ID:

der_210

 Coordinate:

scaffold_1361:4367-4420 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.7 -34.6 -34.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
IDEFIX_I-intLTRGypsy+
mature

star

  1. der_210  scaffold_1361:4400-4420 -
  2. scaffold_2704:9047-9067 +
  3. scaffold_3067:5076-5096 -
  4. scaffold_3146:3529-3549 +
  5. scaffold_3264:3989-4009 -
  6. scaffold_4709:16154-16174 +
  7. scaffold_4784:24402328-24402348 -
  8. scaffold_4784:25307269-25307289 -
  9. scaffold_4845:379626-379646 -
  10. scaffold_4913:3741-3761 +

Sense Strand Reads

AGTAGGTTTACTTCAATATTTACTTCATTGGACATTGGTGACATATGGTCATACTTCCCATATTACTTATCTGTATGAGATAAGTAATTTGGGAAGTATGTGACATCGCTTAACTCTCTTGGTCTGGTCTGGAATTATTGTATTTACTTTTAAT

***********************************.(((((....((..(((((((((((.(((((((((((.....))))))))))).)))))))))))...)))))))........************************************ 		Read size # Mismatch Hit Count Total Norm Total V107

male body		 V108

head

 M055

female body

 V040

embryo

 V060

head

 M057

embryo

 GSM1528801

follicle cells
.................................................................................AAGTAATTTGGGAAGTATGTGA................................................... 22 0 1 711.00 711 476 114 103 8 8 2 0
.................................................................................AAGTAATTTGGGAAGTATGTG.................................................... 21 0 1 261.00 261 134 78 40 5 4 0 0
................................................................................TAAGTAATTTGGGAAGTATGTGA................................................... 23 0 1 159.00 159 116 24 17 1 1 0 0
................................................................................TAAGTAATTTGGGAAGTATGTG.................................................... 22 0 1 159.00 159 103 37 15 3 0 1 0
...............................................................................ATAAGTAATTTGGGAAGTATG...................................................... 21 0 1 76.00 76 49 20 5 2 0 0 0
................................................................................TAAGTAATTTGGGAAGTATG...................................................... 20 0 1 54.00 54 42 5 5 1 0 1 0
...............................................................................ATAAGTAATTTGGGAAGTATGT..................................................... 22 0 1 44.00 44 27 9 3 3 1 1 0
................................................................................TAAGTAATTTGGGAAGTATGT..................................................... 21 0 1 41.00 41 26 7 5 1 1 1 0
..................................................................................AGTAATTTGGGAAGTATGTGA................................................... 21 0 1 37.00 37 13 6 17 1 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGT..................................................... 20 0 1 30.00 30 17 6 7 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTGAA.................................................. 23 1 1 27.00 27 11 0 13 2 0 1 0
.................................................................................AAGTAATTTGGGAAGTATGTGAC.................................................. 23 0 1 26.00 26 13 5 7 0 0 1 0
.................................................................................AAGTAATTTGGGAAGTATGTGT................................................... 22 1 1 20.00 20 15 5 0 0 0 0 0
..................................................................................AGTAATTTGGGAAGTATGTGAC.................................................. 22 0 1 18.00 18 10 4 3 0 0 1 0
.................................................................................AAGTAATTTGGGAAGTATG...................................................... 19 0 1 16.00 16 12 3 1 0 0 0 0
................................................................................TAAGTAATTTGGGAAGTATGTT.................................................... 22 1 1 12.00 12 8 0 4 0 0 0 0
...............................................................................ATAAGTAATTTGGGAAGTAT....................................................... 20 0 1 11.00 11 10 0 1 0 0 0 0
...............................................................................ATAAGTAATTTGGGAAGTATGTG.................................................... 23 0 1 10.00 10 5 4 1 0 0 0 0
................................................................................TAAGTAATTTGGGAAGTATGTGAC.................................................. 24 0 1 10.00 10 7 1 0 0 0 2 0
................................................................................TAAGTAATTTGGGAAGTATGTGT................................................... 23 1 1 9.00 9 6 2 1 0 0 0 0
..................................................................................AGTAATTTGGGAAGTATGTG.................................................... 20 0 1 8.00 8 4 0 4 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTTA................................................... 22 1 1 7.00 7 0 4 2 1 0 0 0
................................................................................TAAGTAATTTGGGAAGTATGTGAA.................................................. 24 1 1 7.00 7 5 0 2 0 0 0 0
.................................................................................AAGTAATTTGTGAAGTATGTGA................................................... 22 1 1 6.00 6 0 5 0 1 0 0 0
................................................................................TAAGTAATTTGGGAAGTAT....................................................... 19 0 1 6.00 6 5 0 1 0 0 0 0
..................................................................................AGTAATTTGGGAAGTATGTGAA.................................................. 22 1 1 5.00 5 2 1 2 0 0 0 0
.................................................................................AAGTAATTTTGGAAGTATGTG.................................................... 21 1 1 5.00 5 2 2 0 1 0 0 0
..................................................................................AGTAATTTGGGAAGTATGTGACA................................................. 23 0 1 5.00 5 3 1 0 1 0 0 0
.................................................................................AATTAATTTGGGAAGTATGTGA................................................... 22 1 1 4.00 4 3 1 0 0 0 0 0
................................................................................TAAGTAATTTGTGAAGTATGTG.................................................... 22 1 1 4.00 4 0 4 0 0 0 0 0
.................................................................................AAGAAATTTGGGAAGTATGTGA................................................... 22 1 1 3.00 3 0 0 3 0 0 0 0
.................................................................................AAGCAATTTGGGAAGTATGTGA................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0
................................................................................AAAGTAATTTGGGAAGTATGTGA................................................... 23 1 1 2.00 2 0 0 2 0 0 0 0
.................................................................................AAGTAGTTTGGGAAGTATGTGA................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0
.................................................................................AATTAATTTGGGAAGTATGTG.................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
................................................................................TAAGCAATTTGGGAAGTATGTT.................................................... 22 2 1 2.00 2 0 0 2 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTAT....................................................... 18 0 1 2.00 2 1 0 1 0 0 0 0
...................................................................................GTAATTTGGGAAGTATGTGA................................................... 20 0 1 2.00 2 1 0 1 0 0 0 0
................................................................................TAAGTAATTTTGGAAGTATGTG.................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
.................................................................................AGGTAATTTGGGAAGTATGTGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
................................................................................TAAGTAATTTGGTAAGTATGTG.................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
....................................................................................TAATTTGGGAAGTATGTG.................................................... 18 0 1 2.00 2 1 1 0 0 0 0 0
................................................................................TAAGCAATTTGGGAAGTATGTG.................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0
................................................................................CAAGTAATTTGGGAAGTATGTGA................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTAA................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0
...............................................................................ATAAGTAATTTGGGAAGTATGTGA................................................... 24 0 1 2.00 2 1 1 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTCA................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
................................................................................TAAGTAATTTGGGAAGTATGTTA................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................TCGCTTAACTCTCTTGGTCTGGT.......................... 23 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................TAATTTGGGAAGTATGTGA................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................AAGTATTTTGGGAAGTATGTG.................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................AAGAAATTTGGGAAGTATGTG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................AAATTTGGGAAGTATGTGA................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGTAACTTGGGAAGTATGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................ATAGTAATTTGGGAAGTATGT..................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
................................................................................TAAGTAATTTGGGAAGTATGCG.................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................GAAGTAATTTGGGAAGTATGTGA................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................TAAGTAATTTGGGAAGTATGTGC................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................TAAGTAATTTGGGAAGTATGTCA................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
................................................................................TAAGTAATTTGGGAATTATGT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
...................TTACTTCATTGGACATTGGTGACA............................................................................................................... 24 0 2 1.00 2 0 0 2 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGCG.................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTT.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGTAAATTGGGAAGTATGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................ATCAATTTGGGAAGTATGTGACA................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
................................................................................TAAGTAATTTGGGAAGTATGTGACT................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................TAAGTACTTTGGGAAGTATGTGA................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................................ATAAGTAATTTGGGAAGTATGTT.................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TGTGACATCGCTTAACTCTCTTGG................................ 24 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................AAGTGATTTGGGAAGTATGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................AATTTGGGAAGTATGTGA................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTGAAA................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGTAATTTGGTAAGCATGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
...............................................................................ATAGGTAATTTGGGAAGTATG...................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGCGA................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................ATGTAATTTGGGAAGTATGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................ATTAATTTGGGAAGTATGTGAC.................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0
...................................................................................GTAATTTGGGAAGTATGTG.................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
................................................................................TAGGTAATTTGGGAAGTATGTG.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................AAGTAATTTGGGCAGTATGTGA................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0
................................................................................TAAGTAATTTGGGAAGTATGTGAAAA................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGTAATTTGGGAAGTATGTGAC.................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0
.....................................................................................................GACATCGCTTAACTCTCTTGGTCTGG........................... 26 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTGACT................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0
...................................................................................GTAATTTGGGAAGTATGTGACA................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................GTAATTTGGGAAGTATGTGAT.................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................TAAGTAATTTGGGAAGTATTTGT................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................................ATGTAATTTGGGAAGTATGTG.................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
..................................................................................AGTAATTTGGAAAGTATGTGA................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTGTGTGA................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0
.................................................................................AAGTAATTTGGGAAGTATGTGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTGTC.................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................AAGTAATTTGGGTAGTATGTGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
..................................................................................AGGAATTTGGGAAGTATGTG.................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTGATT................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGGAATTTGGGAAGTATG...................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................TAAGCAATTTGGGAAGTATGT..................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................TAGTAATTTGGGAAGTATGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AATTAATTTGGGAAGTATGTGAC.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................CGTAATTTGGGAAGTATGTG.................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
..............................................................................GATAAGTAATTTGGGAAGTATG...................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................TTAAGTAATTTGGGAAGTATG...................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................AAGTAATTCGGGAAGTATGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................TAAGTAATTTGGGAAGTATGTGAT.................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................................ATAAGTAATTTGGGTAGTATG...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................TGACATCGCTTAACTCTCTTGGTC.............................. 24 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................AAGTAATTTGGGAAGCATGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................AGTAATTTGGGAAGTATGT..................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................TAAGTAATTTGGGAAGTTT....................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................GTAATTTGGGATGTATGTGAC.................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTACGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGCATGTG.................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
.................................................................................AAGTAATTTGGGAATTATGTGA................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
..................................................................................AGTAATTTGGGAAGTATGTGAT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATATGAC.................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................AAGTAATTTTGGAAGTATGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
................................................................................TAAGTAATTTGGGAAGAATGTG.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................TAATTAATTTGGGAAGTATGTG.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
................................................................................TAAGTAATTTCGGAAGTATGTGA................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTGC................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................TAAGTAATTTGTGAAGTATGTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGGAATTTGGGAAGTATGTG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................TAACTACTTTGGGAAGTCTGTG.................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0
...............................................................................ATACGTAATTTGGGAAGTATGT..................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................AAGACATTTGGGAAGTATGTGA................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0
..................................................................................AGTAATTTGGGAAGTATGTGACT................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................AAATTTGGGAAGTATGTG.................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................TAAGGAATTTGGGAAGTATG...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGTAATTTGGGAAGAATGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................................................AGTGATTTGGGAAGTATGTGAC.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................AAGTAATTTGCGAAGTATGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AAGTAATTTGGTAAGTATGT..................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0
......................................................................CTGTATGAGATAAGTAATTTGGGAA........................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0
..........................................................................................GGGAAGTATGTGACATCGCT............................................ 20 0 2 0.50 1 0 0 1 0 0 0 0
................................................................................TAAGGAATTTGGGAAGTAT....................................................... 19 1 2 0.50 1 0 0 0 1 0 0 0
................................................................................TAAGTAATTTGGGAAGTATGG..................................................... 21 1 2 0.50 1 0 0 1 0 0 0 0
.................................................................................AAATAATTTGGGAAGTATGTG.................................................... 21 1 2 0.50 1 0 0 0 0 1 0 0
...................................................TACTTCCCATATTACTTCTCTGTATGAGA.......................................................................... 29 1 2 0.50 1 0 0 0 0 0 0 1
...............................................................................ATAAGCAATTTTGGAAGTATG...................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0
.................................................................................AAGTAATTTGGGAGGTATGTGA................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0
................................................TCATACTTCCCATATTACTTAT.................................................................................... 22 0 2 0.50 1 0 0 0 0 0 1 0
................................................................................TAAGTAATTTGGGGAGTATGTG.................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0
.........................................................................TATGAGATAAGTAATTTGGGA............................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0
...................................................TACTTCCCATATTACTTATCTGTATGAGA.......................................................................... 29 0 2 0.50 1 0 0 0 0 0 0 1
.................................................................................AAGCAATTTGGGAAGTATGTG.................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................................AAGCAATTTGGGTAGTATGTG.................................................... 21 2 2 0.50 1 0 0 0 0 1 0 0
........................................................................................................................GTCCTGGTCTGGAATTATTGTATTTACT...... 28 2 2 0.50 1 0 0 0 0 0 1 0
.......................TTCATTGGACATTGGTGACATATTG.......................................................................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0
...............................................................................ATAAGTAATTTGGGAGGTATG...................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
..................................................................................AGTAATTTGGGAATTATGTG.................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0
....................TACTTCATTGGACATTGGTGACATA............................................................................................................. 25 0 2 0.50 1 0 0 1 0 0 0 0
..................................................ATACTTCCCATATTACTTATC................................................................................... 21 0 10 0.30 3 0 0 1 0 0 2 0
.................................................................................AAGTAGTTTGTGTAGTATGTGA................................................... 22 3 4 0.25 1 0 0 0 1 0 0 0
..................................................ATACTTCCCATATTACTTAT.................................................................................... 20 0 20 0.20 4 0 0 4 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATTGA.................................................... 21 3 7 0.14 1 0 0 1 0 0 0 0
....GGTCTACTTCAACATTTAC................................................................................................................................... 19 2 8 0.13 1 0 0 0 1 0 0 0
..................................................ATACTTCCCATATTACTTATCT.................................................................................. 22 0 10 0.10 1 0 0 1 0 0 0 0
......................................................TTCCCATATTACTTATCTGTATG............................................................................. 23 0 10 0.10 1 0 0 1 0 0 0 0
..................................................ATAATTCCCATATTACTTATCT.................................................................................. 22 1 11 0.09 1 0 0 1 0 0 0 0
.................................................................................AAGTAATTTGGGAAGTATGTGG................................................... 22 1 11 0.09 1 1 0 0 0 0 0 0
..................................................TGACTTCCCATATTACTTATC................................................................................... 21 2 12 0.08 1 0 0 0 0 0 1 0
...................................................TACTTCACATATTACTTATC................................................................................... 20 1 12 0.08 1 0 0 1 0 0 0 0
.................................................................................AAGTAATCTGGGAAGTATGT..................................................... 20 1 13 0.08 1 0 0 1 0 0 0 0
.....GTTTGCTTGAATATTTACT.................................................................................................................................. 19 2 15 0.07 1 0 0 0 1 0 0 0
.................................................................................AAGTAATTTGGGAAGTATATG.................................................... 21 1 16 0.06 1 0 1 0 0 0 0 0
...............................................................................ATAAGTAATCTTGGTAGTATG...................................................... 21 3 16 0.06 1 0 0 0 1 0 0 0

Anti-sense strand reads

TCATCCAAATGAAGTTATAAATGAAGTAACCTGTAACCACTGTATACCAGTATGAAGGGTATAATGAATAGACATACTCTATTCATTAAACCCTTCATACACTGTAGCGAATTGAGAGAACCAGACCAGACCTTAATAACATAAATGAAAATTA

************************************.(((((....((..(((((((((((.(((((((((((.....))))))))))).)))))))))))...)))))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 V040

embryo

 V107

male body
....CCAAATGAAGTTATAAATGAAGTAA............................................................................................................................. 25 0 1 1.00 1 1 0 0
.............................................................................................................AATTGAGAGAACCAGACCAGACCT..................... 24 0 1 1.00 1 1 0 0
...........................AACCTGTAACCACTGTATACCAGTAT..................................................................................................... 26 0 2 0.50 1 1 0 0
..........................................ATTACCAGTATGAAGGGTATAATGA....................................................................................... 25 2 2 0.50 1 0 1 0
................................................AGTATGAAGGGTATAATGAAT..................................................................................... 21 0 2 0.50 1 1 0 0
..................................AACCACTGTATACCAGTATGAAGGG............................................................................................... 25 0 2 0.50 1 1 0 0
..............................................CCAGTATGAAGGGTATAATGAAT..................................................................................... 23 0 2 0.50 1 0 0 1
.....................................................GAAGGGTATAATGAATAGACATACT............................................................................ 25 0 10 0.10 1 1 0 0
.................................................GTATGATGGTTCTAATGAATA.................................................................................... 21 3 16 0.06 1 0 1 0
..............................................CCAGAATGAAGGGTAGTAT......................................................................................... 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_1361:4317-4470 - der_210 confident A---------GTAGGTTTACTTCAATATTTACTTCATTGGACATTGGTG----------------------------ACATATGGTCATACTTC----CCATATTACTTATCTGTAT---------GA-GAT--AAGTAA-TTTG------GGAAGTATGTGACATCGCTT-A---ACTCTCTTGGTCTGGTC--TGG------AATT---ATTGTATTTACTTTTAAT---
droYak3 v2_chrUn_5527:8492-8623 - A---------TTGGGTTTACTTCGATGTTGCTTCA-TTTGAACATGGTG----------------------------ATAAGTGGTAACATGCA----ACTA---------------------------------AGCAT-TATT------AGAAATATATTGCGTACTTT-G---CGCTTCACTGGCTGGTC--TGG------AATT---ATCGTATTTACTCTTATT---
droSec2 scaffold_1084:9787-9918 + A---------TTGGGTTTACTTCGATATTGCTGCA-TTTAACCATGGTG----------------------------ATAAATGATAAGATGCA----ACTA---------------------------------AGCAT-TACT------AGGAATGTGCTGTGTGTTTT-C---TTCTTCATTGGTCGTTC--TGG------AATT---ATCGTATTTACTTTTATT---
droSim2 node_15741:508-639 - A---------TTGGGTTTACTTCAATATTGCTGCA-TTTAACCATGGTG----------------------------ATAAATGATAACATGCA----ACTA---------------------------------AGCAT-TATT------AGGAATGTTATGTGTATCTT-G---CTCTTCATTGGTTGGTC--TGG------AATT---ATCGTATTTACTCTTATT---
dm3 chrU:1506065-1506193 + A---------T------TACTTCGATATTGCTGCA-TTTGACCATGGTG----------------------------ATAAGTGGTAACATTGA----ACTA----------------------------AT--AAGCCA-TATT------AGAAATATGTAACGTACTTT-A---CGCTTCTTTGGCCGGTC--TGG------AATT---ATTGTATTTGCTCTTATT---
droEug1 scf7180000407429:5128-5256 - A---------TCGGGTTTATCTCCATACTTTGTCC--------------GTTAGTT------ATTGCTGC---------------TAACT---GGATTA----------------CTAAG---------------ATGA-TTACG------TGTAGTAGGTTGGTCTTCTT-C---TTCTTCTTCAGATCTTC--TGG------AATT---ATCGTATTTGCTTTTATT---
droBia1 scf7180000302222:2691-2825 + A---------TAGGGTTTATCTCAATACTTTGTCC--------------GATTGTC------AATTGAATTACAG------------------TTGCTA----------------ATACAATAGAGAAACTT---ATTGGTTTC----------------ATTGGTCCGTT-C---GTTTCCTTCCTTTGGCC--TGG------GATTATTATCATATTTGCTCTTATT---
droTak1 scf7180000415049:9611-9761 - AA--------TAGGGTTTATTTCAATGCTCTGCCC--------------GATTGTT------AGTTGAATTATAG------------------TTGTTA----------------GTATTATGAAGAA-GGT-C-ATTG-TTTTCATTAAGTTGTTGTTGTTGGGTCCGTT-C---ATTTTCTTCTGCTTGCC--TGG------AATTATCATCGTATTTACTTTTATT---
droEle1 scf7180000489511:311-449 + A---------TCGGATTTATCTCAATGTTTTGTCC--------------CATTGCC------ATTTTAGTTATAG------------------TCAATA----------------AAATTATC---GA-CAGAG-ATAA-TTTTA------AACAGATTGTTGTGCTCTTT-G---GTTTCCTTCTGCTTCCC--TGG------AATT---ATCGTATTTACTTTTATT---
droRho1 scf7180000773232:398-539 + -----------TGGGTTGATCTCAATATTTTGTCC--------------CATTGTA------ATTTGAATTAAAG------------------TTGATA----------------TTATTAAAAATAA-AGT-G-ATGA-TCATATTTGTGTTG---TCTTTGTAGTTTTT-G---GTTTCCTTAGGTTGGTC--TGG------AATT---ATTATATTTACTTCTATT---
droFic1 scf7180000453068:3975-4118 + A---------TTGGATTTATTTCGATACTTTGTCT--------------TTTCGCC------ATTTGAATCGAAG------------------TGGCTA----------------AAATGATCATAAA-CAT--ACAAA-TTTTA------TAGAGGTTGTTTCATCCATT-C---AGTTTCTTCCGTTTGTC--TGG------AATT---ATTATATTTACTGTCATTAAT
droKik1 scf7180000298521:632-760 + A---------TCGGGTTTATTTCGATGTTACTCCC--------------TTGGACC------ATATGAATCATGG---------GAATCATACA----TATC---------------------------------TGCAA-GATT------GGAAGTATTAGC---CGTTT-A---CATTTCTTCGTCGGGTC--TGG------AAGT---ATCGTATTTGCTTTTGTT---
droAna3 scaffold_691:831-963 + AA--------TTGGATTGATATCTATGTTCTGACA--------------CATGGCG------TGATATATAAGAC------------------ATAATA----------------AAGTTATTATATA-AAA-G-ATAA-TTTTA------TTAAGCT---------GGGTTA----TCTTCCGGTGGAAATC--TGG------AATT---ATTATATTTGCTGGTATT---
droBip1 scf7180000395855:8913-9053 + A---------TCGGATTTATTTCGATGTTTTGTCC--------------ATTCGTC------ATTTGGATTGAAG------------------TAGTTA----------------ATATAATCATAAA-CAT--AATAA-TTTTA------TAGAGGTTGTTGAATCCATT-A---GGTTTCTTTTGTTTGTC--TGG------AATT---GTTATATTTACTTTTATT---
dp5 Unknown_singleton_1458:11146-11285 - CA--------TAGGATTTATTTCTATGTTTTGGCC--------------CTGTGCC------ATTACGATGGTAA------------------TTATGA----------------GGAAGATGAGGAT-TA----AAAA-TTGTT------TTGAAGTTCGCCGATTCCATTA----ACTTCCTCGGTTTCTC--TGG------AATT---ATTATATTTGCTTGTATT---
droPer2 scaffold_9123:271-411 + AA--------TAGAATTTAATTCTATGTTTTGGCC-C------------CTGTGCC------ATTTCCGAT--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--TTTAA-TTGTG------TTGAACTTCGCCGATTCCATTA----ACTTCCTCGGTTTCTC--TGG------AATT---ATTATATTTGCTTCTATT---
droWil2 scf2_1100000004932:56224-56354 + GGTGCTTTTACTGGGTTTATGTCAATGGATTGGCT--------------GCATGTT------GTTTTTAATGTTA------------------AAAGTA----------------GCATAATG---CA-CAA--AAAAG-TCATC------TTGAG----------------------------TTGTTGACCTTTAATTAATTAATT---GTCGTATTTGCTTTTATT---
droVir3 scaffold_4701:719-859 + A---------TAGGAATTATTTCAATACTTTGTGC--------------ATTTATA---------TGGTTTACAGTTATTGATAGTAATATATT----AATA---------------------------------ATTA----GTTT-A--AGCTGGTGCCTGTATGTTTT-GATCGCTGTCTGTTGTTGACC--TGT------AATT---GTTATATTTTCTTTGATT---
droMoj3 scaffold_1774:724-829 + A---------TTGGGTTGATTTCGATGCTTTGATT--------------GAGGGTG------GG---------------AGATGCCAATG---ATAAAA----------------CTGATAGTAGTAA-TAT-G-GTGA-TT-------------------------------------------------TC--TGA--AATTAATT---GTCGTATTTACTTTCGTT---
droGri2 scaffold_15124:75070-75201 - A---------CTTTGTTTATTTCTATATTTTGGGT--------------ATTACTCTGAGTTATTGTTAGT------------------GTTGG----TATT---------------------------------ATCAT-TATT------AGCAGATGGACCGGTAGATG-A---ATCTTCCGTAGTTGACC--TGA------AATTATTGTTATATTTGATTATGTT---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
A---------GTAGGTTTACTTCAATATTTACTTCATTGGACATTGGTG----------------------------ACATATGGTCATACTTC----CCATATTACTTATCTGTAT---------GA-GAT--AAGTAA-TTTG------GGAAGTATGTGACATCGCTT-A---ACTCTCTTGGTCTGGTC--TGG------AATT---ATTGTATTTACTTTTAAT---SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTGA.....................................................................221711.007111032884761140
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTG......................................................................211261.0026140045134780
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGTGA.....................................................................231159.0015917011116240
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGTG......................................................................221159.0015915103103370
..................................................................................................................................AT--AAGTAA-TTTG------GGAAGTATG........................................................................21176.0076500249200
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATG........................................................................20154.005451014250
..................................................................................................................................AT--AAGTAA-TTTG------GGAAGTATGT.......................................................................22144.004431132790
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGT.......................................................................21141.004151112670
.......................................................................................................................................AGTAA-TTTG------GGAAGTATGTGA.....................................................................21137.0037170011360
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGT.......................................................................20130.003070001760
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTGAA....................................................................23127.0027131021100
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTGAC....................................................................23126.002671001350
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTGT.....................................................................22120.002000001550
.......................................................................................................................................AGTAA-TTTG------GGAAGTATGTGAC....................................................................22118.001831001040
......................................................................................................................................AAGTAA-TTTG------GGAAGTATG........................................................................19116.001610001230
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGTT......................................................................22112.00124000800
..................................................................................................................................AT--AAGTAA-TTTG------GGAAGTAT.........................................................................20111.001110001000
..................................................................................................................................AT--AAGTAA-TTTG------GGAAGTATGTG......................................................................23110.00101000540
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGTGAC....................................................................24110.00100200710
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGTGT.....................................................................2319.0091000620
.......................................................................................................................................AGTAA-TTTG------GGAAGTATGTG......................................................................2018.0084000400
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGTGAA....................................................................2417.0072000500
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTAT.........................................................................1916.0061000500
.......................................................................................................................................AGTAA-TTTG------GGAAGTATGTGAA....................................................................2215.0052000210
.......................................................................................................................................AGTAA-TTTG------GGAAGTATGTGACA...................................................................2315.0050001310
......................................................................................................................................AAGTAA-TTTG------GGAAGTAT.........................................................................1812.0021000100
........................................................................................................................................GTAA-TTTG------GGAAGTATGTGA.....................................................................2012.0021000100
.........................................................................................................................................TAA-TTTG------GGAAGTATGTG......................................................................1812.0020000110
..................................................................................................................................AT--AAGTAA-TTTG------GGAAGTATGTGA.....................................................................2412.0020000110
.....................................................................................................................................................................TCGCTT-A---ACTCTCTTGGTCTGGT........................................2311.0011000000
.........................................................................................................................................TAA-TTTG------GGAAGTATGTGA.....................................................................1911.0010000010
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGTGC.....................................................................2311.0011000000
............................TTACTTCATTGGACATTGGTG----------------------------ACA........................................................................................................................................................2421.0022000000
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTT......................................................................2111.0010000100
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGTGACT...................................................................2511.0011000000
..................................................................................................................................AT--AAGTAA-TTTG------GGAAGTATGTT......................................................................2311.0010000100
..............................................................................................................................................................TGTGACATCGCTT-A---ACTCTCTTGG..............................................2411.0011000000
..........................................................................................................................................AA-TTTG------GGAAGTATGTGA.....................................................................1811.0011000000
........................................................................................................................................GTAA-TTTG------GGAAGTATGTG......................................................................1911.0011000000
.................................................................................................................................................................GACATCGCTT-A---ACTCTCTTGGTCTGG.........................................2611.0011000000
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTGACT...................................................................2411.0010000010
........................................................................................................................................GTAA-TTTG------GGAAGTATGTGACA...................................................................2211.0010000010
........................................................................................................................................GTAA-TTTG------GGAAGTATGTGAT....................................................................2111.0011000000
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTGAT....................................................................2311.0010000100
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTGATT...................................................................2411.0010000100
.................................................................................................................................GAT--AAGTAA-TTTG------GGAAGTATG........................................................................2211.0010000100
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGTGAT....................................................................2411.0010000010
................................................................................................................................................................TGACATCGCTT-A---ACTCTCTTGGTC............................................2411.0011000000
.......................................................................................................................................AGTAA-TTTG------GGAAGTATGT.......................................................................1911.0010000010
.......................................................................................................................................AGTAA-TTTG------GGAAGTATGTGAT....................................................................2211.0010000100
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTA......................................................................2111.0010000100
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTGC.....................................................................2211.0010000100
.......................................................................................................................................AGTAA-TTTG------GGAAGTATGTGACT...................................................................2311.0010000100
...............................................................................................................CTGTAT---------GA-GAT--AAGTAA-TTTG------GGAA.............................................................................2520.5011000000
................................................................................................................................................G------GGAAGTATGTGACATCGCT..............................................................2020.5011000000
...................................................................................................................................T--AAGTAA-TTTG------GGAAGTATGG.......................................................................2120.5011000000
.....................................................................................TCATACTTC----CCATATTACTTAT.........................................................................................................................2220.5010100000
..................................................................................................................TAT---------GA-GAT--AAGTAA-TTTG------GGA..............................................................................2120.5010000100
........................................................................................TACTTC----CCATATTACTTATCTGTAT---------GA-GA.....................................................................................................2920.5010000001
.............................TACTTCATTGGACATTGGTG----------------------------ACATA......................................................................................................................................................2520.5011000000
.......................................................................................ATACTTC----CCATATTACTTATC........................................................................................................................21100.3031200000
.......................................................................................ATACTTC----CCATATTACTTAT.........................................................................................................................20200.2044000000
......................................................................................................................................AAGTAA-TTTG------GGAAGTATTGA......................................................................2170.1411000000
.......................................................................................ATACTTC----CCATATTACTTATCT.......................................................................................................................22100.1011000000
...........................................................................................TTC----CCATATTACTTATCTGTAT---------G.........................................................................................................23100.1011000000
......................................................................................................................................AAGTAA-TTTG------GGAAGTATGTGG.....................................................................22110.0910000100
droYak3
A---------TTGGGTTTACTTCGATGTTGCTTCA-TTTGAACATGGTG----------------------------ATAAGTGGTAACATGCA----ACTA---------------------------------AGCAT-TATT------AGAAATATATTGCGTACTTT-G---CGCTTCACTGGCTGGTC--TGG------AATT---ATCGTATTTACTCTTATT---SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................................................................................................................................TTCACTGGCTGGTC--TGG------AATT---ATC..................2411.00100100000000
...............................................................................................................................................TT------AGAAATATATTGCGTACTTT-G---CGC.....................................................26200.15303000000000
..................................................................................TGGTAACATGCA----ACTA---------------------------------AG...............................................................................................18170.06100100000000
................................................................................................................................................T------AGAAATATATTGCGTACTTT-G---CGCC....................................................26200.05100100000000
.............................................................................................................................................TATT------AGAAATATATTGCGTACTTT-............................................................24200.05100100000000
droSec2
A---------TTGGGTTTACTTCGATATTGCTGCA-TTTAACCATGGTG----------------------------ATAAATGATAAGATGCA----ACTA---------------------------------AGCAT-TACT------AGGAATGTGCTGTGTGTTTT-C---TTCTTCATTGGTCGTTC--TGG------AATT---ATCGTATTTACTTTTATT---SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................TACTTCGATATTGCTGCA-TTTAACCA............................................................................................................................................................................................26201.152322010
...........TGGGTTTACTTCGATATTGCTGCA-TT..................................................................................................................................................................................................26200.551111000
.......................................................................................................................................................................................TTGGTCGTTC--TGG------AATT---ATCGTATTTAC..........2820.5011000
....................................................................................................................................................................................TCATTGGTCGTTC--TGG------AATT---ATCGTATT.............2820.5011000
...................................................................................................................................................................................TTCATTGGTCGTTC--TGG------AATT---ATCGTAT..............2820.5011000
......................................................................................................................................................................................ATTGGTCGTTC--TGG------AATT---ATCGTATT.............2620.5010001
................................................................................................................................................T------AGGAATGTGCTGTGTGTTTT-C---TT......................................................2420.5011000
..............GTTTACTTCGATATTGCTGCA-....................................................................................................................................................................................................21200.3577000
...........................................................................................................................................T-TACT------AGGAATGTGCTGTGTGTTTT-............................................................2530.3310100
.................................................................................................................................................................................TCTTCATTGGTCGTTC--TGG------............................1930.3311000
.................................................................................................................................................................................TCTTCATTGGTCGTTC--TGG------AATT---ATC..................2630.3310001
..................................................................................................ACTA---------------------------------AGCAT-TACT------AGGAATGTGC.......................................................................2360.3322000
.....................................................................................TAAGATGCA----ACTA---------------------------------AGCAT-TACT------AGGAA............................................................................2760.3322000
.................TACTTCGATATTGCTGCA-TTTAAC..............................................................................................................................................................................................24200.3066000
................TTACTTCGATATTGCTGCA-TT..................................................................................................................................................................................................21200.3065001
......................................TAACCATGGTG----------------------------ATAAATGATAAGATGC...........................................................................................................................................27100.3033000
.........................TATTGCTGCA-TTTAACCATGG.........................................................................................................................................................................................21200.2555000
.................TACTTCGATATTGCTGCA-TTTAACC.............................................................................................................................................................................................25200.2555000
...............................................TG----------------------------ATAAATGATAAGATGCA----ACTA---------------------------------AGC..............................................................................................26140.2133000
............GGGTTTACTTCGATATTGCTG.......................................................................................................................................................................................................21200.2044000
.................TACTTCGATATTGCTGCA-TTTAACCAT...........................................................................................................................................................................................27200.2044000
..........TTGGGTTTACTTCGATATTGCTGCA-TT..................................................................................................................................................................................................27200.2044000
.......................................AACCATGGTG----------------------------ATAAATGATAAGATGCA----......................................................................................................................................27100.2021100
................................................................................................................................................................................................C--TGG------AATT---ATCGTATTTACTT........21160.1933000
...................................................................................................CTA---------------------------------AGCAT-TACT------AGGAATGTG........................................................................2160.1711000
....................TTCGATATTGCTGCA-TTTAACCATGG.........................................................................................................................................................................................26200.1533000
..................ACTTCGATATTGCTGCA-TTTAACCA............................................................................................................................................................................................25200.1533000
....................TTCGATATTGCTGCA-TTTAAC..............................................................................................................................................................................................21200.1533000
....................TTCGATATTGCTGCA-TTTAACCATGGTG----------------------------A..........................................................................................................................................................29200.1533000
A---------TTGGGTTTACTTCGATATTGCTGCA-TT..................................................................................................................................................................................................28200.1533000
............................TGCTGCA-TTTAACCATGGTG----------------------------ATAAA......................................................................................................................................................25200.1533000
...............TTTACTTCGATATTGCTGCA-T...................................................................................................................................................................................................21200.1532100
......................CGATATTGCTGCA-TTTAACCATGGTG----------------------------A..........................................................................................................................................................27200.1532001
...............................................................................................................................................................................................TC--TGG------AATT---ATCGTATTTACT.........21200.1533000
............................................TGGTG----------------------------ATAAATGATAAGATGC...........................................................................................................................................21140.1422000
.............................................................................ATAAATGATAAGATGCA----ACTA---------------------------------.................................................................................................21140.1422000
............................................TGGTG----------------------------ATAAATGATAAGATGCA----AC....................................................................................................................................24140.1421001
........................................ACCATGGTG----------------------------ATAAATGATAAGATGCA----AC....................................................................................................................................28100.1011000
............................................................................................................................................................................................................AATT---ATCGTATTTACTTTTATT---22200.1022000
..................ACTTCGATATTGCTGCA-TTTA................................................................................................................................................................................................21200.1022000
..................................A-TTTAACCATGGTG----------------------------ATAAATG....................................................................................................................................................21200.1022000
....................TTCGATATTGCTGCA-TTTAACCATGGT........................................................................................................................................................................................27200.1022000
....................................TTTAACCATGGTG----------------------------ATAAATGATAAGATGC...........................................................................................................................................29100.1011000
.....................................TTAACCATGGTG----------------------------ATAAATGATAAGA..............................................................................................................................................25100.1011000
...........TGGGTTTACTTCGATATTGCT........................................................................................................................................................................................................21200.1022000
.......................................AACCATGGTG----------------------------ATAAATGATAAGATGC...........................................................................................................................................26100.1011000
....................................TTTAACCATGGTG----------------------------ATAAATGATAAGA..............................................................................................................................................26100.1011000
.........................................CCATGGTG----------------------------ATAAATGATAAGATGCA----AC....................................................................................................................................27110.0910001
..............................................................................TAAATGATAAGATGCA----ACTA---------------------------------AGCAT-TA.........................................................................................27120.0811000
....................................................................................ATAAGATGCA----ACTA---------------------------------AGCAT-T..........................................................................................20130.0811000
..........................................CATGGTG----------------------------ATAAATGATAAGATGCA----ACT...................................................................................................................................27130.0811000
..........................................CATGGTG----------------------------ATAAATGATAAGATGCA----AC....................................................................................................................................26130.0811000
................................................G----------------------------ATAAATGATAAGATGCA----ACTA---------------------------------AGC..............................................................................................25140.0711000
...........................................ATGGTG----------------------------ATAAATGATAAGATG............................................................................................................................................21140.0711000
............................................TGGTG----------------------------ATAAATGATAAGATGCA----ACT...................................................................................................................................25140.0710010
...........................................ATGGTG----------------------------ATAAATGATAAGATGCA----ACTA---------------------------------.................................................................................................27140.0711000
...............................................................................AAATGATAAGATGCA----ACTA---------------------------------AG...............................................................................................21140.0711000
...............................................TG----------------------------ATAAATGATAAGATGCA----ACTA---------------------------------AGCA.............................................................................................27140.0711000
..............................................................................TAAATGATAAGATGCA----ACTA---------------------------------.................................................................................................20140.0711000
.............................................................................ATAAATGATAAGATGCA----ACT...................................................................................................................................20140.0711000
...............................................TG----------------------------ATAAATGATAAGATGCA----ACTA---------------------------------AGCAT-...........................................................................................28140.0711000
..............................................................................TAAATGATAAGATGCA----ACTA---------------------------------AGCAT-...........................................................................................25140.0711000
............................................TGGTG----------------------------ATAAATGATAAGATGCA----ACTA---------------------------------.................................................................................................26140.0711000
..............................................GTG----------------------------ATAAATGATAAGATGCA----ACTA---------------------------------AGCA.............................................................................................28140.0711000
...............................................TG----------------------------ATAAATGATAAGATGC...........................................................................................................................................18150.0711000
.............................................................................................................................................................................................GTTC--TGG------AATT---ATCGTATTTACTTT.......25160.0611000
.............................................................................................................................................................................................GTTC--TGG------AATT---ATCGTATTTACTT........24160.0611000
...................................................................................................................................................................................................TGG------AATT---ATCGTATTTACTTT.......21170.0611000
...............TTTACTTCGATATTGCTGCA-TTTAA...............................................................................................................................................................................................25200.0510010
............................TGCTGCA-TTTAACCATGGTG----------------------------ATAAATG....................................................................................................................................................27200.0511000
.....................TCGATATTGCTGCA-TTTAACCATGGTA----------------------------...........................................................................................................................................................27200.0511000
...............TTTACTTCGATATTGCTGCA-....................................................................................................................................................................................................20200.0511000
....................................TTTAACCATGGTG----------------------------ATAAATGA...................................................................................................................................................21200.0511000
.............................GCTGCA-TTTAACCATGGTG----------------------------ATA........................................................................................................................................................22200.0511000
...............................TGCA-TTTAACCATGGTG----------------------------AT.........................................................................................................................................................19200.0511000
................TTACTTCGATATTGCTGCA-TTT.................................................................................................................................................................................................22200.0511000
.........................TATTGCTGCA-TTTAACCATGGTG----------------------------ATAAA......................................................................................................................................................28200.0511000
......................CGATATTGCTGCA-TTTAACCA............................................................................................................................................................................................21200.0511000
.....................................TTAACCATGGTG----------------------------ATAAATGA...................................................................................................................................................20200.0511000
...............................TGCA-TTTAACCATGGTG----------------------------ATA........................................................................................................................................................20200.0511000
..................ACTTCGATATTGCTGCA-TTTAA...............................................................................................................................................................................................22200.0511000
..............GTTTACTTCGATATTGCTGC......................................................................................................................................................................................................20200.0511000
.................TACTTCGATATTGCTGCA-TTTAA...............................................................................................................................................................................................23200.0511000
............................TGCTGCA-TTTAACCATGGTG----------------------------ATAAATGA...................................................................................................................................................28200.0511000
..........TTGGGTTTACTTCGATATTGCT........................................................................................................................................................................................................22200.0511000
....................TTCGATATTGCTGCA-TTTAACC.............................................................................................................................................................................................22200.0511000
..................ACTTCGATATTGCTGCA-TTTAACC.............................................................................................................................................................................................24200.0511000
...............TTTACTTCGATATTGCTGCA-TTTAACCAT...........................................................................................................................................................................................29200.0511000
................................................................................................................................................................................................C--TGG------AATT---ATCGTATTTACT.........20200.0511000
.............................GCTGCA-TTTAACCATGGTG----------------------------AT.........................................................................................................................................................21200.0511000
...........................TTGCTGCA-TTTAACCATGGTG----------------------------ATAAA......................................................................................................................................................26200.0511000
...................CTTCGATATTGCTGCA-TTTA................................................................................................................................................................................................20200.0511000
..................ACTTCGATATTGCTGCA-TTTAACCAT...........................................................................................................................................................................................26200.0511000
...........TGGGTTTACTTCGATATTGCTGCA-TTT.................................................................................................................................................................................................27200.0511000
droSim2
A---------TTGGGTTTACTTCAATATTGCTGCA-TTTAACCATGGTG----------------------------ATAAATGATAACATGCA----ACTA---------------------------------AGCAT-TATT------AGGAATGTTATGTGTATCTT-G---CTCTTCATTGGTTGGTC--TGG------AATT---ATCGTATTTACTCTTATT---SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..............................................................................................................................................ATT------AGGAATGTTATGTGTATC...............................................................21178.007800001071600420111000
...........................................................................................................................................T-TATT------AGGAATGTTATGTGTA.................................................................21164.00640000002125017028000
................................................................................................................................................T------AGGAATGTTATGTGTATCTT-............................................................21153.0053000100101100170311000
...................................................................................................CTA---------------------------------AGCAT-TATT------AGGAATGTT........................................................................21148.004820100016120116000000
.......................................................................................................................................................AGGAATGTTATGTGTATCTT-G---........................................................21147.00470001000100180126000
..........................................................................................TGCA----ACTA---------------------------------AGCAT-TATT------AGGA.............................................................................21144.00440000001628000000000
................................................................................................................................................................................................C--TGG------AATT---ATCGTATTTACTC........21143.004300000014100011044000
..........................................................................................................................................AT-TATT------AGGAATGTTATGTGT..................................................................21136.0036000000380024001000
...................................................................................................................................................................TGTATCTT-G---CTCTTCATTGGT............................................21124.0024000000714003000000
.................................................................................................................................................................TGTGTATCTT-G---CTCTTCATTG..............................................21123.0023000021010001000000
....................................................................................................................................................................GTATCTT-G---CTCTTCATTG..............................................18121.0021000021000000000000
.............................................................................................................................................TATT------AGGAATGTTATGTGTAT................................................................21119.0019000000120030112000
....................................................................................................................................................................GTATCTT-G---CTCTTCATTGGTC...........................................21119.0019000114002002000000
...............................................................................................................................................TT------AGGAATGTTATGTGTATCT..............................................................21118.001800000038005002000
............................................TGGTG----------------------------ATAAATGATAACATGC...........................................................................................................................................21115.0015000014000001000000
.............................GCTGCA-TTTAACCATGGTG----------------------------AT.........................................................................................................................................................21115.001500010800005001000
.....................................................................................................................................................................TATCTT-G---CTCTTCATTGGTC...........................................20114.0014000001400000000000
......................................................................................................................................................................ATCTT-G---CTCTTCATTGGTC...........................................19114.0014000014000000000000
..............................................................................................................................................................................................GTC--TGG------AATT---ATCGTATTTAC..........21113.001300000023007010000
..............GTTTACTTCAATATTGCTGCA-....................................................................................................................................................................................................21113.001300010034005000000
..............................................................................................................................................................TTATGTGTATCTT-G---CTCTTCA.................................................21110.001000010002007000000
................................GCA-TTTAACCATGGTG----------------------------ATA........................................................................................................................................................19110.0010000010000000000000
.........................TATTGCTGCA-TTTAACCATGG.........................................................................................................................................................................................21110.001000000027010000000
.........................................................................................................................................CAT-TATT------AGGAATGTTATGTG...................................................................2119.00900000010014021000
....................................TTTAACCATGGTG----------------------------ATAAA......................................................................................................................................................1819.00900009000000000000
...........................TTGCTGCA-TTTAACCATGGTG----------------------------...........................................................................................................................................................2119.00900000044001000000
...........TGGGTTTACTTCAATATTGCT........................................................................................................................................................................................................2119.00900000001017000000
...............................................................................................................................................................................................TC--TGG------AATT---ATCGTATTTACT.........2119.00900000023004000000
.......................................................................................................................................AGCAT-TATT------AGGAATGTTATG.....................................................................2119.00900000000009000000
................................................G----------------------------ATAAATGATAACATGCA----ACT...................................................................................................................................2119.00900007001001000000
.....................................................................................TAACATGCA----ACTA---------------------------------AGCAT-TATT------AGGA.............................................................................2618.00800000051110000000
..............................................................................................................................................ATT------AGGAATGTTATGTGTAT................................................................2018.00800000000001034000
...........................................ATGGTG----------------------------ATAAATGATAACATGC...........................................................................................................................................2218.00800007000001000000
...........................................................................................................................................T-TATT------AGGAATGTTATGTGTATCTT-G---C.......................................................2718.00800000034001000000
.............................................................................ATAAATGATAACATGCA----ACTA---------------------------------A................................................................................................2217.00700007000000000000
............................TGCTGCA-TTTAACCATGGTG----------------------------A..........................................................................................................................................................2117.00700000013020010000
...........................................................................................................................................T-TATT------AGGAATGTTATGTGT..................................................................2017.00700010011002002000
.............................................................................................................................................................GTTATGTGTATCTT-G---CTCTTC..................................................2117.00700000000007000000
...............................................................................................................................................TT------AGGAATGTTATGTGTATCTT-G---CTC.....................................................2617.00700000021103000000
.........................................................................................................................................................................TT-G---CTCTTCATTGGTTGG.........................................1817.00700007000000000000
................................................G----------------------------ATAAATGATAACATGCA----AC....................................................................................................................................2017.00700007000000000000
........................................ACCATGGTG----------------------------ATAAATGATAACA..............................................................................................................................................2217.00700007000000000000
..........................................CATGGTG----------------------------ATAAATGATAACAT.............................................................................................................................................2117.00700007000000000000
...................................................................................................................................................................................................TGG------AATT---ATCGTATTTACTC........2017.00700000011100004000
.............................................................................ATAAATGATAACATGCA----ACT...................................................................................................................................2017.00700007000000000000
..........................................................................................................................................................AATGTTATGTGTATCTT-G---CTC.....................................................2117.00700000000007000000
............................................................................................................................................................TGTTATGTGTATCTT-G---CTCTT...................................................2116.00600000000006000000
.........................................................................................................................................................GAATGTTATGTGTATCTT-G---CT......................................................2116.00600000020004000000
...................................................................................................................................................................TGTATCTT-G---CTCTTCATTGG.............................................2016.00600010032000000000
...................................................................................................................................................................................................TGG------AATT---ATCGTATTTACTCT.......2115.00500000000000005000
.......................................................................................................................................................AGGAATGTTATGTGTATC...............................................................1815.00500001000003001000
.....................................................................................................A---------------------------------AGCAT-TATT------AGGAATGTTATG.....................................................................2215.00500000000005000000
................................................................................................................................................................ATGTGTATCTT-G---CTCTTCATT...............................................2115.00500010021001000000
..........................................................................................................................................AT-TATT------AGGAATGTTATGTGTA.................................................................2215.00500000013000001000
.................TACTTCAATATTGCTGCA-TTT.................................................................................................................................................................................................2115.00500000000000005000
.............................................................................................................................................................................................................ATT---ATCGTATTTACTCTTATT---2115.00500010004000000000
...........................................................................................................................................T-TATT------AGGAATGTTATGTGTAT................................................................2215.00500000001000004000
.....................................................................................................................................................................................................G------AATT---ATCGTATTTACTCTTA.....2114.00400000022000000000
.......................................................................................................................................................AGGAATGTTATGTGTATCTT-G---T.......................................................2214.00400000000000004000
...........................................................................................................................................T-TATT------AGGAATGTTATGTG...................................................................1914.00400001000002001000
..............................................................................................................................................ATT------AGGAATGTTATGTGTATCT..............................................................2214.00400000002002000000
...........................................................................................................................................................ATGTTATGTGTATCTT-G---CTCT....................................................2114.00400001000003000000
....................................................................................................TA---------------------------------AGCAT-TATT------AGGAATGTT........................................................................2014.00400000000004000000
...........................................................................................................................................T-TATT------AGGAATGTTATGTGTATCTT-G---CTC.....................................................2914.00400000002200000000
.......................................................................................................................................................AGGAATGTTATGTGTATCTT-............................................................2014.00400000000001003000
....................................TTTAACCATGGTG----------------------------ATAAATGA...................................................................................................................................................2114.00400000031000000000
................................................................................................................................................T------AGGAATGTTATGTGTATCTT-G---........................................................2214.00400000000000004000
.................................................................................................................................................................TGTGTATCTT-G---CTCTTCATTGG.............................................2214.00400000022000000000
.............................................................................................................................................................................................GGTC--TGG------AATT---ATCGTATTTA...........2114.00400000022000000000
....................................................................................................TA---------------------------------AGCAT-TATT------AGGAATGTTATGTG...................................................................2514.00400000000004000000
...............................................................................................................................................TT------AGGAATGTTATGTGTATC...............................................................2014.00400000000001003000
...........................TTGCTGCA-TTTAACCATGGTG----------------------------A..........................................................................................................................................................2214.00400000003001000000
.......................................................................................................................................................AGGAATGTTATGTGTATCTT-G---C.......................................................2213.00300000000000021000
...............................................................................................................................................................................................TC--TGG------AATT---ATCGTATTTACTC........2213.00300000001001001000
........................................................................................................................................................................................TGGTTGGTC--TGG------AATT---ATCGTATTTAC..........2713.00300000000210000000
..............................................GTG----------------------------ATAAATGATAACATGCA----......................................................................................................................................2013.00300000021000000000
................................................................................................................................................T------AGGAATGTTATGTGTATCT..............................................................2013.00300000001000002000
.......................................................................................................................................................AGGAATGTTATGTGTATCTT-T---T.......................................................2213.00300000000000003000
..................................................................................................................................................................GTGTATCTT-G---CTCTTCATTGG.............................................2113.00300010011000000000
...........................................ATGGTG----------------------------ATAAATGATAACATG............................................................................................................................................2113.00300000000003000000
..........................................................................................................................................................AATGTTATGTGTATCTT-G---C.......................................................1913.00300002000001000000
.........................................................................................ATGCA----ACTA---------------------------------AGCAT-TATT------AGGA.............................................................................2213.00300000021000000000
............GGGTTTACTTCAATATTGCTG.......................................................................................................................................................................................................2113.00300010000002000000
................................................................................................................................................T------AGGAATGTTATGTGTATCTT-T---........................................................2213.00300000000000003000
............................................................................................................................................................................................................AATT---ATCGTATTTACTCTTAT....2113.00300010000000002000
A---------TTGGGTTTACTTCAATATTG..........................................................................................................................................................................................................2113.00300000000003000000
.............................................................................ATAAATGATAACATGCA----ACTA---------------------------------.................................................................................................2113.00300000000000003000
................TTACTTCAATATTGCTGCA-TTTAACC.............................................................................................................................................................................................2613.00300003000000000000
.............................................................................................A----ACTA---------------------------------AGCAT-TATT------AGGAATGTTATG.....................................................................2613.00300000000102000000
....................................................................................................TA---------------------------------AGCAT-TATT------AGGAATGTTATGTGT..................................................................2613.00300000000003000000
..............................................................................................................................................................TTATGTGTATCTT-G---CTCTTCATTGGT............................................2613.00300000002100000000
...............................TGCA-TTTAACCATGGTG----------------------------ATAAATGA...................................................................................................................................................2513.00300000011000010000
...................CTTCAATATTGCTGCA-TTTA................................................................................................................................................................................................2013.00300000000000003000
................................................................................AATGATAACATGCA----ACTA---------------------------------AGC..............................................................................................2113.00300010011000000000
................................................................................................................................................T------AGGAATGTTATGTGTATCTT-G---CTC.....................................................2513.00300000000300000000
..........................................................................................................................................................AATGTTATGTGTATCTT-............................................................1713.00300000000003000000
....................................................................................................................................................................................................GG------AATT---ATCGTATTTACTCTT......2112.00200010010000000000
...................CTTCAATATTGCTGCA-TTTAA...............................................................................................................................................................................................2112.00200000000000011000
............................................................................................CA----ACTA---------------------------------AGCAT-TATT------AGGAAT...........................................................................2112.00200000000002000000
..........TTGGGTTTACTTCAATATTGC.........................................................................................................................................................................................................2112.00200000000001010000
..............................................................................................................................................................TTATGTGTATCTT-G---CTCTTC..................................................2012.00200000000002000000
............................................................................................................................................................................................TGGTC--TGG------AATT---ATCGTATTTACTCTTA.....2812.00200000000200000000
...............TTTACTTCAATATTGCTGCA-T...................................................................................................................................................................................................2112.00200000000001010000
......................CAATATTGCTGCA-TTTAACCA............................................................................................................................................................................................2112.00200000000001010000
..............................CTGCA-TTTAACCATGGTG----------------------------ATA........................................................................................................................................................2112.00200000000000002000
.....................TCAATATTGCTGCA-TTTAACC.............................................................................................................................................................................................2112.00200000001000010000
..........................ATTGCTGCA-TTTAACCATGGT........................................................................................................................................................................................2112.00200000001001000000
..........................................................................................................................................................AATGTTATGTGTATCTT-G---........................................................1812.00200000000002000000
............................................................................................................................................................TGTTATGTGTATCTT-G---CTCTTCATTGG.............................................2712.00200000000110000000
.........................................................................................................................................................GAATGTTATGTGTATCTT-G---C.......................................................2012.00200000000002000000
...................................................................................................................................................................TGTATCTT-G---CTCTTCATTGGTT...........................................2212.00200000000000002000
.............................................................................................................................................TATT------AGGAATGTTATGTGTATCTT-G---C.......................................................2612.00200000010001000000
..............................................................................................................................................ATT------AGGAATGTTATGTGTATCTT-G---CTC.....................................................2712.00200000011000000000
...............................................................................................................................................................................................TC--TGG------AATT---ATCGTATTTAC..........2012.00200000011000000000
.....................................TTAACCATGGTG----------------------------ATAAATGAT..................................................................................................................................................2112.00200000000002000000
..........................................................................................................................................AT-TATT------AGGAATGTT........................................................................1512.00200000000002000000
.............................................................................................................................................TATT------AGGAATGTTATGTGTATC...............................................................2212.00200000001001000000
.....................................................................................................................................................................................................G------AATT---ATCGTATTTACTCTTATT---2312.00200000002000000000
................TTACTTCAATATTGCTGCA-TT..................................................................................................................................................................................................2112.00200000010001000000
............................................................................................................................................................TGTTATGTGTATCTT-G---CTCTTCATTGGT............................................2812.00200000001001000000
............................................................................................................................................................................................TGGTC--TGG------AATT---ATCGTATTTACTCT.......2612.00200000000200000000
....................................................................................................TA---------------------------------AGCAT-TATT------AGGAATGTTATGTGTA.................................................................2712.00200000011000000000
...................................................................................................................................................................................TTCATTGGTTGGTC--TGG------AATT---ATCGTA...............2721.50300000000300000000
..............................................................................................................................................ATT------AGGAATGTTATGTGTA.................................................................1911.00100000000001000000
..................................................................................TGATAACATGCA----ACTA---------------------------------AGCAT-TATT------AGGA.............................................................................2911.00100000010000000000
...........................TTGCTGCA-TTTAACCATGGTG----------------------------T..........................................................................................................................................................2211.00100000000001000000
.............................................................................................................................................TATT------AGGAATGTTATGTGTA.................................................................2011.00100000001000000000
.........................................................................................................................................CAT-TATT------AGGAATGTTATGTGT..................................................................2211.00100000010000000000
.....................................................................................................................................................................................CATTGGTTGGTC--TGG------AATT---AT...................2121.00200000000200000000
..........TTGGGTTTACTTCAATATTGCTGC......................................................................................................................................................................................................2411.00100000001000000000
............................................................................................................................................................TGTTATGTGTATCTT-G---C.......................................................1711.00100000000001000000
..........................................................................................................................................AT-TATT------AGGAATGTTATGTGTAA................................................................2311.00100000001000000000
...........................................................................................................................................T-TATT------AGGAATGTTATGTGTATT...............................................................2311.00100000000000001000
..........................................................................................................................................AT-TATT------AGGAATGTTATGT....................................................................1911.00100000000001000000
.............GGTTTACTTCAATATTGCT........................................................................................................................................................................................................1911.00100000000001000000
...............................................................................................................................................................TATGTGTATCTT-G---CTCTTC..................................................1911.00100000000001000000
...................................................................................................................................................................................................TGG------AATT---ATCGTATTTACTCTT......2211.00100000000000010000
.................................................................................................................................................................TGTGTATCTT-G---CTCTTCATTGGT............................................2311.00100000001000000000
...............................................................................................................................................................................................TC--TGG------AATT---ATCGTATTTACTCTTAT....2611.00100000000100000000
....................................................................................................................................................................................TCATTGGTTGGTC--TGG------AATT---ATCGTA...............2621.00200000000200000000
...........................................................................................................................................................ATGTTATGTGTATCT..............................................................1511.00100000000001000000
...............................................................................................................................................TT------AGGAATGTTATGTGTAT................................................................1911.00100000000001000000
...........................................................................................................................................................ATGTTATGTGTATCTT-G---C.......................................................1811.00100000000001000000
....................TTCAATATTGCTGCA-TTTAACCATGG.........................................................................................................................................................................................2611.00100000000100000000
...........................................................................................................................................T-TATT------AGGAATGTTATGTGTATC...............................................................2311.00100000001000000000
dm3
A---------T------TACTTCGATATTGCTGCA-TTTGACCATGGTG----------------------------ATAAGTGGTAACATTGA----ACTA----------------------------AT--AAGCCA-TATT------AGAAATATGTAACGTACTTT-A---CGCTTCTTTGGCCGGTC--TGG------AATT---ATTGTATTTGCTCTTATT---SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
......................................TGACCATGGTG----------------------------ATAAGTGG...................................................................................................................................................19417.00680000000000000000000000000000000000000000000000000000000000000000000000000000152411170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GACCATGGTG----------------------------ATAAGTGG...................................................................................................................................................1843.5014000000000000000000000000000000000000000000000000000000000000000000000000000005270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TTGACCATGGTG----------------------------ATAAGTGG...................................................................................................................................................2042.5010000000000000000000000000000000000000000000000000000000000000000000000000000063010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TTCGATATTGCTGCA-TTTGACCATGGT........................................................................................................................................................................................2741.506000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001020000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................TATTGCTGCA-TTTGACCATGGTG----------------------------A..........................................................................................................................................................2441.255000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TGACCATGGTG----------------------------ATAAGTGGTA.................................................................................................................................................2140.753000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TACTTCGATATTGCTGCA-TTTGACCA............................................................................................................................................................................................2660.674000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TTCGATATTGCTGCA-TTTGACCATGG.........................................................................................................................................................................................2650.603000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................GATATTGCTGCA-TTTGACCATGGTG----------------------------A..........................................................................................................................................................2640.502000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CCGGTC--TGG------AATT---ATTGTA...............1920.501000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGCTGCA-TTTGACCATGGTG----------------------------ATAAGT.....................................................................................................................................................2650.402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........T------TACTTCGATATTGCTGCA-TTTGAC..............................................................................................................................................................................................2530.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........T------TACTTCGATATTGCTGCA-TTTGACC.............................................................................................................................................................................................2630.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TACTTCGATATTGCTGCA-TTTGACC.............................................................................................................................................................................................2560.332000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TGACCATGGTG----------------------------ATAAGTGGT..................................................................................................................................................2040.251000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCGATATTGCTGCA-TTTGACCATGGTG----------------------------A..........................................................................................................................................................2840.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CGATATTGCTGCA-TTTGACCATGGTG----------------------------A..........................................................................................................................................................2740.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TTCGATATTGCTGCA-TTTGACCATGGTG----------------------------...........................................................................................................................................................2840.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TTCGATATTGCTGCA-TTTGACCATG..........................................................................................................................................................................................2550.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TTGCTGCA-TTTGACCATGGTG----------------------------ATAAGT.....................................................................................................................................................2750.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TTGCTGCA-TTTGACCATGGTG----------------------------...........................................................................................................................................................2150.201000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CA-TTTGACCATGGTG----------------------------ATAAGT.....................................................................................................................................................2150.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.................TACTTCGATATTGCTGCA-TTTGACCATG..........................................................................................................................................................................................2850.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCGATATTGCTGCA-TTTGACCATGG.........................................................................................................................................................................................2550.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TTGCTGCA-TTTGACCATGGTG----------------------------ATAAG......................................................................................................................................................2650.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCGATATTGCTGCA-TTTGACC.............................................................................................................................................................................................2160.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TTCGATATTGCTGCA-TTTGACAT............................................................................................................................................................................................2360.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TATTGCTGCA-TTTGACCATG..........................................................................................................................................................................................2060.171000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ACTTCGATATTGCTGCA-TTTGACCA............................................................................................................................................................................................2560.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TTCGATATTGCTGCA-TTTGACCT............................................................................................................................................................................................2360.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TACTTCGATATTGCTGCA-TTTGACCT............................................................................................................................................................................................2660.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TACTTCGATATTGCTGCA-TTTGAC..............................................................................................................................................................................................2460.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATATTGCTGCA-TTTGACCATG..........................................................................................................................................................................................2160.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..................ACTTCGATATTGCTGCA-TTTGACC.............................................................................................................................................................................................2460.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTTCGATATTGCTGCA-TTTGA...............................................................................................................................................................................................2160.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................A-TTTGACCATGGTG----------------------------ATAAGTG....................................................................................................................................................2160.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
A---------TCGGGTTTATCTCCATACTTTGTCC--------------GTTAGTT------ATTGCTGC---------------TAACT---GGATTA----------------CTAAG---------------ATGA-TTACG------TGTAGTAGGTTGGTCTTCTT-C---TTCTTCTTCAGATCTTC--TGG------AATT---ATCGTATTTGCTTTTATT---SizeHit CountTotal NormTotal
No Reads
droBia1
A---------TAGGGTTTATCTCAATACTTTGTCC--------------GATTGTC------AATTGAATTACAG------------------TTGCTA----------------ATACAATAGAGAAACTT---ATTGGTTTC----------------ATTGGTCCGTT-C---GTTTCCTTCCTTTGGCC--TGG------GATTATTATCATATTTGCTCTTATT---SizeHit CountTotal NormTotal
No Reads
droTak1
AA--------TAGGGTTTATTTCAATGCTCTGCCC--------------GATTGTT------AGTTGAATTATAG------------------TTGTTA----------------GTATTATGAAGAA-GGT-C-ATTG-TTTTCATTAAGTTGTTGTTGTTGGGTCCGTT-C---ATTTTCTTCTGCTTGCC--TGG------AATTATCATCGTATTTACTTTTATT---SizeHit CountTotal NormTotal
No Reads
droEle1
A---------TCGGATTTATCTCAATGTTTTGTCC--------------CATTGCC------ATTTTAGTTATAG------------------TCAATA----------------AAATTATC---GA-CAGAG-ATAA-TTTTA------AACAGATTGTTGTGCTCTTT-G---GTTTCCTTCTGCTTCCC--TGG------AATT---ATCGTATTTACTTTTATT---SizeHit CountTotal NormTotal
No Reads
droRho1
-----------TGGGTTGATCTCAATATTTTGTCC--------------CATTGTA------ATTTGAATTAAAG------------------TTGATA----------------TTATTAAAAATAA-AGT-G-ATGA-TCATATTTGTGTTG---TCTTTGTAGTTTTT-G---GTTTCCTTAGGTTGGTC--TGG------AATT---ATTATATTTACTTCTATT---SizeHit CountTotal NormTotal
No Reads
droFic1
A---------TTGGATTTATTTCGATACTTTGTCT--------------TTTCGCC------ATTTGAATCGAAG------------------TGGCTA----------------AAATGATCATAAA-CAT--ACAAA-TTTTA------TAGAGGTTGTTTCATCCATT-C---AGTTTCTTCCGTTTGTC--TGG------AATT---ATTATATTTACTGTCATTAATSizeHit CountTotal NormTotal
No Reads
droKik1
A---------TCGGGTTTATTTCGATGTTACTCCC--------------TTGGACC------ATATGAATCATGG---------GAATCATACA----TATC---------------------------------TGCAA-GATT------GGAAGTATTAGC---CGTTT-A---CATTTCTTCGTCGGGTC--TGG------AAGT---ATCGTATTTGCTTTTGTT---SizeHit CountTotal NormTotal
No Reads
droAna3
AA--------TTGGATTGATATCTATGTTCTGACA--------------CATGGCG------TGATATATAAGAC------------------ATAATA----------------AAGTTATTATATA-AAA-G-ATAA-TTTTA------TTAAGCT---------GGGTTA----TCTTCCGGTGGAAATC--TGG------AATT---ATTATATTTGCTGGTATT---SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
................TGATATCTATGTTCTGACA--------------CATGGCG------T.........................................................................................................................................................................27200.85176011000
..............................................................................................................................TA-AAA-G-ATAA-TTTTA------TTAAGCT---------GGGTT............................................................27200.357070000
...........................TTCTGACA--------------CATGGCG------TGATATATAAGAC------------------A..........................................................................................................................................29200.306600000
..............................................................................................................................TA-AAA-G-ATAA-TTTTA------TTAAGCT---------GGGT.............................................................26200.255050000
............................................................................................................................TATA-AAA-G-ATAA-TTTTA------TTAAGCT---------GGGT.............................................................28200.255050000
............................TCTGACA--------------CATGGCG------TGATATATAAGAC------------------A..........................................................................................................................................28200.153300000
.......................TATGTTCTGACA--------------CATGGCG------TGATATA...................................................................................................................................................................26200.153120000
..............................................................TGATATATAAGAC------------------ATAATA----------------AAGTTATTA............................................................................................................28200.153030000
..............................................................................................................................TA-AAA-G-ATAA-TTTTA------TTAAGCT---------GGGC.............................................................26200.153030000
................TGATATCTATGTTCTGACA--------------CATGGCG------..........................................................................................................................................................................26200.153300000
.................................................................TATATAAGAC------------------ATAATA----------------AAGTTATTA............................................................................................................25200.153030000
.......................TATGTTCTGACA--------------CATGGCG------TGATA.....................................................................................................................................................................24200.102020000
...............TTGATATCTATGTTCTGACA--------------CATGGC.................................................................................................................................................................................26200.102110000
...............................GACA--------------CATGGCG------TGATATATAAGAC------------------AT.........................................................................................................................................26200.102200000
.........................TGTTCTGACA--------------CATGGCG------TGATATA...................................................................................................................................................................24200.102020000
................TGATATCTATGTTCTGACA--------------CATGGCG------TGA.......................................................................................................................................................................29200.102200000
...........................TTCTGACA--------------CATGGCG------TGATATATAAGAC------------------...........................................................................................................................................28200.102200000
.........................TGTTCTGACA--------------CATGGCG------TGATATATAA................................................................................................................................................................27200.102200000
................TGATATCTATGTTCTGACA--------------CATGGCG------C.........................................................................................................................................................................27200.102020000
................TGATATCTATGTTCTGACA--------------CATGGCG------TG........................................................................................................................................................................28200.102110000
..............................................................................................................................TA-AAA-G-ATAA-TTTTA------TTAAGCT---------GGG..............................................................25200.102011000
..............................TGACA--------------CATGGCG------TGATATATAAGAC------------------A..........................................................................................................................................26200.102020000
...............................................................................................................................................................................................TC--TGG------AATT---ATTATATTTGCTGGTATT---27200.102020000
...............................................................................................................................................................................................TC--TGG------AATT---ATTATATTTGCTGGTAT....26200.102020000
............................................................................................................................TATA-AAA-G-ATAA-TTTTA------TTAAGCT---------GGGTT............................................................29200.102020000
........................ATGTTCTGACA--------------CATGGCG------TGA.......................................................................................................................................................................21200.051100000
.................GATATCTATGTTCTGACA--------------CATGGCG------T.........................................................................................................................................................................26200.051100000
................TGATATCTATGTTCTGACA--------------CC.....................................................................................................................................................................................21200.051010000
AA--------TTGGATTGATATCTATGTTCTGACA--------------.......................................................................................................................................................................................27200.051100000
.........................TGTTCTGACA--------------CATGGCG------TGA.......................................................................................................................................................................20200.051001000
...............................GACA--------------CATGGCG------TGATATATAAGAC------------------ATAAT......................................................................................................................................29200.051100000
...................................................................TATAAGAC------------------ATAATA----------------AAGTTATTAT...........................................................................................................24200.051100000
..........TTGGATTGATATCTATGTTCTGAC......................................................................................................................................................................................................24200.051010000
.................................................CATGGCG------TGATATATAAGAC------------------ATAATA----------------.....................................................................................................................26200.051010000
...............TTGATATCTATGTTCTGACA--------------CATGGCG------T.........................................................................................................................................................................28200.051010000
.................GATATCTATGTTCTGACA--------------CATGG..................................................................................................................................................................................23200.051100000
.................................................................................................TA----------------AAGTTATTATATA-AAA-G-ATAA-TT..........................................................................................25200.051010000
..................................A--------------CATGGCG------TGATATATAAGAC------------------ATAATA----------------.....................................................................................................................27200.051100000
....................ATCTATGTTCTGACA--------------CATGGCG------..........................................................................................................................................................................22200.051100000
...........................TTCTGACA--------------CATGGCG------TGATATA...................................................................................................................................................................22200.051010000
..............................TGACA--------------CATGGCG------TGATATATAAGAC------------------ATAA.......................................................................................................................................29200.051100000
...................................................................................................................................................................................................TGG------AATT---ATTATATTTGCTGGTATT---25200.051100000
................TGATATCTATGTTCTGACA--------------CAT....................................................................................................................................................................................22200.051100000
...................................................................................................................................................................................................TGG------AATT---ATTATATTTGC..........18200.051010000
................................ACA--------------CATGGCG------TGATATATAAGAC------------------AT.........................................................................................................................................25200.051100000
droBip1
A---------TCGGATTTATTTCGATGTTTTGTCC--------------ATTCGTC------ATTTGGATTGAAG------------------TAGTTA----------------ATATAATCATAAA-CAT--AATAA-TTTTA------TAGAGGTTGTTGAATCCATT-A---GGTTTCTTTTGTTTGTC--TGG------AATT---GTTATATTTACTTTTATT---SizeHit CountTotal NormTotal
No Reads
dp5
CA--------TAGGATTTATTTCTATGTTTTGGCC--------------CTGTGCC------ATTACGATGGTAA------------------TTATGA----------------GGAAGATGAGGAT-TA----AAAA-TTGTT------TTGAAGTTCGCCGATTCCATTA----ACTTCCTCGGTTTCTC--TGG------AATT---ATTATATTTGCTTGTATT---SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGG..........................................................................................................251836.176510571130150301570
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGGA.........................................................................................................261814.562620233101021510
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAG...........................................................................................................241813.222380204806014240
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGA............................................................................................................23184.678407410108000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGGAT-.......................................................................................................27183.065504420009000
................................................................TACGATGGTAA------------------TTATGA----------------GGAAGATG.............................................................................................................25182.5646025000011370
....................................................................ATGGTAA------------------TTATGA----------------GGAAGATGAGG..........................................................................................................24182.113803800000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATG.............................................................................................................22191.683202710004000
....................................................................ATGGTAA------------------TTATGA----------------GGAAGATGAG...........................................................................................................23181.172102100000000
................................................................TACGATGGTAA------------------TTATGA----------------GGAAGA...............................................................................................................23181.061901500001300
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGA..........................................................................................................25181.061901800001000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGGT.........................................................................................................26180.891601510000000
................................................................TACGATGGTAA------------------TTATGA----------------GGAAGATGA............................................................................................................26170.821402000001020
................................................................TACGATGGTAA------------------TTATGA----------------GGAAGAT..............................................................................................................24180.72130930001000
.....................................................................TGGTAA------------------TTATGA----------------GGAAGATGAGG..........................................................................................................23180.61110910001000
....................................................................ATGGTAA------------------TTATGA----------------GGAAGATGA............................................................................................................22180.611101100000000
.......................................................................................................................................................................................TCGGTTTCTC--TGG------AATT---ATTATATT.............25200.601201000001100
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAA...........................................................................................................24180.56100800200000
...........................................................................................................................................................................TA----ACTTCCTCGGTTTCTC--TGG------AAT.........................24200.551101010000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGT..........................................................................................................25180.5090800100000
.................TATTTCTATGTTTTGGCC--------------CTGTGC.................................................................................................................................................................................24200.50100410200300
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGGAA-.......................................................................................................27180.5090810000000
....................................................................ATGGTAA------------------TTATGA----------------GGAAGATGAGGA.........................................................................................................25180.5090600000300
................TTATTTCTATGTTTTGGCC--------------CTGTGC.................................................................................................................................................................................25200.4590600000210
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGGAT-T......................................................................................................28180.3970600001000
....................................................................................................................................................................................TCCTCGGTTTCTC--TGG------AATT---ATTA.................24200.3570000000700
..............................................................................................................................................................TCGCCGATTCCATTA----ACTTCCTCGGT............................................26190.3260200000400
....................................................................ATGGTAA------------------TTATGA----------------GGAAGATGAGGAT-.......................................................................................................26180.2850500000000
.................................................................ACGATGGTAA------------------TTATGA----------------GGAAGATG.............................................................................................................24180.2850400000100
.............................................................................................................................................................TTCGCCGATTCCATTA----ACTTCCTCGGT............................................27190.2650210000200
...............................................................................................................................................TT------TTGAAGTTCGCCGATTCCATTA----ACT....................................................2740.2510010000000
..............................TGGCC--------------CTGTGCC------ATTACGATGG................................................................................................................................................................22200.2550400100000
.......................TATGTTTTGGCC--------------CTGTGCC------ATTA......................................................................................................................................................................23200.2550500000000
..................................................................CGATGGTAA------------------TTATGA----------------GGAAGATGAGG..........................................................................................................26170.2440400000000
................................................................TACGATGGTAA------------------TTATGA----------------GGAAGAA..............................................................................................................24180.2240400000000
................................................................TACGATGGTAA------------------TTATGA----------------GGAAGATA.............................................................................................................25180.2240100000300
.....................................................................TGGTAA------------------TTATGA----------------GGAAGATGAGGAT-T......................................................................................................26180.2240400000000
.....................................................................TGGTAA------------------TTATGA----------------GGAAGATGAGGA.........................................................................................................24180.2240200001010
...............................................................TTACGATGGTAA------------------TTATGA----------------GGAAGATG.............................................................................................................26180.2240200000200
...................................................................GATGGTAA------------------TTATGA----------------GGAAGAT..............................................................................................................21190.2140300001000
..........TAGGATTTATTTCTATGTTTTGGC......................................................................................................................................................................................................24100.2020000000200
.....................................................................................................................................................................TTCCATTA----ACTTCCTCGGTTTCTC--TG...................................26200.2040100000300
.............................TTGGCC--------------CTGTGCC------ATTACGATGGT...............................................................................................................................................................24200.2040400000000
.....................................................................................................................................................................TTCCATTA----ACTTCCTCGGTTTCTC--TGG------............................27200.2040400000000
........................................................................................................................................................................................CGGTTTCTC--TGG------AATT---ATTATATT.............24200.2040000000400
.....................TCTATGTTTTGGCC--------------CTGTGCC------ATTA......................................................................................................................................................................25200.2040300100000
.................TATTTCTATGTTTTGGCC--------------CTGTG..................................................................................................................................................................................23200.2040010000300
....................TTCTATGTTTTGGCC--------------CTGTGCC------ATT.......................................................................................................................................................................25200.2040400000000
.....................................................................TGGTAA------------------TTATGA----------------GGAAGATGAG...........................................................................................................22180.1730300000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAC...........................................................................................................24180.1730210000000
................................................................TACGATGGTAA------------------TTATGA----------------GGAAG................................................................................................................22180.1730300000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAAA..........................................................................................................25180.1730300000000
.......................................................................GTAA------------------TTATGA----------------GGAAGATGAGG..........................................................................................................21190.1630300000000
........................................................................TAA------------------TTATGA----------------GGAAGATGAGGAT-T......................................................................................................23190.1630300000000
........................................................................TAA------------------TTATGA----------------GGAAGATGAGGA.........................................................................................................21190.1630200000100
......................................................................GGTAA------------------TTATGA----------------GGAAGATGAG...........................................................................................................21190.1630300000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGA...............................................................................................................20190.1630300000000
.......................................................................................................................................................................................TCGGTTTCTC--TGG------AATT---ATTATAT..............24200.1530000000120
.................TATTTCTATGTTTTGGCC--------------CTG....................................................................................................................................................................................21200.1530300000000
....................TTCTATGTTTTGGCC--------------CTGTGCC------..........................................................................................................................................................................22200.1530010000200
......................................................................................................................................................................TCCATTA----ACTTCCTCGGTTTCTC--TGG------............................26200.1530000000030
....................TTCTATGTTTTGGCC--------------CTGTG..................................................................................................................................................................................20200.1530300000000
...................TTTCTATGTTTTGGCC--------------CTGTGC.................................................................................................................................................................................22200.1530000100200
..........................................................................A------------------TTATGA----------------GGAAGATGAGG..........................................................................................................18200.1530300000000
....................................................................................................................................................................................TCCTCGGTTTCTC--TGG------AATT---ATTATAT..............27200.1530100000020
..................................................................CGATGGTAA------------------TTATGA----------------GGAAGATGAG...........................................................................................................25170.1220200000000
................................................................TACGATGGTAA------------------TTATGA----------------GGAAGATGAG...........................................................................................................27170.1220100000100
................................................................TACGATGGTAA------------------TTATGA----------------GGAAGATGAA...........................................................................................................27170.1220100100000
................................................................TACGATGGTAA------------------TTATGA----------------GGAAA................................................................................................................22180.1120200000000
...............................................................TTACGATGGTAA------------------TTATGA----------------GGAAGA...............................................................................................................24180.1120200000000
....................................................................ATGGTAA------------------TTATGA----------------GGAAGATGAGA..........................................................................................................24180.1120200000000
........................................................................................................................................................TGAAGTTCGCCGATTCCATTA----ACT....................................................24190.1120200000000
........................................................................TAA------------------TTATGA----------------GGAAGATGAGG..........................................................................................................20190.1120200000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAG................................................................................................................19190.1120200000000
........................................................................................................................................................TGAAGTTCGCCGATTCCATTA----ACTTC..................................................26190.1120110000000
...................................................................GATGGTAA------------------TTATGA----------------GGAA.................................................................................................................18190.1120200000000
.............................................................................................................................................................TTCGCCGATTCCATTA----ACTTCCTCGG.............................................26190.1120200000000
......................................................................GGTAA------------------TTATGA----------------GGAAGATGAGG..........................................................................................................22190.1120200000000
.......................................................................................................................................................TTGAAGTTCGCCGATTCCATTA----ACT....................................................25190.1120110000000
..............................TGGCC--------------CTGTGCC------ATTACGATGGTA..............................................................................................................................................................24190.1120200000000
........................................................................................................................................................TGAAGTTCGCCGATTCCATTA----ACTT...................................................25190.1120200000000
................TTATTTCTATGTTTTGGCC--------------CTGTG..................................................................................................................................................................................24200.1020000000200
...........................................................................................................................................................................................TTTCTC--TGG------AATT---ATTATATTTG...........23200.1020000000020
..........................................................................................................................................................................TTA----ACTTCCTCGGTTTCTC--TGG------AATT---.....................26200.1020200000000
....................TTCTATGTTTTGGCC--------------CTGTGT.................................................................................................................................................................................21200.1020100100000
..................ATTTCTATGTTTTGGCC--------------CTGTGC.................................................................................................................................................................................23200.1020200000000
..........TAGGATTTATTTCTATGTTTTGGCC--------------C......................................................................................................................................................................................26100.1010010000000
............................TTTGGCC--------------CTGTGCC------ATTACGATGG................................................................................................................................................................24200.1020200000000
..............................TGGCC--------------CTGTGCC------ATTACGATGGT...............................................................................................................................................................23200.1020110000000
.....................................................................................................................................................................TTCCATTA----ACTTCCTCGGTTTCTC--.....................................24200.1020200000000
.......................TATGTTTTGGCC--------------CTGTGCC------ATTAC.....................................................................................................................................................................24200.1020200000000
............................................................................................................................................................................................TTCTC--TGG------AATT---ATTATATTTGCTTG.......26110.0910100000000
.............................................................................................................................................................................................TCTC--TGG------AATT---ATTATATTTGCTTGTA.....27110.0910000000010
..................................................................CGATGGTAA------------------TTATGA----------------GGAAGATGA............................................................................................................24170.0610100000000
..................................................................CGATGGTAA------------------TTATGA----------------GGAAGATGAAA..........................................................................................................26170.0610000001000
.................................................................ACGATGGTAA------------------TTATGA----------------GGAAGATGAGG..........................................................................................................27170.0610100000000
................................................................TACGATGGTAA------------------TTATGA----------------GGAAGATGAAA..........................................................................................................28170.0610100000000
.....................................................................TGGTAA------------------TTATGA----------------GGAAGATGAGA..........................................................................................................23180.0610100000000
....................................................................ATGGTAA------------------TTATGA----------------GGAAGATGAGGAT-T......................................................................................................27180.0610100000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGGC.........................................................................................................26180.0610100000000
................................................................TACGATGGTAA------------------TTATGA----------------GGA..................................................................................................................20180.0610100000000
....................................................................ATGGTAA------------------TTATGA----------------GGAAGATGAC...........................................................................................................23180.0610100000000
..............................TGGCC--------------CTGTGCC------ATTACGATGGTAA------------------T..........................................................................................................................................26180.0610100000000
...............................................................TTACGATGGTAA------------------TTATGA----------------GGAAGAT..............................................................................................................25180.0610100000000
..............................TGGCC--------------CTGTGCC------ATTACGATGGTAA------------------TA.........................................................................................................................................27180.0610000100000
..................................................TGTGCC------ATTACGATGGTAA------------------TTATGA----------------GGA..................................................................................................................28180.0610000100000
.................................................................ACGATGGTAA------------------TTATGA----------------GGAAGA...............................................................................................................22180.0610100000000
................................................................TACGATGGTAA------------------TTATGA----------------GGAAGAC..............................................................................................................24180.0610010000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGC..........................................................................................................25180.0610010000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAT...........................................................................................................24180.0610100000000
..................................................................CGATGGTAA------------------TTATGA----------------GGAAGAT..............................................................................................................22180.0610000100000
..................................................................CGATGGTAA------------------TTATGA----------------GGAAGATG.............................................................................................................23180.0610100000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGGAC-.......................................................................................................27180.0610100000000
..................................................TGTGCC------ATTACGATGGTAA------------------TTATG......................................................................................................................................24180.0610100000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATGAGGAA-A......................................................................................................28180.0610100000000
.................................................................ACGATGGTAA------------------TTATGA----------------GGAAGAT..............................................................................................................23180.0610100000000
..............................TGGCC--------------CTGTGCC------ATTACGATGGTAA------------------TT.........................................................................................................................................27180.0610100000000
.....................................................................TGGTAA------------------TTATGA----------------GGAAGATGAGGAT-.......................................................................................................25180.0610100000000
.....................................................................TGGTAA------------------TTATGA----------------GGAAGATGA............................................................................................................21180.0610100000000
........................................................................................................................................................TGAAGTTCGCCGATTCCATTA----ACTTT..................................................26190.0510100000000
..............................TGGCC--------------CTGTGCC------ATTACGATGGTAT------------------...........................................................................................................................................25190.0510100000000
..............................................................................................................................................................TCGCCGATTCCATTA----ACTTCCTCGG.............................................25190.0510100000000
.......................................................................GTAA------------------TTATGA----------------GGAAGATGAGGAT-T......................................................................................................24190.0510100000000
.............................TTGGCC--------------CTGTGCC------ATTACGATGGTAA------------------...........................................................................................................................................26190.0510100000000
..............................................................................................................................................................TCGCCGATTCCATTA----ACTTCCTCGGTT...........................................27190.0510100000000
.......................................................................................................................................................TTGAAGTTCGCCGATTCCATTA----ACTT...................................................26190.0510100000000
...................................................................GATGGTAA------------------TTATGA----------------GGAAGATA.............................................................................................................22190.0510100000000
.............................................................................................................................................................TTCGCCGATTCCATTA----ACTTCCTCGT.............................................26190.0510100000000
........................................................................TAA------------------TTATGA----------------GGAAGATGAGGAT-.......................................................................................................22190.0510100000000
.............................................................................................................................................................TTCGCCGATTCCATTA----ACTTCCTCGGTT...........................................28190.0510100000000
.........................................................................................................................................................GAAGTTCGCCGATTCCATTA----ACT....................................................23190.0510100000000
....................................................................ATGGTAA------------------TTATGA----------------GGAAGA...............................................................................................................19190.0510100000000
........................................................................................................................................................TGAAGTTCGCCGATTCCATTA----ACTTCA.................................................27190.0510000000010
....................................................................ATGGTAA------------------TTATGA----------------GGAAGATG.............................................................................................................21190.0510100000000
.........................................................................................................................................................GAAGTTCGCCGATTCCATTA----ACTTC..................................................25190.0510100000000
.......................................................................................................................................................TTGAAGTTCGCCGATTCCATTA----ACTA...................................................26190.0510100000000
...................................................................................................................................................................GATTCCATTA----ACTTCCTCGGTTTCTC--.....................................26200.0510010000000
............................TTTGGCC--------------CTGTGCC------ATTACGATGGT...............................................................................................................................................................25200.0510100000000
..........................................................................................................................................................AAGTTCGCCGATTCCATTA----ACTTC..................................................24200.0510100000000
.......................TATGTTTTGGCC--------------CTGTGCC------ATT.......................................................................................................................................................................22200.0510100000000
...................TTTCTATGTTTTGGCC--------------CTGTG..................................................................................................................................................................................21200.0510100000000
....................................................................................................................................................................................TCCTCGGTTTCTC--TGG------AATT---ATTATATT.............28200.0510100000000
....................................................................................................................................................................................TCCTCGGTTTCTC--TGG------AATT---ATT..................23200.0510100000000
................TTATTTCTATGTTTTGGCC--------------CTGTGCC------ATT.......................................................................................................................................................................29200.0510100000000
......................................................................................................................................................................TCCATTA----ACTTCCTCGGTTTCTC--T....................................24200.0510100000000
.............................................................................................TTATGA----------------GGAAGATGAGGA.........................................................................................................18200.0510100000000
..............................................................................................................................................................TCGCCGATTCCATTA----ACTTCCC................................................22200.0510001000000
....................TTCTATGTTTTGGCC--------------CTGTGC.................................................................................................................................................................................21200.0510100000000
..........................................................................A------------------TTATGA----------------GGAAGATGAGGAT-.......................................................................................................20200.0510100000000
.....................TCTATGTTTTGGCC--------------CTGTGCC------ATT.......................................................................................................................................................................24200.0510100000000
..............................TGGCC--------------CTGTGCC------ATTACGATG.................................................................................................................................................................21200.0510100000000
..............ATTTATTTCTATGTTTTG........................................................................................................................................................................................................18200.0510100000000
................TTATTTCTATGTTTTGGCC--------------CTGTGCC------AT........................................................................................................................................................................28200.0510100000000
...............................GGCC--------------CTGTGCC------ATTACGATGGT...............................................................................................................................................................22200.0510100000000
....................................................................................................................................................................ATTCCATTA----ACTTCCTCGGTTTC.........................................23200.0510000000100
.....................TCTATGTTTTGGCC--------------CTGTGC.................................................................................................................................................................................20200.0510100000000
.............................................................................................TTATGA----------------GGAAGATGAGGAT-T......................................................................................................20200.0510100000000
..............................................................................................TATGA----------------GGAAGATGAGGTA-.......................................................................................................18200.0510000000010
.........................................................................AA------------------TTATGA----------------GGAAGATGAGGAC-.......................................................................................................21200.0510100000000
...................................................................................................................................................................................TTCCTCGGTTTCTC--TGG------A...........................18200.0510000010000
................TTATTTCTATGTTTTGGCC--------------C......................................................................................................................................................................................20200.0510000000100
.................TATTTCTATGTTTTGGCC--------------CTGTGCC------ATA.......................................................................................................................................................................28200.0510100000000
....................TTCTATGTTTTGGCC--------------CTGTGCC------ATTAAA....................................................................................................................................................................28200.0510100000000
..............................................................................................TATGA----------------GGAAGATGAGGAT-T......................................................................................................19200.0510100000000
.....................................................................................................................................................................TTCCATTA----ACTTCCTCGGTTT..........................................21200.0510100000000
.................TATTTCTATGTTTTGGCC--------------.......................................................................................................................................................................................18200.0510010000000
.............................................................................................TTATGA----------------GGAAGATGAGGAT-.......................................................................................................19200.0510100000000
......................................................................................................................................................................TCCATTA----ACTTCCTCGGTTTCTC--TG...................................25200.0510100000000
...............TTTATTTCTATGTTTTGGCC--------------CTGTGC.................................................................................................................................................................................26200.0510000000100
..........................................................................A------------------TTATGA----------------GGAAGATGAGGAT-T......................................................................................................21200.0510100000000
...................................................................................................................................................................GATTCCATTA----ACTTCCTCGGTTTCT........................................25200.0510100000000
.........................................................................AA------------------TTATGA----------------GGAAGATGAGGA.........................................................................................................20200.0510100000000
....................TTCTATGTTTTGGCC--------------CTGTGCC------ATTA......................................................................................................................................................................26200.0510100000000
................TTATTTCTATGTTTTGGCC--------------CTGTGA.................................................................................................................................................................................25200.0510100000000
......................................................................................................................................................................................CTCGGTTTCTC--TGG------AATT---ATTATA...............24200.0510000000100
...........................................................................................................................................................AGTTCGCCGATTCCATTA----ACTTCC.................................................24200.0510100000000
..........................................................................................................................................................................TTA----ACTTCCTCGGTTTCTC--TGG------AAA.........................25200.0510100000000
..........................................................................................................................................................................TTA----ACTTCCTCGGTTTCTC--TG...................................21200.0510100000000
.................TATTTCTATGTTTTGGCC--------------CTGTGCC------ATT.......................................................................................................................................................................28200.0510100000000
...........................................................................................................................................................................TA----ACTTCCTCGGTTTCTC--TGG------AATT---A....................26200.0510100000000
droPer2
AA--------TAGAATTTAATTCTATGTTTTGGCC-C------------CTGTGCC------ATTTCCGAT--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--TTTAA-TTGTG------TTGAACTTCGCCGATTCCATTA----ACTTCCTCGGTTTCTC--TGG------AATT---ATTATATTTGCTTCTATT---SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................GAT--GG------------------TAATTA-----------TGA--GGAAGATG---AG-.......................................................................................................24203.15630000063
....................................................................GAT--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GA.....................................................................................................26202.30460442000
....................................................................GAT--GG------------------TAATTA-----------TGA--GGAAGATG---A.........................................................................................................23201.25250400021
....................................................................GAT--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--..................................................................................................27200.70140000014
....................................................................GAT--GG------------------TAATTA-----------TGA--GGAAGATG---..........................................................................................................22200.65130000013
......................................................................T--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--TT................................................................................................27200.255030002
......................................................................T--GG------------------TAATTA-----------TGA--GGAAGATG---AG-G......................................................................................................23200.204020002
......................................................................T--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--T.................................................................................................26200.204040000
.............................................................................................................................................................................................TCTC--TGG------AATT---ATTATATTTGCTTC.......25200.204031000
...........................................................................................................................................................................TA----ACTTCCTCGGTTTCTC--TGG------AAT.........................24200.204040000
....................................................................GAT--GG------------------TAATTA-----------TGA--GGAAGAT..............................................................................................................21200.204000004
....................................................................GAT--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--T.................................................................................................28200.153000003
......................................................................T--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GA.....................................................................................................24200.153020001
.....................................................................AT--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--..................................................................................................26200.153030000
......................................................................T--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--..................................................................................................25200.153000003
............................................................................................................................................................................................TTCTC--TGG------AATT---ATTATATTTGCTTC.......26200.153030000
..........................................................................................................................................................................TTA----ACTTCCTCGGTTTCTC--TGG------AA..........................24200.102200000
............................................................................................................................................................................................TTCTC--TGG------AATT---ATTATATTTGCTTCTA.....28200.102020000
..........................................................................G------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--TT................................................................................................25200.102000002
......................................................................................................................................................................TCCATTA----ACTTCCTCGGTTTCTC--TGG------AA..........................28200.102020000
.........................................................................................................................TG---AG-GAT--TTTAA-TTGTG------TTG..............................................................................20200.102000002
..........................................................................G------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--..................................................................................................23200.102010001
....................................................................................................................GAAGATG---AG-GAT--TTTAA-TTGTG------TT...............................................................................24200.102000002
.................................................................................................TA-----------TGA--GGAAGATG---AG-GAT--TTTAA-T...........................................................................................24200.051010000
....................................................................................................................GAAGATG---AG-GAT--TTTAA-TTG.........................................................................................20200.051010000
..........................................................................G------------------TAATTA-----------TGA--GGAAGATG---AG-GA.....................................................................................................22200.051010000
....................................................................GAT--GG------------------TAATTA-----------TGA--GGAAGATG---AG-GT.....................................................................................................26200.051001000
....................................................................................................................................................................................TCCTCGGTTTCTC--TGG------AATT---ATT..................23200.051010000
..........................................................................G------------------TAATTA-----------TGA--GGAAGATG---AG-.......................................................................................................20200.051010000
.............................................................................................................................................................................................TCTC--TGG------AATT---ATTATATTTGCTTCTA.....27200.051000001
.............................................................................................................................................................................................TCTC--TGG------AATT---ATTATATTTGCTTCT......26200.051010000
......................................................................T--GG------------------TAATTA-----------TGA--GGAAGATG---A.........................................................................................................21200.051010000
.............................................................................................TAATTA-----------TGA--GGAAGATG---AG-GAT--TTTAA-T...........................................................................................28200.051100000
..........................................................................G------------------TAATTA-----------TGA--GGAAGATG---AG-GAA--..................................................................................................23200.051010000
...............................................................................................................GA--GGAAGATG---AG-GAT--TTTAA-TTG.........................................................................................23200.051010000
.......................................................................................................................................................................CCATTA----ACTTCCTCGGTTTCT........................................21200.051100000
..........................................................................G------------------TAATTA-----------TGA--GGAAGATG---AG-G......................................................................................................21200.051000001
....................................................................................................................................................................................TCCTCGGTTTCTC--TGG------AATT---ATTATAT..............27200.051010000
..........................................................................G------------------TAATTA-----------TGA--GGAAGATG---AG-GAT--T.................................................................................................24200.051010000
.............................................................................................................................................................TTCGCCGATTCCATTA----ACTTCCTCGGTT...........................................28200.051010000
...........................................................................................................................................................................TA----ACTTCCTCGGTTTCTC--TG...................................20200.051001000
....................................................................GAT--GG------------------TAATTA-----------TGA--GGAAG................................................................................................................19200.051000001
....................................................................GAT--GG------------------TAATTA-----------TGA--GGAAGATG---AG-A......................................................................................................25200.051010000
droWil2
GGTGCTTTTACTGGGTTTATGTCAATGGATTGGCT--------------GCATGTT------GTTTTTAATGTTA------------------AAAGTA----------------GCATAATG---CA-CAA--AAAAG-TCATC------TTGAG----------------------------TTGTTGACCTTTAATTAATTAATT---GTCGTATTTGCTTTTATT---SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......TTACTGGGTTTATGTCAATGGATTG........................................................................................................................................................................................................25201.3527000270
.......TTACTGGGTTTATGTCAATGGAT..........................................................................................................................................................................................................23200.601206150
.........................................................................................................................TG---CA-CAA--AAAAG-TCATC------TTGAG----------------------------TTGT............................................26200.40800080
......................................................................................................................TAATG---CA-CAA--AAAAG-TCATC------TTGAG----------------------------T...............................................26200.20400040
..TGCTTTTACTGGGTTTATGTCAATG.............................................................................................................................................................................................................25200.15303000
........TACTGGGTTTATGTCAATGGATTGGC......................................................................................................................................................................................................26190.11210010
...GCTTTTACTGGGTTTATGTCAATG.............................................................................................................................................................................................................24200.10202000
......TTTACTGGGTTTATGTCAATGGAT..........................................................................................................................................................................................................24200.10202000
......TTTACTGGGTTTATGTCAATGGATTGG.......................................................................................................................................................................................................27180.06101000
.......TTACTGGGTTTATGTCAATGGATTGGC......................................................................................................................................................................................................27180.06101000
...................................................................................................................................................................................................TAATTAATTAATT---GTCGTATTTGCTT........26200.05100010
.....TTTTACTGGGTTTATGTCAATGGAT..........................................................................................................................................................................................................25200.05100100
..TGCTTTTACTGGGTTTATGTCAA...............................................................................................................................................................................................................23200.05100010
.......TTACTGGGTTTATGTCAATGGATC.........................................................................................................................................................................................................24200.05100010
.......TTACTGGGTTTATGTCAATGGA...........................................................................................................................................................................................................22200.05100010
...........TGGGTTTATGTCAATGGATTG........................................................................................................................................................................................................21200.05100010
.....TTTTACTGGGTTTATGTCAATG.............................................................................................................................................................................................................22200.05100100
......TTTACTGGGTTTATGTCAATGG............................................................................................................................................................................................................22200.05100100
.......................AATGGATTGGCT--------------GCATGTT------G.........................................................................................................................................................................20200.05100100
......................................................................................................................TAATG---CA-CAA--AAAAG-TCATC------TTGAG----------------------------TTG.............................................28200.05101000
...................................................................................................................................A--AAAAG-TCATC------TTGAG----------------------------TTGTTC..........................................22200.05100010
...............................................................................................................................A-CAA--AAAAG-TCATC------TTGAG----------------------------TTGTTGA.........................................26200.05100010
droVir3
A---------TAGGAATTATTTCAATACTTTGTGC--------------ATTTATA---------TGGTTTACAGTTATTGATAGTAATATATT----AATA---------------------------------ATTA----GTTT-A--AGCTGGTGCCTGTATGTTTT-GATCGCTGTCTGTTGTTGACC--TGT------AATT---GTTATATTTTCTTTGATT---SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................................TGTATGTTTT-GATCGCTGTCTGTTGT............................................26206.5013000000000000000000000000022007000042200100000000000000100000000001000000000000000000
.................................................................................................................................................................TGTATGTTTT-GATCGCTGTCTGTTG.............................................25205.3510700700200000000000000100010032015002000075300000000000000000000000000002000003401400
.................................................................................................................................................................TGTATGTTTT-GATCGCTGTCTGTT..............................................24203.6072003050000000000000002000002000000000005000000000000000000000000000320000000014000
.........................................................................................................................................................................................TGTTGACC--TGT------AATT---GTTATATTTTC..........2612.0020000000000000000010000000000000000000000000000000000000000000000100000000000000
.........................................................................................................................................................................................TGTTGACC--TGT------AATT---GTTATATTTTCT.........2712.0020000000000000000000100000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................TGTATGTTTT-GATCGCTGTCTGT...............................................23201.803600000030000000000000000000007000000000000000000000000000000000000026000000000000
.............................................................................................................................................................TGCCTGTATGTTTT-GATCGCTGTC..................................................2411.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................................................................TGTTGACC--TGT------AATT---GTTATATTTTCTT........2811.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
............................................................................................................................................................................................TGACC--TGT------AATT---GTTATATTTTCTT........2511.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................GGTGCCTGTATGTTTT-GATCGCTGT...................................................2511.0010000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................T-A--AGCTGGTGCCTGTATGTTTT-GATC........................................................2611.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................TGCCTGTATGTTTT-GATCGCTGTCTG................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................TGTATGTTTT-GATCGCTGTCT.................................................21200.55110010000000100000000000030021000000010000000000000000000000000000001000100000000
.........................................................................................................................................................................................TGTTGACC--TGT------AATT---GTTATATTTT...........2520.5010000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATGTTTT-GATCGCTGTCTGTTGT............................................23200.50100000300000000000000000000001000000000000000000000000000000000003200000000000100
.................................................................................................................................................................TGTATGTTTT-GATCGCTGTCTGTTGTT...........................................27200.4590000000000000000000000000003000000000000000000000000000000000000050000000000001
....................................................TATA---------TGGTTTACAGTTATTGATAGTAA................................................................................................................................................27200.4080000000000000000000000001052000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TTT-GATCGCTGTCTGTTGTTGACC--T....................................25200.4080000000000000000000000000000000000000000000000000000000000000000007000000010000
.................................................................................................................................................................TGTATGTTTT-GATCGCTGTCTG................................................22200.4080000001000000000000000000000000100000200000000000000000000000000000000000200002
.......................................................................................................................................................................TTTT-GATCGCTGTCTGTTGTT...........................................21200.3060000000100000000000000001100000000000010000000000000000000000000000200000000000
.........................................................................................................................................................................................TGTTGACC--TGT------AATT---GTTATATTTTG..........2640.2510000000000000000000000000000000000000000000000000000000000000001000000000000000
.......................................................................................................................................................................TTTT-GATCGCTGTCTGTTGTTGACC--.....................................25200.2550000000000000000000000000000000000000000000000000000000000000000000200000000030
........................................................................................................................................................................TTT-GATCGCTGTCTGTTG.............................................18200.2550000002200100000000000000000000000000000000000000000000000000000000000000000000
................................TGC--------------ATTTATA---------TGGTTTACAGTTATTGA......................................................................................................................................................27200.2040000000000000000000000000022000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TTT-GATCGCTGTCTGTTGTTGACC--TG...................................26200.2040000000000000000000000000000200000000020000000000000000000000000000000000000000
....................................................................................................................................................................ATGTTTT-GATCGCTGTCTGTTGTTGACC--.....................................28200.2040030000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................TTATA---------TGGTTTACAGTTATTGATAGT..................................................................................................................................................26200.2040000000000000000000000000030000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................T-GATCGCTGTCTGTTGTTGACC--TGT------A...........................26200.2040000000000000000000000000001000000000000000000000000000000000030000000000000000
....................................................................................................................................................................ATGTTTT-GATCGCTGTCTGTTGTTGA.........................................26200.1530010000000000000000000000002000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................T-GATCGCTGTCTGTTGTTGACC--TGT------AATT---GT...................31200.1530000000000000000000000000000000000000000000000000000000000000030000000000000000
........................................................................................................................................................................TTT-GATCGCTGTCTGTTGTTGACC--.....................................24200.1530000000000000000000000000000000000000000000000000000000000000000120000000000000
.......................................................................................................................................................................TTTT-GATCGCTGTCTGTTGTTGACC--T....................................26200.1530000000000000000000000000000000010000000000000000000000000000000002000000000000
...................................................................................................................................................................TATGTTTT-GATCGCTGTCTGTTGTT...........................................25200.1530000000000000000000000001000000010000010000000000000000000000000000000000000000
.....................................................................................................................................................................TGTTTT-GATCGCTGTCTGTTGT............................................22200.1530000000000000000000000010000000000000000000000000000000000000000001000000000010
.....................................................................................................................................................................TGTTTT-GATCGCTGTCTGTTG.............................................21200.1530000100010000000000000000000000000000000000000000000000000010000000000000000000
........................................................................................................................................................................TTT-GATCGCTGTCTGTTGTTGACC--TGT------............................27200.1530020000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................TTTATA---------TGGTTTACAGTTATTGATAGT..................................................................................................................................................27200.1530000000000000000000000000100010000010000000000000000000000000000000000000000000
....................TTCAATACTTTGTGC--------------ATTTATA---------TGGTT..................................................................................................................................................................27200.1020000000000000000000000000000000100000000000000000000000000000001000000000000000
..............................................................................................................................................................................TCGCTGTCTGTTGTTGACC--TGT------AATT---.....................26200.1020010000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................................................TGTATGTTTT-GATCGCTGTC..................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000020
..................................................................................................................................................................................TGTCTGTTGTTGACC--TGT------AATT---GT...................24200.1020000000000000000000000000100000000000000000000000000000000000000000000000010000
..........................................................................................................................................................................T-GATCGCTGTCTGTTGTTGACC--TGT------AA..........................27200.1020000000000000000000000000002000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TCTGTTGTTGACC--TGT------AATT---GTTATA...............26200.1020000000000000000000000000000000000000000000000000000000000000000000000200000000
........................................................................................................................................................................TTT-GATCGCTGTCTGTTGTT...........................................20200.1020000000000000000000000010000000000000000000000000000000000000000010000000000000
.................................................................................................................................................................TGTATGTTTT-GATCGCTGT...................................................19200.1020000100000000000000000000000000000000000000000000000000000000000000000000000001
.......................................................................................................................................................................TTTT-GATCGCTGTCTGTTGTTG..........................................22200.1020000000000000000000000000000000000100000000000000000000000000100000000000000000
...................................................TTATA---------TGGTTTACAGTTATTGATA....................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000002000000000000000
...................................................................................................................................................................TATGTTTT-GATCGCTGTCTGTTGT............................................24200.1020000000000000000000000020000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TTTT-GATCGCTGTCTGTTGTTGACC--TG...................................27200.1020000000000000000000000000010000000000000000000000000000000000000000000000000001
.......................................................................................................................................................................................GTTGTTGACC--TGT------AATT---GTTATATTT............26200.1020000000000000000000000000000000000000000000000000000000000000002000000000000000
........................................................................................................................................................................TTT-GATCGCTGTCTGTTGTTGA.........................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000020000000
...................................................................................................................................................................TATGTTTT-GATCGCTGTCTGT...............................................21200.1020000000100000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................TTT-GATCGCTGTCTGTTGTTG..........................................21200.1020020000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TTTT-GATCGCTGTCTGTTGT............................................20200.0510000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TGTTGACC--TGT------AATT---GTTATA...............21200.0510000000000000000000000000000000000010000000000000000000000000000000000000000000
............................TTTGTGC--------------ATTTATA---------TGGTTTACAGT............................................................................................................................................................25200.0510000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CTGTTGTTGACC--TGT------AATT---GTTATA...............25200.0510000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................GTGC--------------ATTTATA---------TGGTTTACAGTTATTGA......................................................................................................................................................28200.0510000000000000000000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GTTTT-GATCGCTGTCTGTTGTTGACC--.....................................26200.0510000000000000000000000000000000000000000000000000000000000000000000100000000000
....................TTCAATACTTTGTGC--------------ATTTATA---------TGGT...................................................................................................................................................................26200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................TATA---------TGGTTTACAGTTATTGATAGTA.................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000010000000000000
..................................C--------------ATTTATA---------TGGTTTACAGTTATTGATA....................................................................................................................................................27200.0510000000000000000000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGTTTT-GATCGCTGTCTGTTGTT...........................................23200.0510000001000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TT-GATCGCTGTCTGTTGTTGACC--TT...................................25200.0510000001000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TGTTGTTGACC--TGT------AATT---GTT..................21200.0510010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATGTTTT-GATCGCTGTCTGTTG.............................................22200.0510000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTATGTTTT-GATCGCTGTCTGG...............................................23200.0510000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................TATA---------TGGTTTACAGTTATTG.......................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000001000000000
....................................................................................................................................................................................TCTGTTGTTGACC--TGT------AATT---GTTATAT..............27200.0510010000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTTGTGC--------------ATTTATA---------TGGTTTACAGTTAT.........................................................................................................................................................28200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................TTACAGTTATTGATAGTAA................................................................................................................................................19200.0510000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CTGTTGTTGACC--TGT------AATT---GTTATAT..............26200.0510000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TGTTGTTGACC--TGT------AATT---GTTATATT.............26200.0510000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................TGTGC--------------ATTTATA---------TGGTTTACAGTT...........................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000001000000000000000
..................................................................................................................................................................................TGTCTGTTGTTGACC--TGT------AATT---GTTA.................26200.0510010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................GATCGCTGTCTGTTGTTGACC--.....................................21200.0510000000000000000000000000000000000000000000000000000000000000100000000000000000
................................TGC--------------ATTTATA---------TGGTTTACAGTTA..........................................................................................................................................................23200.0510000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................TTTT-GATCGCTGTCTGTTGTTGA.........................................23200.0510000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................T-GATCGCTGTCTGTTGTTGACC--T....................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................GTTTT-GATCGCTGTCTGT...............................................18200.0510000000000000000000000000100000000000000000000000000000000000000000000000000000
...........................CTTTGTGC--------------ATTTATA---------TGGTTTACAGT............................................................................................................................................................26200.0510000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................AATACTTTGTGC--------------ATTTATA---------TGGT...................................................................................................................................................................23200.0510000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TGTTGTTGACC--TGT------AATT---GTTATATC.............26200.0510010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TA---------TGGTTTACAGTTATTGATAGTAA................................................................................................................................................25200.0510000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................TTTATA---------TGGTTTACAGTTATTGATAG...................................................................................................................................................26200.0510000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................ATGTTTT-GATCGCTGTCTGTTGTT...........................................24200.0510010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TTATA---------TGGTTTACAGTTATTGATAGTA.................................................................................................................................................27200.0510010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................T-GATCGCTGTCTGTTGTTGACC--TG...................................24200.0510000000000000000000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................T-GATCGCTGTCTGTTGTTGACC--TGT------AAT.........................28200.0510000000000000000000000000000001000000000000000000000000000000000000000000000000
............................TTTGTGC--------------ATTTATA---------TGGTTTACAGTTA..........................................................................................................................................................27200.0510000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................C--------------ATTTATA---------TGGTTTACAGTTATTGAT.....................................................................................................................................................26200.0510000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATGTTTT-GATCGCTGTCT.................................................18200.0510100000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................T-GATCGCTGTCTGTTGTTGAC........................................21200.0510000000010000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GTTTT-GATCGCTGTCTGTTGTTGA.........................................24200.0510000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................TTGTTGACC--TGT------AATT---GTTATATTT............25200.0510000000000000000000000000100000000000000000000000000000000000000000000000000000
...........................CTTTGTGC--------------ATTTATA---------TGGTTTACAGTTA..........................................................................................................................................................28200.0510000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................TATGTTTT-GATCGCTGTCTGTTGTTGACC--.....................................29200.0510000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................CTTTGTGC--------------ATTTATA---------TGGTT..................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................................................................TT-GATCGCTGTCTGTTGTTGACC--T....................................24200.0510000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................TGTTGACC--TGT------AATT---GTTATATTT............24200.0510000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................................................................................................................................................................TGTTGTTGACC--TGT------AATT---GTTATA...............24200.0510000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................................................TGTATGTTTT-GATCGCTGTCTGTTGC............................................26200.0510000000000000000000000000000000000000000000000000000000000000000100000000000000
...................................................................................................................................................................TATGTTTT-GATCGCTGTCTG................................................20200.0510000000010000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TATGTTTT-GATCGCTGTCTGTTG.............................................23200.0510000000000000000000000000000000000000000000000000000000000000000100000000000000
.......................................................................................................................................................................TTTT-GATCGCTGTCTGTTG.............................................19200.0510000000000000000000000000000000001000000000000000000000000000000000000000000000
droMoj3
A---------TTGGGTTGATTTCGATGCTTTGATT--------------GAGGGTG------GG---------------AGATGCCAATG---ATAAAA----------------CTGATAGTAGTAA-TAT-G-GTGA-TT-------------------------------------------------TC--TGA--AATTAATT---GTCGTATTTACTTTCGTT---SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.......................................................................................................................TAGTAGTAA-TAT-G-GTGA-TT-------------------------------------------------TC--TGA--AA..............................2690.222200000
....................................................................................................................TGATAGTAGTAA-TAT-G-GTGA-TT-------------------------------------------------TC--TGA--AA..............................2990.111100000
....................................................................................................................TGATAGTAGTAA-TAT-G-GTGA-TT-------------------------------------------------TC--TGA--................................2790.111100000
........................................................................................................................AGTAGTAA-TAT-G-GTGA-TT-------------------------------------------------TC--TGA--AAT.............................26100.101100000
droGri2
A---------CTTTGTTTATTTCTATATTTTGGGT--------------ATTACTCTGAGTTATTGTTAGT------------------GTTGG----TATT---------------------------------ATCAT-TATT------AGCAGATGGACCGGTAGATG-A---ATCTTCCGTAGTTGACC--TGA------AATTATTGTTATATTTGATTATGTT---SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 10:13 PM