der_216

Name	Class	Family	Strand
ROO_I-int	LTR	Pao	+

TCCATATAGAAATCATTCCTAACTATTTCACTTATAATTGTATTCTTACATTTATCTGCCATATCTACCAGAGCTCTGGTAGCCAAATATGGTGCAGATGTAGTTGCATAAGTGAGTGACGGTGGTTAATTTGTAATTTTTAATATTTTTT *********************************...((((...((((((((...(((((((((((((((....)))))))....)))))))).)))))))).))))........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	GSM1528801 follicle cells	V040 embryo
............................................................................TGGTAGCCAAATATGGTGCAGATG...................................................	24	0	5	3.20	16	15	0	1
............................................................................TGGTAGCCAAATATGGTGCAGA.....................................................	22	0	5	1.60	8	8	0	0
........................................................................................................TGCATAAGTGAGTGACGG.............................	18	0	1	1.00	1	1	0	0
......................................................GCGGCCATATCTACCAGA...............................................................................	18	2	3	0.33	1	1	0	0
............................................................................TTGTAGCCAAATATGGTGCAGATG...................................................	24	1	5	0.20	1	1	0	0
......................................................TGCGCCATATCTACCAGA...............................................................................	18	2	5	0.20	1	1	0	0
............................................................................TGGTAGCCAAATATGGTGCAGAA....................................................	23	1	5	0.20	1	1	0	0
............................................................................TGGTAGCCAAATATGGTGCAG......................................................	21	0	6	0.17	1	1	0	0
.............................................................................GGTAGCCAAATATGGTGCAGATG...................................................	23	0	6	0.17	1	1	0	0
..............................................................................GTAGCCAAATATGGTGCAGATG...................................................	22	0	6	0.17	1	1	0	0
............................................................................TGGTAGCCAAATATGGGGCAGATGGAT................................................	27	3	6	0.17	1	0	1	0
............................................................................TTGTAGCCAAATATGGTGCA.......................................................	20	1	6	0.17	1	1	0	0
............................................................................TGGTAGCCAAATATGGGGCAGATGAAT................................................	27	3	6	0.17	1	0	1	0
.............................................................................GGTAGCCAAATATGGTGCAG......................................................	20	0	7	0.14	1	1	0	0
.......................................GTATTCGTACATTTCTCAGC............................................................................................	20	3	18	0.06	1	1	0	0

AGGTATATCTTTAGTAAGGATTGATAAAGTGAATATTAACATAAGAATGTAAATAGACGGTATAGATGGTCTCGAGACCATCGGTTTATACCACGTCTACATCAACGTATTCACTCACTGCCACCAATTAAACATTAAAAATTATAAAAAA *********************************...((((...((((((((...(((((((((((((((....)))))))....)))))))).)))))))).))))........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V040 embryo
............................................................TATAGATGGTATCGAGAG.........................................................................	18	2	3	0.33	1	1

Species	Coordinate	ID	Alignment
droEre2	scaffold_4929:26372985-26373135 -	der_216	TCCATATAGAAATCATTCCTAACTATTTC-------ACTTATAATTGTATTCTTACATTTATCTGCCATATCTACCAGAGCTCTGGTAGCCAAATATGGTGCAGATGTAGTTGCATAAGTGAGTGACGGTGGTTAATTTGTAATTTTTAATATTTTTT
droYak3	v2_chr2h_random_004:604760-604906 -		TCCATATAGAAATCATTCCTAATTATTGC-------ACTAATAACTTGGTTTTTACATTTATCTGCAATATCTACCAGAACCCTGGTAGCCAAATATGGTGCAGATGCAGTTCCGTAAG----TGACTGTGGTTAATTTATATTTTTTAATTTTTTTT
droSec2	scaffold_8471:1079-1225 +		TCCATATAGAAATCATTCCTAATTATTGC-------ACTAATAACTTGGTTTTTACATTTATCTGCAATATCTACCAGAACCCTGGTAGCCAAATATGGTGCAGATGCAGTTCCGTAAG----TGACTGTGGTTAATTTATATGTTTTAATTTTTTCT
droSim2	node_1006:25-171 +		TCCATATAGAAATCATTCCTAATTATTGC-------ACTAATAACTTGGTTTTTACATTTATCTGCAATATCTACCAGAACCCTGGTAGCCAAATATGGTGCAGATGCAGTTCCGTAAG----TGACTGTGGTTAATTTATATGTTTTAATTTTTTCT
dm3	chr2RHet:2864071-2864217 +		TCCATATAGAAATCATTCCTAATTATTGC-------ACTAATAACTTGGTTTTTACATTTATCTGCAATATCTAGCAGAACCCTGGTAGCCAAATATGGTGCAGATGGAGTTCCGTAAG----TGACTGTGGTTAATTTATATTTTTTAATTTTTTTT
droEug1	scf7180000409035:215-360 +		TCCATATAAAAATCATTCCTAATTATCTC-------ACTTACATCTTTGTTTTTGCATTTATCAGCAATATCTACTAGAACTCTAGTAGCTAAATATGGTGCAGATGCTGTACCATATG----TGACTGTTGTCAATTTATAATTTTTAAT-TTTTCA
droBia1	scf7180000301481:10375-10521 +		TCCATATAAAAATCACTCCTAATTATCTC-------ACTTACATCTTTGTTTTTGCATTTATCAGCAATATCTACTTGAACTCTAGTAGCTAAATATGGTGCAGATGCAGAACCATATG----TGACTGTTGTCAATTTATATTTTTTAATTTTGTCA
droTak1	scf7180000413756:58-203 -		TCCATATAGAAATCATTCCTAATTATTTC-------ACTCAAATATTTATTTTTACATTTATCAGCAATATCTACCAGAACTCTGGTAGCTAAATATGGTGCGGATGCAGTACCATATG----TGACTGTTGTCAATTTATAATTTTTTAT-TTTTCA
droEle1	scf7180000489118:151-296 +		TCCATATAGAAATCATTCCTAATTATTTC-------ACTCAAATATTTATTTTTACATTTATCAGCAATATCTACCAGAACTCTGGTAGCTAAATATGGTGCGGATGCAGTACCATATG----TGACTGTTGTCAATTTATAATTTTT-ATTTTTTCA
droRho1	scf7180000780084:808966-809112 -		TCCATATAGAAATCATTCCTAATTATTTC-------ACTTAAGGTTTTGTTTTGGCATTTATCTGCAATATCTACCTAAACTCTTGTAGCTAGATATGGTGCAGATGCAGTACAGTAAG----TAACTGTTGTTAACTTATAATTTTTAATTTTTTGA
droFic1	scf7180000454072:1236-1382 +		TCCATATAGAAATCGTTTATAATCACATC-------TTTAATTGACTGATCCTGACATCGATTTCCTATCTCAGCTAACACCCTGGTTGCTAAATACGGAGCTGATGCCGTACCATATG----TAACTGTGGTTAGCTTAAAATCTTTTATTTTGTTT
droKik1	scf7180000302512:27753-27899 +		TCCATATAGAAATCATTCCTAATTATTTC-------ACAGATTTTTTGGTTTTCACATTTTTCTGCAATATCTACCAAGACTCTGGTAGCCAAATATGGTGCAGATGCAGTACCGTAAG----TGACTGTTGTCAATTTGTAATTTTTAATTTTTTCT
droAna3	scaffold_5803:7583-7729 -		TCCATATAAAAATCATTTTTTATTATTTC-------ACCAATCATTTTGTTTTCACAATTTTCACCCACATCTGCTAATACTCTAGTTGCTAAATATGGGGCGGAAGCGGTACCATAAG----TAACCGTAGTTAGTTTGTAGGTTTTAACCTTTTTT
droBip1	scf7180000393020:797-943 -		TCCATATAAAAATCATTTTTTATTATTTC-------CCCGATCATTTTGTTTTTGCAATTTTCACCTACATCTGCCAATACTCTGGTTGCTAAATATGGGGCGGAAGCGGTACCATAAG----TTACAGTAGTTAATTTGTAGGTTTTTATTTTTGTT
dp5	Unknown_group_355:344-490 +		TCCATATAAAAATCATTCTTTATGATTTC-------CCTAATTGCTTGATTTTTGCAATTATCTGCTATTGCAACAAGCACCCTGGTTGCTAAGTAGGGTGCTGAAGCTGTACCGTACG----TAACGGTTGTAAGTTTATAATCTTTTAACTTTTCG
droPer2	scaffold_5302:1085-1231 -		TCCATATAAAAATCATTCTTTATGATTTC-------CCTAATTGCTTGATTTTTGCAATTATCTGCTATAGCAACAAGCACCCTGGTTGCTAAGTAGGGTGCTGTAGCTGTACCGTACG----TAACGGTTGTAAGTTTATAATCTTTTAACTTTTCG
droWil2	scf2_1100000005889:1265-1411 +		TCCATGTAGAATTCATCTCGGATAATTTC-------ACTAATCACTTTATCCTGACATCTGTTTGCTATCTCTGCAAGTACTCTTGTAGCTAAATAAGGTGCTGATGCCATACCGTACG----TTACTGTTGTCAATTTATATATTCTTAATTTTTTT
droVir3	scaffold_12970:545086-545226 +		TCGATATAAATGTAATTTCTGATTATTTC-------CCCAACGACTTTATTTTTACAATTATTAGCTAACTCTACCAGCACTCCAGTTGCTAAGGATGGGGCTGACGCGGTACCGTATT----CAACCGTTGTGAATTTGTAACCTGCTAAT------
droMoj3	scaffold_6497:253136-253280 +		TCCATATACAAATCTGTTTTAATTATTTC-------TTTAATTGT--TATTATCGCAATTATTAGCTATGTCTAAAAGAACTCTAGTGGCTAAGTAAGGAGCTGATGCAGTACCATAAG----TGACTGTGGTAAGCTTAAAGTTCTTTAATTTTTTA
droGri2	scaffold_15252:7609882-7610034 +		TCAACATAGAAATCATTTTCCAATGCAGCAGCTCCTAATGGAAGTTCTCTTTTTACCTTT-TGTACCAGATATTGTAGGCATTTTGTGCCTAAATATTGTGCAGCCTTTGTTCCATATG----TAACTGTTTTCAATCTGTAGTACCGTAAATCCTCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

TCCATATAGAAATCATTCCTAACTATTTC-------ACTTATAATTGTATTCTTACATTTATCTGCCATATCTACCAGAGCTCTGGTAGCCAAATATGGTGCAGATGTAGTTGCATAAGTGAGTGACGGTGGTTAATTTGTAATTTTTAATATTTTTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................TGGTAGCCAAATATGGTGCAGATG...................................................	24	5	3.20	16	15	0	0	1	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGA.....................................................	22	5	1.60	8	8	0	0	0	0	0	0
...............................................................................................................TGCATAAGTGAGTGACGG.............................	18	1	1.00	1	1	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGAA....................................................	23	5	0.20	1	1	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAG......................................................	21	6	0.17	1	1	0	0	0	0	0	0
....................................................................................GGTAGCCAAATATGGTGCAGATG...................................................	23	6	0.17	1	1	0	0	0	0	0	0
.....................................................................................GTAGCCAAATATGGTGCAGATG...................................................	22	6	0.17	1	1	0	0	0	0	0	0
....................................................................................GGTAGCCAAATATGGTGCAG......................................................	20	7	0.14	1	1	0	0	0	0	0	0

droYak3

TCCATATAGAAATCATTCCTAATTATTGC-------ACTAATAACTTGGTTTTTACATTTATCTGCAATATCTACCAGAACCCTGGTAGCCAAATATGGTGCAGATGCAGTTCCGTAAG----TGACTGTGGTTAATTTATATTTTTTAATTTTTTTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................TTACATTTATCTGCAATATCTACCAGA...............................................................................	27	13	8.85	115	0	114	1	0	0	0	0	0	0	0	0
......................................................................................TAGCCAAATATGGTGCAGATGCAGT...............................................	25	10	6.90	69	0	20	26	4	0	0	5	0	0	0	14
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTA..................	26	12	5.17	62	11	25	22	1	0	0	0	0	0	0	3
....TATAGAAATCATTCCTAATTATTGC-------AC........................................................................................................................	27	13	4.69	61	0	52	9	0	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATTTATA................	27	12	3.17	38	0	32	2	3	0	0	1	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATGCAGT...............................................	28	10	2.90	29	0	9	11	3	0	0	2	0	0	0	4
...................................................................................TGGTAGCCAAATATGGTGCAGATGCAG................................................	27	10	2.70	27	0	22	1	1	0	0	0	0	0	0	3
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATTTA..................	25	12	1.92	23	1	20	2	0	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATT....................	24	12	1.83	22	2	5	15	0	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATGC..................................................	25	10	1.80	18	0	5	3	10	0	0	0	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGACTG.............................	26	10	1.70	17	0	5	1	11	0	0	0	0	0	0	0
....................................................................................GGTAGCCAAATATGGTGCAGATGCAG................................................	26	10	1.30	13	0	2	0	0	0	0	0	0	0	0	11
....................................................TTACATTTATCTGCAATATCTACCA.................................................................................	25	13	1.23	16	0	12	4	0	0	0	0	0	0	0	0
................................................................................................TGGTGCAGATGCAGTTCCGTAAG----TGAC...............................	27	10	1.20	12	0	1	11	0	0	0	0	0	0	0	0
....................................................TTACATTTATCTGCAATATCTACCAG................................................................................	26	13	1.15	15	0	12	1	2	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTATA................	28	12	1.08	13	5	7	1	0	0	0	0	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGACTGT............................	27	10	1.00	10	0	3	1	5	0	0	1	0	0	0	0
......................................................................................TAGCCAAATATGGTGCAGATGCAGTTC.............................................	27	9	0.89	8	0	3	5	0	0	0	0	0	0	0	0
............TCATTCCTAATTATTGC-------ACTAATAACT................................................................................................................	27	12	0.75	9	0	6	3	0	0	0	0	0	0	0	0
......................................................................................TAGCCAAATATGGTGCAGATGCAGC...............................................	25	10	0.70	7	0	0	7	0	0	0	0	0	0	0	0
.....................................................TACATTTATCTGCAATATCTACCAGA...............................................................................	26	13	0.62	8	0	8	0	0	0	0	0	0	0	0	0
..............................................................................................TATGGTGCAGATGCAGTTCCGTAAG----TGAC...............................	29	10	0.60	6	0	0	6	0	0	0	0	0	0	0	0
.......................................................................................AGCCAAATATGGTGCAGATGCAGT...............................................	24	10	0.60	6	0	5	1	0	0	0	0	0	0	0	0
......TAGAAATCATTCCTAATTATTGC-------AC........................................................................................................................	25	13	0.54	7	0	7	0	0	0	0	0	0	0	0	0
....................................................TTACATTTATCTGCAATATCTACCAGAA..............................................................................	28	13	0.54	7	0	6	0	1	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATGCA.................................................	26	10	0.50	5	0	5	0	0	0	0	0	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTTAATTTATATTT.............	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTTAATTTATA................	26	12	0.50	6	0	5	0	0	0	0	1	0	0	0	0
....................................................................................................................AAG----TGACTGTGGTTAATTTATATTTT............	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....TATAGAAATCATTCCTAATTATTGC-------ACT.......................................................................................................................	28	13	0.46	6	0	5	1	0	0	0	0	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGAC...............................	24	10	0.40	4	0	0	4	0	0	0	0	0	0	0	0
.....ATAGAAATCATTCCTAATTATTGC-------AC........................................................................................................................	26	13	0.38	5	0	5	0	0	0	0	0	0	0	0	0
...............................................................................ACCCTGGTAGCCAAATATGGTGCAGA.....................................................	26	12	0.33	4	0	3	0	1	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATC....................	24	13	0.31	4	0	0	4	0	0	0	0	0	0	0	0
...................TAATTATTGC-------ACTAATAACTTGGTT...........................................................................................................	25	13	0.31	4	0	3	1	0	0	0	0	0	0	0	0
...............................................................................................ATGGTGCAGATGCAGTTCCGTAAG----TGAC...............................	28	10	0.30	3	0	0	3	0	0	0	0	0	0	0	0
....................................................................................GGTAGCCAAATATGGTGCAGATGCAGT...............................................	27	10	0.30	3	0	2	1	0	0	0	0	0	0	0	0
........................................................................TACCAGAACCCTGGTAGCCAAATATGG...........................................................	27	12	0.25	3	0	3	0	0	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATG...................................................	24	12	0.25	3	0	3	0	0	0	0	0	0	0	0	0
...............TTCCTAATTATTGC-------ACTAATAACTTGG.............................................................................................................	27	13	0.23	3	0	3	0	0	0	0	0	0	0	0	0
...............................................................TGCAATATCTACCAGAACCCTGGTAGCC...................................................................	28	13	0.23	3	0	3	0	0	0	0	0	0	0	0	0
.....................................................TACATTTATCTGCAATATCTACCAGAA..............................................................................	27	13	0.23	3	0	2	1	0	0	0	0	0	0	0	0
.....................................................TACATTTATCTGCAATATCTACCA.................................................................................	24	13	0.23	3	0	3	0	0	0	0	0	0	0	0	0
....TATAGAAATCATTCCTAATTATTGC-------..........................................................................................................................	25	13	0.23	3	0	1	2	0	0	0	0	0	0	0	0
.............................................................TCTGCAATATCTACCAGAACCCTGG........................................................................	25	14	0.21	3	0	2	1	0	0	0	0	0	0	0	0
...............................................................TGCAATATCTACCAGAACCCTGGTA......................................................................	25	14	0.21	3	0	3	0	0	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATGCAA................................................	27	10	0.20	2	0	1	0	1	0	0	0	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGACT..............................	25	10	0.20	2	0	1	1	0	0	0	0	0	0	0	0
......................................................................................TAGCCAAATATGGTGCAGATGCAG................................................	24	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................TAGCCAAATATGGTGCAGATGCAGTT..............................................	26	10	0.20	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................GTGCAGATGCAGTTCCGTAAG----TGAC...............................	25	10	0.20	2	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................CGTAAG----TGACTGTGGTTAATTTATA................	25	12	0.17	2	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATT....................	23	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATTT...................	24	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................ACCAGAACCCTGGTAGCCAAATATGG...........................................................	26	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGAT....................................................	23	12	0.17	2	0	0	1	1	0	0	0	0	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTTAATTTA..................	27	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0
..........................TGC-------ACTAATAACTTGGTTTTTACATT...................................................................................................	26	13	0.15	2	0	1	1	0	0	0	0	0	0	0	0
.......................................................CATTTATCTGCAATATCTACCAGAACCC...........................................................................	28	13	0.15	2	0	1	1	0	0	0	0	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATCTGCA...........................................................................................	26	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
....TATAGAAATCATTCCTAATTATTGC-------A.........................................................................................................................	26	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
...................TAATTATTGC-------ACTAATAACTTGGTTTA.........................................................................................................	27	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
TCCATATAGAAATCATTCCTAATTAT....................................................................................................................................	26	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATCTGCAATA........................................................................................	29	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
....................................................TTACATTTATCTGCAATATCTACCAGAACCCTG.........................................................................	33	13	0.15	2	0	0	0	0	0	0	0	0	0	0	2
....................................................TTACATTTATCTGCAATATCTACCAGAAC.............................................................................	29	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................TCTGCAATATCTACCAGAACCCTGGTA......................................................................	27	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................TTATCTGCAATATCTACCAGAACCC...........................................................................	25	14	0.14	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................TTTATCTGCAATATCTACCAGAACCC...........................................................................	26	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................CAATATCTACCAGAACCCTGG........................................................................	21	14	0.14	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................GCCAAATATGGTGCAGATGCAGTTCCG...........................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................AGCCAAATATGGTGCAGATGCAGTTCCG...........................................	28	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATGCAGC...............................................	28	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................GCAGATGCAGTTCCGTAAG----TGACT..............................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................ATGGTGCAGATGCAGTTCCGTAAG----TG.................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................AGATGCAGTTCCGTAAG----TGACT..............................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................TATGGTGCAGATGCAGTTCCGTAAG----T..................................	26	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................GCAGTTCCGTAAG----TGACTGTG...........................	21	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................GGTAGCCAAATATGGTGCAGATGCA.................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................TAGCCAAATATGGTGCAGATGCAGTA..............................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................TATGGTGCAGATGCAGTTCCGTAAG----C..................................	26	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................GCAGATGCAGTTCCGTAAG----TGACTGT............................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATGCAT................................................	27	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................GCAGATGCAGTTCCGTAAG----TGACTG.............................	25	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................AATATGGTGCAGATGCAGTTCCG...........................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATTTATAT...............	28	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----...................................	20	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGA................................	23	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................AATATGGTGCAGATGCAGT...............................................	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................GAACCCTGGTAGCCAAATATGGTGCA.......................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTA.......................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........ATCATTCCTAATTATTGC-------ACTAATAACT................................................................................................................	28	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................AACCCTGGTAGCCAAATATGGTGCA.......................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................ACCCTGGTAGCCAAATATGGTGCA.......................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTG..................	26	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.............CATTCCTAATTATTGC-------ACTAATAACT................................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............TCATTCCTAATTATTGC-------ACTAATAACTTG..............................................................................................................	29	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTT........................	20	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTT........................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAA......................	21	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................ACCCTGGTAGCCAAATATGGTGC........................................................	23	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTTAATT....................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................AAG----TGACTGTGGTTAATTTA..................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1
................................................................................................................CCGTAAG----TGACTGTGGTTAATTTA..................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................CGTAAG----TGACTGTGGTTAATTTA..................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGT.........................	19	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTATC.....................	22	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................CCCTGGTAGCCAAATATGGTGCAGA.....................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............TCATTCCTAATTATTGC-------ACTAATAAC.................................................................................................................	26	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................ACCAGAACCCTGGTAGCCAAATATGGTG.........................................................	28	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATT...................................................	24	12	0.08	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAAT.....................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTA...................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................AGAACCCTGGTAGCCAAATATGGTGCA.......................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTTAATT....................	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.......AGAAATCATTCCTAATTATTGC-------ACT.......................................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................TGGTTTTTACATTTATCTGCAATATC......................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................TACCAGAACCCTGGTAGCCAAATA..............................................................	24	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
..CATATAGAAATCATTCCTAATTAT....................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................TATTGC-------ACTAATAACTTGGTTTTTA.......................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................TTGC-------ACTAATAACTTGGTTT..........................................................................................................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.............................................TTGGTTTTTACATTTATCTGCAATA........................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................TTTTACATTTATCTGCAATATCTACC..................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................TACCAGAACCCTGGTAGCCAAATATG............................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.CCATATAGAAATCATTCCTAATTAT....................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......................................................ACATTTATCTGCAATATCTACCA.................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....................................................TTACATTTATCTGCAATATCTACCAGAAA.............................................................................	29	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATCTG.............................................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................TACATTTATCTGCAATATCTACCAAT...............................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
TCCATATAGAAATCATTCCTAATT......................................................................................................................................	24	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
................TCCTAATTATTGC-------ACTAATAACTTG..............................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................TTTTTACATTTATCTGCAATATCTACC..................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...................TAATTATTGC-------ACTAATAACTTGGT............................................................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................CCTAATTATTGC-------ACTAATAACTC...............................................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
................TCCTAATTATTGC-------ACTAATAACTTGGT............................................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......TAGAAATCATTCCTAATTATTGC-------ACC.......................................................................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
..........................................AACTTGGTTTTTACATTTATCTGCAATA........................................................................................	28	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................TCTACCAGAACCCTGGTAGCC...................................................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
....................................................TTACATTTATCTGCAATATCTACCAT................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....................................................TTACATTTATCTGCAATATCTA....................................................................................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..CATATAGAAATCATTCCTAATTATTGC-------AC........................................................................................................................	29	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...........................GC-------ACTAATAACTTGGTTTTTACATTTA.................................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................ATCTACCAGAACCCTGGTAGCC...................................................................	22	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................TCTACCAGAACCCTGGTAGCCAAATA..............................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......................................................ACATTTATCTGCAATATCTACCAGAACCC...........................................................................	29	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....TATAGAAATCATTCCTAATTATTG..................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.............................................TTGGTTTTTACATTTATCTGCAAT.........................................................................................	24	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGC.........................	18	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
....TATAGAAATCATTCCTAATTATTGC-------ACC.......................................................................................................................	28	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................TATTGC-------ACTAATAACTTGGTTTTTAC......................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
TCCATATAGAAATCATTCCTAATTATA...................................................................................................................................	27	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...................TAATTATTGC-------ACTAATAACTTGG.............................................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
................................................................GCAATATCTACCAGAACCCTGGTAGCC...................................................................	27	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.............................................TTGGTTTTTACATTTATCTGCAATATC......................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...ATATAGAAATCATTCCTAATTATTGC-------AC........................................................................................................................	28	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.............CATTCCTAATTATTGC-------AC........................................................................................................................	18	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................CTGCAATATCTACCAGAACCCTGGT.......................................................................	25	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................TGCAATATCTACCAGAACCCTGG........................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
................................................................GCAATATCTACCAGAACCCTGG........................................................................	22	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
............................................................ATCTGCAATATCTACCAGAACC............................................................................	22	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................TATCTGCAATATCTACCAGAACCC...........................................................................	24	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
............................................................ATCTGCAATATCTACCAGAACCCT..........................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................TTTATCTGCAATATCTACCAGAACCCT..........................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
........................................................ATTTATCTGCAATATCTACCAGAA..............................................................................	24	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
........................................................ATTTATCTGCAATATCTACCAGAACCC...........................................................................	27	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
........................................................ATTTATCTGCAATATCTACCAGA...............................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................TTATCTGCAATATCTACCAG................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................TTATCTGCAATATCTACCAGA...............................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
............................................................ATCTGCAATATCTACCAGAACCC...........................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0

droSec2

TCCATATAGAAATCATTCCTAATTATTGC-------ACTAATAACTTGGTTTTTACATTTATCTGCAATATCTACCAGAACCCTGGTAGCCAAATATGGTGCAGATGCAGTTCCGTAAG----TGACTGTGGTTAATTTATATGTTTTAATTTTTTCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................CAGATGCAGTTCCGTAAG----TGA................................	21	20	35.75	715	1	2	699	13
..............................................................................................TATGGTGCAGATGCAGTTCCG...........................................	21	20	7.40	148	1	1	145	1
......................................................................................................AGATGCAGTTCCGTAAG----TGAC...............................	21	20	5.75	115	1	0	111	3
..............................................................................................................TTCCGTAAG----TGACTGTGGTTA.......................	21	19	5.53	105	5	4	91	5
...................................................................................................TGCAGATGCAGTTCCGTAAG----T..................................	21	20	5.05	101	1	3	95	2
..................................................................................CTGGTAGCCAAATATGGTGCA.......................................................	21	19	3.53	67	0	1	66	0
..........................................................................................CAAATATGGTGCAGATGCAGT...............................................	21	20	2.75	55	0	4	51	0
...............................................................................................ATGGTGCAGATGCAGTTCCGT..........................................	21	20	2.55	51	1	0	50	0
..................................................................................................GTGCAGATGCAGTTCCGTAAG----...................................	21	20	2.50	50	0	0	47	3
....................................................................................................GCAGATGCAGTTCCGTAAG----TG.................................	21	20	2.40	48	1	4	42	1
.....................................................................................................CAGATGCAGTTCCGTAAG----TG.................................	20	20	2.30	46	3	12	24	7
.............................................................................................................GTTCCGTAAG----TGACTGTGGTT........................	21	19	2.05	39	4	0	34	1
.........................................................................................CCAAATATGGTGCAGATGCAGT...............................................	22	20	1.30	26	0	0	26	0
...............................................................TGCAATATCTACCAGAACCCT..........................................................................	21	18	1.28	23	1	0	22	0
......................................................................................................AGATGCAGTTCCGTAAG----TGA................................	20	20	1.25	25	0	0	25	0
.................................................................................................................CGTAAG----TGACTGTGGTTAATT....................	21	18	1.11	20	2	1	17	0
...........................................................................................AAATATGGTGCAGATGCAGTT..............................................	21	20	0.95	19	1	0	17	1
........................................................................................................ATGCAGTTCCGTAAG----TGACTG.............................	21	20	0.90	18	0	0	18	0
.................................................................................CCTGGTAGCCAAATATGGTGC........................................................	21	19	0.84	16	0	0	15	1
......................TTATTGC-------ACTAATAACTTGGT............................................................................................................	21	18	0.67	12	0	0	12	0
................................................................................................................CCGTAAG----TGACTGTGGTTAAT.....................	21	18	0.67	12	1	0	11	0
.....................................................TACATTTATCTGCAATATCTA....................................................................................	21	18	0.67	12	1	0	11	0
.............................................................................................................................ACTGTGGTTAATTTATATGTT............	21	18	0.61	11	0	0	11	0
.................................................................CAATATCTACCAGAACCCTGG........................................................................	21	18	0.61	11	3	0	8	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----...................................	20	20	0.60	12	0	0	10	2
...................................................................................................TGCAGATGCAGTTCCGTAAG----TG.................................	22	20	0.60	12	0	0	12	0
....................................................TTACATTTATCTGCAATATCT.....................................................................................	21	18	0.56	10	1	0	9	0
............................................................................................................AGTTCCGTAAG----TGACTGTGGT.........................	21	19	0.53	10	1	0	9	0
......................................................................................................AGATGCAGTTCCGTAAG----TG.................................	19	20	0.50	10	0	2	5	3
.....................................................................................................CAGATGCAGTTCCGTAAG----TGAC...............................	22	20	0.50	10	0	0	9	1
...................................................................................TGGTAGCCAAATATGGTGCAGA.....................................................	22	19	0.47	9	0	0	9	0
..............................................................................................TATGGTGCAGATGCAGTTCCGT..........................................	22	20	0.45	9	0	1	8	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAA......................	21	18	0.44	8	0	0	8	0
...................................................................................................................TAAG----TGACTGTGGTTAATTTA..................	21	18	0.44	8	0	1	7	0
..............................................................CTGCAATATCTACCAGAACCC...........................................................................	21	18	0.44	8	3	0	5	0
.........AAATCATTCCTAATTATTGC-------A.........................................................................................................................	21	19	0.42	8	1	0	7	0
..............ATTCCTAATTATTGC-------ACTAAT....................................................................................................................	21	18	0.39	7	0	0	7	0
.................................................................................CCTGGTAGCCAAATATGGTGCA.......................................................	22	19	0.37	7	0	0	7	0
.............CATTCCTAATTATTGC-------ACTAA.....................................................................................................................	21	19	0.37	7	0	0	7	0
..................................................................AATATCTACCAGAACCCTGGT.......................................................................	21	17	0.35	6	2	0	4	0
......................................................................................................AGATGCAGTTCCGTAAG----TGACT..............................	22	20	0.35	7	1	0	6	0
....................................................................................................GCAGATGCAGTTCCGTAAG----TGA................................	22	20	0.35	7	0	0	7	0
.................................................TTTTTACATTTATCTGCAATA........................................................................................	21	18	0.33	6	2	0	4	0
.......................TATTGC-------ACTAATAACTTGGTT...........................................................................................................	21	18	0.33	6	4	0	2	0
..............................................................................................................................CTGTGGTTAATTTATATGTTT...........	21	18	0.33	6	1	1	4	0
...................................................TTTACATTTATCTGCAATATC......................................................................................	21	18	0.33	6	3	0	3	0
...........................................................................................................................TGACTGTGGTTAATTTATATG..............	21	18	0.33	6	2	1	3	0
...................................................................................TGGTAGCCAAATATGGTGCAG......................................................	21	19	0.32	6	0	0	5	1
...............................................................................ACCCTGGTAGCCAAATATGGT..........................................................	21	19	0.32	6	0	0	6	0
................................................................................................TGGTGCAGATGCAGTTCCGT..........................................	20	20	0.30	6	0	0	6	0
.................................................................................................................CGTAAG----TGACTGTGGTTAAT.....................	20	18	0.28	5	0	1	4	0
................................................................GCAATATCTACCAGAACCCTG.........................................................................	21	18	0.28	5	3	0	2	0
............TCATTCCTAATTATTGC-------ACTA......................................................................................................................	21	19	0.26	5	0	0	5	0
...........ATCATTCCTAATTATTGC-------ACT.......................................................................................................................	21	19	0.26	5	0	1	4	0
............................................................................................................AGTTCCGTAAG----TGACTGTGGTT........................	22	19	0.26	5	0	0	4	1
...........................................................................................................CAGTTCCGTAAG----TGACTGTGG..........................	21	19	0.26	5	4	0	0	1
............................................................................................................AGTTCCGTAAG----TGACTGTGG..........................	20	19	0.26	5	1	0	4	0
................................................................................................TGGTGCAGATGCAGTTCCG...........................................	19	20	0.25	5	0	1	4	0
.......................................................................................................GATGCAGTTCCGTAAG----TGACT..............................	21	20	0.25	5	0	0	5	0
.........................................................................................CCAAATATGGTGCAGATGCAG................................................	21	20	0.25	5	2	0	3	0
...........................................................................................AAATATGGTGCAGATGCAGT...............................................	20	20	0.25	5	0	0	5	0
.....................................CTAATAACTTGGTTTTTACAT....................................................................................................	21	17	0.24	4	0	0	4	0
................................................................................................................CCGTAAG----TGACTGTGGTTAATT....................	22	18	0.22	4	0	0	4	0
...........................................................................................................................TGACTGTGGTTAATTTATATGT.............	22	18	0.22	4	0	0	4	0
........................ATTGC-------ACTAATAACTTGGTTT..........................................................................................................	21	18	0.22	4	0	0	4	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTTA.......................	22	19	0.21	4	0	0	4	0
...ATATAGAAATCATTCCTAATT......................................................................................................................................	21	19	0.21	4	0	0	4	0
....................................................................................GGTAGCCAAATATGGTGCAGA.....................................................	21	19	0.21	4	0	0	4	0
.....................ATTATTGC-------ACTAATAACTTGG.............................................................................................................	21	19	0.21	4	2	0	2	0
.................................................................................CCTGGTAGCCAAATATGGTGT........................................................	21	19	0.21	4	0	1	3	0
....................................................................................................GCAGATGCAGTTCCGTAAG----TGT................................	22	20	0.20	4	0	0	4	0
............................................................................................AATATGGTGCAGATGCAGTTC.............................................	21	20	0.20	4	1	0	3	0
....................................................................................................GCAGATGCAGTTCCGTAAG----T..................................	20	20	0.20	4	0	0	3	1
.............................................................................................ATATGGTGCAGATGCAGTTCCG...........................................	22	20	0.20	4	0	0	4	0
...............................................................................................ATGGTGCAGATGCAGTTCCG...........................................	20	20	0.20	4	0	0	4	0
.........................................................................................................TGCAGTTCCGTAAG----TGACT..............................	19	20	0.20	4	0	0	4	0
..........................TGC-------ACTAATAACTTGGTTTTT........................................................................................................	21	17	0.18	3	1	0	2	0
..............................................TGGTTTTTACATTTATCTGCA...........................................................................................	21	17	0.18	3	1	0	2	0
..................................................TTTTACATTTATCTGCAATAT.......................................................................................	21	18	0.17	3	0	0	3	0
..................................................................................................................GTAAG----TGACTGTGGTTAATT....................	20	18	0.17	3	2	0	1	0
................................................................................................................CCGTAAG----TGACTGTGGTTAA......................	20	18	0.17	3	1	0	2	0
.......................................................CATTTATCTGCAATATCTACC..................................................................................	21	18	0.17	3	1	0	2	0
.................................................................CAATATCTACCAGAACCCT..........................................................................	19	18	0.17	3	0	0	3	0
......................................................ACATTTATCTGCAATATCTAC...................................................................................	21	18	0.17	3	1	0	2	0
...................................................................................................................TAAG----TGACTGTGGTTAATT....................	19	18	0.17	3	0	0	3	0
.........................................................TTTATCTGCAATATCTACCAG................................................................................	21	18	0.17	3	0	0	3	0
..................................................................................................................GTAAG----TGACTGTGGTTAATTT...................	21	18	0.17	3	0	0	3	0
....................AATTATTGC-------ACTAATAACTTG..............................................................................................................	21	19	0.16	3	2	0	1	0
......................................................................................TAGCCAAATATGGTGCAGATG...................................................	21	19	0.16	3	2	0	1	0
.................................................................................CCTGGTAGCCAAATATGGTG.........................................................	20	19	0.16	3	0	0	3	0
...................................................................................TGGTAGCCAAATATGGTGCAGT.....................................................	22	19	0.16	3	0	0	3	0
...............................................................................................ATGGTGCAGATGCAGTTCCGTT.........................................	22	20	0.15	3	0	0	3	0
.........................................................................................................TGCAGTTCCGTAAG----TGACTGT............................	21	20	0.15	3	0	0	3	0
................................................................................................TGGTGCAGATGCAGTTCCGTA.........................................	21	20	0.15	3	0	0	3	0
..................................................................................................GTGCAGATGCAGTTCCGTAA........................................	20	20	0.15	3	0	0	3	0
...........................................................................................AAATATGGTGCAGATGCAG................................................	19	20	0.15	3	3	0	0	0
..........................................................................................CAAATATGGTGCAGATGCAGTT..............................................	22	20	0.15	3	0	0	3	0
......................................TAATAACTTGGTTTTTACATT...................................................................................................	21	17	0.12	2	1	0	1	0
.........................................TAACTTGGTTTTTACATTTATCTGCAATA........................................................................................	29	17	0.12	2	2	0	0	0
.............................................TTGGTTTTTACATTTATCTGC............................................................................................	21	17	0.12	2	0	0	2	0
.........................................................TTTATCTGCAATATCTACCAGT...............................................................................	22	18	0.11	2	0	0	2	0
.....................................................TACATTTATCTGCAATATCT.....................................................................................	20	18	0.11	2	1	0	1	0
............................................................................................................................GACTGTGGTTAATTTATATGT.............	21	18	0.11	2	0	0	2	0
................................................GTTTTTACATTTATCTGCAAT.........................................................................................	21	18	0.11	2	0	0	2	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAAT.....................	22	18	0.11	2	0	0	2	0
..........................................................TTATCTGCAATATCTACCAGA...............................................................................	21	18	0.11	2	0	0	2	0
............................................................................................................................GACTGTGGTTAATTTATATG..............	20	18	0.11	2	0	0	2	0
.........................TTGC-------ACTAATAACTTGGT............................................................................................................	18	18	0.11	2	0	0	2	0
....TATAGAAATCATTCCTAATTA.....................................................................................................................................	21	19	0.11	2	0	0	2	0
.........................................................................ACCAGAACCCTGGTAGCCAAA................................................................	21	19	0.11	2	1	0	1	0
..................CTAATTATTGC-------ACTAATAACT................................................................................................................	21	19	0.11	2	1	0	1	0
.............................................................................................................GTTCCGTAAG----TGACTGTGG..........................	19	19	0.11	2	1	0	1	0
...............................................................................ACCCTGGTAGCCAAATATG............................................................	19	19	0.11	2	0	0	2	0
..CATATAGAAATCATTCCTAAT.......................................................................................................................................	21	19	0.11	2	0	0	2	0
........................................................................................GCCAAATATGGTGCAGATGCA.................................................	21	19	0.11	2	0	0	2	0
..............................................................................AACCCTGGTAGCCAAATATGGT..........................................................	22	19	0.11	2	0	0	2	0
................................................................................CCCTGGTAGCCAAATATGGTGT........................................................	22	19	0.11	2	0	0	2	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTTT.......................	22	19	0.11	2	0	0	2	0
......................................................................................................AGATGCAGTTCCGTAAG----TGACTT.............................	23	20	0.10	2	0	0	2	0
............................................................................................AATATGGTGCAGATGCAGTT..............................................	20	20	0.10	2	0	0	2	0
...................................................................................................TGCAGATGCAGTTCCGTA.........................................	18	20	0.10	2	0	0	2	0
.................................................................................................GGTGCAGATGCAGTTCCGT..........................................	19	20	0.10	2	0	0	2	0
...................................................................ATATCTACCAGAACCCTGG........................................................................	19	20	0.10	2	2	0	0	0
..................................................................................................GTGCAGATGCAGTTCCGTAAG----T..................................	22	20	0.10	2	0	0	2	0
......................................................................................................AGATGCAGTTCCGTAAG----TGACC..............................	22	20	0.10	2	0	0	2	0
....................................................................................................GCAGATGCAGTTCCGTAA........................................	18	20	0.10	2	0	0	2	0
..............................................................................................TATGGTGCAGATGCAGTTCC............................................	20	20	0.10	2	0	0	2	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGA................................	23	20	0.10	2	0	0	2	0
........................................................................................................ATGCAGTTCCGTAAG----TGACT..............................	20	20	0.10	2	0	0	2	0
............................................CTTGGTTTTTACATTTATCTG.............................................................................................	21	17	0.06	1	0	0	1	0
..........................................................TTATCTGCAATATCTACCAGAACCCTGGT.......................................................................	29	17	0.06	1	1	0	0	0
.....................................CTAATAACTTGGTTTTTACAG....................................................................................................	21	17	0.06	1	1	0	0	0
.............................................TTGGTTTTTACATTTATCTGCA...........................................................................................	22	17	0.06	1	0	0	1	0
......................................TAATAACTTGGTTTTTACA.....................................................................................................	19	17	0.06	1	1	0	0	0
.......................................AATAACTTGGTTTTTACATTT..................................................................................................	21	17	0.06	1	1	0	0	0
.........................................TAACTTGGTTTTTACATTTAT................................................................................................	21	17	0.06	1	0	0	1	0
........................................................................................................................................TTTATATGTTTTAATTTTTTCT	22	17	0.06	1	0	0	1	0
.........................TTGC-------ACTAATAACTTGGTTT..........................................................................................................	20	18	0.06	1	1	0	0	0
.............CATTCCTAATTATTGC-------ACTAATAACT................................................................................................................	26	18	0.06	1	1	0	0	0
...............................................................................................................................TGTGGTTAATTTATATGTT............	19	18	0.06	1	1	0	0	0
................................................................GCAATATCTACCAGAACCCT..........................................................................	20	18	0.06	1	1	0	0	0
.................................................................CAATATCTACCAGAACCCTG.........................................................................	20	18	0.06	1	0	0	1	0
....................................................................................................................AAG----TGACTGTGGTTAATTTA..................	20	18	0.06	1	0	0	0	1
................................................GTTTTTACATTTATCTGCAAG.........................................................................................	21	18	0.06	1	1	0	0	0
................................................................GCAATATCTACCAGAACCCTGG........................................................................	22	18	0.06	1	0	0	1	0
....................................................................................................................AAG----TGACTGTGGTTAATT....................	18	18	0.06	1	0	0	1	0
...............................................GGTTTTTACATTTATCTGCA...........................................................................................	20	18	0.06	1	1	0	0	0
........................ATTGC-------ACTAATAACTTGGT............................................................................................................	19	18	0.06	1	0	0	1	0
...................................................................................................................TAAG----TGACTGTGGTTAAT.....................	18	18	0.06	1	0	0	1	0
....................................................TTACATTTATCTGCAATATC......................................................................................	20	18	0.06	1	0	0	1	0
.............CATTCCTAATTATTGC-------ACTAAT....................................................................................................................	22	18	0.06	1	0	0	1	0
...............................................................................................................................TGTGGTTAATTTATATGTTT...........	20	18	0.06	1	0	0	1	0
...............TTCCTAATTATTGC-------ACTAAT....................................................................................................................	20	18	0.06	1	0	0	1	0
............................................................ATCTGCAATATCTACCAGAAC.............................................................................	21	18	0.06	1	0	0	1	0
......................................................................................................................G----TGACTGTGGTTAATTTATATG..............	22	18	0.06	1	0	0	1	0
.....................................................TACATTTATCTGCAATATCTACCA.................................................................................	24	18	0.06	1	0	0	1	0
...........................................................TATCTGCAATATCTACCAGAA..............................................................................	21	18	0.06	1	1	0	0	0
...................................................................................................................TAAG----TGACTGTGGTTAATTT...................	20	18	0.06	1	0	0	1	0
...............TTCCTAATTATTGC-------ACTAATA...................................................................................................................	21	18	0.06	1	0	0	1	0
....................................................................................................................................TTAATTTATATGTTTTAATTT.....	21	18	0.06	1	0	0	1	0
.......................TATTGC-------ACTAATAACTTGGT............................................................................................................	20	18	0.06	1	0	0	1	0
.....................................................................................................................AG----TGACTGTGGTTAATTTATA................	21	18	0.06	1	0	0	1	0
...................................................................................................................................GTTAATTTATATGTTTTAATT......	21	18	0.06	1	0	0	1	0
..........................................................TTATCTGCAATATCTACCAGAACCCTGG........................................................................	28	18	0.06	1	1	0	0	0
.....................................................................................................................AG----TGACTGTGGTTAATTTAT.................	20	18	0.06	1	1	0	0	0
.........................TTGC-------ACTAATAACTTGGTTTT.........................................................................................................	21	18	0.06	1	0	0	1	0
...............................................................................................................................TGTGGTTAATTTATATGTTTT..........	21	18	0.06	1	1	0	0	0
.....................................................................................GTAGCCAAATATGGTGCAGATG...................................................	22	19	0.05	1	0	0	1	0
............................................................................AGAACCCTGGTAGCCAAATATG............................................................	22	19	0.05	1	0	0	1	0
........................................................................................GCCAAATATGGTGCAGATGCAG................................................	22	19	0.05	1	0	0	1	0
..............................................................................................................TTCCGTAAG----TGACTGTGGT.........................	19	19	0.05	1	1	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTT........................	18	19	0.05	1	0	0	1	0
...............................................................................ACCCTGGTAGCCAAATATGGTG.........................................................	22	19	0.05	1	0	0	1	0
.......AGAAATCATTCCTAATTATTG..................................................................................................................................	21	19	0.05	1	0	0	1	0
...................TAATTATTGC-------ACTAATAACTT...............................................................................................................	21	19	0.05	1	0	0	1	0
......TAGAAATCATTCCTAATTATT...................................................................................................................................	21	19	0.05	1	0	0	1	0
...................................................................ATATCTACCAGAACCCTGGT.......................................................................	20	19	0.05	1	0	0	1	0
................................................................................CCCTGGTAGCCAAATATGGTGA........................................................	22	19	0.05	1	0	0	1	0
.............................................................................GAACCCTGGTAGCCAAATATG............................................................	21	19	0.05	1	1	0	0	0
...............................................................................ACCCTGGTAGCCAAATATGGTGC........................................................	23	19	0.05	1	0	0	1	0
...................................................................ATATCTACCAGAACCCTGGTA......................................................................	21	19	0.05	1	1	0	0	0
............................................................................AGAACCCTGGTAGCCAAAT...............................................................	19	19	0.05	1	1	0	0	0
................TCCTAATTATTGC-------ACTAATAACTTGGC............................................................................................................	27	19	0.05	1	1	0	0	0
..................................................................................CTGGTAGCCAAATATGGTGCAA......................................................	22	19	0.05	1	0	0	1	0
...................................................................................TGGTAGCCAAATATGGTGCA.......................................................	20	19	0.05	1	0	0	1	0
.......................................................................................AGCCAAATATGGTGCAGATGCAGTTCC............................................	27	19	0.05	1	1	0	0	0
..........AATCATTCCTAATTATTGC-------AC........................................................................................................................	21	19	0.05	1	0	0	1	0
........................................................................TACCAGAACCCTGGTAGCCAA.................................................................	21	19	0.05	1	1	0	0	0
..................................................................................CTGGTAGCCAAATATGGTGT........................................................	20	19	0.05	1	0	0	1	0
...............................................................................ACCCTGGTAGCCAAATATGGTGCAGA.....................................................	26	19	0.05	1	1	0	0	0
..............ATTCCTAATTATTGC-------ACTAA.....................................................................................................................	20	19	0.05	1	0	0	1	0
.CCATATAGAAATCATTCCTAAA.......................................................................................................................................	22	19	0.05	1	0	0	1	0
.......................................................................................AGCCAAATATGGTGCAGATG...................................................	20	19	0.05	1	1	0	0	0
..........AATCATTCCTAATTATTGC-------A.........................................................................................................................	20	19	0.05	1	1	0	0	0
..........AATCATTCCTAATTATTGC-------ACT.......................................................................................................................	22	19	0.05	1	0	0	1	0
.................................................................................CCTGGTAGCCAAATATGGTGCATT.....................................................	24	19	0.05	1	0	0	1	0
..............................................................................................................TTCCGTAAG----TGACTGTGG..........................	18	19	0.05	1	0	0	1	0
.............CATTCCTAATTATTGC-------ACTA......................................................................................................................	20	19	0.05	1	0	1	0	0
......................................................................................TAGCCAAATATGGTGCAGATGCAGTT..............................................	26	19	0.05	1	0	0	0	1
.................................................................................CCTGGTAGCCAAATATGGTGTT.......................................................	22	19	0.05	1	0	0	1	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGT.........................	20	19	0.05	1	0	0	1	0
................................................................................CCCTGGTAGCCAAATATGGTG.........................................................	21	19	0.05	1	0	0	1	0
..................................................................................................GTGCAGATGCAGTTCCGT..........................................	18	20	0.05	1	0	0	1	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----A..................................	21	20	0.05	1	0	0	1	0
...........................................................................................................CAGTTCCGTAAG----TGACTGTG...........................	20	20	0.05	1	1	0	0	0
...............................................................................................ATGGTGCAGATGCAGTTCCGC..........................................	21	20	0.05	1	0	0	1	0

droSim2

TCCATATAGAAATCATTCCTAATTATTGC-------ACTAATAACTTGGTTTTTACATTTATCTGCAATATCTACCAGAACCCTGGTAGCCAAATATGGTGCAGATGCAGTTCCGTAAG----TGACTGTGGTTAATTTATATGTTTTAATTTTTTCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTA..................	26	1	38975.00	38975	20	175	14552	62	36	0	8934	3281	9746	1967	200	2	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTATA................	28	1	3575.00	3575	0	9	500	10	0	0	1374	716	713	246	7	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTT...................	25	1	3262.00	3262	2	7	563	18	45	0	1002	353	1044	217	11	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATT....................	24	1	1970.00	1970	1	11	796	16	45	9	305	81	542	156	8	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATTTA..................	25	1	1460.00	1460	0	0	350	6	0	0	281	42	688	73	20	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTA.......................	21	1	545.00	545	9	4	356	0	9	0	17	12	99	32	3	4	0	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATCTGCAA..........................................................................................	27	1	524.00	524	0	0	0	6	10	0	93	38	216	152	1	0	5	3	0	0	0
.........................................TAACTTGGTTTTTACATTTATCTGCAATA........................................................................................	29	1	421.00	421	0	0	0	4	0	0	115	125	120	56	0	0	1	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATTTATA................	27	1	353.00	353	0	0	24	0	0	0	74	16	201	29	2	0	7	0	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTTAATTTATA................	26	1	282.00	282	0	0	38	0	0	0	10	3	26	4	1	0	199	1	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTTAATTTA..................	24	1	252.00	252	0	0	179	1	0	0	12	10	17	2	2	1	26	2	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGACTGT............................	27	1	200.00	200	0	0	0	4	0	0	3	0	5	0	182	5	1	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTAT.................	27	1	197.00	197	0	0	8	0	0	0	87	39	39	23	1	0	0	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATCTGC............................................................................................	25	1	194.00	194	0	0	1	37	60	0	17	6	53	17	1	0	2	0	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTTAATTTAT.................	25	1	133.00	133	0	0	0	0	0	0	1	1	4	0	0	0	127	0	0	0	0
.............................................TTGGTTTTTACATTTATCTGCAATA........................................................................................	25	1	130.00	130	0	0	0	0	0	10	20	2	85	13	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATTT...................	24	1	114.00	114	0	0	4	4	0	0	27	6	60	13	0	0	0	0	0	0	0
.................................................................................................................CGTAAG----TGACTGTGGTTAATT....................	21	1	105.00	105	1	1	77	0	0	9	2	0	4	11	0	0	0	0	0	0	0
....................................................TTACATTTATCTGCAATATCTACCAGA...............................................................................	27	1	101.00	101	0	0	0	0	0	0	49	0	50	2	0	0	0	0	0	0	0
...............................................................................................................................TGTGGTTAATTTATATGTTTTAAT.......	24	1	99.00	99	0	0	0	2	0	0	17	5	62	13	0	0	0	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATCTGCA...........................................................................................	26	1	94.00	94	0	0	0	9	0	0	16	14	33	16	1	0	5	0	0	0	0
...........................................................................................................................TGACTGTGGTTAATTTATATGTTTTAATT......	29	1	93.00	93	0	0	0	0	0	0	24	4	57	8	0	0	0	0	0	0	0
.......................................................................................................GATGCAGTTCCGTAAG----TGACTGT............................	23	1	93.00	93	0	0	0	0	0	0	0	0	0	0	93	0	0	0	0	0	0
.....................................................TACATTTATCTGCAATATCTACCAGA...............................................................................	26	1	88.00	88	0	0	0	0	0	0	36	4	40	8	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTT..................	26	1	82.00	82	0	0	8	0	0	0	43	13	16	2	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAAT.....................	23	1	80.00	80	0	0	20	1	0	0	11	11	27	7	3	0	0	0	0	0	0
...............................................................................................................................TGTGGTTAATTTATATGTTTTAATT......	25	1	74.00	74	0	0	0	0	0	0	12	7	49	6	0	0	0	0	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTT........................	21	1	73.00	73	1	0	51	0	0	0	2	0	10	3	0	6	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAA......................	22	1	66.00	66	0	0	8	0	36	0	4	3	11	2	2	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGT.........................	19	1	63.00	63	0	0	0	0	27	0	4	2	4	3	23	0	0	0	0	0	0
...............................................................TGCAATATCTACCAGAACCCT..........................................................................	21	1	62.00	62	1	1	46	0	0	10	0	0	0	2	0	2	0	0	0	0	0
............................................................................................................AGTTCCGTAAG----TGACTGTGGTTAATT....................	26	1	61.00	61	0	0	2	0	0	0	7	3	31	12	1	0	5	0	0	0	0
....................................................TTACATTTATCTGCAATATCTACCAGAA..............................................................................	28	1	59.00	59	0	0	0	0	0	0	18	0	37	4	0	0	0	0	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTTAATTTA..................	27	1	58.00	58	0	0	13	0	0	0	13	8	17	7	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTT........................	20	1	52.00	52	0	0	2	0	9	0	6	0	10	7	17	1	0	0	0	0	0
...........................................................................CAGAACCCTGGTAGCCAAATATGGTGCA.......................................................	28	1	48.00	48	0	0	0	0	0	0	19	7	15	1	1	0	5	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGACTG.............................	26	1	48.00	48	0	0	2	1	0	0	1	0	1	1	36	6	0	0	0	0	0
......................................................................................TAGCCAAATATGGTGCAGATGCAGT...............................................	25	1	47.00	47	0	0	2	0	0	0	2	1	7	1	34	0	0	0	0	0	0
......................................................................................................AGATGCAGTTCCGTAAG----TGAC...............................	21	1	45.00	45	0	0	16	0	0	0	0	0	0	0	1	28	0	0	0	0	0
..............................................TGGTTTTTACATTTATCTGCAATA........................................................................................	24	1	42.00	42	0	0	0	0	0	0	9	0	32	1	0	0	0	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATC...............................................................................................	22	1	41.00	41	0	0	0	0	40	0	0	0	0	0	1	0	0	0	0	0	0
...................................................TTTACATTTATCTGCAATATCTACCAGA...............................................................................	28	1	41.00	41	0	0	0	0	0	0	15	2	19	3	0	0	2	0	0	0	0
.....................................................................................................CAGATGCAGTTCCGTAAG----TGA................................	21	1	41.00	41	0	0	0	0	0	0	0	0	3	3	0	35	0	0	0	0	0
........................................................................TACCAGAACCCTGGTAGCCAAATATGG...........................................................	27	1	40.00	40	0	0	1	0	0	0	4	0	21	14	0	0	0	0	0	0	0
..................................................TTTTACATTTATCTGCAATATCTACCAGA...............................................................................	29	1	39.00	39	0	0	0	1	0	0	15	4	14	5	0	0	0	0	0	0	0
........................................................................................................ATGCAGTTCCGTAAG----TGACTG.............................	21	1	38.00	38	1	1	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TATCTGCAATATCTACCAGAACCCTGG........................................................................	27	1	37.00	37	0	0	0	1	0	0	18	4	11	2	0	0	1	0	0	0	0
..............................................................CTGCAATATCTACCAGAACCC...........................................................................	21	1	36.00	36	0	0	6	0	0	30	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTTA.......................	22	1	35.00	35	1	0	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTA...................	25	1	35.00	35	0	0	18	0	0	0	4	1	11	1	0	0	0	0	0	0	0
..........................................AACTTGGTTTTTACATTTATCTGCAATA........................................................................................	28	1	33.00	33	0	0	0	0	0	0	19	0	12	1	0	0	1	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTTAATTTATATGTT............	27	1	32.00	32	0	0	0	0	0	0	8	1	18	3	0	0	2	0	0	0	0
.............................................................TCTGCAATATCTACCAGAACCCTGG........................................................................	25	1	32.00	32	0	0	7	1	0	0	5	1	14	3	0	0	1	0	0	0	0
.........................................TAACTTGGTTTTTACATTTAT................................................................................................	21	1	30.00	30	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TACATTTATCTGCAATATCTACCAGAA..............................................................................	27	1	29.00	29	0	0	0	2	0	0	4	0	18	5	0	0	0	0	0	0	0
...............TTCCTAATTATTGC-------ACTAATAACT................................................................................................................	24	2	28.50	57	0	0	0	0	0	0	8	1	37	11	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTAA.................	27	1	28.00	28	0	0	13	0	0	0	1	0	10	2	2	0	0	0	0	0	0
...........................................................................................................................TGACTGTGGTTAATTTATATG..............	21	1	28.00	28	0	0	0	0	0	0	0	0	16	11	0	1	0	0	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTTAAT.....................	21	1	28.00	28	0	0	4	0	9	9	0	0	0	1	0	2	3	0	0	0	0
....................................................................TATCTACCAGAACCCTGGTAGCCAAA................................................................	26	1	28.00	28	0	0	0	0	20	0	1	1	2	2	2	0	0	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTTAATTTATATGTTT...........	28	1	27.00	27	0	0	0	0	0	0	9	3	12	3	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATGCAGT...............................................	28	1	27.00	27	0	0	0	0	0	0	5	0	9	2	9	0	2	0	0	0	0
.................................................................................................................CGTAAG----TGACTGTGGTTAATTTATA................	25	1	27.00	27	0	0	4	0	0	0	3	0	15	1	0	0	4	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATCTGCAAA.........................................................................................	28	1	27.00	27	0	0	0	0	0	0	4	1	14	8	0	0	0	0	0	0	0
............................................CTTGGTTTTTACATTTATCTG.............................................................................................	21	1	26.00	26	0	1	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTG...........................	17	1	26.00	26	0	0	0	0	0	0	0	1	0	1	24	0	0	0	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTTAATTTATAA...............	27	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	26	0	0	0	0
...............................................................................ACCCTGGTAGCCAAATATGGTGCAGA.....................................................	26	1	24.00	24	0	0	0	0	0	0	2	1	7	3	11	0	0	0	0	0	0
............................................................................................................AGTTCCGTAAG----TGACTGTGGTTAATTTA..................	28	1	24.00	24	0	0	1	0	0	0	3	0	16	4	0	0	0	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATCT..............................................................................................	23	1	24.00	24	0	0	0	0	20	0	0	0	0	0	1	0	3	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTAC.................	27	1	23.00	23	0	0	5	0	0	0	4	3	8	3	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATT....................	23	1	23.00	23	0	0	1	0	0	0	1	1	13	4	1	0	1	1	0	0	0
............................................................ATCTGCAATATCTACCAGAACCCTGG........................................................................	26	1	23.00	23	0	0	0	0	0	0	3	2	17	1	0	0	0	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTTAATTTA..................	21	1	23.00	23	0	0	2	0	0	0	0	0	13	7	0	1	0	0	0	0	0
............TCATTCCTAATTATTGC-------ACTAATAACT................................................................................................................	27	2	23.00	46	0	0	0	3	0	0	9	4	25	4	0	0	1	0	0	0	0
..................................................................................................GTGCAGATGCAGTTCCGTAAG----...................................	21	1	22.00	22	0	0	0	0	0	0	0	0	0	0	6	16	0	0	0	0	0
...........................................................................................................................TGACTGTGGTTAATTTATATGTTTTAAT.......	28	1	22.00	22	0	0	0	0	0	0	3	1	13	1	0	0	4	0	0	0	0
.........................................................................................................TGCAGTTCCGTAAG----TGACTGTG...........................	22	1	22.00	22	0	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATCTGCAAT.........................................................................................	28	1	21.00	21	0	0	0	3	0	0	2	4	3	7	1	0	1	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----T..................................	21	1	21.00	21	0	0	2	0	0	0	2	0	2	1	3	11	0	0	0	0	0
.....................................CTAATAACTTGGTTTTTACAT....................................................................................................	21	1	20.00	20	0	0	0	0	10	10	0	0	0	0	0	0	0	0	0	0	0
.............................................TTGGTTTTTACATTTATCTGCA...........................................................................................	22	1	20.00	20	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGACT..............................	25	1	20.00	20	0	0	1	0	0	0	1	1	3	1	13	0	0	0	0	0	0
.................................................TTTTTACATTTATCTGCAATA........................................................................................	21	1	20.00	20	0	0	0	0	0	10	0	1	5	4	0	0	0	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGA................................	23	1	18.00	18	0	0	1	0	0	0	3	0	2	0	11	0	1	0	0	0	0
...........................................................................................................................TGACTGTGGTTAATTTATATGTTTTAA........	27	1	17.00	17	0	0	0	0	0	0	3	0	7	3	0	0	4	0	0	0	0
...........................................................................................................................TGACTGTGGTTAATTTATATGTTT...........	24	1	17.00	17	0	0	1	0	0	0	3	0	11	2	0	0	0	0	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTTAATTTAA.................	25	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTTAATTT...................	23	1	16.00	16	0	0	0	0	0	0	2	0	4	2	0	0	7	1	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTTAATTT...................	26	1	16.00	16	0	1	10	0	0	0	1	1	1	1	1	0	0	0	0	0	0
................................................................GCAATATCTACCAGAACCCTG.........................................................................	21	1	15.00	15	0	0	0	0	10	0	0	0	2	1	0	2	0	0	0	0	0
........................................................................................................ATGCAGTTCCGTAAG----TGAC...............................	19	1	15.00	15	1	0	5	0	0	9	0	0	0	0	0	0	0	0	0	0	0
...........................................................................CAGAACCCTGGTAGCCAAATA..............................................................	21	1	15.00	15	0	0	5	0	10	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTTAATTTATATGT.............	26	1	15.00	15	0	0	0	0	0	0	3	2	8	2	0	0	0	0	0	0	0
..................................................................................................................GTAAG----TGACTGTGGTTAATTTA..................	22	1	15.00	15	0	0	10	0	0	0	1	0	0	1	3	0	0	0	0	0	0
.........................................TAACTTGGTTTTTACATTTATCTG.............................................................................................	24	1	14.00	14	0	0	3	5	0	0	0	0	0	0	0	0	6	0	0	0	0
..........................................AACTTGGTTTTTACATTTATCTGC............................................................................................	24	1	14.00	14	0	0	0	1	10	0	1	0	1	0	0	0	1	0	0	0	0
...........................................................................................................................TGACTGTGGTTAATTTATATGTTTTA.........	26	1	14.00	14	0	0	0	0	0	0	0	0	7	0	0	0	5	2	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATTTAT.................	26	1	14.00	14	0	0	0	0	0	0	1	0	9	1	1	1	1	0	0	0	0
.....................................................................................................CAGATGCAGTTCCGTAAG----TG.................................	20	1	14.00	14	0	0	0	0	9	0	0	0	0	0	0	5	0	0	0	0	0
...................TAATTATTGC-------ACTAATAACTTGGT............................................................................................................	24	1	14.00	14	0	0	0	0	0	0	6	0	6	2	0	0	0	0	0	0	0
....................................................................................................GCAGATGCAGTTCCGTAAG----TG.................................	21	1	14.00	14	0	0	0	0	0	9	0	0	0	0	1	4	0	0	0	0	0
.................................................................CAATATCTACCAGAACCCT..........................................................................	19	1	13.00	13	1	0	2	0	0	10	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TGCAGTTCCGTAAG----TGACT..............................	19	1	13.00	13	0	0	1	0	0	0	0	0	0	0	12	0	0	0	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTTAATT....................	25	1	13.00	13	0	0	5	0	0	0	2	0	6	0	0	0	0	0	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGT.........................	20	1	13.00	13	0	0	0	0	9	0	0	0	0	0	4	0	0	0	0	0	0
.....................................................................................................................AG----TGACTGTGGTTAATTTATATGTTT...........	26	1	13.00	13	0	0	0	0	0	0	1	1	10	1	0	0	0	0	0	0	0
.....................................................................................................CAGATGCAGTTCCGTAAG----TGAC...............................	22	1	13.00	13	0	0	2	0	0	9	0	0	0	0	0	2	0	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TGAC...............................	24	1	13.00	13	0	0	4	0	0	0	0	0	1	0	7	0	0	1	0	0	0
.....................................................................................................................AG----TGACTGTGGTTAATTTATATGTT............	25	1	13.00	13	0	0	0	0	0	0	3	1	6	1	1	0	1	0	0	0	0
.............CATTCCTAATTATTGC-------ACTAA.....................................................................................................................	21	2	13.00	26	0	0	0	0	8	16	0	0	0	2	0	0	0	0	0	0	0
.......................................................................................................GATGCAGTTCCGTAAG----TGACT..............................	21	1	12.00	12	0	0	8	0	0	0	0	0	0	0	2	2	0	0	0	0	0
..................................................................................................................GTAAG----TGACTGTGGTTAATT....................	20	1	12.00	12	0	0	9	0	0	0	0	0	0	1	2	0	0	0	0	0	0
.........................................................TTTATCTGCAATATCTACCAGAACCC...........................................................................	26	1	12.00	12	0	0	0	2	10	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TATGGTGCAGATGCAGTTCCG...........................................	21	1	12.00	12	0	0	2	0	0	0	0	0	0	0	1	9	0	0	0	0	0
...........................................................TATCTGCAATATCTACCAGAACCCTGGT.......................................................................	28	1	12.00	12	0	0	0	2	0	0	2	2	5	1	0	0	0	0	0	0	0
......................................................................................................AGATGCAGTTCCGTAAG----TGACT..............................	22	1	12.00	12	0	0	9	0	0	0	0	0	0	0	0	3	0	0	0	0	0
.................................................................................................................CGTAAG----TGACTGTGGTTAATTTA..................	23	1	12.00	12	0	0	2	1	0	0	1	2	2	1	2	0	1	0	0	0	0
.................................................................CAATATCTACCAGAACCCTGG........................................................................	21	1	12.00	12	0	0	6	0	0	0	1	0	1	1	0	3	0	0	0	0	0
.......................................................................................AGCCAAATATGGTGCAGATGCAGT...............................................	24	1	12.00	12	0	0	0	0	0	0	1	0	1	0	10	0	0	0	0	0	0
..............................................................................................TATGGTGCAGATGCAGTT..............................................	18	1	12.00	12	0	0	0	0	0	9	0	0	0	0	3	0	0	0	0	0	0
...................................................TTTACATTTATCTGCAATATCTACCAGAA..............................................................................	29	1	11.00	11	0	0	0	0	0	0	1	0	9	1	0	0	0	0	0	0	0
..............................................................................................................................CTGTGGTTAATTTATATGTTT...........	21	1	11.00	11	0	0	0	0	0	9	0	0	0	1	1	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGG..........................	18	1	11.00	11	0	0	0	0	0	0	0	0	2	0	9	0	0	0	0	0	0
....................................................TTACATTTATCTGCAATATCT.....................................................................................	21	1	11.00	11	0	0	0	0	0	10	0	0	0	0	0	1	0	0	0	0	0
..................................................................AATATCTACCAGAACCCTGGTAGCCAAA................................................................	28	1	11.00	11	0	0	0	0	10	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................AGTTCCGTAAG----TGACTGTGGTTAAT.....................	25	1	11.00	11	0	0	0	0	0	0	1	0	0	0	0	0	10	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTATT................	28	1	11.00	11	0	0	1	0	0	0	3	4	2	1	0	0	0	0	0	0	0
..............................................................................................TATGGTGCAGATGCAGT...............................................	17	1	11.00	11	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATGC..................................................	25	1	11.00	11	0	0	0	0	0	0	0	0	1	0	9	1	0	0	0	0	0
...............................................................TGCAATATCTACCAGAACCCTGG........................................................................	23	1	11.00	11	0	0	0	0	0	0	6	0	5	0	0	0	0	0	0	0	0
.............................................................TCTGCAATATCTACCAGAACCCTGGT.......................................................................	26	1	11.00	11	0	0	0	0	0	0	1	0	9	1	0	0	0	0	0	0	0
.........................................................................................................TGCAGTTCCGTAAG----TGACTG.............................	20	1	11.00	11	1	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGC-------ACTAATAACTTGGTTTTTACATT...................................................................................................	26	1	11.00	11	0	0	0	1	0	0	2	1	6	1	0	0	0	0	0	0	0
............................................................................................................AGTTCCGTAAG----TGACTGTGGT.........................	21	1	10.00	10	0	0	2	1	0	0	0	0	1	1	1	4	0	0	0	0	0
......................TTATTGC-------ACTAATAACTTGGTTTTTA.......................................................................................................	26	1	10.00	10	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0
......................................................................................................AGATGCAGTTCCGTAAG----TGACTGT............................	24	1	10.00	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0
.....................................................................................GTAGCCAAATATGGTGCAGAT....................................................	21	1	10.00	10	0	0	0	0	9	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................GTAGCCAAATATGGTGCAGA.....................................................	20	1	10.00	10	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----TG.................................	22	1	10.00	10	0	0	0	0	0	0	0	0	0	0	6	4	0	0	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTTAATT....................	22	1	10.00	10	0	0	5	0	0	0	0	0	0	0	0	1	4	0	0	0	0
.........................................TAACTTGGTTTTTACATTT..................................................................................................	19	1	10.00	10	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TGCAATATCTACCAGAACCCTGGT.......................................................................	24	1	9.00	9	0	0	0	1	0	0	0	0	8	0	0	0	0	0	0	0	0
..........................................................TTATCTGCAATATCTACCAGAACCCTGG........................................................................	28	1	9.00	9	0	0	0	0	0	0	7	0	2	0	0	0	0	0	0	0	0
.........................................................................................................TGCAGTTCCGTAAG----TGACTGT............................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0
....................AATTATTGC-------ACTAATAACTTGG.............................................................................................................	22	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TAGCCAAATATGGTGCAGAT....................................................	20	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TGGTGCAGATGCAGTTCCGTAA........................................	22	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATA....................	24	1	9.00	9	0	0	7	0	0	0	0	0	0	2	0	0	0	0	0	0	0
............................................................................................................................GACTGTGGTTAATTTA..................	16	1	9.00	9	0	0	0	0	0	0	2	0	0	1	6	0	0	0	0	0	0
.................................................................................................................CGTAAG----TGACTGTGGTTA.......................	18	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0
.......................................................CATTTATCTGCAATATCTACC..................................................................................	21	1	9.00	9	0	0	8	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................GGTTTTTACATTTATCTGCAA..........................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	3	6	0	0	0	0	0	0	0
..................................................................................................................GTAAG----TGACTGTGGTTAAT.....................	19	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATG...................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	2	0	6	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATTTT..................	25	1	8.00	8	0	0	0	0	0	0	3	1	4	0	0	0	0	0	0	0	0
...........................................ACTTGGTTTTTACATTTATCTGCAATA........................................................................................	27	1	8.00	8	0	0	0	0	0	0	2	0	6	0	0	0	0	0	0	0	0
..................................................................................CTGGTAGCCAAATATGGTGCA.......................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	2	2	0	4	0	0	0	0	0
.........................TTGC-------ACTAATAACTTGGTTTTTACA.....................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	5	3	0	0	0	0	0	0	0
.........................TTGC-------ACTAATAACTTGGTTTTTACATT...................................................................................................	27	1	8.00	8	0	0	0	0	0	0	0	0	7	1	0	0	0	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTTAATT....................	19	1	8.00	8	0	0	7	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTC..................	26	1	8.00	8	0	0	0	0	0	0	0	0	5	3	0	0	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATGCAG................................................	27	1	8.00	8	0	0	0	0	0	0	0	0	5	0	3	0	0	0	0	0	0
.................................................................................CCTGGTAGCCAAATATGGTGC........................................................	21	1	7.00	7	0	0	2	0	0	0	0	0	0	1	0	4	0	0	0	0	0
...........................................................................................................................TGACTGTGGTTAATTTATATGTTTTAAA.......	28	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0
................................................................................................TGGTGCAGATGCAGTTCCGTAAG----TGAC...............................	27	1	7.00	7	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGTGGTTAATTTG..................	26	1	7.00	7	0	0	3	0	0	0	1	0	3	0	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTA.......................	20	1	7.00	7	0	0	0	0	0	0	0	0	0	4	2	0	1	0	0	0	0
...................................................................................................TGCAGATGCAGTTCCGTAAG----...................................	20	1	7.00	7	0	0	0	0	0	0	0	0	2	1	4	0	0	0	0	0	0
..............................................TGGTTTTTACATTTATCTGCA...........................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0
..........................................AACTTGGTTTTTACATTTATCTGCAA..........................................................................................	26	1	7.00	7	0	0	0	0	0	0	3	0	3	1	0	0	0	0	0	0	0
..................................................TTTTACATTTATCTGCAATATCTACCAGAA..............................................................................	30	1	7.00	7	0	0	0	0	0	0	1	2	4	0	0	0	0	0	0	0	0
............................................CTTGGTTTTTACATTTATCTGCAATA........................................................................................	26	1	7.00	7	0	0	0	0	0	0	2	0	3	2	0	0	0	0	0	0	0
................................................................................................................CCGTAAG----TGACTGTGGTTAATTTATAT...............	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0
......TAGAAATCATTCCTAATTATTGC-------ACT.......................................................................................................................	26	2	6.50	13	0	0	0	0	0	0	1	3	2	7	0	0	0	0	0	0	0
.............................................................TCTGCAATATCTACCAGAACCCTGGTA......................................................................	27	1	6.00	6	0	0	0	0	0	0	0	0	3	3	0	0	0	0	0	0	0
................................................................................................TGGTGCAGATGCAGTTCCGTAAG----TG.................................	25	1	6.00	6	0	0	0	0	0	0	0	0	1	0	2	0	3	0	0	0	0
..............................................................................................TATGGTGCAGATGCAGTTCCGTAAG----...................................	25	1	6.00	6	0	0	0	2	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................AGATGCAGTTCCGTAAG----TGA................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0
..........................................................................................................GCAGTTCCGTAAG----TGACTGTG...........................	21	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TCCTAATTATTGC-------ACTAATAACT................................................................................................................	23	2	6.00	12	0	0	0	0	0	0	0	1	6	5	0	0	0	0	0	0	0
......................TTATTGC-------ACTAATAACTTGGTTTTTACA.....................................................................................................	28	1	6.00	6	0	0	0	1	0	0	1	0	3	1	0	0	0	0	0	0	0
............TCATTCCTAATTATTGC-------ACTA......................................................................................................................	21	2	5.50	11	0	0	0	0	8	0	1	0	1	0	0	1	0	0	0	0	0
...................TAATTATTGC-------ACTAATAACTTGGTT...........................................................................................................	25	1	5.00	5	0	0	0	2	0	0	0	0	2	1	0	0	0	0	0	0	0
......................TTATTGC-------ACTAATAACTTGGT............................................................................................................	21	1	5.00	5	0	0	1	0	0	0	1	0	0	2	0	1	0	0	0	0	0
...................................................................................TGGTAGCCAAATATGGTGCAGATGCAGA...............................................	28	1	5.00	5	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0
..............................................................................................................TTCCGTAAG----TGACTGT............................	16	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
....................................................................................................GCAGATGCAGTTCCGTAAG----TGA................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTTAAA.....................	24	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGTGGTTT.......................	22	1	5.00	5	0	0	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTTAATTTAT.................	22	1	5.00	5	0	0	1	0	0	0	2	0	0	2	0	0	0	0	0	0	0
........................................................................TACCAGAACCCTGGTAGCCAAATA..............................................................	24	1	5.00	5	0	0	0	1	0	0	2	0	0	1	0	0	1	0	0	0	0
..........................................................................................CAAATATGGTGCAGATGCAGT...............................................	21	1	5.00	5	0	0	1	0	0	0	0	0	0	0	2	2	0	0	0	0	0
.............................................................................................................GTTCCGTAAG----TGACTGT............................	17	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..................................................................................................................GTAAG----TGACTGTGGTTAATTT...................	21	1	5.00	5	0	0	0	0	0	0	0	0	1	3	1	0	0	0	0	0	0
.............................................................TCTGCAATATCTACCAGAACC............................................................................	21	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................GTGGTTAATTTATATGTTTTA.........	21	1	5.00	5	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0
...........................................................................CAGAACCCTGGTAGCCAAATATGGTGCAGA.....................................................	30	1	5.00	5	0	0	0	0	0	0	3	1	1	0	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAATTTAA.................	26	1	5.00	5	0	0	0	0	0	0	0	0	2	0	1	0	2	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTTAATTTATATG..............	25	1	5.00	5	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0
.............................................................TCTGCAATATCTACCAGAACCCTGGTAGC....................................................................	29	1	5.00	5	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0
..CATATAGAAATCATTCCTAAT.......................................................................................................................................	21	2	5.00	10	0	0	0	0	0	8	0	0	0	0	0	2	0	0	0	0	0
....................................................................................................GCAGATGCAGTTCCGTAAG----...................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0
............................................................................................................AGTTCCGTAAG----TGACTGTGGTTAATTT...................	27	1	5.00	5	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAA......................	21	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................CAGAACCCTGGTAGCCAAATATGGTG.........................................................	26	1	5.00	5	0	0	0	0	0	0	1	1	1	0	1	0	1	0	0	0	0
....................AATTATTGC-------ACTAATAAC.................................................................................................................	18	2	4.50	9	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0
..............ATTCCTAATTATTGC-------ACTAA.....................................................................................................................	20	2	4.50	9	0	0	1	0	8	0	0	0	0	0	0	0	0	0	0	0	0
...................TAATTATTGC-------ACTAATAACTTGGTTTT.........................................................................................................	27	1	4.00	4	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0
..............................................TGGTTTTTACATTTATCTGCAA..........................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
.CCATATAGAAATCATTCCTAATTA.....................................................................................................................................	24	2	4.00	8	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
.............CATTCCTAATTATTGC-------ACTAATAACT................................................................................................................	26	2	4.00	8	0	0	0	0	0	0	2	0	5	1	0	0	0	0	0	0	0
...............................................................................................................TCCGTAAG----TGACTGTGGTTAAT.....................	22	1	4.00	4	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................AG----TGACTGTGGTTAATTTATA................	21	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATAGAAATCATTCCTAATT......................................................................................................................................	19	2	4.00	8	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................GTGCAGATGCAGTTCCGTAAG----T..................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0
.................................................................................................................CGTAAG----TGACTGTGGTTAAT.....................	20	1	4.00	4	0	0	2	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..............................................TGGTTTTTACATTTATCTGCAATATC......................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0
...........................................ACTTGGTTTTTACATTTATCTGCAA..........................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0

dm3

TCCATATAGAAATCATTCCTAATTATTGC-------ACTAATAACTTGGTTTTTACATTTATCTGCAATATCTAGCAGAACCCTGGTAGCCAAATATGGTGCAGATGGAGTTCCGTAAG----TGACTGTGGTTAATTTATATTTTTTAATTTTTTTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................CAGATGGAGTTCCGTAAG----TGA................................	21	3	19.00	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	11	0	6	0	0	0	1	2	1	2	0	0	0	0	0	1	0	0	2	1	5	11	6	0
..............................................................................................TATGGTGCAGATGGAGTTCCG...........................................	21	3	13.67	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	1	0	0	0	1	3	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	15	3	0
..........................................................................................CAAATATGGTGCAGATGGAGT...............................................	21	3	10.00	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	0	0	0	2	1	0	0	0	0	0	0	0	0	1	0	1	1	3	8	2	0
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...........................................................................................AAATATGGTGCAGATGGAGTTC.............................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TAGCCAAATATGGTGCAGATGG..................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AAATATGGTGCAGATGGAGTTT.............................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................TACATTTATCTGCAATATCTAGCA.................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TTTACATTTATCTGCAATATCTAGCA.................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TGCAATATCTAGCAGAACCCTGGT.......................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................GCCAAATATGGTGCAGATGGA.................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GCAGAACCCTGGTAGCCAAATATGGTG.........................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TTTATCTGCAATATCTAGCAGAACCCTGG........................................................................	29	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

TCCATATAAAAATCATTCCTAATTATCTC-------ACTTACATCTTTGTTTTTGCATTTATCAGCAATATCTACTAGAACTCTAGTAGCTAAATATGGTGCAGATGCTGTACCATATG----TGACTGTTGTCAATTTATAATTTTTAAT-TTTTCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCATATAAAAATCACTCCTAATTATCTC-------ACTTACATCTTTGTTTTTGCATTTATCAGCAATATCTACTTGAACTCTAGTAGCTAAATATGGTGCAGATGCAGAACCATATG----TGACTGTTGTCAATTTATATTTTTTAATTTTGTCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCCATATAGAAATCATTCCTAATTATTTC-------ACTCAAATATTTATTTTTACATTTATCAGCAATATCTACCAGAACTCTGGTAGCTAAATATGGTGCGGATGCAGTACCATATG----TGACTGTTGTCAATTTATAATTTTTTAT-TTTTCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCCATATAGAAATCATTCCTAATTATTTC-------ACTCAAATATTTATTTTTACATTTATCAGCAATATCTACCAGAACTCTGGTAGCTAAATATGGTGCGGATGCAGTACCATATG----TGACTGTTGTCAATTTATAATTTTT-ATTTTTTCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCCATATAGAAATCATTCCTAATTATTTC-------ACTTAAGGTTTTGTTTTGGCATTTATCTGCAATATCTACCTAAACTCTTGTAGCTAGATATGGTGCAGATGCAGTACAGTAAG----TAACTGTTGTTAACTTATAATTTTTAATTTTTTGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCCATATAGAAATCGTTTATAATCACATC-------TTTAATTGACTGATCCTGACATCGATTTCCTATCTCAGCTAACACCCTGGTTGCTAAATACGGAGCTGATGCCGTACCATATG----TAACTGTGGTTAGCTTAAAATCTTTTATTTTGTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCCATATAGAAATCATTCCTAATTATTTC-------ACAGATTTTTTGGTTTTCACATTTTTCTGCAATATCTACCAAGACTCTGGTAGCCAAATATGGTGCAGATGCAGTACCGTAAG----TGACTGTTGTCAATTTGTAATTTTTAATTTTTTCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCCATATAAAAATCATTTTTTATTATTTC-------ACCAATCATTTTGTTTTCACAATTTTCACCCACATCTGCTAATACTCTAGTTGCTAAATATGGGGCGGAAGCGGTACCATAAG----TAACCGTAGTTAGTTTGTAGGTTTTAACCTTTTTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................TTGTTTTCACAATTTTCACCCACATC......................................................................................	26	7	0.14	1	0	1	0	0	0	0
...........................................................................TAATACTCTAGTTGCTAAATATGG...........................................................	24	15	0.13	2	2	0	0	0	0	0
..............................................................................TACTCTAGTTGCTAAATATGGG..........................................................	22	15	0.13	2	2	0	0	0	0	0
................................................................CCCACATCTGCTAATACTCTAGTTGCT...................................................................	27	8	0.13	1	0	1	0	0	0	0
...........................................................TTTCACCCACATCTGCTAATACTC...........................................................................	24	8	0.13	1	1	0	0	0	0	0
.............................................................TCACCCACATCTGCTAATACTCTAGT.......................................................................	26	8	0.13	1	1	0	0	0	0	0
......................................................................................TTGCTAAATATGGGGCGGAAGCGG................................................	24	10	0.10	1	1	0	0	0	0	0
...........................................................................................AAATATGGGGCGGAAGCGGTACC............................................	23	11	0.09	1	0	1	0	0	0	0
...................................................................................TAGTTGCTAAATATGGGGCGG......................................................	21	13	0.08	1	0	0	0	0	1	0
................................................................................CTCTAGTTGCTAAATATGGGG.........................................................	21	14	0.07	1	1	0	0	0	0	0
...........................................................................TAATACTCTAGTTGCTAAATATGGG..........................................................	25	15	0.07	1	1	0	0	0	0	0

droBip1

TCCATATAAAAATCATTTTTTATTATTTC-------CCCGATCATTTTGTTTTTGCAATTTTCACCTACATCTGCCAATACTCTGGTTGCTAAATATGGGGCGGAAGCGGTACCATAAG----TTACAGTAGTTAATTTGTAGGTTTTTATTTTTGTT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCCATATAAAAATCATTCTTTATGATTTC-------CCTAATTGCTTGATTTTTGCAATTATCTGCTATTGCAACAAGCACCCTGGTTGCTAAGTAGGGTGCTGAAGCTGTACCGTACG----TAACGGTTGTAAGTTTATAATCTTTTAACTTTTCG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................TGATTTC-------CCTAATTGCTTGATTTT.........................................................................................................	24	14	1.50	21	0	19	0	0	0	0	0	1	1	0
......................................................................................................TGAAGCTGTACCGTACG----TAACGGTTG..........................	26	8	1.50	12	0	12	0	0	0	0	0	0	0	0
.......................................................................................................GAAGCTGTACCGTACG----TAACGGTTG..........................	25	8	1.25	10	0	9	0	0	0	0	1	0	0	0
...................................................................................................TGCTGAAGCTGTACCGTACG----TAACG..............................	25	10	1.00	10	0	10	0	0	0	0	0	0	0	0
......................TGATTTC-------CCTAATTGCTTGATTT..........................................................................................................	23	14	0.86	12	0	12	0	0	0	0	0	0	0	0
......................................................................................................TGAAGCTGTACCGTACG----TAACGG.............................	23	11	0.73	8	0	8	0	0	0	0	0	0	0	0
...................................................................................TGGTTGCTAAGTAGGGTGCTGAAGC..................................................	25	15	0.67	10	0	2	0	0	0	0	2	0	6	0
......................TGATTTC-------CCTAATTGCTTGATT...........................................................................................................	22	14	0.64	9	0	9	0	0	0	0	0	0	0	0
....................................................................TTGCAACAAGCACCCTGGTTGCTAAG................................................................	26	13	0.62	8	0	8	0	0	0	0	0	0	0	0
.............................................................TCTGCTATTGCAACAAGCACCCTGGT.......................................................................	26	10	0.50	5	0	5	0	0	0	0	0	0	0	0
...........................................................TATCTGCTATTGCAACAAGCACCC...........................................................................	24	12	0.50	6	0	6	0	0	0	0	0	0	0	0
..........................................................TTATCTGCTATTGCAACAAGCACCC...........................................................................	25	11	0.45	5	0	3	0	0	0	0	0	0	2	0
..............................................................................................TAGGGTGCTGAAGCTGTACCGTACG----...................................	25	10	0.40	4	0	4	0	0	0	0	0	0	0	0
...........................................................TATCTGCTATTGCAACAAGCACC............................................................................	23	12	0.33	4	0	3	0	1	0	0	0	0	0	0
...................................................................................................TGCTGAAGCTGTACCGTACG----TAACGG.............................	26	9	0.33	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................TAGGGTGCTGAAGCTGTACCGTAC........................................	24	10	0.30	3	0	3	0	0	0	0	0	0	0	0
.......................GATTTC-------CCTAATTGCTTGATTTT.........................................................................................................	23	14	0.29	4	0	4	0	0	0	0	0	0	0	0
...............................................................TGCTATTGCAACAAGCACCCTGGT.......................................................................	24	11	0.27	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................TGCTAAGTAGGGTGCTGAAG...................................................	20	15	0.27	4	0	2	0	0	0	0	0	0	2	0
.............................................................TCTGCTATTGCAACAAGCACCCTG.........................................................................	24	10	0.20	2	0	2	0	0	0	0	0	0	0	0
...........................................................TATCTGCTATTGCAACAAGCACCCTGG........................................................................	27	10	0.20	2	0	2	0	0	0	0	0	0	0	0
...........................................................TATCTGCTATTGCAACAAGCACCCTGGT.......................................................................	28	10	0.20	2	0	1	1	0	0	0	0	0	0	0
..................................................................TATTGCAACAAGCACCCTGG........................................................................	20	12	0.17	2	0	2	0	0	0	0	0	0	0	0
....................................................................TTGCAACAAGCACCCTGGTTGCT...................................................................	23	13	0.15	2	0	2	0	0	0	0	0	0	0	0
......................TGATTTC-------CCTAATTGCTTGATTTTT........................................................................................................	25	14	0.14	2	0	2	0	0	0	0	0	0	0	0
......................TGATTTC-------CCTAATTGCTTGATTTTTGC......................................................................................................	27	14	0.14	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................TGCTAAGTAGGGTGCTGAAGCTGTAC.............................................	26	15	0.13	2	0	2	0	0	0	0	0	0	0	0
...................................................................................TGGTTGCTAAGTAGGGTGCTGAAGCTG................................................	27	15	0.13	2	0	1	0	0	0	0	1	0	0	0
...................................................................................TGGTTGCTAAGTAGGGTGCTGAAGCT.................................................	26	15	0.13	2	0	2	0	0	0	0	0	0	0	0
...................................................................................TGGTTGCTAAGTAGGGTGCT.......................................................	20	16	0.13	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................CGTACG----TAACGGTTGTAAGT.....................	20	8	0.13	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................GTGCTGAAGCTGTACCGTACG----TAACGG.............................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CTGAAGCTGTACCGTACG----TAACGGTTG..........................	27	8	0.13	1	0	0	0	0	0	0	1	0	0	0
..................................................................TATTGCAACAAGCACCCTGGTTGCTAAGT...............................................................	29	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................................TTGCAACAAGCACCCTGGTTGCTAAGT...............................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................GTGCTGAAGCTGTACCGTACG----TA.................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................TGCTGAAGCTGTACCGTACG----TAAC...............................	24	10	0.10	1	0	0	0	0	0	0	1	0	0	0
..........................................TGCTTGATTTTTGCAATTATCTGC............................................................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................TAGGGTGCTGAAGCTGTACCGTACG----T..................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.............................................................TCTGCTATTGCAACAAGCACCCTGGA.......................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0
................................................................GCTATTGCAACAAGCACCCTGG........................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................GAAGCTGTACCGTACG----TAACGG.............................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...............................................................TGCTATTGCAACAAGCACCCTGG........................................................................	23	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................GAAGCTGTACCGTACG----TAACGGTT...........................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................TATAATCTTTTAACTTTTCG	20	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...............................................................TGCTATTGCAACAAGCACCCTGGTTGC....................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.................................................................CTATTGCAACAAGCACCCTGG........................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...................................................................ATTGCAACAAGCACCCTGGTTG.....................................................................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TGAAGCTGTACCGTACG----TAACG..............................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................ATTGCAACAAGCACCCTGGTTGC....................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.............................................................TCTGCTATTGCAACAAGCACCC...........................................................................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TTGTAAGTTTATAATCTTTTAACTT....	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................................CTGCTATTGCAACAAGCACCC...........................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0
................TCTTTATGATTTC-------CCTAATTGCTTGAT............................................................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..................................................................TATTGCAACAAGCACCCTGGT.......................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................TGATTTTTGCAATTATCTGT............................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................ATTGCAACAAGCACCCTGGT.......................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................TGCTGAAGCTGTACCGTACG----TA.................................	22	12	0.08	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................GCTGAAGCTGTACCGTACG----TAACG..............................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0
....................TATGATTTC-------CCTAATTGCTTGATT...........................................................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................................TTGCAACAAGCACCCTGGTT......................................................................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0
....................TATGATTTC-------CCTAATTGCTTGATTT..........................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................................TTGCAACAAGCACCCTGGTTGCTA..................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGCAACAAGCACCCTGGTTGCTAAG................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TGAAGCTGTACCGTACG----TAAC...............................	21	13	0.08	1	0	0	0	0	0	0	1	0	0	0
....................................................................TTGCAACAAGCACCCTGGTTG.....................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................AGCTGTACCGTACG----TAACGG.............................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0
......................................TAATTGCTTGATTTTTGCAATTA.................................................................................................	23	14	0.07	1	0	0	0	0	0	0	0	1	0	0
.....................ATGATTTC-------CCTAATTGCTTGATTTT.........................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0
......................TGATTTC-------CCTAATTGCTTGATTTTTGCA.....................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0
......................TGATTTC-------CCTAATTGCTTGATTTG.........................................................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0
......................TGATTTC-------CCTAATTGCTTGATTTTTG.......................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0
......................TGATTTC-------CCTAATTGCTTGAT............................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
......................TGATTTC-------CCTAATTGCTTGATTTTA........................................................................................................	25	14	0.07	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................TGCTAAGTAGGGTGCTGAAGCTG................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................GTTGCTAAGTAGGGTGCTGAAGC..................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................GGTTGCTAAGTAGGGTGCTGAAG...................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................TAAGTAGGGTGCTGAAGCTG................................................	20	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................TAAGTAGGGTGCTGAAGCT.................................................	19	15	0.07	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................TGCTAAGTAGGGTGCTGAAGA..................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TTGCTAAGTAGGGTGCTGAAG...................................................	21	15	0.07	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................CTAAGTAGGGTGCTGAAGCT.................................................	20	15	0.07	1	0	0	0	0	0	0	1	0	0	0
..........................TTC-------CCTAATTGCTTGATTTTTGC......................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TTGCTAAGTAGGGTGCTGAAGCTG................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TGCTAAGTAGGGTGCTGAAGCT.................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
........................................................................................GCTAAGTAGGGTGCTGAAGCTG................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................GCTGAAGCTGTACCGTAC........................................	18	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................TGGTTGCTAAGTAGGGTGCTGAAG...................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................GGTTGCTAAGTAGGGTGC........................................................	18	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................TAAGTAGGGTGCTGAAGTA.................................................	19	16	0.06	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................TGCTAAGTAGGGTGCTGAAA...................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TTGCTAAGTAGGGTGCTGAA....................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................CTGGTTGCTAAGTAGGGTGC........................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0
TCCATATAAAAATCATTCTTTATGATT...................................................................................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................AGGGTGCTGAAGCTGTTT.............................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCCATATAAAAATCATTCTTTATGATTTC-------CCTAATTGCTTGATTTTTGCAATTATCTGCTATAGCAACAAGCACCCTGGTTGCTAAGTAGGGTGCTGTAGCTGTACCGTACG----TAACGGTTGTAAGTTTATAATCTTTTAACTTTTCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................TGATTTC-------CCTAATTGCTTGATT...........................................................................................................	22	20	0.15	3	0	3	0	0	0	0
...................................................................................TGGTTGCTAAGTAGGGTGCT.......................................................	20	20	0.05	1	0	0	0	0	0	1
...................TTATGATTTC-------CCTAATTGCTTGATTT..........................................................................................................	26	20	0.05	1	0	1	0	0	0	0

droWil2

TCCATGTAGAATTCATCTCGGATAATTTC-------ACTAATCACTTTATCCTGACATCTGTTTGCTATCTCTGCAAGTACTCTTGTAGCTAAATAAGGTGCTGATGCCATACCGTACG----TTACTGTTGTCAATTTATATATTCTTAATTTTTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................TCACTTTATCCTGACATCTGTTTGC............................................................................................	25	18	3.89	70	0	60	0	10	0
....................................................TGACATCTGTTTGCTATCTCTGCAAG................................................................................	26	20	2.65	53	1	42	0	10	0
...............................................TATCCTGACATCTGTTTGCTATCTCT.....................................................................................	26	20	2.55	51	1	11	0	39	0
......................................TAATCACTTTATCCTGACATCTGTT...............................................................................................	25	19	2.05	39	0	28	0	11	0
............................................................................................................................TACTGTTGTCAATTTATATATTCT..........	24	20	1.95	39	0	9	0	30	0
...............................................TATCCTGACATCTGTTTGCTATCTC......................................................................................	25	20	1.70	34	0	21	0	13	0
......................................TAATCACTTTATCCTGACATCTGTTTGC............................................................................................	28	17	1.18	20	0	19	0	1	0
..............................................TTATCCTGACATCTGTTTGCTATCTC......................................................................................	26	18	1.00	18	0	12	0	6	0
.........................................TCACTTTATCCTGACATCTGTTTGCTA..........................................................................................	27	18	0.94	17	0	9	0	8	0
............................................................................................................................TACTGTTGTCAATTTATATATTCTTAATT.....	29	20	0.90	18	0	18	0	0	0
.........................................TCACTTTATCCTGACATCTGTTTGCT...........................................................................................	26	18	0.89	16	0	10	0	6	0
...............................................TATCCTGACATCTGTTTGCTATCTCTG....................................................................................	27	20	0.85	17	0	12	0	5	0
..............................................TTATCCTGACATCTGTTTGCTATCTCT.....................................................................................	27	18	0.83	15	0	3	0	12	0
......................................TAATCACTTTATCCTGACATCTGT................................................................................................	24	19	0.79	15	0	5	0	10	0
.................................................TCCTGACATCTGTTTGCTATCTCTGCAAG................................................................................	29	18	0.78	14	1	13	0	0	0
............................................................................................................................TACTGTTGTCAATTTATATATTCTTAA.......	27	20	0.75	15	0	3	0	12	0
....TGTAGAATTCATCTCGGATAATT...................................................................................................................................	23	20	0.65	13	0	0	0	13	0
..........................................CACTTTATCCTGACATCTGTTTGC............................................................................................	24	18	0.61	11	0	8	0	3	0
.........................................TCACTTTATCCTGACATCTGTT...............................................................................................	22	20	0.50	10	0	6	0	4	0
..............................................................................................................TACCGTACG----TTACTGTTGTCAATTTA..................	26	20	0.45	9	3	3	0	3	0
.......................................AATCACTTTATCCTGACATCTGTT...............................................................................................	24	19	0.42	8	0	6	0	2	0
......................................TAATCACTTTATCCTGACATCTGTTTG.............................................................................................	27	18	0.39	7	0	7	0	0	0
.........................TTTC-------ACTAATCACTTTATCCTGACATC...................................................................................................	27	14	0.36	5	0	4	0	1	0
..........................................CACTTTATCCTGACATCTGTTTGCTA..........................................................................................	26	18	0.33	6	0	5	0	1	0
.....................................................GACATCTGTTTGCTATCTCTGCAAG................................................................................	25	20	0.30	6	0	6	0	0	0
...ATGTAGAATTCATCTCGGATAATT...................................................................................................................................	24	20	0.30	6	0	0	0	6	0
.................................................TCCTGACATCTGTTTGCTATCTCTGC...................................................................................	26	20	0.30	6	0	4	0	2	0
..........................................CACTTTATCCTGACATCTGTTTGCT...........................................................................................	25	18	0.28	5	0	4	0	1	0
.............................................TTTATCCTGACATCTGTTTGCTATCTC......................................................................................	27	18	0.28	5	0	3	0	2	0
.................................................TCCTGACATCTGTTTGCTATCTCT.....................................................................................	24	20	0.25	5	0	0	0	5	0
...............................................TATCCTGACATCTGTTTGCTATCT.......................................................................................	24	20	0.25	5	0	5	0	0	0
............................................................................................................................TACTGTTGTCAATTTATATATTCTTAAA......	28	20	0.25	5	0	0	0	5	0
....................................................................................TGTAGCTAAATAAGGTGCTGATGCC.................................................	25	20	0.25	5	0	1	0	4	0
..............................................................................................................TACCGTACG----TTACTGTTGTCAATT....................	24	20	0.25	5	0	3	0	2	0
..............................................TTATCCTGACATCTGTTTGCTATCT.......................................................................................	25	18	0.22	4	0	1	0	3	0
...........................TC-------ACTAATCACTTTATCCTGACATC...................................................................................................	25	14	0.21	3	0	3	0	0	0
..........................TTC-------ACTAATCACTTTATCCTGACATC...................................................................................................	26	14	0.21	3	0	3	0	0	0
............................................................................................................................TACTGTTGTCAATTTATATATTCTTAAT......	28	20	0.20	4	0	2	0	2	0
.......................................................................................AGCTAAATAAGGTGCTGATGCCATAC.............................................	26	5	0.20	1	0	0	0	1	0
..........................................................................................TAAATAAGGTGCTGATGCCATACCG...........................................	25	5	0.20	1	0	0	0	1	0
....TGTAGAATTCATCTCGGATAATTT..................................................................................................................................	24	20	0.20	4	0	4	0	0	0
..............................................................................................................TACCGTACG----TTACTGTTGTCAATTTATA................	28	20	0.20	4	1	1	0	2	0
...............................................TATCCTGACATCTGTTTGCTATCTCTGC...................................................................................	28	20	0.20	4	0	2	0	2	0
.......................................AATCACTTTATCCTGACATCTGTTTGC............................................................................................	27	17	0.18	3	0	2	0	1	0
.........................................TCACTTTATCCTGACATCTGTTTG.............................................................................................	24	19	0.16	3	0	3	0	0	0
.......AGAATTCATCTCGGATAATTTC-------ACTAAT....................................................................................................................	28	20	0.15	3	0	3	0	0	0
....TGTAGAATTCATCTCGGATAATTTC-------..........................................................................................................................	25	20	0.15	3	0	3	0	0	0
............................................CTTTATCCTGACATCTGTT...............................................................................................	19	20	0.15	3	0	3	0	0	0
.............................................TTTATCCTGACATCTGTTTGCTATC........................................................................................	25	20	0.15	3	0	2	0	1	0
.....................................................................................................................CG----TTACTGTTGTCAATTTATATATTCT..........	27	20	0.15	3	0	3	0	0	0
.................................................TCCTGACATCTGTTTGCTATCTCTG....................................................................................	25	20	0.15	3	0	2	0	1	0
.................................................................................................................CGTACG----TTACTGTTGTCAATTTATA................	25	20	0.15	3	0	1	0	2	0
.........................TTTC-------ACTAATCACTTTATCCTGACA.....................................................................................................	25	14	0.14	2	0	2	0	0	0
........................................ATCACTTTATCCTGACATCTGTTTGC............................................................................................	26	17	0.12	2	0	2	0	0	0
.........................................TCACTTTATCCTGACATCTGTTTGCTAT.........................................................................................	28	18	0.11	2	0	1	0	1	0
..................................................CCTGACATCTGTTTGCTATCTCTGCAAG................................................................................	28	18	0.11	2	0	2	0	0	0
..........................................CACTTTATCCTGACATCTGTTTGCTAT.........................................................................................	27	18	0.11	2	0	2	0	0	0
..............................................TTATCCTGACATCTGTTTGCTATCTCTG....................................................................................	28	18	0.11	2	0	1	0	1	0
......................................TAATCACTTTATCCTGACATCTG.................................................................................................	23	19	0.11	2	0	2	0	0	0
TCCATGTAGAATTCATCTCGGATAATT...................................................................................................................................	27	20	0.10	2	0	2	0	0	0
.............................................................................................................................ACTGTTGTCAATTTATATATTCTTAATT.....	28	20	0.10	2	0	2	0	0	0
.......................................................CATCTGTTTGCTATCTCTGCAAG................................................................................	23	20	0.10	2	0	2	0	0	0
......TAGAATTCATCTCGGATAATT...................................................................................................................................	21	20	0.10	2	0	0	0	2	0
................................................ATCCTGACATCTGTTTGCTATCTCT.....................................................................................	25	20	0.10	2	0	1	0	1	0
..................................................CCTGACATCTGTTTGCTATCTCTGC...................................................................................	25	20	0.10	2	0	2	0	0	0
......TAGAATTCATCTCGGATAATTTC-------AC........................................................................................................................	25	20	0.10	2	0	0	0	2	0
............................................CTTTATCCTGACATCTGT................................................................................................	18	20	0.10	2	0	2	0	0	0
...............................................................................................................................TGTTGTCAATTTATATATTCTTAATT.....	26	20	0.10	2	0	0	0	2	0
......TAGAATTCATCTCGGATAATTTC-------ACTAAT....................................................................................................................	29	20	0.10	2	0	2	0	0	0
...........................................ACTTTATCCTGACATCTGTTTGC............................................................................................	23	20	0.10	2	0	1	0	1	0
............TCATCTCGGATAATTTC-------ACTAATCACTT...............................................................................................................	28	13	0.08	1	0	1	0	0	0
............................C-------ACTAATCACTTTATCCTGACATCTGTT...............................................................................................	28	14	0.07	1	0	1	0	0	0
...........................TC-------ACTAATCACTTTATCCTGACATCTG.................................................................................................	27	14	0.07	1	0	1	0	0	0
............................C-------ACTAATCACTTTATCCTGACATCTG.................................................................................................	26	14	0.07	1	0	1	0	0	0
.............................................TTTATCCTGACATCTGTTTGCTATCTCT.....................................................................................	28	18	0.06	1	0	0	0	1	0
........................................ATCACTTTATCCTGACATCTGTT...............................................................................................	23	19	0.05	1	0	1	0	0	0
..........................................CACTTTATCCTGACATCTGTTTG.............................................................................................	23	19	0.05	1	0	1	0	0	0
......................................TAATCACTTTATCCTGACATCTGTTT..............................................................................................	26	19	0.05	1	0	0	0	1	0
...............................................................................................................ACCGTACG----TTACTGTTGTCAATT....................	23	20	0.05	1	0	1	0	0	0
....TGTAGAATTCATCTCGGA........................................................................................................................................	18	20	0.05	1	0	1	0	0	0
..CATGTAGAATTCATCTCGGA........................................................................................................................................	20	20	0.05	1	1	0	0	0	0
..............................................................................................................TACCGTACG----TTACTGTTGTCAATTT...................	25	20	0.05	1	0	1	0	0	0
..........................................CACTTTATCCTGACATCTG.................................................................................................	19	20	0.05	1	0	1	0	0	0
.................................................TCCTGACATCTGTTTGCTATCTC......................................................................................	23	20	0.05	1	0	0	0	1	0
....................................................TGACATCTGTTTGCTATCTCTGCAA.................................................................................	25	20	0.05	1	0	0	0	1	0
......TAGAATTCATCTCGGATAATTTC-------ACTA......................................................................................................................	27	20	0.05	1	0	1	0	0	0
...............................................TATCCTGACATCTGTTTG.............................................................................................	18	20	0.05	1	0	0	0	1	0
............................................................................................................................TACTGTTGTCAATTTATATATTCTTA........	26	20	0.05	1	0	0	0	1	0
.........................................TCACTTTATCCTGACATCTGT................................................................................................	21	20	0.05	1	0	0	0	1	0
.............................................TTTATCCTGACATCTGTT...............................................................................................	18	20	0.05	1	0	1	0	0	0
............................................................................................................................TACTGTTGTCAATTTATATA..............	20	20	0.05	1	0	0	0	1	0
............................................................................................................................TACTGTTGTCAATTTATATATTCTA.........	25	20	0.05	1	0	0	0	1	0
................................................ATCCTGACATCTGTTTGCTATCTC......................................................................................	24	20	0.05	1	0	1	0	0	0
.............................................TTTATCCTGACATCTGTTTGC............................................................................................	21	20	0.05	1	0	1	0	0	0
...................................................................................TTGTAGCTAAATAAGGTGCTGATG...................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................TACG----TTACTGTTGTCAATTTATATATTCT..........	29	20	0.05	1	0	1	0	0	0
..............................................................................................................................CTGTTGTCAATTTATATATTCTTAAT......	26	20	0.05	1	0	1	0	0	0
..............................................TTATCCTGACATCTGTTTGCTATCTCTAT...................................................................................	29	20	0.05	1	0	1	0	0	0
..............................................................................................................TACCGTACG----TTACTGTTGTCAATTTAT.................	27	20	0.05	1	0	1	0	0	0
.......AGAATTCATCTCGGATAATT...................................................................................................................................	20	20	0.05	1	0	1	0	0	0
...............................................TATCCTGACATCTGTTTGCTATCTA......................................................................................	25	20	0.05	1	0	0	0	1	0
....TGTAGAATTCATCTCGGATAATTTC-------A.........................................................................................................................	26	20	0.05	1	0	0	0	1	0
.......................................AATCACTTTATCCTGACATC...................................................................................................	20	20	0.05	1	0	1	0	0	0
......TAGAATTCATCTCGGATAATTTC-------ACT.......................................................................................................................	26	20	0.05	1	0	0	0	1	0
.CCATGTAGAATTCATCTCGGATAATT...................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.................................................................................................................CGTACG----TTACTGTTGTCAATTTA..................	23	20	0.05	1	0	1	0	0	0
....................................................TGACATCTGTTTGCTATCTCTGCAAGTA..............................................................................	28	20	0.05	1	0	1	0	0	0
...............................................TATCCTGACATCTGTTTGCT...........................................................................................	20	20	0.05	1	0	1	0	0	0
.........AATTCATCTCGGATAATTTC-------ACTAAT....................................................................................................................	26	20	0.05	1	0	0	0	1	0
...............................................................................................................................TGTTGTCAATTTATATATTCTTAATTT....	27	20	0.05	1	0	0	0	1	0
..............................................TTATCCTGACATCTGTTTGCT...........................................................................................	21	20	0.05	1	0	1	0	0	0
.......................................................CATCTGTTTGCTATCTCTGCAA.................................................................................	22	20	0.05	1	0	0	0	1	0
.CCATGTAGAATTCATCTCGGA........................................................................................................................................	21	20	0.05	1	1	0	0	0	0
.....................................................GACATCTGTTTGCTATCTCTGC...................................................................................	22	20	0.05	1	0	1	0	0	0
....TGTAGAATTCATCTCGGATAATTTC-------AC........................................................................................................................	27	20	0.05	1	0	1	0	0	0
....................................................TGACATCTGTTTGCTATCTCTGCAAGT...............................................................................	27	20	0.05	1	0	1	0	0	0
...................................................................................................................TACG----TTACTGTTGTCAATTTATATAT.............	26	20	0.05	1	0	0	0	1	0
...........TTCATCTCGGATAATTTC-------ACTAAT....................................................................................................................	24	20	0.05	1	0	1	0	0	0
...........................................ACTTTATCCTGACATCTGTTTGCT...........................................................................................	24	20	0.05	1	0	1	0	0	0
.................................................................................................................CGTACG----TTACTGTTGTCAATTTATAT...............	26	20	0.05	1	0	1	0	0	0
...........................................................................................................................TTACTGTTGTCAATTTATATATTCT..........	25	20	0.05	1	0	1	0	0	0
..................................................................................................................................TGTCAATTTATATATTCTTAATT.....	23	20	0.05	1	0	1	0	0	0
......................................................................................................................G----TTACTGTTGTCAATTTATATATTCT..........	26	20	0.05	1	0	1	0	0	0
............TCATCTCGGATAATTTC-------ACTAA.....................................................................................................................	22	20	0.05	1	0	0	0	1	0
...............................................TATCCTGACATCTGTTTGCTATCTCTT....................................................................................	27	20	0.05	1	0	0	0	1	0
......................................................................................TAGCTAAATAAGGTGCTGATGC..................................................	22	20	0.05	1	0	0	0	1	0
...................................................................................TTGTAGCTAAATAAGGTGCTGATGCC.................................................	26	20	0.05	1	0	1	0	0	0
...............................................................................................................................TGTTGTCAATTTATATATTCTTAATTTT...	28	20	0.05	1	0	0	0	1	0
...ATGTAGAATTCATCTCGGATAATTTC-------AC........................................................................................................................	28	20	0.05	1	0	1	0	0	0

droVir3

TCGATATAAATGTAATTTCTGATTATTTC-------CCCAACGACTTTATTTTTACAATTATTAGCTAACTCTACCAGCACTCCAGTTGCTAAGGATGGGGCTGACGCGGTACCGTATT----CAACCGTTGTGAATTTGTAACCTGCTAAT------

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

TCCATATACAAATCTGTTTTAATTATTTC-------TTTAATTGT--TATTATCGCAATTATTAGCTATGTCTAAAAGAACTCTAGTGGCTAAGTAAGGAGCTGATGCAGTACCATAAG----TGACTGTGGTAAGCTTAAAGTTCTTTAATTTTTTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................TATGTCTAAAAGAACTCTAGTGGCT...................................................................	25	20	38.10	762	305	32	0	1	400	24
..................................................................TATGTCTAAAAGAACTCTAGTGGC....................................................................	24	20	20.75	415	239	15	0	0	155	6
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCTT..........	25	20	15.15	303	302	0	0	0	0	1
..................................................................TATGTCTAAAAGAACTCTAGTGGCTAAG................................................................	28	20	6.50	130	118	0	0	0	10	2
..................................................................TATGTCTAAAAGAACTCTAGTGGCC...................................................................	25	20	6.30	126	0	0	0	0	126	0
..................................................................TATGTCTAAAAGAACTCTAGTGGCTA..................................................................	26	20	5.20	104	78	1	0	0	24	1
..................................................................TATGTCTAAAAGAACTCTAGTGG.....................................................................	23	20	3.95	79	62	1	0	0	15	1
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCT...........	24	20	3.75	75	52	0	0	0	22	1
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCTTT.........	26	20	2.30	46	38	0	0	0	8	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCTTTAA.......	28	4	2.25	9	9	0	0	0	0	0
...................................................................ATGTCTAAAAGAACTCTAGTGGCT...................................................................	24	20	1.60	32	31	0	0	0	1	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCTTTA........	27	20	1.35	27	25	0	0	0	2	0
............................................................................................................................GACTGTGGTAAGCTTAAAGTTCTT..........	24	20	1.20	24	24	0	0	0	0	0
..............................................................................................TAAGGAGCTGATGCAGTACCATAAG----...................................	25	20	0.90	18	10	1	0	0	0	7
...................................................................ATGTCTAAAAGAACTCTAGTGGCTAAG................................................................	27	20	0.85	17	17	0	0	0	0	0
.................................................................CTATGTCTAAAAGAACTCTAGTGGCT...................................................................	26	20	0.85	17	4	0	0	0	13	0
...................................................................ATGTCTAAAAGAACTCTAGTGGC....................................................................	23	20	0.85	17	15	1	0	0	1	0
.................................................................CTATGTCTAAAAGAACTCTAGTGGC....................................................................	25	20	0.70	14	0	2	0	0	12	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTC............	23	20	0.65	13	9	1	0	0	2	1
.................................................................CTATGTCTAAAAGAACTCTAGTGG.....................................................................	24	20	0.60	12	11	0	0	0	1	0
..................................................TATCGCAATTATTAGCTATGTCTAAAA.................................................................................	27	2	0.50	1	1	0	0	0	0	0
..................................................................TATGTCTAAAAGAACTCTAGTGGCTAA.................................................................	27	20	0.50	10	6	0	0	0	2	2
.............................................................TTAGCTATGTCTAAAAGAACTCTAGTGGC....................................................................	29	2	0.50	1	1	0	0	0	0	0
......TACAAATCTGTTTTAATTATT...................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0
............................................................................................................................GACTGTGGTAAGCTTAAAGTTCTTTAA.......	27	5	0.40	2	2	0	0	0	0	0
..............................................................................................TAAGGAGCTGATGCAGTACCATAAG----T..................................	26	20	0.35	7	5	1	0	0	1	0
..............................................................................................TAAGGAGCTGATGCAGTACCATAAG----TG.................................	27	20	0.35	7	6	1	0	0	0	0
......................................................................TCTAAAAGAACTCTAGTGGCTAAG................................................................	24	20	0.35	7	6	0	0	0	1	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCC...........	24	20	0.30	6	0	0	0	0	6	0
..................................................................TATGTCTAAAAGAACTCTAGTGGCTC..................................................................	26	20	0.25	5	3	2	0	0	0	0
......................................................................TCTAAAAGAACTCTAGTGGCTAAGTAA.............................................................	27	20	0.25	5	3	0	0	0	2	0
................................................................................................................CCATAAG----TGACTGTGGTAAGCTTAAAG...............	27	20	0.25	5	4	0	0	0	1	0
...........................................................................AAGAACTCTAGTGGCTAAGTAAGGAGC........................................................	27	20	0.25	5	3	0	0	0	2	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCTTTAAT......	29	4	0.25	1	1	0	0	0	0	0
..........................................................................................TAAGTAAGGAGCTGATGCAGTACC............................................	24	20	0.20	4	2	0	0	0	2	0
..................................................................TATGTCTAAAAGAACTCTAGT.......................................................................	21	20	0.20	4	2	0	0	0	1	1
...................................................................ATGTCTAAAAGAACTCTAGTGGCTAA.................................................................	26	20	0.20	4	4	0	0	0	0	0
................................................................................................................CCATAAG----TGACTGTGGTAAGCTTAAAGT..............	28	20	0.20	4	3	0	0	0	1	0
..................................................................TATGTCTAAAAGAACTCTAGTGGCTT..................................................................	26	20	0.20	4	2	1	0	0	1	0
............................................................................................................................GACTGTGGTAAGCTTAAAGTTCT...........	23	20	0.15	3	3	0	0	0	0	0
........................................................................TAAAAGAACTCTAGTGGCTAAGTAAGG...........................................................	27	20	0.15	3	3	0	0	0	0	0
.................................................................................TCTAGTGGCTAAGTAAGGAGCTGAT....................................................	25	20	0.15	3	3	0	0	0	0	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCTC..........	25	20	0.15	3	1	0	0	0	2	0
...................................................................ATGTCTAAAAGAACTCTAGTGG.....................................................................	22	20	0.15	3	2	0	0	0	1	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCTTTC........	27	20	0.15	3	3	0	0	0	0	0
............................................................................AGAACTCTAGTGGCTAAGTAAGGAGC........................................................	26	20	0.15	3	2	0	0	0	1	0
..........................................................................................TAAGTAAGGAGCTGATGCAGTACCA...........................................	25	20	0.15	3	3	0	0	0	0	0
...............................................................................................................ACCATAAG----TGACTGTGGTAAGCTTAAAG...............	28	20	0.15	3	3	0	0	0	0	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCTTC.........	26	20	0.15	3	2	0	0	0	1	0
.......................................................................CTAAAAGAACTCTAGTGGCTAAG................................................................	23	20	0.15	3	3	0	0	0	0	0
...................................................................................TAGTGGCTAAGTAAGGAGCTGATGCAG................................................	27	20	0.10	2	2	0	0	0	0	0
........................................................................TAAAAGAACTCTAGTGGCTAAGTA..............................................................	24	20	0.10	2	2	0	0	0	0	0
..........................................................................................TAAGTAAGGAGCTGATGCAGTACCATA.........................................	27	20	0.10	2	2	0	0	0	0	0
....................................................................TGTCTAAAAGAACTCTAGTGGC....................................................................	22	20	0.10	2	2	0	0	0	0	0
.....................................................................GTCTAAAAGAACTCTAGTGGCTAAG................................................................	25	20	0.10	2	1	0	0	0	1	0
..................................................................TATGTCTAAAAGAACTCTAG........................................................................	20	20	0.10	2	1	0	0	0	1	0
...................................................................................................................TAAG----TGACTGTGGTAAGCTTAAAGT..............	25	20	0.10	2	0	0	0	0	2	0
...........................................................................AAGAACTCTAGTGGCTAAGTAAGG...........................................................	24	20	0.10	2	1	0	0	0	1	0
..................................................................TATGTCTAAAAGAACTCTAGTG......................................................................	22	20	0.10	2	2	0	0	0	0	0
.................................................................................TCTAGTGGCTAAGTAAGGAGCTGATG...................................................	26	20	0.10	2	2	0	0	0	0	0
.......................................................................CTAAAAGAACTCTAGTGGCT...................................................................	20	20	0.10	2	2	0	0	0	0	0
.................................................................................TCTAGTGGCTAAGTAAGGAGCTGATC...................................................	26	20	0.10	2	1	0	0	0	0	1
......................................................................................TGGCTAAGTAAGGAGCTGATGCAGTACC............................................	28	20	0.10	2	2	0	0	0	0	0
.......................................................................CTAAAAGAACTCTAGTGGCTAAGT...............................................................	24	20	0.10	2	2	0	0	0	0	0
..............................................................................................TAAGGAGCTGATGCAGTACC............................................	20	20	0.10	2	0	0	0	0	2	0
..................................................................................................................ATAAG----TGACTGTGGTAAGCTTAAAGT..............	26	20	0.10	2	1	0	0	0	1	0
..............................................................................................TAAGGAGCTGATGCAGTACCATAAG----TGA................................	28	20	0.10	2	2	0	0	0	0	0
..............................................................................................TAAGGAGCTGATGCAGTACCATAAG----TGAC...............................	29	20	0.10	2	0	0	0	0	1	1
.............................................................................GAACTCTAGTGGCTAAGTAAGGAGC........................................................	25	20	0.10	2	1	0	0	0	1	0
..................................................................TATGTCTAAAAGAACTCTAGTGGCG...................................................................	25	20	0.10	2	0	0	0	0	2	0
..................................................................TATGTCTAAAAGAACTCTAGTGGAC...................................................................	25	20	0.10	2	0	0	0	0	2	0
...............................................................................................AAGGAGCTGATGCAGTACCAT..........................................	21	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGT..............	21	20	0.05	1	1	0	0	0	0	0
.........................................................................AAAAGAACTCTAGTGGCTAAGTAAG............................................................	25	20	0.05	1	0	0	0	0	1	0
.......................................................................................GGCTAAGTAAGGAGCTGATGCAGT...............................................	24	20	0.05	1	1	0	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTAAGCTTAAAG...............	24	20	0.05	1	1	0	0	0	0	0
.................................................................................................................CATAAG----TGACTGTGGTAAGCTTAAAGT..............	27	20	0.05	1	1	0	0	0	0	0
........................................................................TAAAAGAACTCTAGTGGCTAAGTAA.............................................................	25	20	0.05	1	1	0	0	0	0	0
................................................................................................................................GTGGTAAGCTTAAAGTTC............	18	20	0.05	1	0	0	0	0	1	0
.......................................................................................GGCTAAGTAAGGAGCTGATGCACCC..............................................	25	20	0.05	1	1	0	0	0	0	0
..................................................................................................GAGCTGATGCAGTACCATAAG----TG.................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................................................................GCAGTACCATAAG----TGACTGTGGTAAG......................	26	20	0.05	1	1	0	0	0	0	0
....................................................................TGTCTAAAAGAACTCTAGTGGCTA..................................................................	24	20	0.05	1	1	0	0	0	0	0
...............................................................................................AAGGAGCTGATGCAGTACCATAAG----TGAC...............................	28	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTTCTTG.........	26	20	0.05	1	1	0	0	0	0	0
..............................................................................................TAAGGAGCTGATGCAGTACCATAAA----AA.................................	27	20	0.05	1	0	0	0	0	0	1
..................................................................................CTAGTGGCTAAGTAAGGAGCTGATG...................................................	25	20	0.05	1	1	0	0	0	0	0
...............................................................................ACTCTAGTGGCTAAGTAAGGAGCTG......................................................	25	20	0.05	1	0	1	0	0	0	0
............................................................................................................................GACTGTGGTAAGCTTAAAGTTCTTT.........	25	20	0.05	1	1	0	0	0	0	0
......................................................................TCTAAAAGAACTCTAGTGGCC...................................................................	21	20	0.05	1	0	0	0	0	1	0
................................................................GCTATGTCTAAAAGAACTCTAGTGGC....................................................................	26	20	0.05	1	0	0	0	0	1	0
...............................................................................................AAGGAGCTGATGCAGTACCATAAG----...................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................................................ATGCAGTACCATAAG----TGACTGTGGTA........................	26	20	0.05	1	1	0	0	0	0	0
...................................................................ATGTCTAAAAGAACTCTAGTGGCTAAGT...............................................................	28	20	0.05	1	1	0	0	0	0	0
......................................................................TCTAAAAGAACTCTAGTGGCTAAGTA..............................................................	26	20	0.05	1	1	0	0	0	0	0
............................................................................................................AGTACCATAAG----TGACTGTGGTAAGC.....................	25	20	0.05	1	1	0	0	0	0	0
.........................................................................................CTAAGTAAGGAGCTGATGCAGTACCATA.........................................	28	20	0.05	1	1	0	0	0	0	0
.....................................................................GTCTAAAAGAACTCTAGTGGCT...................................................................	22	20	0.05	1	0	0	0	0	1	0
..................................................................TATGTCTAAAAGAACTCTAGTGCTA...................................................................	25	20	0.05	1	0	0	0	0	1	0
..................................................................TATGTCTAAAAGAACTCTAGTGGCTAAGC...............................................................	29	20	0.05	1	1	0	0	0	0	0
................................................................................................................CCATAAG----TGACTGTGGTAAGCTTA..................	24	20	0.05	1	0	0	0	0	1	0
............................................................................AGAACTCTAGTGGCTAAGTAAGG...........................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................TAGTGGCTAAGTAAGGAGC........................................................	19	20	0.05	1	1	0	0	0	0	0
.............................................................................................................GTACCATAAG----TGACTGTGGTAAGCT....................	25	20	0.05	1	0	0	0	0	1	0
......................................................................................TGGCTAAGTAAGGAGCTGATGCAGTA..............................................	26	20	0.05	1	1	0	0	0	0	0
................................................................................................................................GTGGTAAGCTTAAAGTTCTT..........	20	20	0.05	1	0	0	0	0	1	0
.............CTGTTTTAATTATTTC-------TTTAATTG..................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................TAAAAGAACTCTAGTGGCTAAG................................................................	22	20	0.05	1	0	0	0	0	1	0
.................................................................................................GGAGCTGATGCAGTACCATAAG----...................................	22	20	0.05	1	1	0	0	0	0	0
..................................................................TATGTCTAAAAGAACTCTAGTGGCTAAT................................................................	28	20	0.05	1	0	0	0	0	1	0
.....................................................................................................CTGATGCAGTACCATAAG----TGACTGTGG..........................	27	20	0.05	1	1	0	0	0	0	0
...................................................................................................................TAAG----TGACTGTGGTAAGCTTAAAGTTC............	27	20	0.05	1	1	0	0	0	0	0
...........................................................................AAGAACTCTAGTGGCTAAGTA..............................................................	21	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAG...............	20	20	0.05	1	1	0	0	0	0	0
........................................................................TAAAAGAACTCTAGTGGCTAAGTAAG............................................................	26	20	0.05	1	1	0	0	0	0	0
................................................................GCTATGTCTAAAAGAACTCTAGTGGCT...................................................................	27	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................TGACTGTGGTAAGCTTAAAGTT.............	22	20	0.05	1	1	0	0	0	0	0
...................................................................ATGTCTAAAAGAACTCTAGTGGCC...................................................................	24	20	0.05	1	0	0	0	0	1	0
....................................................................TGTCTAAAAGAACTCTAGTGGCT...................................................................	23	20	0.05	1	0	0	0	0	1	0
..............................................................................................TAAGGAGCTGATGCAGTACCATAAG----A..................................	26	20	0.05	1	0	0	0	0	0	1
................................................................GCTATGTCTAAAAGAACTCTAGTGG.....................................................................	25	20	0.05	1	1	0	0	0	0	0
.................................................................CTATGTCTAAAAGAACTCTAGTGGCC...................................................................	26	20	0.05	1	0	0	0	0	1	0
.......................................................................CTAAAAGAACTCTAGTGGC....................................................................	19	20	0.05	1	0	0	0	0	1	0
......................................................................................................TGATGCAGTACCATAAG----TGACTGTGGTA........................	28	20	0.05	1	1	0	0	0	0	0
..................................................................TATGTCTAAAAGAACTCTA.........................................................................	19	20	0.05	1	1	0	0	0	0	0
.......................................................................................................GATGCAGTACCATAAG----TGACTGT............................	23	20	0.05	1	1	0	0	0	0	0
..............................................................................AACTCTAGTGGCTAAGTAAGGAGCTGA.....................................................	27	20	0.05	1	1	0	0	0	0	0
...............................................................................................................ACCATAAG----TGACTGTGGTAAGCTTA..................	25	20	0.05	1	1	0	0	0	0	0
..............................................................................................................TACCATAAG----TGACTGTGGTAAGCT....................	24	20	0.05	1	1	0	0	0	0	0
..............................................................................................TAAGGAGCTGATGCAGTACTC...........................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................................................TGATGCAGTACCATAAG----TGACTGTGG..........................	26	20	0.05	1	0	0	0	0	1	0
............................................................................................AGTAAGGAGCTGATGCAGTACCA...........................................	23	20	0.05	1	1	0	0	0	0	0
..............................................................................................TAAGGAGCTGATGCAGTACCATAA........................................	24	20	0.05	1	1	0	0	0	0	0
....................................................................................................................AAG----TGACTGTGGTAAGCTTAAAGT..............	24	20	0.05	1	1	0	0	0	0	0
.................................................................................................................CATAAG----TGACTGTGGTAAGCTTAAAG...............	26	20	0.05	1	1	0	0	0	0	0
..................................................................TATGTCTAAAAGAACTCTAGTGGCGCC.................................................................	27	20	0.05	1	0	0	0	0	1	0
.............................................................................................GTAAGGAGCTGATGCAGTACC............................................	21	20	0.05	1	0	0	0	0	1	0
.................................................................CTATGTCTAAAAGAACTCTAGTGGCTAAG................................................................	29	20	0.05	1	1	0	0	0	0	0
..........................................................................AAAGAACTCTAGTGGCTAAGTAAGGAGC........................................................	28	20	0.05	1	1	0	0	0	0	0

droGri2

TCAACATAGAAATCATTTTCCAATGCAGCAGCTCCTAATGGAAGTTCTCTTTTTACCTTT-TGTACCAGATATTGTAGGCATTTTGTGCCTAAATATTGTGCAGCCTTTGTTCCATATG----TAACTGTTTTCAATCTGTAGTACCGTAAATCCTCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

der_216

scaffold_4929:26373035-26373085 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.8	-22.6	-22.5