATTAAAGGGCTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TACGTAGTATCCATTAAAGCGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTACTATCCATTAAAGGTTTC.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAAGGAGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTTAGGGGTT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TGAGTGGTATACATTAAAGGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAATTAGTATCCATTAAAGTATTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTCTCCATTAAATTGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TCAGTAGTATCCATTAAATGTTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TGAGTAGTATCCCTTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................TAAGTAGTATCCACTAAAGGGGTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAATTAGTATCCATTAAAGTGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACCGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGCAGTATACATTAAACGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................CAAGTAGTATCCATTAAAGGTTTT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCCAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCAGTAAAGGGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAAGGGGTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0

Anti-sense strand reads

TCATTCACTTTATTAACTCAAGTTTCTTTTCAACAACTACCTTCGAAGGAATTCATCATAGGTAATTTCCCAACACCAGTGTTAACTTAGCTGGCAAATTACATGATGAAATTCTTAGAGGTCAGTTTCAGTTGTTATTAATCAAGATATAATTAACTAGTTTT

************************************((((((.((.(((...((((((((..(((((((.(((((...(((....)))..))))).)))))))))))))))...))).))))).)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4929:11718878-11719041 + der_23 confident AGTAAGTGAAATAATTGAGTTC------AAAGAAAAGTT-------G--TT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACAA-TAATTAGTTCTATAT------------------------T--------------------------------------------------------------A-A-TTGATCAAAA
droYak3 2L:10160009-10160192 - dya_16 confident AGTAAGTGAAATAGTTGAGTTC------AAGGAAAAGTG-------T--TT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCAACAT-TAATTAGTTATTTAT------------------------TGAAGAGCATTATGCTTCGA------------------------------AGT--------------TTTAAAAAAA
droSec2 scaffold_3:14537-14739 - dse_5 confident AGTAAGTGAAATAATTGAGTTC------AAAGAAAAAATT------G--TT--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACAT-TAAATAGTGATATAT------------------------GTCAGAGTATTG-------------TCGGAATAAATATAATAATAATCGGAAA--------------TATTTAGAAA
droSim2 2l:13334240-13334442 - dsi-mir-968 Known_mirbase AGTAAGTGAAATAATTGAGTTC------AAAGAAAAAATT------G--TT--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACAT-TAAATAGTGATATAT------------------------GTCAGAGTATTG-------------TCGGAATAAATATAATAATAATCGGAAA--------------TATTTAGAAA
dm3 chr2L:13747692-13747874 - dme-mir-968 Known_mirbase AGTAAGTGAAACCAATGAGTTC------AAAGAAAAATT-------G--TT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCAACACATAAGTAGTGATA-AT------------------------GCAAGAGTATTGTA--TCGG------------------------------AAT--------------TAATTAGAAA
droEug1 scf7180000409452:319705-319871 - AGTTCTCGAAGTTAACGAGATC------GAGTAATGCT------TCATAA--ATATTGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAG------ATAATCAACCTTTTGATGTACTACTTTAAGAAGCTGTAGTCGAATTCAACAT-TAT-TATATACA------------------------------------------------------------------------AAT--------------TAA-TTTTACAAAAA
droBia1 scf7180000302408:2583395-2583588 + AGTCAGTGAAT----CGTGTCCCACATCCA-----AAATTAAGTGCAAAT--TTCTTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTCATTATAAT------AAAATCAACCGTTTGATGTACTACTTTAAGAAACTGCAGTCCATTTCTTCAT-TTTAAAGTAATA----------------------------GAA---CA-----------A----TTTCA------------ATATTTTAAAA-----TATTTAG-AATTTAGAAAA
droTak1 scf7180000414072:20159-20344 + AGTGAGTCAAGTAATCCAGTTC------GCATAATAGTTTGAGTCCAAAT--TTATTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTTATTATAAT------AAAACCAACCGTTTGATGTACTACTTCAAGAAACTCCAGTCCTCTTTTACAT-TTATTAGTAAAT-----------------------------TGGAAAATTGTT--TTTG------------------------------AAA--------------TTTCAAAAAA
droEle1 scf7180000491338:1357093-1357272 - AGTTAGTGAAGTGATTGAGTGC------AAAGAATAGTTTA---CCATTA--GAACTGCAGCTTCCTTAAGTAGTAACCATTAAAGGGTTGTCAAAATAAT------TGAACCAACCATTTAATGTACTACTTTAAGAAACTCCAGACCATGCCAGTGT-TTAAAA-TACAA----------------------------T-AAAAGATTATGTTTT---------------------------------------------G---TTTAAAAAAA
droRho1 scf7180000780107:332456-332640 + ATTGAGTGCAGTGATCGAGTCC------AAGGAATAGTTACAGTGAATAA--ATTCTGCAGCTTCTTTAAGTAGTAACCATTAAAGGGTTGTTATAAAAAT------TGAGCCAACCATTTAATGTACTACTTTAATAATCTCCAGACAATGTCGCCGT-TTAA-AGTAGAT---TAATAAC---------------------TAAAATTC--------------------------------------------------TGTT-ATAAAAAAAA
droFic1 scf7180000448796:148-334 + AGTACGTGAAGAAAACAAGTCA------AATTAAGAACTTTACTCAACAA--ATACTGCAGATTCCTTAAGTAGTAACCATTAAAGGGTTGTTAATCAGAT------AAATCCAACCTTATGGTATACTACTTTAAGAAACTCTAGTTATACAGAACAC-TAT-AA-TAAA----------------------------AGAAAAGTGTTATATTTTTA------------------------------ACA--------------TATTAAAAAA
droKik1 scf7180000302236:231966-232171 + TGTGAGTGACATAGTGAAGTCC------AAGTGCTAATC-------T--TCGGTATTGCAGTCTCTCTAAGTAGTATCCATTAAAGAGTCGTGATTATATT------CAAATCGACCTTGTGGTTTACTACCTTAAGAAACTTCAGTTTATTCCGGCTT-TCAT-ATAGAAT---CACTATCTTGAATTCCTGACCTAAAATAAGGA--------------------------------C------------ATACATATCTGTTAATTAAGAAAA
droAna3 scaffold_12943:1815489-1815643 - dan_28 confident A------------------------------------------------------TGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATT------CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTA-AAATAAGTTTC-----------AAGCATTTCAAGCCA------AAGT-----------------------------TTTC------------ATAAATATCTG-T-GCAAACTAAA
droBip1 scf7180000396728:1424163-1424358 + AGCAGTTATAGTATTCACTTTT------GGAGGAAAGTTTGAACCCCAGG--TGATGGCAGTTTCTTTAAGTAGTATCCATTAAAGGGTCGTTAACATATTT-----AAAATTGACCATTTAATGTACTACTTTGAGTAACTCCATATAAAGTCGTCCA-AGT-TGAAAATATCTTC----------------------CAAACAATATTATCTTCTTA------------------------------ATA------------T-ACAACTTAAA
dp5 4_group1:1722746-1722932 + dps-mir-968 Known_mirbase ACTCAGTAAAGTGATCGAGTTT------GAATAGTGATTTAGTTCTACAA--TTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAG-AAC-TG----------------------------------------------------------TGCGATTAGAGTTATCAATAGGC--------------AGG-TCCTCTCAAAA
droPer2 scaffold_5:3483561-3483746 - dpe_27 confident AGTCAGTAAAGTGATCGAGTTT------GAATAGTGATTTAGTTCCACAA--TTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCAACAG-AAC-TG----------------------------------------------------------TGCGATTAGAGTTATCAATAGGC--------------AGG-TCCTCTCAAAA
droWil2 scf2_1100000004585:545313-545460 + dwi_11 confident A-----------------------------------------------------------GATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCAACAA-ATATA-----GA----------AAGTATT----------GAAAAAGT-----------------------------GTTCATTT-------------GATCTGG-TCATTGAAAAA
droVir3 scaffold_12723:5043973-5044117 - dvi-mir-968 Known_mirbase ----------------------------------------------------------------CCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAGCAAATCAGCAA-ATCGA-----TA----------------------------AGA---CA-----------AACTAAAAAATTTAAATCATTGCTAAG-----------GCT-TGCT-GCAATGAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AGTAAGTGAAATAATTGAGTTC------AAAGAAAAGTT-------G--TT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACAA-TAATTAGTTCTATAT------------------------T--------------------------------------------------------------A-A-TTGATCAAAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................TAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................2419069.0090698974480768620180
...................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................241393.00393620385000
...................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................231210.0021015260166120
..................................................................................................................ACCGTTTAATGTACTACTTTAA............................................................................................................................................22198.00981049039000
....................................................................AAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................23185.008581004000
...................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................22150.0050419026100
..................................................................TTAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................24123.002313019000
...................................................................TAAGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................25122.00229508000
.....................................................................AGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................22120.002070013000
...................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................24118.001821015000
..................................................................................................................ACCGTTTAATGTACTACTTTA.............................................................................................................................................21116.001631201000
...................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................21114.00141508000
...................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................20110.00100703000
...................................................................TAAGTAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................2419.0090009000
...................................................................TAAGTAGTATCCATTAAAGGGTTGC........................................................................................................................................................................................2519.0090504000
...................................................................TAAGTAGTATCCATTAAAGGGTTGA........................................................................................................................................................................................2516.0061104000
...................................................................TAAGTAGTATCCATTAAAGGGTCT.........................................................................................................................................................................................2413.0030003000
........................................................................AGTATCCATTAAAGGGTTG.........................................................................................................................................................................................1913.0030003000
..................................................................TTAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................2513.0031002000
...................................................................TAAGTAGTATCCATTAAGA..............................................................................................................................................................................................1932.3370403000
....................................................................AAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................2312.0022000000
..................................................................................................................ACCGTTTAATGTACTACTTT..............................................................................................................................................2012.0020200000
..................................................................................................................ACCGTTTAATGTACTACTTTAAA...........................................................................................................................................2312.0020101000
...................................................................................................................CCGTTTAATGTACTACTTTAA............................................................................................................................................2112.0020200000
.......................................................................TAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................2012.0022000000
...................................................................TAAGTAGTATCCATTAAA...............................................................................................................................................................................................1812.0020002000
...................................................................TAAGTAGTATCCATTAAAGGGTTTG........................................................................................................................................................................................2512.0021100000
...................................................................TAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................2312.0020200000
...................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................1912.0021100000
....................................................................AAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................2311.0011000000
droYak3
AGTAAGTGAAATAGTTGAGTTC------AAGGAAAAGTG-------T--TT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCAACAT-TAATTAGTTATTTAT------------------------TGAAGAGCATTATGCTTCGA------------------------------AGT--------------TTTAAAAAAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................TAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................24120896.0020896234563715169144000000
..................................................................................................................ACCTTTTGATTTACTACTTTAG............................................................................................................................................221822.0082201796250000000
...................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................231416.00416011922201200000
...................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................221173.0017300138350000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................251116.001160196190000000
..................................................................................................................ACCTTTTGATTTACTACTTTAGT...........................................................................................................................................231102.001020088140000000
...................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................24175.0075008651100000
...................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................20144.0044004130000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGC........................................................................................................................................................................................25144.0044004040000000
...................................................................TAAGTAGTATCCATTAAAGGGC...........................................................................................................................................................................................22140.0040004000000000
..................................................................................................................ACCTTTTGATTTACTACTTTAGC...........................................................................................................................................23128.0028002800000000
...................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................21128.0028002260000000
..................................................................................................................ACCTTTTGATTTACTACTTTAGA...........................................................................................................................................23120.0020002000000000
....................................................................AAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................23120.0020034130000000
..................................................................TTAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................24120.0020001370000000
..................................................................................................................ACCTTTTGATTTACTACTTTA.............................................................................................................................................21117.0017011600000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGA........................................................................................................................................................................................25117.0017001070000000
........................................................................................................................................GAATCTCCAGTCAAAGTCAAC.......................................................................................................................21117.0017001610000000
...................................................................TAAGTAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................24116.0016002140000000
...................................................................TAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................23115.0015001500000000
...................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................24115.001500590100000
..................................................................................................................ACCTTTTGATTTACTACTTTAC............................................................................................................................................22113.0013001300000000
.......................................................................TAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................20110.0010001000000000
..................................................................................................................ACCTTTTGATTTACTACTT...............................................................................................................................................1915.00500500000000
....................................................................................................................CTTTTGATTTACTACTTTAG............................................................................................................................................2014.00400310000000
.....................................................................................................................TTTTGATTTACTACTTTAG............................................................................................................................................1914.00400400000000
..................................................................TTAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................2513.00300030000000
.....................................................................AGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................2213.00300210000000
...................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................1913.00300200100000
........................................................................AGTATCCATTAAAGGGTTG.........................................................................................................................................................................................1913.00300210000000
..................................................................TTAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................2413.00300300000000
...................................................................TAAGTAGTATCCATTAAAGTTG...........................................................................................................................................................................................2213.00300300000000
...................................................................TAAGTAGTATCCATTAAAGGGTTTG........................................................................................................................................................................................2513.00300300000000
........................................................................................................................................GAATCTCCAGTCAAAGTCAACA......................................................................................................................2212.00200200000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGTT.......................................................................................................................................................................................2612.00200200000000
...................................................................TAAGTAGTATCCATTAAAGGGTG..........................................................................................................................................................................................2312.00200110000000
.....................................................................AGTAGTATCCATTAAAGG.............................................................................................................................................................................................1812.00200200000000
...................................................................TAAGTAGTATCCATTAAAGGGTAA.........................................................................................................................................................................................2411.00100010000000
...................................................................TAAGTAGTATCCATTAAAGGGTGT.........................................................................................................................................................................................2411.00100010000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGTGGT.....................................................................................................................................................................................2811.00100100000000
droSec2
AGTAAGTGAAATAATTGAGTTC------AAAGAAAAAATT------G--TT--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACAT-TAAATAGTGATATAT------------------------GTCAGAGTATTG-------------TCGGAATAAATATAATAATAATCGGAAA--------------TATTTAGAAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................TAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................241129769.001297691346129123506
...................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................2312934.00293432291415
..................................................................TTAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................241683.00683106793
...................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................221430.00430014263
...................................................................TAAGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................251409.00409104062
...................................................................TAAGTAGTATCCATTAAAGGGTTGA........................................................................................................................................................................................251351.00351003510
...................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................201138.00138001380
....................................................................AAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................231125.001251101131
...................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................211116.00116001160
..................................................................................................................ACCGTTTGATGTACTACTTTAG............................................................................................................................................221108.00108101070
...................................................................TAAGTAGTATCCATTAAAGGGTTGC........................................................................................................................................................................................25198.009800980
.....................................................................AGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................22185.008500850
...................................................................TAAGTAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................24173.007310711
...................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................24145.004510440
...................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................24142.004200420
.......................................................................TAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................20135.003510340
...................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................19131.003100310
...................................................................TAAGTAGTATCCATTAAAGGGTTTG........................................................................................................................................................................................25130.003000300
..................................................................TTAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................23118.001800180
..................................................................TTAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................25118.001800180
..................................................................................................................ACCGTTTGATGTACTACTTTA.............................................................................................................................................21111.001110100
...................................................................TAAGTAGTATCCATTAAAGGGTTGTA.......................................................................................................................................................................................26110.00100190
......................................................................GTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................2119.0091080
.....................................................................AGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................2118.0080080
...................................................................TAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................2317.0070070
...................................................................................................................CCGTTTGATGTACTACTTTAGG...........................................................................................................................................2217.0070070
...................................................................TAAGTAGTATCCATTAAA...............................................................................................................................................................................................1817.0070070
...........................................................................................TTCTCAACATG-----CAAATCA..................................................................................................................................................................1815.0050050
.........................................................................GTATCCATTAAAGGGTTG.........................................................................................................................................................................................1814.0040040
...................................................................TAAGTAGTATCCATTAAAGGGTTGG........................................................................................................................................................................................2514.0040040
..................................................................................................................ACCGTTTGATGTACTACTTTAGT...........................................................................................................................................2313.0030030
...................................................................TAAGTAGTATCCATTAAAGGGTTGAA.......................................................................................................................................................................................2613.0030030
.....................................................................AGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................2313.0030030
..................................................................................................................ACCGTTTGATGTACTACTTAG.............................................................................................................................................2112.0020020
...................................................................TAAGTAGTATCCATTAAAGGGTTGTT.......................................................................................................................................................................................2612.0020020
..................................................................TTAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................2512.0020020
..................................................................................................................ACCGTTTGATGTACTACTTTAGC...........................................................................................................................................2312.0020020
................................................................................................................CAACCGTTTGATGTACTACTTT..............................................................................................................................................2212.0020020
........................................................................AGTATCCATTAAAGGGTTG.........................................................................................................................................................................................1912.0020020
.....................................................................AGTAGTATCCATTAAAGGGTTGTT.......................................................................................................................................................................................2412.0020020
.....................................................................AGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................2012.0021010
....................................................................AAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................2212.0020020
...................................................................TAAGTAGTATCCATTAAAGGGTTGACT......................................................................................................................................................................................2711.0010010
.......................................................................TAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................2011.0010010
...................................................................TAAGTAGTATCCATTAAAGGGTTGAC.......................................................................................................................................................................................2611.0010010
..............................AGAAAAAATT------G--TT--CATGGAAGCT.....................................................................................................................................................................................................................2311.0010010
...................................................................TAAGTAGTATCCATTAAAGGGTTTGC.......................................................................................................................................................................................2611.0010010
droSim2
AGTAAGTGAAATAATTGAGTTC------AAAGAAAAAATT------G--TT--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACAT-TAAATAGTGATATAT------------------------GTCAGAGTATTG-------------TCGGAATAAATATAATAATAATCGGAAA--------------TATTTAGAAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................TAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................24148314.00483142819224941610220233521222503900000
..................................................................................................................ACCGTTTGATGTACTACTTTAG............................................................................................................................................2211621.0016211213092000000030700000
...................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................231600.0060000332050096054500000
...................................................................................................................CCGTTTGATGTACTACTTTAGG...........................................................................................................................................221172.001720016700000000500000
...................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................241161.001610051000000015500000
...................................................................TAAGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................251119.0011900661000011703400000
...................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................221113.001130046102007605100000
..................................................................TTAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................24186.0086001000000108400000
...................................................................TAAGTAGTATCCATTAAAGGGTTGA........................................................................................................................................................................................25174.007400510000221303300000
................................................................................................................CAACCGTTTGATGTACTACTTT..............................................................................................................................................22174.0074007300000000100000
..................................................................................................................ACCGTTTGATGTACTACTTTA.............................................................................................................................................21157.00571046000000001000000
...................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................20154.00540022007003401800000
....................................................................AAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................23148.00480014900000002500000
..................................................................................................................ACCGTTTGATGTACTACTTTAGA...........................................................................................................................................23143.00430031000000001200000
...................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................19131.00310011001200030500000
...................................................................TAAGTAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................24130.00300013000001001600000
...................................................................TAAGTAGTATCCATTAAAGGGTTGC........................................................................................................................................................................................25125.0025006000000001900000
...................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................21123.002300500700210800000
...................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................24120.0020004000000001600000
.....................................................................AGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................22120.0020001310000000600000
...................................................................................................................CCGTTTGATGTACTACTTTAG............................................................................................................................................21119.0019001600000000300000
.................................................................................................................AACCGTTTGATGTACTACTTTAG............................................................................................................................................23119.0019001600000000300000
..................................................................................................................ACCGTTTGATGTACTACTTTAGC...........................................................................................................................................23118.0018001700000000100000
...................................................................TAAGTAGTATCCATTAAA...............................................................................................................................................................................................18117.0017002001300100100000
................................................................................................................CAACCGTTTGATGTACTACTTTAG............................................................................................................................................24111.0011001100000000000000
...................................................................................................................CCGTTTGATGTACTACTTTAGT...........................................................................................................................................2219.00900700000000200000
...................................................................TAAGTAGTATCCATTAAAGGGTTGG........................................................................................................................................................................................2517.00700600000000100000
...................................................................................................................CCGTTTGATGTACTACTTTAGA...........................................................................................................................................2217.00700700000000000000
.......................................................................TAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................2017.00700500000000200000
..................................................................TTAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................2316.00600200000000400000
..................................................................................................................ACCGTTTGATGTACTACTTTAT............................................................................................................................................2216.00600100000000500000
........................................................................AGTATCCATTAAAGGGTTG.........................................................................................................................................................................................1915.00500200000000300000
...................................................................................................................CCGTTTGATGTACTACTTTAGGT..........................................................................................................................................2315.00500300000000200000
..................................................................................................................ACCGTTTGATGTACTACTTTAA............................................................................................................................................2214.00400200000200000000
...................................................................TAAGTAGTATCCATTAAAGGGG...........................................................................................................................................................................................2214.00400300000000100000
..................................................................................................................ACCGTTTGATGTACTACTTT..............................................................................................................................................2014.00400300000000100000
..................................................................................................................ACCGTTTGATGTACTACTTTAC............................................................................................................................................2214.00400400000000000000
.........................................................................GTATCCATTAAAGGGTTG.........................................................................................................................................................................................1814.00400300000000100000
...................................................................................................................CCGTTTGATGTACTACTT...............................................................................................................................................1813.00300300000000000000
.....................................................................................................................GTTTGATGTACTACTTTAG............................................................................................................................................1913.00300300000000000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGTA.......................................................................................................................................................................................2613.00300000000000300000
...................................................................TAAGTAGTATCCATTAAAGGGTCT.........................................................................................................................................................................................2413.00300000000000300000
...................................................................................................................CCGTTTGATGTACTACTTTAGC...........................................................................................................................................2213.00300300000000000000
.............................................................................................................AATCAACCGTTTGATGTACTACT................................................................................................................................................2312.00200200000000000000
...................................................................TAAGTAGTATCCATTAAAGGGGCT.........................................................................................................................................................................................2412.00200000000000200000
..................................................................................................................ACCGTTTGATGTACTACTTTAGG...........................................................................................................................................2312.00200200000000000000
..................................................................TTAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................2512.00200100000000100000
...................................................................................................................CCGTTTGATGTACTACTTTAGGC..........................................................................................................................................2312.00200200000000000000
...................................................................TAAGTAGTATCCATTAAAGGGTG..........................................................................................................................................................................................2312.00200100000000100000
dm3
AGTAAGTGAAACCAATGAGTTC------AAAGAAAAATT-------G--TT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCAACACATAAGTAGTGATA-AT------------------------GCAAGAGTATTGTA--TCGG------------------------------AAT--------------TAATTAGAAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................TAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................241209122.0020912200000001522800000000000000061000000012120031002051100011120001000000000000000000000000055363523350002040052054210000060000247105027013010025030100000001000554644408833632416041411977320000000000029080081607010100003050002000002610000023003100100138213031505208030003200001664679564040301212656920001441105124121047153426483021401021274011011220159292471401088526443925009011714110325101013457314416123141882930021000
...................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................2314655.0046550000000000000000000000000010000210000000101030000000000000000000000000000000000003114000000000000000000000000005000000000000000000000000000191892392410000001010000000000010100020001002000000000000020000000000000000001010300001112600100000217102110010010531000001500001000031510723000000037000103351179359910310000102000211200000422000160121970000200
..................................................................................................................ACCTTTTGATGTACTACTTTAA............................................................................................................................................2212239.002239000010122225000000000000000000000000100000000000000000000030000000000000000000000011744069476790020100010005110300000000016880054000000000000000000000000500260000000000000000000000010000000000000000000000000000000000000000000000000000000400100100001890000000000000000200000000000000000000000000000000565000000000000000000000000100000000000000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................2511719.00171900000000100000000000000000000000001000000000000000000000000000000000000000000000012241000000000100000000000000003500000000000000000000000000784280100000000000000000000010000000000000000000000000000014000000000000000001000000010760040000201116100000000400000010000100000400201500000001000000010190100501000000000000000000000600000104440000000
...................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................2211047.001047000000001000000000000000000000000060000000001000100000000000000000000000000000000001000000000000000000000000000200000000000000000000000000012343012000010000000000000000100000000020000000000000000000000000000000000000001000001033008000069510000000015000000100000000006001640000000000000000098667000000000000000010110001300000206730001010
...................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................241676.0067600000000010000000000000000000000000000000000000000001000000000000000000000000000022000000000000000000000000000000000000000000000000000000003329100000010000000000000000000000000000000000020000000000000000000000000100000000001002000000020175000000000910000010000000000100273000000000000000007322700100000000000000000000300000002210000000
.....................................................................AGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................221541.0054100000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000002000000000000000000000000000012010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000533100000000020000001000000000000021000000000000000001842100100000000000000000000000000000010000000
..................................................................TTAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................241472.00472000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007600000000010000000000000000000000000000000000000005439410000000000000000000000000000000200000000
..................................................................................................................ACCTTTTGATGTACTACTTTA.............................................................................................................................................211436.00436000000004300000000000000000000000020000000000000000000000010000000000000000000000251150143400000000200010030000020003511080000000000000000000000002030100000000000000000000000000000000000000000000000000000000000000000000000000000010020000000530000000000000000000000000000000000000000000000000131100000000000000000000000000000000000000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGA........................................................................................................................................................................................251372.003720000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000027003000000000000000000000000000000000000000000000000000000000000000000000001000001011000000029130000000108000000000000000011006600000011000000000926700200000001000000000000600000000020000000
...................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................201307.00307000000000000000000000000000000000061000000000000000000000000000000000000000000000000610000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000001000000000000000000000422510000000000000000000000100000000000000000
...................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................211292.00292000000000100000000000000000000000057000000000000000000000000000000000000000000000020420000000000001000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000010100040000770000000002000000000000000000000100000000000000000719200000000000000000000000000000000010000000
....................................................................AAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................231266.00266000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001160000000000000000000000100000010000000000000000000000000000000000000000000000000000000000006400000000010000001000000000000031000000000000000004419400000000000000000000000000000000100000000
...................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................241198.0019800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000171200000000000000000000000000000010000000000000000014011900000000000000000000000000000000100000000
...................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................191162.0016200000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000370000000000000000000000000000000000000000000000000214400000000000000000000000000000000000000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGC........................................................................................................................................................................................251151.00151000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021108100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000169001000000000000010000000000000100100000000000000019800000000000000000000000000000000000000000
...................................................................TAAGTAGTATCCATTAAA...............................................................................................................................................................................................181127.0012700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000001000000000000000000012300000000000000000000000000000000000000000
...................................................................TAAGTAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................24197.0097000000001100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001230000000002100000000000000001000000000000000000000145500000000000000000000000100010000000000000
.......................................................................TAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................20151.005100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124000000000000000000000000000000000000000000000000042800000000000000000000000000000000000000000
..................................................................................................................ACCTTTTGATGTACTACTTTAAA...........................................................................................................................................23147.00470000000000000000000000000000000000000000000000000000000000000000000000000000000003230400000000010000010000000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CCTTTTGATGTACTACTTTAA............................................................................................................................................21130.00300000001001000000000000000000000000000000000000000000000000000000000000000000000002031300000000000000000000000000810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................AACCTTTTGATGTACTACTTTAA............................................................................................................................................23125.00250000000001000000000000000000000000000000000000000000000000000000000000000000000003041000000000000000000000000000330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGTT.......................................................................................................................................................................................26125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000010000000000000100000000000000000031200000000000000000000000100000000000000000
......................................................................GTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................21124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000011900000000000000000000000000000000000000000
..................................................................TTAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................25121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
.....................................................................AGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................21120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
........................................................................AGTATCCATTAAAGGGTTG.........................................................................................................................................................................................19116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004300000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000
...................................................................TAAGTAGTATCCATTAAAGGGTCT.........................................................................................................................................................................................24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000031000000000000000000000000000000000000000000
...................................................................TAAGTAGTATCCATTAAAGGGTTGTA.......................................................................................................................................................................................26115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020400100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001600000000000000000000000000000000000000000
.........................................................................GTATCCATTAAAGGGTTG.........................................................................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000
...................................................................TAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................23111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
.................................................................................................................AACCTTTTGATGTACTACTTTA.............................................................................................................................................22110.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................ACCTTTTGATGTACTACTTTAAC...........................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001600000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TTAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002800000000000000000000000000000000000000000
....................................................................................................................CTTTTGATGTACTACTTTAA............................................................................................................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000050200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droEug1
AGTTCTCGAAGTTAACGAGATC------GAGTAATGCT------TCATAA--ATATTGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAG------ATAATCAACCTTTTGATGTACTACTTTAAGAAGCTGTAGTCGAATTCAACAT-TAT-TATATACA------------------------------------------------------------------------AAT--------------TAA-TTTTACAAAAASizeHit CountTotal NormTotal
No Reads
droBia1
AGTCAGTGAAT----CGTGTCCCACATCCA-----AAATTAAGTGCAAAT--TTCTTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTCATTATAAT------AAAATCAACCGTTTGATGTACTACTTTAAGAAACTGCAGTCCATTTCTTCAT-TTTAAAGTAATA----------------------------GAA---CA-----------A----TTTCA------------ATATTTTAAAA-----TATTTAG-AATTTAGAAAASizeHit CountTotal NormTotal
No Reads
droTak1
AGTGAGTCAAGTAATCCAGTTC------GCATAATAGTTTGAGTCCAAAT--TTATTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTTATTATAAT------AAAACCAACCGTTTGATGTACTACTTCAAGAAACTCCAGTCCTCTTTTACAT-TTATTAGTAAAT-----------------------------TGGAAAATTGTT--TTTG------------------------------AAA--------------TTTCAAAAAASizeHit CountTotal NormTotal
No Reads
droEle1
AGTTAGTGAAGTGATTGAGTGC------AAAGAATAGTTTA---CCATTA--GAACTGCAGCTTCCTTAAGTAGTAACCATTAAAGGGTTGTCAAAATAAT------TGAACCAACCATTTAATGTACTACTTTAAGAAACTCCAGACCATGCCAGTGT-TTAAAA-TACAA----------------------------T-AAAAGATTATGTTTT---------------------------------------------G---TTTAAAAAAASizeHit CountTotal NormTotal
No Reads
droRho1
ATTGAGTGCAGTGATCGAGTCC------AAGGAATAGTTACAGTGAATAA--ATTCTGCAGCTTCTTTAAGTAGTAACCATTAAAGGGTTGTTATAAAAAT------TGAGCCAACCATTTAATGTACTACTTTAATAATCTCCAGACAATGTCGCCGT-TTAA-AGTAGAT---TAATAAC---------------------TAAAATTC--------------------------------------------------TGTT-ATAAAAAAAASizeHit CountTotal NormTotal
No Reads
droFic1
AGTACGTGAAGAAAACAAGTCA------AATTAAGAACTTTACTCAACAA--ATACTGCAGATTCCTTAAGTAGTAACCATTAAAGGGTTGTTAATCAGAT------AAATCCAACCTTATGGTATACTACTTTAAGAAACTCTAGTTATACAGAACAC-TAT-AA-TAAA----------------------------AGAAAAGTGTTATATTTTTA------------------------------ACA--------------TATTAAAAAASizeHit CountTotal NormTotal
No Reads
droKik1
TGTGAGTGACATAGTGAAGTCC------AAGTGCTAATC-------T--TCGGTATTGCAGTCTCTCTAAGTAGTATCCATTAAAGAGTCGTGATTATATT------CAAATCGACCTTGTGGTTTACTACCTTAAGAAACTTCAGTTTATTCCGGCTT-TCAT-ATAGAAT---CACTATCTTGAATTCCTGACCTAAAATAAGGA--------------------------------C------------ATACATATCTGTTAATTAAGAAAASizeHit CountTotal NormTotal
No Reads
droAna3
A------------------------------------------------------TGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATT------CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTA-AAATAAGTTTC-----------AAGCATTTCAAGCCA------AAGT-----------------------------TTTC------------ATAAATATCTG-T-GCAAACTAAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................................................................TAAGTAGTATCCATTAAAGGGTCG.........................................................................................................................................................................................2412167.00216734691629111441
...................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................201243.00243023310000
...................................................................TAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................231201.00201015942000
..................................................................................................................ACCGTTTGATGTACTACTTTAG............................................................................................................................................22161.00610538000
...................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................22150.00500409001
...................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................19149.00490409000
...................................................................TAAGTAGTATCCATTAAAGGGTCT.........................................................................................................................................................................................24134.00340133000
..................................................................TTAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................24127.00270261000
...................................................................TAAGTAGTATCCATTAAAGGGTCC.........................................................................................................................................................................................24124.00240519000
...................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................21121.00210201000
...................................................................................................................CCGTTTGATGTACTACTTTAGG...........................................................................................................................................2219.009063000
...................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................2419.009007002
...................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................2318.008116000
...................................................................TAAGTAGTATCCATTAAAGGGTCGC........................................................................................................................................................................................2517.007043000
...................................................................TAAGTAGTATCCATTAAAGGGTCGT........................................................................................................................................................................................2516.006042000
.....................................................................AGTAGTATCCATTAAAGGGTCG.........................................................................................................................................................................................2216.006024000
..................................................................TTAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................2316.006051000
..................................................................TTAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................2115.005050000
..................................................................................................................ACCGTTTGATGTACTACTTTA.............................................................................................................................................2114.004040000
...................................................................TAAGTAGTATCCATTAAA...............................................................................................................................................................................................1814.004013000
....................................................................AAGTAGTATCCATTAAAGGGTCG.........................................................................................................................................................................................2314.004022000
...................................................................TAAGTAGTATCCATTAAAGGGC...........................................................................................................................................................................................2213.003030000
..................................................................................................................ACCGTTTGATGTACTACC................................................................................................................................................1812.002020000
...................................................................TAAGTAGTATCCATTAAAGGGTCA.........................................................................................................................................................................................2412.002002000
...................................................................TAAGTAGTATCCATTAAAC..............................................................................................................................................................................................1912.002020000
....................................................................AAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................2212.002020000
....................................................................AAGTAGTATCCATTAAAGGG............................................................................................................................................................................................2012.002020000
...................................................................TAAGTAGTATCCATTAAAGC.............................................................................................................................................................................................2012.002020000
..................................................................TTAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................2212.002020000
..................................................................................................................ACCGTTTGATGTACTACTTTAC............................................................................................................................................2211.001010000
..................................................................................................................ACCGTTTGATGTACTACTTTAGT...........................................................................................................................................2311.001010000
..................................................................TTAAGTAGTATCCATTAAAGGGTCT.........................................................................................................................................................................................2511.001010000
...................................................................TAAGTAGTATCCATTAAAGGGTG..........................................................................................................................................................................................2311.001001000
...................................................................TAAGTAGTATCCATTAAAGTCG...........................................................................................................................................................................................2211.001010000
...................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................2411.001001000
...................................................................................................................CCGTTTGATGTACTACTTTAGT...........................................................................................................................................2211.001010000
....................................................................................................................CGTTTGATGTACTACTTTAG............................................................................................................................................2011.001010000
.......................................................................TAGTATCCATTAAAGGGTCG.........................................................................................................................................................................................2011.001001000
.....................................................................AGTAGTATCCATTAAAGG.............................................................................................................................................................................................1811.001010000
droBip1
AGCAGTTATAGTATTCACTTTT------GGAGGAAAGTTTGAACCCCAGG--TGATGGCAGTTTCTTTAAGTAGTATCCATTAAAGGGTCGTTAACATATTT-----AAAATTGACCATTTAATGTACTACTTTGAGTAACTCCATATAAAGTCGTCCA-AGT-TGAAAATATCTTC----------------------CAAACAATATTATCTTCTTA------------------------------ATA------------T-ACAACTTAAASizeHit CountTotal NormTotal
No Reads
dp5
ACTCAGTAAAGTGATCGAGTTT------GAATAGTGATTTAGTTCTACAA--TTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAG-AAC-TG----------------------------------------------------------TGCGATTAGAGTTATCAATAGGC--------------AGG-TCCTCTCAAAASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...................................................................TAAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................24136575.0036575111696668028717812000
..................................................................TTAAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................2412621.0026210422020055900000
...................................................................TAAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................2311361.0013610261054127820000
....................................................................AAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................231814.008140126136055011000
....................................................................AAGTAGTATCCATTAAGAGGTCGT........................................................................................................................................................................................241504.00504011214027900000
...................................................................TAAGTAGTATCCATTAAGAGGTCC.........................................................................................................................................................................................241372.003720331005900000
...................................................................TAAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................221316.003160924616000000
...................................................................TAAGTAGTATCCATTAAGAGGTCGT........................................................................................................................................................................................251244.0024401213609600000
...................................................................TAAGTAGTATCCATTAAGAGG............................................................................................................................................................................................211191.0019101212805100000
..................................................................TTAAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................231177.001770213104400000
...................................................................TAAGTAGTATCCATTAAGAG.............................................................................................................................................................................................201161.00161007408700000
..................................................................TTAAGTAGTATCCATTAAGAGGTCC.........................................................................................................................................................................................251150.001500113511300000
...................................................................TAAGTAGTATCCATTAAGAGGTCT.........................................................................................................................................................................................241102.00102002307900000
...................................................................TAAGTAGTATCCATTAAGA..............................................................................................................................................................................................19196.0096015404100000
..................................................................................................................ACCTTTTGATGTACTACTTTAAA...........................................................................................................................................23183.008306680900000
....................................................................AAGTAGTATCCATTAAGAGGTCGC........................................................................................................................................................................................24179.007905670700000
...................................................................TAAGTAGTATCCATTAAGAGGC...........................................................................................................................................................................................22177.007700770000000
...................................................................TAAGTAGTATCCATTAAGAGGTCGC........................................................................................................................................................................................25163.006300560700000
..................................................................TTAAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................25155.0055061003900000
..................................................................................................................ACCTTTTGATGTACTACTTTAA............................................................................................................................................22153.0053063501200000
..................................................................TTAAGTAGTATCCATTAAGAGG............................................................................................................................................................................................22153.0053033801200000
...................................................................TAAGTAGTATCCATTAAGAGGTCA.........................................................................................................................................................................................24143.004300603700000
.....................................................................AGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................22131.003105302300000
..................................................................TTAAGTAGTATCCATTAAGAGGTCT.........................................................................................................................................................................................25128.002803170800000
..................................................................................................................ACCTTTTGATGTACTACTTTA.............................................................................................................................................21128.002801210600000
..................................................................TTAAGTAGTATCCATTAAGAGGC...........................................................................................................................................................................................23127.002700270000000
...................................................................TAAGTAGTATCCATTAAGAGGTCCC........................................................................................................................................................................................25127.002700220500000
.......................................................................TAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................20122.002201201900000
....................................................................AAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................21120.0020001001000000
...................................................................TAAGTAGTATCCATTAAGAGGTCGA........................................................................................................................................................................................25118.001800120600000
....................................................................AAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................22117.001701130300000
...................................................................................................................CCTTTTGATGTACTACTTTAAA...........................................................................................................................................22115.00150180600000
.................................................................................................................GACCTTTTGATGTACTACTTTA.............................................................................................................................................22114.00140190400000
....................................................................AAGTAGTATCCATTAAGAGGTCGTT.......................................................................................................................................................................................25113.00130190300000
........................................................................AGTATCCATTAAGAGGTCG.........................................................................................................................................................................................19113.001301101100000
..................................................................TTAAGTAGTATCCATTAAGAGGTT..........................................................................................................................................................................................24113.001300301000000
..................................................................TTAAGTAGTATCCATTAAGA..............................................................................................................................................................................................20113.00130080500000
...................................................................................................................CCTTTTGATGTACTACTTTAAAA..........................................................................................................................................23111.001100100100000
......................................................................GTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................21110.001000001000000
..................................................................TTAAGTAGTATCCATTAAGAG.............................................................................................................................................................................................2119.0090060300000
...................................................................TAAGTAGTATCCATTAAGAGGTT..........................................................................................................................................................................................2319.0090070200000
..................................................................................................................ACCTTTTGATGTACTACTTTAAAA..........................................................................................................................................2418.0080080000000
.................................................................CTTAAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................2518.0080070100000
...................................................................TAAGTAGTATCCATTAAGAGGTA..........................................................................................................................................................................................2317.0070010600000
....................................................................AAGTAGTATCCATTAAGAGGTCC.........................................................................................................................................................................................2317.0070060100000
...................................................................TAAGTAGTATCCATTAAGAGGTCGTT.......................................................................................................................................................................................2617.0070050200000
..................................................................TTAAGTAGTATCCATTAAGAGGTCA.........................................................................................................................................................................................2516.0060010500000
....................................................................AAGTAGTATCCATTAAGAGGTCGTC.......................................................................................................................................................................................2515.0050040100000
...................................................................TAAGTAGTATCCATTAAGAGGTAC.........................................................................................................................................................................................2415.0050010400000
...................................................................TAAGTAGTATCCATTAAGAC.............................................................................................................................................................................................2015.0050050000000
.................................................................CTTAAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................2415.0050030200000
...................................................................TAAGTAGTATCCATTAAGAGGTCCA........................................................................................................................................................................................2514.0040000400000
...................................................................TAAGTAGTATCCATTAAGAGGTCGCT.......................................................................................................................................................................................2614.0040030100000
.....................................................................AGTAGTATCCATTAAGAGGTCGT........................................................................................................................................................................................2314.0040400000000
...................................................................TAAGTAGTATCCATTAAGAGGTCGG........................................................................................................................................................................................2514.0040130000000
....................................................................AAGTAGTATCCATTAAGA..............................................................................................................................................................................................1814.0040000400000
....................................................................AAGTAGTATCCATTAAGAGGTCCC........................................................................................................................................................................................2414.0040040000000
droPer2
AGTCAGTAAAGTGATCGAGTTT------GAATAGTGATTTAGTTCCACAA--TTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCAACAG-AAC-TG----------------------------------------------------------TGCGATTAGAGTTATCAATAGGC--------------AGG-TCCTCTCAAAASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................TAAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................2414936.00493612458458601671
..................................................................TTAAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................241232.00232129196060
...................................................................TAAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................23146.004611228140
..................................................................TTAAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................25122.00220019021
...................................................................TAAGTAGTATCCATTAAGAGGTCGC........................................................................................................................................................................................25118.00181214010
....................................................................AAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................23118.00180315000
...................................................................TAAGTAGTATCCATTAAGAGGTCGT........................................................................................................................................................................................25116.00165110000
..................................................................TTAAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................23116.0016608020
...................................................................................................................CCTTTTGATGTACTACTTTAAA...........................................................................................................................................22111.00111001000
...................................................................TAAGTAGTATCCATTAAGAGGTCT.........................................................................................................................................................................................2418.008006020
...................................................................TAAGTAGTATCCATTAAGAGG............................................................................................................................................................................................2117.007205000
...................................................................TAAGTAGTATCCATTAAGAGGTCC.........................................................................................................................................................................................2417.007006010
..................................................................................................................ACCTTTTGATGTACTACTTTAA............................................................................................................................................2216.006105000
...................................................................TAAGTAGTATCCATTAAGAGGTCA.........................................................................................................................................................................................2416.006006000
...................................................................................................................CCTTTTGATGTACTACTTTAAAA..........................................................................................................................................2315.005401000
.......................................................................TAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................2015.005013010
...................................................................TAAGTAGTATCCATTAAGAG.............................................................................................................................................................................................2014.004004000
...................................................................TAAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................2214.004202000
..................................................................................................................ACCTTTTGATGTACTACT................................................................................................................................................1813.003300000
.....................................................................AGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................2212.002011000
..................................................................................................................ACCTTTTGATGTACTACTTTA.............................................................................................................................................2112.002002000
....................................................................AAGTAGTATCCATTAAGAGGTCGT........................................................................................................................................................................................2412.002101000
...................................................................TAAGTAGTATCCATTAAGAGGTCGA........................................................................................................................................................................................2512.002101000
.....................................................................................................................TTTTGATGTACTACTTTA.............................................................................................................................................1812.002200000
..................................................................................................................ACCTTTTGATGTACTACTTTAAA...........................................................................................................................................2312.002200000
..................................................................TTAAGTAGTATCCATTAAGAGGTCGC........................................................................................................................................................................................2612.002200000
..................................................................TTAAGTAGTATCCATTAAGAGGTCC.........................................................................................................................................................................................2512.002001010
..................................................................TTAAGTAGTATCCATTAAGAGGTT..........................................................................................................................................................................................2411.001001000
..................................................................TTAAGTAGTATCCATTAAGAGGTCA.........................................................................................................................................................................................2511.001010000
..................................................................TTAAGTAGTATCCATTAAGA..............................................................................................................................................................................................2011.001001000
..................................................................TTAAGTAGTATCCATTAAGAGGTA..........................................................................................................................................................................................2411.001100000
..................................................................TTAAGTAGTATCCATTAAGAGG............................................................................................................................................................................................2211.001001000
..................................................................TTAAGTAGTATCCATTAAGAGT............................................................................................................................................................................................2211.001000001
...................................................................TAAGTAGTATCCATTAAGAGGTA..........................................................................................................................................................................................2311.001001000
....................................................................AAGTAGTATCCATTAAGAGG............................................................................................................................................................................................2011.001001000
.........................................................................GTATCCATTAAGAGGTCG.........................................................................................................................................................................................1811.001001000
..................................................................TTAAGTAGTATCCATTAAGAGGTCT.........................................................................................................................................................................................2511.001001000
...................................................................TAAGTAGTATCCATTAAGAGGTAA.........................................................................................................................................................................................2411.001001000
droWil2
A-----------------------------------------------------------GATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCAACAA-ATATA-----GA----------AAGTATT----------GAAAAAGT-----------------------------GTTCATTT-------------GATCTGG-TCATTGAAAAASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................TAAGTAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................241104798.001047980156010455191
....................................................................AAGTAGTAACCTTTAAAGGGTCGT........................................................................................................................................................................................241516.005160605100
....................................................................AAGTAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................231370.0037001703530
...................................................................TAAGTAGTAACCTTTAAAGGGTCGT........................................................................................................................................................................................251355.003550203521
..................................................................................................................ATCCTTTAAGTTACTACTTGCA............................................................................................................................................221330.003300803220
...................................................................TAAGTAGTAACCTTTAAAGGGTCT.........................................................................................................................................................................................241251.002510002510
...................................................................TAAGTAGTAACCTTTAAAGGGTC..........................................................................................................................................................................................231162.001620001620
..................................................................TTAAGTAGTAACCTTTAAAGGGTC..........................................................................................................................................................................................241103.001030001030
...................................................................TAAGTAGTAACCTTTAAAGGGTCA.........................................................................................................................................................................................241102.001020001011
.....................................................................AGTAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................22196.0096000960
...................................................................TAAGTAGTAACCTTTAAAGGGTCC.........................................................................................................................................................................................24179.0079000790
...................................................................TAAGTAGTAACCTTTAAAGGGTCGA........................................................................................................................................................................................25159.0059000590
...................................................................TAAGTAGTAACCTTTAAAGGGTCGC........................................................................................................................................................................................25141.0041000410
...................................................................TAAGTAGTAACCTTTAAAGGTCG..........................................................................................................................................................................................23130.0030000300
.................................................................................................................GATCCTTTAAGTTACTACTTGC.............................................................................................................................................22128.0028020260
....................................................................AAGTAGTAACCTTTAAAGGGTCGTT.......................................................................................................................................................................................25126.0026010250
...................................................................TAAGTAGTAACCTTTAAAGGGT...........................................................................................................................................................................................22118.0018010170
....................................................................AAGTAGTAACCTTTAAAGGGTCGC........................................................................................................................................................................................24118.0018000180
...........................................................................................TTTGTCCAATTCTTTTAAAGTCG..................................................................................................................................................................23113.0013010120
...................................................................TAAGTAGTAACCTTTAAAGGGTCGTT.......................................................................................................................................................................................26111.0011000110
..................................................................................................................ATCCTTTAAGTTACTACTTGC.............................................................................................................................................21110.0010000100
..................................................................TTAAGTAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................25110.0010000100
.......................................................................TAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................20110.0010000100
...................................................................TAAGTAGTAACCTTTAAAGG.............................................................................................................................................................................................2017.00701060
..................................................................................................................ATCCTTTAAGTTACTACTTGT.............................................................................................................................................2117.00700070
...................................................................TAAGTAGTAACCTTTAAAGGG............................................................................................................................................................................................2116.00600060
....................................................................AAGTAGTAACCTTTAAAGGGT...........................................................................................................................................................................................2116.00600060
...................................................................TAAGTAGTAACCTTTAAAGGGTCGTA.......................................................................................................................................................................................2616.00600060
.....................................................................AGTAGTAACCTTTAAAGGGTCGTT.......................................................................................................................................................................................2415.00501040
.....................................................................AGTAGTAACCTTTAAAGGG............................................................................................................................................................................................1915.00500050
...................................................................TAAGTAGTAACCTTTAAAGGGTTCG........................................................................................................................................................................................2515.00500050
...................................................................TAAGTAGTAACCTTTAAAGTCG...........................................................................................................................................................................................2214.00400040
..................................................................TTAAGTAGTAACCTTTAAAGGGT...........................................................................................................................................................................................2314.00400040
...................................................................TAAGTAGTAACCTTTAAAG..............................................................................................................................................................................................1914.00400040
..................................................................................................................ATCCTTTAAGTTACTACTTGCT............................................................................................................................................2214.00400040
......................................................................GTAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................2114.00400040
.................................................................................................................GATCCTTTAAGTTACTACTTGT.............................................................................................................................................2213.00300030
...................................................................................................................TCCTTTAAGTTACTACTTGCAG...........................................................................................................................................2213.00301020
..................................................................TTAAGTAGTAACCTTTAAAGGGTCT.........................................................................................................................................................................................2513.00300030
....................................................................AAGTAGTAACCTTTAAAGGGTCGTA.......................................................................................................................................................................................2512.00200020
........................................................................................................................................GAATGTGTTTCTGAAATCAACAA-AA..................................................................................................................2512.00200020
........................................................................AGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................1912.00200020
....................................................................AAGTAGTAACCTTTAAAGGGTCGCC.......................................................................................................................................................................................2512.00200020
..................................................................................................................ATCCTTTAAGTTACTACTTGCAA...........................................................................................................................................2312.00200020
..................................................................................................................ATCCTTTAAGTTACTACTTGCAT...........................................................................................................................................2312.00200020
...................................................................TAAGTAGTAACCTTTAAAGGGTCCA........................................................................................................................................................................................2512.00200020
.....................................................................................................................CTTTAAGTTACTACTTGC.............................................................................................................................................1811.00100010
...................................................................TAAGTAGTAACCTTTAAAGGGTCGTTA......................................................................................................................................................................................2711.00100010
....................................................................AAGTAGTAACCTTTAAAGGGTC..........................................................................................................................................................................................2211.00100010
..................................................................................................................ATCCTTTAAGTTACTACTTG..............................................................................................................................................2011.00100010
..................................................................................................................ATCCTTTAAGTTACTACTTGCC............................................................................................................................................2211.00100010
.................................................................................................................GATCCTTTAAGTTACTACTTGCA............................................................................................................................................2311.00100010
........................................................................................................................................GAATGTGTTTCTGAAATCAACA......................................................................................................................2211.00100010
...................................................................TAAGTAGTAACCTTTAAAGGGTG..........................................................................................................................................................................................2311.00100010
...................................................................TAAGTAGTAACCTTTAAAGGGTT..........................................................................................................................................................................................2311.00100010
....................................................................AAGTAGTAACCTTTAAAGGGTCTC........................................................................................................................................................................................2411.00100010
.......................................................................TAGTAACCTTTAAAGGGTC..........................................................................................................................................................................................1911.00101000
.................................................................................................................GATCCTTTAAGTTACTACTTG..............................................................................................................................................2111.00100010
...................................................................TAAGTAGTAACCTTTAAAGGGTTT.........................................................................................................................................................................................2411.00100010
.....................................................................AGTAGTAACCTTTAAAGGGTC..........................................................................................................................................................................................2111.00100010
....................................................................AAGTAGTAACCTTTAAAGGGTCT.........................................................................................................................................................................................2311.00100010
.........................................................................GTAACCTTTAAAGGGTCG.........................................................................................................................................................................................1811.00100010
....................................................................AAGTAGTAACCTTTAAAGG.............................................................................................................................................................................................1911.00100010
droVir3
----------------------------------------------------------------CCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAGCAAATCAGCAA-ATCGA-----TA----------------------------AGA---CA-----------AACTAAAAAATTTAAATCATTGCTAAG-----------GCT-TGCT-GCAATGAAAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................TAAGTAGTAACCATTAAGAGGTTG.........................................................................................................................................................................................24130837.00308370071310070143622112111402404000031194274113090115028000001048191945553042360001312864972602110002200013121
..................................................................................................................ACCTTTTAATGTACTACTTATG............................................................................................................................................221979.009790005780000000000000000000000000000000710000000114121319152432272520100642100000882200000016192426
...................................................................TAAGTAGTAACCATTAAGAGGTTT.........................................................................................................................................................................................241776.00776000700000100000000000000000000000001000000000000000101000007650000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTT..........................................................................................................................................................................................231183.001830007400000000000000000000000010010012100100000100114734200017610000000000000000001
...................................................................TAAGTAGTAACCATTAAGAGGT...........................................................................................................................................................................................221161.00161000360000000000000000000000000000000000000000023610101391019110002920000000000000000100
...................................................................TAAGTAGTAACCATTAAGAGGTTGT........................................................................................................................................................................................25169.0069000150000000000000000000000000000001320000000000100030310002360000000000000001001
...................................................................TAAGTAGTAACCATTAAGAGG............................................................................................................................................................................................21160.0060000120000000000000000000000000000000000000000011114553530001160000000100000000001
...................................................................TAAGTAGTAACCATTAAGAGGTTC.........................................................................................................................................................................................24144.004400010000000000000000000000000000000000000000000000000000000430000000000000000000
.................................................................CTTAAGTAGTAACCATTAAGAGGT...........................................................................................................................................................................................24144.00440002000000000000000000000000000000000000000104314284335000400000000000000000000
....................................................................AAGTAGTAACCATTAAGAGGTTG.........................................................................................................................................................................................23136.003600230000000000000000000000000000000100000000000000000000000300000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTTA.........................................................................................................................................................................................24133.003300000000001000000000000000000000000000000000000000000000000320000000000000000000
..................................................................................................................ACCTTTTAATGTACTACTTA..............................................................................................................................................20128.00280004000000000000000000000000000000100000000001104231333000100000001000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTTGA........................................................................................................................................................................................25124.002400010000000000000000000000000000000000000000000000000000000230000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTTGC........................................................................................................................................................................................25124.0024000110000000000000000000000000000000000000000000000000000000130000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTTGTT.......................................................................................................................................................................................26121.002100040000000000000000000000000000000000000000000000020100002120000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTTGTC.......................................................................................................................................................................................26121.00210005000000000000000000100000000000000000000000000001113000360000000000000000000
..................................................................TTAAGTAGTAACCATTAAGAGGTTG.........................................................................................................................................................................................25118.001800000000000000000000000000000000000000000000000001000000000170000000000000000000
.....................................................................AGTAGTAACCATTAAGAGGTTG.........................................................................................................................................................................................22117.001700010000000000000000000000000000000000000000000000000000000160000000000000000000
..................................................................TTAAGTAGTAACCATTAAGAGGTT..........................................................................................................................................................................................24115.00150008000000000000000000000000000000001000000000000011000000040000000000000000000
...................................................................TAAGTAGTAACCATTAAGA..............................................................................................................................................................................................19111.00110002000000000000000000000000000000000000000000000001000000150000001000000000010
..................................................................................................................ACCTTTTAATGTACTACTTAT.............................................................................................................................................2119.0090006000000000000000000000000000000000000000000000000000000030000000000000000000
..................................................................................................................ACCTTTTAATGTACTACTTATT............................................................................................................................................2217.0070003000000000000000000000000000000000000000000000000010000020000000000000010000
...................................................................TAAGTAGTAACCATTAAGAG.............................................................................................................................................................................................2017.0070003000000000000000000000000000000000000000000001000000000020000000000000010000
...................................................................TAAGTAGTAACCATTAAGAGGTTGTTT......................................................................................................................................................................................2717.0070000000000000000000000000000000100000000000000001000000000050000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTC..........................................................................................................................................................................................2316.0060006000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTTGTA.......................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000001000100000000220000000000000000000
..................................................................................................................ACCTTTTAATGTACTACTTATC............................................................................................................................................2215.0050004000000000000000000000000000000000000000000000000000000010000000000000000000
..................................................................TTAAGTAGTAACCATTAAGAGGT...........................................................................................................................................................................................2315.0050001000000000000000000000000000000000000000000000001010000200000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGC...........................................................................................................................................................................................2215.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CTTTTAATGTACTACTTATGACA.........................................................................................................................................2314.0040000000000000000000000000000000000000000000001000020100000000000000000000000000
...........................................................................................TTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATG............................................................................................................................................3914.0040000000000000000000000000000000000000000000000011010100000000000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTCT.........................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
...................................................................................................................CCTTTTAATGTACTACTTATG............................................................................................................................................2114.0040003000000000000000000000000000000000000000000100000000000000000000000000000000
.................................................................CTTAAGTAGTAACCATTAAGAGG............................................................................................................................................................................................2314.0040001000000000000000000000000000000000000000000000010000000110000000000000000000
.........................................................................GTAACCATTAAGAGGTTG.........................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
.................................................................................................................CACCTTTTAATGTACTACTTATG............................................................................................................................................2314.0040001000000000000000000000000000000100000000000000001001000000000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTTGTCC......................................................................................................................................................................................2713.0030002000000000000000000000000000000000000000000000001000000000000000000000000000
........................................................................AGTAACCATTAAGAGGTTG.........................................................................................................................................................................................1913.0030002000000000000000000000000000000000000000000000000000000010000000000000000000
....................................................................................................................CTTTTAATGTACTACTTATG............................................................................................................................................2013.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................ACCTTTTAATGTACTACT................................................................................................................................................1813.0030000000000000000000000000000000000000000000000002010000000000000000000000000000
...................................................................TAAGTAGTAACCATTAAGAGGTCC.........................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000020000000000000000010

Generated: 10/20/2015 at 10:18 PM