der_2

GCGGAAACGGAAATGCGAGGAGCGGAAGACGAACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGTTGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACAGGAAAATAACGAGTGCGCAGTGAATT *********************************...((((((((((((..((((((((.(((((..((((((((..(((....)))...))))))))))))))))))))).))).)))))))))...**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V108 head	V060 head	V107 male body	M055 female body	V040 embryo	M057 embryo	GSM1528801 follicle cells
..................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................	24	0	1	86227.00	86227	80707	2282	2538	444	233	23	0
..................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................	25	0	1	40626.00	40626	38281	760	1179	114	280	12	0
..................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................	22	0	1	40396.00	40396	36605	2484	1113	184	9	1	0
..................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................	23	0	1	35509.00	35509	29148	4447	1525	371	11	7	0
...................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................	23	0	1	10700.00	10700	9894	276	423	85	17	5	0
..................................................TAAAGTAAATAGTCTGGATTG..............................................................................................	21	0	1	5642.00	5642	4693	654	193	102	0	0	0
...................................................AAAGTAAATAGTCTGGATTGAT............................................................................................	22	0	1	5148.00	5148	4370	490	219	68	1	0	0
...................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................	24	0	1	4258.00	4258	3969	92	151	19	26	1	0
...................................................AAAGTAAATAGTCTGGATTGA.............................................................................................	21	0	1	3760.00	3760	3407	198	126	29	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................	26	0	1	3147.00	3147	2984	62	81	6	14	0	0
...................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................	25	0	1	1784.00	1784	1679	30	60	4	11	0	0
..................................................TGAAGTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	1030.00	1030	965	23	34	6	0	2	0
..................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................	25	1	1	1021.00	1021	954	20	38	6	3	0	0
..................................................TAAAGTAAATAGTCTGGATTGACG...........................................................................................	24	1	1	901.00	901	899	0	0	1	1	0	0
..................................................TAAAGTAAATAGTCTTGATTGATG...........................................................................................	24	1	1	897.00	897	888	3	1	2	3	0	0
..................................................TAAAGTAAATAGTCTGGATTGAAG...........................................................................................	24	1	1	613.00	613	613	0	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTTATG...........................................................................................	24	1	1	610.00	610	537	43	0	6	23	1	0
..................................................TGAAGTAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	545.00	545	504	10	27	1	2	1	0
..................................................TGAAGTAAATAGTCTGGATTGAT............................................................................................	23	1	1	508.00	508	429	50	24	5	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGAGG...........................................................................................	24	1	1	474.00	474	474	0	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGTATTGATG...........................................................................................	24	1	1	473.00	473	463	3	4	1	2	0	0
..................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................	24	1	1	466.00	466	374	62	4	1	25	0	0
..................................................TAAAGTAAATAGTCTTGATTGATGA..........................................................................................	25	1	1	453.00	453	449	1	1	0	1	1	0
..................................................TAAAGTAAATAGTATGGATTGATG...........................................................................................	24	1	1	438.00	438	434	4	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGACGA..........................................................................................	25	1	1	432.00	432	427	2	3	0	0	0	0
..................................................TAAAGTAAATAGTCTTGATTGA.............................................................................................	22	1	1	429.00	429	418	9	1	1	0	0	0
...................................................AAAGTAAATAGTCTGGATTG..............................................................................................	20	0	1	407.00	407	344	37	18	8	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGATTA..........................................................................................	25	1	1	395.00	395	351	17	2	0	25	0	0
..................................................TAAAGTAAATAGTCTTGATTGAT............................................................................................	23	1	1	394.00	394	387	4	3	0	0	0	0
..................................................TGAAGTAAATAGTCTGGATTGA.............................................................................................	22	1	1	379.00	379	339	22	14	4	0	0	0
..................................................TAAAGTAAATAGTCTGGATTTA.............................................................................................	22	1	1	377.00	377	326	49	0	2	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................	23	1	1	340.00	340	323	9	6	2	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................	23	1	1	329.00	329	328	0	0	1	0	0	0
..................................................TAAAGTAAATATTCTGGATTGATG...........................................................................................	24	1	1	325.00	325	322	0	1	1	1	0	0
..................................................TAAAGTAAATAGTCTGGATTGAAGA..........................................................................................	25	1	1	309.00	309	309	0	0	0	0	0	0
.....................................................AGTAAATAGTCTGGATTGATG...........................................................................................	21	0	1	299.00	299	277	12	8	2	0	0	0
..................................................TAAATTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	276.00	276	272	0	3	0	1	0	0
..................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................	24	1	1	269.00	269	242	10	13	3	1	0	0
..................................................TAAAGTAAATAGTCTGTATTGA.............................................................................................	22	1	1	256.00	256	242	9	4	1	0	0	0
..................................................TAAAGTAAATAGTCTGGATTTAT............................................................................................	23	1	1	233.00	233	167	60	2	4	0	0	0
..................................................TAAAGTAAATAGTATGGATTGATGA..........................................................................................	25	1	1	223.00	223	221	0	1	0	0	0	1
..................................................TAAAGTAAATAGTATGGATTGA.............................................................................................	22	1	1	211.00	211	208	3	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGTATTGATGA..........................................................................................	25	1	1	208.00	208	205	2	1	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGAGGA..........................................................................................	25	1	1	208.00	208	208	0	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................	27	0	1	200.00	200	186	6	8	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTTATGA..........................................................................................	25	1	1	199.00	199	173	9	0	1	16	0	0
..................................................TAAAGTAAATAGTCTGTATTGAT............................................................................................	23	1	1	172.00	172	152	18	2	0	0	0	0
..................................................TAAGGTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	166.00	166	160	2	4	0	0	0	0
..................................................TAAAGTAAATAGCCTGGATTGATG...........................................................................................	24	1	1	157.00	157	153	2	1	1	0	0	0
..................................................TAAAGTAAATATTCTGGATTGATGA..........................................................................................	25	1	1	156.00	156	156	0	0	0	0	0	0
...................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................	26	0	1	154.00	154	144	1	9	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................	23	1	1	149.00	149	147	1	0	1	0	0	0
.................................................CTAAAGTAAATAGTCTGGATTGATG...........................................................................................	25	1	1	143.00	143	139	3	1	0	0	0	0
..................................................TAAAGTAAATAGTATGGATTGAT............................................................................................	23	1	1	140.00	140	137	2	1	0	0	0	0
..................................................TAAAGTAAATATTCTGGATTGA.............................................................................................	22	1	1	139.00	139	136	3	0	0	0	0	0
...................................................AAAGTAAATAGTCTTGATTGATG...........................................................................................	23	1	1	135.00	135	135	0	0	0	0	0	0
..................................................TAAATTAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	128.00	128	124	0	2	1	1	0	0
..................................................TAAAGTAAATAGTCCGGATTGATG...........................................................................................	24	1	1	120.00	120	112	3	4	1	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................	26	1	1	115.00	115	110	0	3	1	1	0	0
..................................................TAAAGCAAATAGTCTGGATTGATG...........................................................................................	24	1	1	113.00	113	99	6	6	2	0	0	0
.....................................................AGTAAATAGTCTGGATTGATGA..........................................................................................	22	0	1	111.00	111	102	2	4	0	3	0	0
..................................................TAAAGTAAATATTCTGGATTGAT............................................................................................	23	1	1	111.00	111	109	2	0	0	0	0	0
...................................................AAAGTAAATAGTCTGGATTGATC...........................................................................................	23	1	1	103.00	103	103	0	0	0	0	0	0
...................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................	24	1	1	102.00	102	94	2	6	0	0	0	0
..................................................TAGAGTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	102.00	102	98	1	3	0	0	0	0
...................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................	23	1	1	98.00	98	88	4	1	2	3	0	0
..................................................TAAATTAAATAGTCTGGATTGA.............................................................................................	22	1	1	94.00	94	91	3	0	0	0	0	0
..................................................TAAATTAAATAGTCTGGATTGAT............................................................................................	23	1	1	92.00	92	88	1	2	1	0	0	0
..................................................TAAGGTAAATAGTCTGGATTGA.............................................................................................	22	1	1	91.00	91	89	0	1	1	0	0	0
...................................................AAAGTAAATAGTCTGGATTTATG...........................................................................................	23	1	1	91.00	91	81	9	0	0	1	0	0
...................................................AAAGTAAATAGTCTGGATTGATA...........................................................................................	23	1	1	91.00	91	91	0	0	0	0	0	0
..................................................TAAAGTAAATAGCCTGGATTGATGA..........................................................................................	25	1	1	90.00	90	87	1	2	0	0	0	0
..................................................TAAAGTAAGTAGTCTGGATTGATG...........................................................................................	24	1	1	88.00	88	84	1	2	0	1	0	0
..................................................TAAAGTAAATAGTCTGGATCGATG...........................................................................................	24	1	1	87.00	87	83	3	0	0	0	1	0
..................................................TAAAGTAAATAGTCTGGGTTGATG...........................................................................................	24	1	1	86.00	86	79	5	1	0	1	0	0
..................................................TAAAGTAAATAGTCTGGATTGCTG...........................................................................................	24	1	1	85.00	85	57	27	0	0	1	0	0
..................................................TAAAGTAAATAGCCTGGATTGAT............................................................................................	23	1	1	84.00	84	72	10	2	0	0	0	0
....................................................AAGTAAATAGTCTGGATTGATG...........................................................................................	22	0	1	83.00	83	78	0	1	4	0	0	0
..................................................TACAGTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	82.00	82	80	1	1	0	0	0	0
..................................................TAAGGTAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	78.00	78	69	3	4	1	1	0	0
..................................................TAAAGTAAATAGTCTTGATTG..............................................................................................	21	1	1	76.00	76	73	3	0	0	0	0	0
..................................................TAAAGTAAATAGCCTGGATTGA.............................................................................................	22	1	1	75.00	75	74	0	1	0	0	0	0
..................................................TAAAGGAAATAGTCTGGATTGAT............................................................................................	23	1	1	74.00	74	18	55	1	0	0	0	0
..................................................CAAAGTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	73.00	73	68	3	2	0	0	0	0
..................................................TAAAGTAAATAGTCTGGACTGATG...........................................................................................	24	1	1	72.00	72	68	2	2	0	0	0	0
..................................................TAAAGTAAATAGTCTAGATTGATG...........................................................................................	24	1	1	72.00	72	55	16	1	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTCATG...........................................................................................	24	1	1	71.00	71	66	2	2	0	1	0	0
..................................................TAAAGTAAATCGTCTGGATTGATG...........................................................................................	24	1	1	71.00	71	67	1	2	1	0	0	0
..................................................TAAAGTAGATAGTCTGGATTGATG...........................................................................................	24	1	1	70.00	70	68	0	2	0	0	0	0
..................................................TAAAGTAAATACTCTGGATTGATG...........................................................................................	24	1	1	69.00	69	67	0	0	2	0	0	0
..................................................TAAAGTAAATAGTCTGGCTTGATG...........................................................................................	24	1	1	69.00	69	61	5	2	0	1	0	0
..................................................TAAAGTAAATAGTCCGGATTGATGA..........................................................................................	25	1	1	68.00	68	65	0	2	0	1	0	0
..................................................TGAGGTAAATAGTCTGGATTGA.............................................................................................	22	2	1	68.00	68	61	5	2	0	0	0	0
...................................................AAAGTAAATAGTCTGGATTGATTA..........................................................................................	24	1	1	65.00	65	61	3	0	0	1	0	0
..................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................	24	1	1	65.00	65	61	4	0	0	0	0	0
..................................................TAAAGTGAATAGTCTGGATTGATG...........................................................................................	24	1	1	65.00	65	60	3	2	0	0	0	0
..................................................TGAAGTAAATAGTCTGGATTG..............................................................................................	21	1	1	63.00	63	58	1	3	1	0	0	0
.................................................CTAAAGTAAATAGTCTGGATTGAT............................................................................................	24	1	1	63.00	63	54	8	1	0	0	0	0
..................................................TAAAGTAAACAGTCTGGATTGATG...........................................................................................	24	1	1	63.00	63	61	1	0	1	0	0	0
..................................................TAAAGTAAATAGTCTCGATTGATG...........................................................................................	24	1	1	63.00	63	59	0	2	2	0	0	0
...................................................AAAGTAAATAGTCTGTATTGATG...........................................................................................	23	1	1	60.00	60	59	0	1	0	0	0	0
...................................................AAAGTAAATAGTCTTGATTGAT............................................................................................	22	1	1	60.00	60	58	0	1	1	0	0	0
..................................................TAAAGGAAATAGTCTGGATTGA.............................................................................................	22	1	1	60.00	60	32	24	2	2	0	0	0
..................................................TAAAGTAAATAGTCTGGATTAATG...........................................................................................	24	1	1	60.00	60	56	2	0	2	0	0	0
..................................................TAAAGTAAATAGTCTGGATT...............................................................................................	20	0	1	59.00	59	48	4	3	4	0	0	0
..................................................TAAGGTAAATAGTCTGGATTGAT............................................................................................	23	1	1	59.00	59	50	8	1	0	0	0	0
..................................................TAAAGCAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	58.00	58	54	1	1	1	1	0	0
..................................................TAAAGTAAATAGTCTGCATTGATG...........................................................................................	24	1	1	58.00	58	55	2	0	0	1	0	0
...................................................AAAGTAAATAGTCTTGATTGATGA..........................................................................................	24	1	1	58.00	58	57	0	1	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................	25	1	1	58.00	58	51	3	1	2	1	0	0
..................................................TAAAGGAAATAGTCTGGATTGATG...........................................................................................	24	1	1	57.00	57	38	14	3	1	1	0	0
.................................................CTAAAGTAAATAGTCTGGATTGA.............................................................................................	23	1	1	57.00	57	55	2	0	0	0	0	0
...................................................GAAGTAAATAGTCTGGATTGATG...........................................................................................	23	1	1	56.00	56	54	1	1	0	0	0	0
..................................................CAAAGTAAATAGTCTGGATTGA.............................................................................................	22	1	1	55.00	55	52	3	0	0	0	0	0
..................................................TAAAGTAAATAGTCCGGATTGA.............................................................................................	22	1	1	54.00	54	48	5	1	0	0	0	0
..................................................TAAAGTAAGTAGTCTGGATTGA.............................................................................................	22	1	1	54.00	54	49	5	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................	25	1	1	54.00	54	49	2	2	1	0	0	0
..................................................TAGAGTAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	54.00	54	54	0	0	0	0	0	0
..................................................TAAAGCAAATAGTCTGGATTGAT............................................................................................	23	1	1	53.00	53	39	11	3	0	0	0	0
..................................................TAAAGTAAATAGTCTGGGTTGAT............................................................................................	23	1	1	53.00	53	40	13	0	0	0	0	0
..................................................TAAAGTAAGTAGTCTGGATTGAT............................................................................................	23	1	1	52.00	52	43	9	0	0	0	0	0
..................................................TAGAGTAAATAGTCTGGATTGA.............................................................................................	22	1	1	51.00	51	49	1	1	0	0	0	0
.............................................................................................CATCAACAGGCATTTACTTCA...................................................	21	0	1	50.00	50	47	0	1	1	1	0	0
..................................................CAAAGTAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	50.00	50	49	1	0	0	0	0	0
.................................................CTAAAGTAAATAGTCTGGATTGATGA..........................................................................................	26	1	1	50.00	50	47	3	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGGTG...........................................................................................	24	1	1	50.00	50	50	0	0	0	0	0	0
..................................................TAAAGTAAATAGTCTAGATTGA.............................................................................................	22	1	1	49.00	49	26	22	1	0	0	0	0
..................................................TAAAGCAAATAGTCTGGATTGA.............................................................................................	22	1	1	49.00	49	42	6	1	0	0	0	0
..................................................TAAAGTAAATGGTCTGGATTGATG...........................................................................................	24	1	1	49.00	49	45	4	0	0	0	0	0
..................................................TGAGGTAAATAGTCTGGATTGATG...........................................................................................	24	2	1	49.00	49	44	1	4	0	0	0	0
..................................................TACAGTAAATAGTCTGGATTGA.............................................................................................	22	1	1	49.00	49	49	0	0	0	0	0	0
..................................................TAAAGTAAGTAGTCTGGATTGATGA..........................................................................................	25	1	1	48.00	48	46	1	1	0	0	0	0
..................................................TCAAGTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	48.00	48	48	0	0	0	0	0	0
..................................................TAAAGTAAATAGTTTGGATTGATG...........................................................................................	24	1	1	48.00	48	48	0	0	0	0	0	0
..................................................TAACGTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	48.00	48	44	1	1	2	0	0	0
..................................................TACAGTAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	47.00	47	47	0	0	0	0	0	0
..................................................TAAACTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	47.00	47	47	0	0	0	0	0	0
.......................................................TAAATAGTCTGGATTGATG...........................................................................................	19	0	1	47.00	47	47	0	0	0	0	0	0
..................................................TAAAGTAAATAATCTGGATTGATG...........................................................................................	24	1	1	46.00	46	40	2	1	2	1	0	0
..................................................TAAAGTAAATAGTCTGGACTGATGA..........................................................................................	25	1	1	45.00	45	44	0	1	0	0	0	0
.....................................................AGTAAATAGTCTGGATTGAT............................................................................................	20	0	1	45.00	45	42	3	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATCGA.............................................................................................	22	1	1	44.00	44	35	9	0	0	0	0	0
..................................................TAAAGTAAATAGTCCGGATTGAT............................................................................................	23	1	1	44.00	44	36	4	4	0	0	0	0
..................................................TAAAGTAAATAGTCTAGATTGAT............................................................................................	23	1	1	43.00	43	17	24	2	0	0	0	0
...................................................TAAGTAAATAGTCTGGATTGATG...........................................................................................	23	1	1	43.00	43	38	4	1	0	0	0	0
..................................................TAAAGTAAATAGTCTTGATTGATGAA.........................................................................................	26	1	1	41.00	41	41	0	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGCTTGA.............................................................................................	22	1	1	41.00	41	33	7	0	1	0	0	0
..................................................TAAAGTAAATAGTCTGGCTTGAT............................................................................................	23	1	1	41.00	41	24	15	0	2	0	0	0
...................................................AAAGTAAATAGTCTGGATTTA.............................................................................................	21	1	1	40.00	40	37	3	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATCGAT............................................................................................	23	1	1	40.00	40	29	10	1	0	0	0	0
...................................................AAAGTAAATAGTCTTGATTGA.............................................................................................	21	1	1	40.00	40	38	2	0	0	0	0	0
..................................................TAAAGTGAATAGTCTGGATTGAT............................................................................................	23	1	1	39.00	39	33	6	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGATAA..........................................................................................	25	1	1	39.00	39	32	3	2	1	1	0	0
...................................................AAAGTAAATAGTCTGGATTGATCA..........................................................................................	24	1	1	39.00	39	39	0	0	0	0	0	0
..................................................TAAAGTAAATAGACTGGATTGATG...........................................................................................	24	1	1	39.00	39	33	2	3	1	0	0	0
..................................................CAAAGTAAATAGTCTGGATTGAT............................................................................................	23	1	1	39.00	39	33	5	1	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGCT............................................................................................	23	1	1	38.00	38	9	26	3	0	0	0	0
..................................................TAAAGGAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	38.00	38	29	7	1	0	1	0	0
...................................................AAATTAAATAGTCTGGATTGATG...........................................................................................	23	1	1	38.00	38	38	0	0	0	0	0	0
..................................................TAAAGTAAATAGTCTAGATTGATGA..........................................................................................	25	1	1	38.00	38	32	4	0	0	2	0	0
...................................................AAAGTAAATATTCTGGATTGATG...........................................................................................	23	1	1	38.00	38	38	0	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGAATTGATG...........................................................................................	24	1	1	37.00	37	33	2	1	0	1	0	0
....................................................AAGTAAATAGTCTGGATTGA.............................................................................................	20	0	1	36.00	36	30	1	1	4	0	0	0
..................................................TAAAGTAAATAGTCTGCATTGA.............................................................................................	22	1	1	36.00	36	34	2	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATCGATGA..........................................................................................	25	1	1	36.00	36	34	2	0	0	0	0	0
..................................................TAAAGTAAATACTCTGGATTGA.............................................................................................	22	1	1	35.00	35	34	1	0	0	0	0	0
...................................................AAAGTAAATAGTATGGATTGATG...........................................................................................	23	1	1	35.00	35	35	0	0	0	0	0	0
..................................................TAAAGTAAATCGTCTGGATTGA.............................................................................................	22	1	1	35.00	35	34	1	0	0	0	0	0
..................................................TAAAGTAGATAGTCTGGATTGATGA..........................................................................................	25	1	1	35.00	35	33	0	1	0	1	0	0
..................................................TAAAGTAAATAGTCTGTATTG..............................................................................................	21	1	1	35.00	35	33	2	0	0	0	0	0
..................................................TATAGTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	35.00	35	34	0	0	0	1	0	0
..................................................TAAAGTAAATAGTCTGGGTTGATGA..........................................................................................	25	1	1	34.00	34	31	0	1	0	2	0	0
..................................................TAAAGTAAACAGTCTGGATTGA.............................................................................................	22	1	1	34.00	34	32	2	0	0	0	0	0
..................................................TAAAGTAACTAGTCTGGATTGATG...........................................................................................	24	1	1	34.00	34	33	0	1	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................	22	1	1	34.00	34	19	15	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................	22	1	1	34.00	34	23	8	2	1	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGGTGA..........................................................................................	25	1	1	33.00	33	31	0	2	0	0	0	0
..................................................TAGAGTAAATAGTCTGGATTGAT............................................................................................	23	1	1	33.00	33	29	2	1	1	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGCTGA..........................................................................................	25	1	1	33.00	33	29	1	3	0	0	0	0
..................................................TAAAGTAAATAGTCTCGATTGATGA..........................................................................................	25	1	1	33.00	33	32	0	0	0	1	0	0
..................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................	22	1	1	33.00	33	29	3	1	0	0	0	0
..................................................TACAGTAAATAGTCTGGATTGAT............................................................................................	23	1	1	32.00	32	30	2	0	0	0	0	0
...................................................AAAGTAAATAGTCTGGATTGATAA..........................................................................................	24	1	1	32.00	32	31	0	0	0	1	0	0
..................................................TAAAGTAAATAGTCTGGATTGACGAA.........................................................................................	26	1	1	32.00	32	32	0	0	0	0	0	0
...................................................GAAGTAAATAGTCTGGATTGATGA..........................................................................................	24	1	1	31.00	31	25	1	4	1	0	0	0
..................................................TAAAGTAAATCGTCTGGATTGATGA..........................................................................................	25	1	1	31.00	31	31	0	0	0	0	0	0
..................................................TAAAGTAAATACTCTGGATTGATGA..........................................................................................	25	1	1	31.00	31	30	0	1	0	0	0	0
...............................................................................................TCAACAGGCATTTACTTCAACA................................................	22	1	1	30.00	30	28	0	0	2	0	0	0
..................................................TAAAGTAAATAGTCTCGATTGA.............................................................................................	22	1	1	30.00	30	27	3	0	0	0	0	0
..................................................TAAAGTAGATAGTCTGGATTGA.............................................................................................	22	1	1	30.00	30	28	2	0	0	0	0	0
...................................................AAAGTAAATAGTCTGGATTTAT............................................................................................	22	1	1	30.00	30	27	3	0	0	0	0	0
..................................................TAAAGTAAATAGTATGGATTG..............................................................................................	21	1	1	30.00	30	30	0	0	0	0	0	0
..................................................TAAAGTAAATCGTCTGGATTGAT............................................................................................	23	1	1	30.00	30	23	5	1	1	0	0	0
.....................................................AGTAAATAGTCTGGATTGATGAA.........................................................................................	23	0	1	30.00	30	28	0	1	0	1	0	0
....................................................AAGTAAATAGTCTGGATTGAT............................................................................................	21	0	1	30.00	30	21	3	3	3	0	0	0
...................................................GAAGTAAATAGTCTGGATTGAT............................................................................................	22	1	1	30.00	30	27	1	2	0	0	0	0
..............................................................................................ATCAACAGGCATTTACTTCA...................................................	20	0	1	30.00	30	29	0	0	1	0	0	0
.............................................................................................CATCAACAGGCATTTACTTCAA..................................................	22	0	1	29.00	29	26	1	0	1	0	1	0
..................................................TAAAGTAAATAGTCTGAATTGA.............................................................................................	22	1	1	29.00	29	23	5	1	0	0	0	0
..................................................TAAAGTAAATAGGCTGGATTGATG...........................................................................................	24	1	1	29.00	29	24	1	1	2	1	0	0
....................................................AAGTAAATAGTCTGGATTGATGA..........................................................................................	23	0	1	29.00	29	27	1	0	1	0	0	0
..................................................TAAAGTAAATAGACTGGATTGA.............................................................................................	22	1	1	29.00	29	28	1	0	0	0	0	0
..................................................TAAAGTAAATAGGCTGGATTGAT............................................................................................	23	1	1	29.00	29	10	10	2	7	0	0	0
..............................................................................................ATCAACAGGCATTTACTTCAA..................................................	21	0	1	28.00	28	26	0	0	2	0	0	0
...................................................AAAGTAAATAGTATGGATTGAT............................................................................................	22	1	1	28.00	28	28	0	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGACTGA.............................................................................................	22	1	1	28.00	28	25	3	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGGTTGA.............................................................................................	22	1	1	28.00	28	27	1	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGAAGAA.........................................................................................	26	1	1	28.00	28	28	0	0	0	0	0	0
..............................................................................................ATCAACAGGCATTTACTTCAAC.................................................	22	0	1	28.00	28	2	0	0	8	1	17	0
.....................................................AGTAAATAGTCTGGATTGA.............................................................................................	19	0	1	28.00	28	25	3	0	0	0	0	0
..................................................TAAACTAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	28.00	28	27	0	1	0	0	0	0
..................................................TGGAGTAAATAGTCTGGATTGAT............................................................................................	23	2	1	28.00	28	22	5	1	0	0	0	0
..................................................TAAAGTAAATACTCTGGATTGAT............................................................................................	23	1	1	27.00	27	24	2	1	0	0	0	0
..................................................TAAAGTGAATAGTCTGGATTGATGA..........................................................................................	25	1	1	27.00	27	27	0	0	0	0	0	0
..................................................TAAAGTACATAGTCTGGATTGATG...........................................................................................	24	1	1	27.00	27	25	0	1	1	0	0	0
..................................................TGAGGTAAATAGTCTGGATTGATGA..........................................................................................	25	2	1	27.00	27	24	1	2	0	0	0	0
...................................................TAAGTAAATAGTCTGGATTGATGA..........................................................................................	24	1	1	27.00	27	26	0	1	0	0	0	0
..................................................TAAAGTAAATAGTCTGAATTGAT............................................................................................	23	1	1	27.00	27	17	8	2	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTTATT...........................................................................................	24	2	1	27.00	27	9	13	0	0	5	0	0
..................................................TAAAGTGAATAGTCTGGATTGA.............................................................................................	22	1	1	27.00	27	24	3	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTCA.............................................................................................	22	1	1	27.00	27	27	0	0	0	0	0	0
..................................................TAAAGTAAATGGTCTGGATTGAT............................................................................................	23	1	1	26.00	26	20	6	0	0	0	0	0
...................................................AAAGTAAATAGTCTTGATTGATGAA.........................................................................................	25	1	1	26.00	26	25	0	1	0	0	0	0
..................................................TAAAGTCAATAGTCTGGATTGATG...........................................................................................	24	1	1	26.00	26	23	2	0	1	0	0	0
...................................................AAAGTAAATAGTCTGGATTGATTAA.........................................................................................	25	1	1	26.00	26	25	0	0	0	1	0	0
..................................................TGGAGTAAATAGTCTGGATTGATG...........................................................................................	24	2	1	26.00	26	23	1	2	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGGT............................................................................................	23	1	1	26.00	26	21	4	0	1	0	0	0
..................................................TAAAGTAAATAGTCAGGATTGATG...........................................................................................	24	1	1	25.00	25	24	0	0	0	1	0	0
..................................................TAAAGTAAATAGTCTCGATTGAT............................................................................................	23	1	1	25.00	25	22	0	2	1	0	0	0
...................................................AAAGTAAATAGTCTGTATTGA.............................................................................................	21	1	1	25.00	25	24	0	1	0	0	0	0
..................................................TAAACTAAATAGTCTGGATTGA.............................................................................................	22	1	1	25.00	25	23	1	1	0	0	0	0
..................................................TAAAGTAAATAGTCTGCATTGATGA..........................................................................................	25	1	1	25.00	25	22	1	0	0	2	0	0
..................................................TAAAGTAAATAGTCTGGATTGATTAA.........................................................................................	26	1	1	25.00	25	20	4	0	0	1	0	0
..................................................TAAAGTAAATGGTCTGGATTGA.............................................................................................	22	1	1	25.00	25	23	2	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGAGGAA.........................................................................................	26	1	1	24.00	24	24	0	0	0	0	0	0
.......................................................TAAATAGTCTGGATTGATGA..........................................................................................	20	0	1	24.00	24	22	0	2	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTAA.............................................................................................	22	1	1	24.00	24	20	4	0	0	0	0	0
..................................................TAAAGTAAACAGTCTGGATTGATGA..........................................................................................	25	1	1	24.00	24	23	1	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTT..............................................................................................	21	1	1	23.00	23	19	4	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTCATGA..........................................................................................	25	1	1	23.00	23	23	0	0	0	0	0	0
..................................................GAAAGTAAATAGTCTGGATTGATG...........................................................................................	24	1	1	23.00	23	19	0	3	0	1	0	0
..................................................TAAAGTAAATAGTCTGAATTGATGA..........................................................................................	25	1	1	23.00	23	22	1	0	0	0	0	0
..................................................TAAAGTAAATAATCTGGATTGA.............................................................................................	22	1	1	23.00	23	23	0	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGCTTGATGA..........................................................................................	25	1	1	22.00	22	19	1	0	1	0	0	1
..................................................TATAGTAAATAGTCTGGATTGA.............................................................................................	22	1	1	22.00	22	21	0	0	0	1	0	0
..................................................TAAAGTAAATAGTTTGGATTGATGA..........................................................................................	25	1	1	22.00	22	20	1	0	0	1	0	0
..................................................TAAAGTAAACAGTCTGGATTGAT............................................................................................	23	1	1	22.00	22	18	4	0	0	0	0	0
...................................................AAAGTAAATAGTCTGGCTTGATG...........................................................................................	23	1	1	22.00	22	20	1	1	0	0	0	0
..................................................TAACGTAAATAGTCTGGATTGA.............................................................................................	22	1	1	22.00	22	21	0	0	1	0	0	0
..................................................TGAGGTAAATAGTCTGGATTGAT............................................................................................	23	2	1	21.00	21	18	1	2	0	0	0	0
..................................................TAAAGTAAATGGTCTGGATTGATGA..........................................................................................	25	1	1	21.00	21	19	1	1	0	0	0	0
...................................................AAAGTAAATAGTCTGTATTGATGA..........................................................................................	24	1	1	21.00	21	20	1	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTAAT............................................................................................	23	1	1	21.00	21	14	5	0	2	0	0	0
...................................................AAAGTAAATAGTCTGGATTTATGA..........................................................................................	24	1	1	21.00	21	20	0	0	0	1	0	0
..................................................TAAAGTAAATAGTCTGGATTTATGAA.........................................................................................	26	1	1	21.00	21	19	1	0	0	1	0	0
..................................................TAAAGTAAATAGTCTGGACTGAT............................................................................................	23	1	1	21.00	21	20	1	0	0	0	0	0
..................................................TGGAGTAAATAGTCTGGATTGA.............................................................................................	22	2	1	21.00	21	21	0	0	0	0	0	0
........................................................AAATAGTCTGGATTGATG...........................................................................................	18	0	1	20.00	20	18	0	1	1	0	0	0
..................................................TAAAGTAAATAATCTGGATTGATGA..........................................................................................	25	1	1	20.00	20	19	0	1	0	0	0	0
...................................................TAAGTAAATAGTCTGGATTGA.............................................................................................	21	1	1	20.00	20	19	1	0	0	0	0	0
..................................................TCAAGTAAATAGTCTGGATTGAT............................................................................................	23	1	1	20.00	20	19	1	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGAGTGATG...........................................................................................	24	1	1	20.00	20	15	5	0	0	0	0	0
...................................................AAAGTAAATAGTCTGGATTGATCAA.........................................................................................	25	1	1	20.00	20	20	0	0	0	0	0	0
..................................................TAAAGAAAATAGTCTGGATTGATG...........................................................................................	24	1	1	19.00	19	17	0	1	1	0	0	0
..................................................TAAAATAAATAGTCTGGATTGATG...........................................................................................	24	1	1	19.00	19	18	0	1	0	0	0	0
..................................................TAAAGTAGATAGTCTGGATTGAT............................................................................................	23	1	1	19.00	19	14	4	1	0	0	0	0
..................................................TATAGTAAATAGTCTGGATTGAT............................................................................................	23	1	1	19.00	19	17	1	1	0	0	0	0
..................................................TAACGTAAATAGTCTGGATTGAT............................................................................................	23	1	1	19.00	19	15	0	0	4	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGTTG...........................................................................................	24	1	1	19.00	19	10	9	0	0	0	0	0
..................................................TAACGTAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	19.00	19	18	0	0	1	0	0	0
..................................................TAAAGTAAATAGTCTGGTTTGATG...........................................................................................	24	1	1	19.00	19	18	1	0	0	0	0	0
...................................................AAAGTAAATAGTCTGGGTTGATG...........................................................................................	23	1	1	19.00	19	18	1	0	0	0	0	0
..................................................TAAAGTAAATAGACTGGATTGAT............................................................................................	23	1	1	18.00	18	12	4	2	0	0	0	0
..................................................TAAAGTAAATAGTCTGGAATGATG...........................................................................................	24	1	1	18.00	18	15	1	1	0	1	0	0
..................................................TAAAGTAAATAGTCTGGATTGATGAG.........................................................................................	26	1	1	18.00	18	18	0	0	0	0	0	0
...................................................AAAGTAAATAGTCTGTATTGAT............................................................................................	22	1	1	18.00	18	18	0	0	0	0	0	0
..................................................TAAAGTACATAGTCTGGATTGATGA..........................................................................................	25	1	1	18.00	18	16	1	1	0	0	0	0
..................................................TAAAGTACATAGTCTGGATTGAT............................................................................................	23	1	1	17.00	17	15	2	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGATTGATCA..........................................................................................	25	1	1	17.00	17	17	0	0	0	0	0	0
..................................................TCAAGTAAATAGTCTGGATTGA.............................................................................................	22	1	1	17.00	17	16	1	0	0	0	0	0
..................................................TAAAGTAAATAGTTTGGATTGA.............................................................................................	22	1	1	17.00	17	17	0	0	0	0	0	0
...................................................AAAGTAAATAGCCTGGATTGATG...........................................................................................	23	1	1	17.00	17	17	0	0	0	0	0	0
..................................................TAAAGTAAATAGTTTGGATTGAT............................................................................................	23	1	1	17.00	17	14	2	1	0	0	0	0
..................................................TAAAGTAACTAGTCTGGATTGATGA..........................................................................................	25	1	1	17.00	17	17	0	0	0	0	0	0
...................................................AAGGTAAATAGTCTGGATTGATG...........................................................................................	23	1	1	17.00	17	17	0	0	0	0	0	0
..................................................TAAAGTAAAAAGTCTGGATTGATG...........................................................................................	24	1	1	17.00	17	17	0	0	0	0	0	0
..................................................TAAAGAAAATAGTCTGGATTGATGA..........................................................................................	25	1	1	17.00	17	15	2	0	0	0	0	0
..................................................TAAAGTAAATAGTATGGATTGATGAA.........................................................................................	26	1	1	16.00	16	16	0	0	0	0	0	0
..................................................TAAAGTAACTAGTCTGGATTGA.............................................................................................	22	1	1	16.00	16	14	2	0	0	0	0	0
..................................................TGAAGTAAATAGTCTGGATTGATGAA.........................................................................................	26	1	1	16.00	16	15	0	1	0	0	0	0
..................................................TAAAGTAAATAGGCTGGATTGA.............................................................................................	22	1	1	16.00	16	11	3	0	2	0	0	0
...................................................AAAGTAAATAGTCTGTATTGATGAA.........................................................................................	25	1	1	16.00	16	16	0	0	0	0	0	0
...................................................TAAGTAAATAGTCTGGATTGAT............................................................................................	22	1	1	16.00	16	14	2	0	0	0	0	0
..................................................TAAAGTAAATATTCTGGATTGATGAA.........................................................................................	26	1	1	16.00	16	16	0	0	0	0	0	0
..................................................TAAAGTAATTAGTCTGGATTGATG...........................................................................................	24	1	1	16.00	16	15	0	1	0	0	0	0
..................................................TAAACTAAATAGTCTGGATTGAT............................................................................................	23	1	1	16.00	16	15	0	0	1	0	0	0
...................................................AAATTAAATAGTCTGGATTGATGA..........................................................................................	24	1	1	16.00	16	16	0	0	0	0	0	0
..................................................TAAAGTCAATAGTCTGGATTGA.............................................................................................	22	1	1	15.00	15	15	0	0	0	0	0	0
..................................................TAAAGTAAATAGTCTGGTTTGA.............................................................................................	22	1	1	15.00	15	8	5	2	0	0	0	0
...................................................AAAGTAAATAGTATGGATTGATGA..........................................................................................	24	1	1	15.00	15	15	0	0	0	0	0	0
..................................................TAAAGTAACTAGTCTGGATTGAT............................................................................................	23	1	1	15.00	15	11	3	0	1	0	0	0

CGCCTTTGCCTTTACGCTCCTCGCCTTCTGCTTGTTACAACCTGACACAAATTTCATTTATCAGACCTAACTACTTTCAACGTAAGCTCTTAAGTAGTTGTCCGTAAATGAAGTTGACGTCAAACTTGCTTTACGTTGTCCTTTTATTGCTCACGCGTCACTTAA **********************************...((((((((((((..((((((((.(((((..((((((((..(((....)))...))))))))))))))))))))).))).)))))))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V040 embryo
..........................................TTACCCAAATTTCATTTATC.......................................................................................................	20	2	3	0.33	1	1
...................................TACTAACTGACACACATTTC..............................................................................................................	20	3	8	0.13	1	1
.............................................CCCAAATTTCATTTACCATA....................................................................................................	20	3	20	0.05	1	1

Species	Coordinate	ID	Type	Alignment
droEre2	scaffold_4929:17456313-17456477 +	der_2	confident	--GC------------------------------------GGAA------ACGGAAATGCGAGG-------------------AGC-------------------------------------------------GG-----------------------------------A-AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-T------------T---------------
droYak3	2L:17856033-17856197 -	dya_3	confident	--GC------------------------------------GGAA------ACGGAAATACGAGG-------------------AGC-------------------------------------------------GG-----------------------------------A-AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAGTAAC-GAGTGC--GCAGTGAT-T------------T---------------
droSec2	scaffold_1:2832494-2832658 -	dse_6	confident	--GC------------------------------------GGAA------ACGGAAATACGAGG-------------------AGC-------------------------------------------------GG-----------------------------------A-AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-T------------T---------------
droSim2	2r:6003587-6003751 -	dsi-mir-987	Known_mirbase	--GC------------------------------------GGAA------ACGGAAATACGAGG-------------------AGC-------------------------------------------------GG-----------------------------------A-AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-T------------T---------------
dm3	chr2R:5200493-5200657 -	dme-mir-987	Known_mirbase	--GC------------------------------------GGAA------ACGGAAATACGAGG-------------------AGC-------------------------------------------------GG-----------------------------------A-AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-T------------T---------------
droEug1	scf7180000409183:843247-843423 -			--GC------------------------------------GGAA------ACGGAAATAAAAAC-------------------AGC-------------------------------------------------GG-----------------------------------A-AGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-AATTTTGTACTTAT---------------
droBia1	scf7180000301506:1518984-1519153 +			--GC------------------------------------GGAA------ACGGAAATAAAAACAAG-------------A-GAAC-------------------------------------------------GC-----------------------------------A-AGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAGATAAC-GAGTGC--GCAGTGAA-T------------T---------------
droTak1	scf7180000415401:224113-224283 -			--GC------------------------------------GGAA------ACGGAAATACAAAAAAT-------------AACAAC-------------------------------------------------GG-----------------------------------A-GAATGT--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATTCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-T------------T---------------
droEle1	scf7180000491201:1028348-1028516 -			--GC------------------------------------GGAA------ACGGAAATAAAAAC-------------------AGC-------------------------------------------------GGG----------------------------------C-AGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAAT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGATAATAAC-GAGTGC--GCAGTGAA-TATT---------T---------------
droRho1	scf7180000780118:109598-109774 +			--GC------------------------------------GGAA------ACGGAAATGAAAAC-------------------AGC-------------------------------------------------GGG----------------------------------A-AGATGAAAAAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGATAATAAC-GAGTGC--GCAGTGAA-TGTT---TACTTAT---------------
droFic1	scf7180000453851:1071690-1071857 +			--GC------------------------------------GGAA------ACGGAAATAAAAAC-------------------AGC-------------------------------------------------GG-----------------------------------G-CGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-TCAA---------T---------------
droKik1	scf7180000302470:1981095-1981253 -			AAGC------------------------------------GGAA------AC-------------------------------AGC-------------------------------------------------GG-----------------------------------A-AGTTAA--ACTATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCTAACGAAATGCAACT----------------------------GGATAATAAC-GAGTGC--GCAGTGAAATTTT---------T---------------
droAna3	scaffold_12430:12674-12858 +	dan_2	confident	--GC------------------------------------GGAA------ACGGAAATGCAAAAAAAATGGGACTAAGAAAGAAAC-------------------------------------------------GG-----------------------------------AAAAATGT--ACAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATTCAACA----------------------------GGATAATAAC-GAGTGC--GTAGTGAA-T------------A---------------
droBip1	scf7180000396759:441141-441335 -			--GC------------------------------------GGAA------ACGGAAATGCAAAAAAA--GGGACCAAGAAAAAAGC-------------------------------------------------GG-----------------------------------AAATATGT--ACAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAACTCAACA----------------------------GGATAATAAC-GAGTGC--GTAGTGAA-CGTTTTTTAGTTTT---------------
dp5	3:9267881-9268136 -	dps-mir-987	Known_mirbase	--ACAAACGAAATACAAAAAGTGGAAACGGACACGGGAACGGAAACGGAAACGGAAAC-------------------------GGC--TGCCGTAACCGT-----------AACCATATCCATAACCGAAACACCGGGAAATGCAACACGAACACACACAG-----------------AA--ATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACT----------------------------GGATAACAAC-GAGCGT--GCAGTGAA-T------------C---------------
droPer2	scaffold_4:4590304-4590559 -	dpe_169	confident	--ACAAACGAAATACAAAAAGTGGAAACGGACACGGGAACGGAAACGGAAACGGAAAC-------------------------GGC--TGCCGTAACCGT-----------AACCATATCCATAACCGAAACACCGGGAAATGCAACACGAACACACACAG-----------------AA--ATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACT----------------------------GGATAACAAC-GAGCGT--GCAGTGAA-T------------C---------------
droWil2	scf2_1100000004510:853132-853370 +	dwi_3	confident	--AC------------------------------------GGAA------ATGTAAACGTGTCG-------------------CGC------GTATCTGTCAAATACATATAAATATATA--------------------------------TATACATAGAGAGAGAAGGAG-AGATC---ATAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAAAAATGAAAAGAAAAAAAATGAAAAAAAGGATAATAACAGCGCGT--GCAGTGAA-T------------C---------------
droVir3	scaffold_12875:1241617-1241789 -	dvi-mir-987	Known_mirbase	--AC------------------------------------GGAA------ACAGAA-----------------------------CGC-----------------------------------------------GCG----------------------------------T-CGCTCA--CAAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------GAAGAAG-----GATTCGAAGCGTGAAATG-----------TGCCAAAAAAAAAAAA
droMoj3	scaffold_6496:4307017-4307195 -	dmo_150	confident	--AC------------------------------------GGAA------CCGGAAGCGGTCCATTAATGG-------CGAATAACGG-----------------------------------------------ATA----------------------------------T-C-GCGAATAAACTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGTTTATATCTAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------GAAGCAG-AC-AA------ACGGTGAAATG-----------T---------------
droGri2	scaffold_15245:9744745-9744859 +	dgr_34	candidate-rescued	--C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------AAAGAA----------------GTGA---------------T---------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

--GC------------------------------------GGAA------ACGGAAATGCGAGG-------------------AGC-------------------------------------------------GG-----------------------------------A-AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-T------------T---------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	86227.00	86227	444	23	2282	233	2538	80707	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	40626.00	40626	114	12	760	280	1179	38281	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	40396.00	40396	184	1	2484	9	1113	36605	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	35509.00	35509	371	7	4447	11	1525	29148	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	10700.00	10700	85	5	276	17	423	9894	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	5642.00	5642	102	0	654	0	193	4693	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	5148.00	5148	68	0	490	1	219	4370	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	4258.00	4258	19	1	92	26	151	3969	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	3760.00	3760	29	0	198	0	126	3407	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	3147.00	3147	6	0	62	14	81	2984	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	1784.00	1784	4	0	30	11	60	1679	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	1021.00	1021	6	0	20	3	38	954	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	466.00	466	1	0	62	25	4	374	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTG..........................................................................................................................................................	20	1	407.00	407	8	0	37	0	18	344	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	23	1	340.00	340	2	0	9	0	6	323	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	329.00	329	1	0	0	0	0	328	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATG.......................................................................................................................................................	21	1	299.00	299	2	0	12	0	8	277	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	269.00	269	3	0	10	1	13	242	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	200.00	200	0	0	6	0	8	186	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	26	1	154.00	154	0	0	1	0	9	144	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	23	1	149.00	149	1	0	1	0	0	147	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.....................................................................................................................................................	26	1	115.00	115	1	0	0	1	3	110	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGA......................................................................................................................................................	22	1	111.00	111	0	0	2	3	4	102	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	23	1	103.00	103	0	0	0	0	0	103	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	24	1	102.00	102	0	0	2	0	6	94	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	23	1	98.00	98	2	0	4	3	1	88	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	23	1	91.00	91	0	0	0	0	0	91	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	22	1	83.00	83	4	0	0	0	1	78	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	24	1	65.00	65	0	0	4	0	0	61	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATT...........................................................................................................................................................	20	1	59.00	59	4	0	4	0	3	48	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	25	1	58.00	58	2	0	3	1	1	51	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	25	1	54.00	54	1	0	2	0	2	49	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	50.00	50	1	0	0	1	1	47	0
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATG.......................................................................................................................................................	19	1	47.00	47	0	0	0	0	0	47	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	45.00	45	0	0	3	0	0	42	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGA.........................................................................................................................................................	20	1	36.00	36	4	0	1	0	1	30	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	22	1	34.00	34	0	0	15	0	0	19	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.........................................................................................................................................................	22	1	34.00	34	1	0	8	0	2	23	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	22	1	33.00	33	0	0	3	0	1	29	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCAACA...........................................................................................................	22	1	30.00	30	2	0	0	0	0	28	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	23	1	30.00	30	0	0	0	1	1	28	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGAT........................................................................................................................................................	21	1	30.00	30	3	0	3	0	3	21	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..............................................................................................................	20	1	30.00	30	1	0	0	0	0	29	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.............................................................................................................	22	1	29.00	29	1	1	1	0	0	26	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	23	1	29.00	29	1	0	1	0	0	27	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.............................................................................................................	21	1	28.00	28	2	0	0	0	0	26	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC............................................................................................................	22	1	28.00	28	8	17	0	1	0	2	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGA.........................................................................................................................................................	19	1	28.00	28	0	0	3	0	0	25	0
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATGA......................................................................................................................................................	20	1	24.00	24	0	0	0	0	2	22	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTT..........................................................................................................................................................	21	1	23.00	23	0	0	4	0	0	19	0
..............................................................................................................................................................................................................AAATAGTCTGGATTGATG.......................................................................................................................................................	18	1	20.00	20	1	0	0	0	1	18	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAG.....................................................................................................................................................	26	1	18.00	18	0	0	0	0	0	18	0

droYak3

--GC------------------------------------GGAA------ACGGAAATACGAGG-------------------AGC-------------------------------------------------GG-----------------------------------A-AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAGTAAC-GAGTGC--GCAGTGAT-T------------T---------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	30159.00	30159	23751	309	84	107	831	4313	761	0	0	1	2
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	16433.00	16433	7212	184	22	2	1442	7105	464	1	0	1	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	9666.00	9666	4936	101	4	0	796	3518	311	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	4504.00	4504	1044	116	70	201	433	2181	353	0	0	1	105
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	3691.00	3691	2992	43	4	4	72	505	71	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	2016.00	2016	880	31	1	1	183	862	58	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	1554.00	1554	160	64	0	0	268	994	68	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	941.00	941	548	18	1	0	64	291	19	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	22	1	717.00	717	709	1	0	0	0	7	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	456.00	456	137	21	4	15	48	198	30	0	0	0	3
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	359.00	359	188	1	1	0	69	97	3	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	295.00	295	42	2	0	10	31	182	28	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATT...........................................................................................................................................................	20	1	282.00	282	242	6	0	0	5	28	1	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	264.00	264	249	0	4	0	2	8	1	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAT............................................................................................................................................................	19	1	223.00	223	222	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	197.00	197	170	0	0	0	8	16	3	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	175.00	175	24	0	4	6	16	115	10	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	25	1	171.00	171	158	2	1	2	2	6	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	163.00	163	32	0	1	0	12	89	28	0	0	0	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTG..........................................................................................................................................................	20	1	111.00	111	14	8	0	0	19	69	1	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATG.......................................................................................................................................................	21	1	91.00	91	61	2	0	0	6	21	1	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	21	1	80.00	80	79	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	23	1	49.00	49	25	0	0	0	4	19	1	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.........................................................................................................................................................	22	1	44.00	44	5	1	0	0	3	35	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	22	1	38.00	38	1	0	0	0	1	36	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	24	1	34.00	34	33	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	22	1	33.00	33	33	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	23	1	30.00	30	23	0	0	0	0	7	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	23	1	30.00	30	24	1	0	0	0	5	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	29.00	29	9	0	1	0	3	16	0	0	0	0	0
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATG.......................................................................................................................................................	19	1	28.00	28	26	0	0	0	0	1	1	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	27.00	27	13	1	0	0	1	11	1	0	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	22	1	27.00	27	17	6	0	0	1	2	1	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGAT............................................................................................................................................................	18	1	24.00	24	24	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATT...........................................................................................................................................................	19	1	24.00	24	21	0	0	0	0	3	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.....................................................................................................................................................	26	1	23.00	23	7	1	0	0	3	9	3	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	23	1	23.00	23	10	1	0	0	5	7	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	25	1	23.00	23	3	0	0	0	2	18	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAC............................................................................................................................................................	19	1	17.00	17	17	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	26	1	17.00	17	7	1	0	0	0	7	2	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC............................................................................................................	22	1	17.00	17	6	2	8	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTT..........................................................................................................................................................	21	1	16.00	16	1	0	0	0	5	10	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGA......................................................................................................................................................	22	1	16.00	16	5	0	0	1	6	4	0	0	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.............................................................................................................	22	1	13.00	13	2	2	0	1	2	6	0	0	0	0	0
.............................................................................................................................................................................................................TAAATAGTCTGGATTGAT........................................................................................................................................................	18	1	11.00	11	8	0	0	0	1	1	1	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAC.....................................................................................................................................................	26	1	11.00	11	3	0	1	0	1	6	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	24	1	10.00	10	8	0	0	0	0	2	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGA.............................................................................................................................................................	18	1	10.00	10	8	1	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	24	1	10.00	10	0	0	0	0	1	7	2	0	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGA.........................................................................................................................................................	20	1	9.00	9	5	3	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	7.00	7	1	0	0	1	3	2	0	0	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	23	1	6.00	6	0	4	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGAC............................................................................................................................................................	18	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AAATAGTCTGGATTGATG.......................................................................................................................................................	18	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.............................................................................................................	21	1	5.00	5	0	1	1	0	2	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..............................................................................................................	20	1	5.00	5	0	2	0	0	0	3	0	0	0	0	0

droSec2

--GC------------------------------------GGAA------ACGGAAATACGAGG-------------------AGC-------------------------------------------------GG-----------------------------------A-AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-T------------T---------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	44033.00	44033	211	2680	2052	39090
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	24351.00	24351	105	1450	53	22743
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	21777.00	21777	64	1175	3287	17251
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	13300.00	13300	161	1040	116	11983
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	5644.00	5644	50	252	144	5198
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	5345.00	5345	91	350	6	4898
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	2947.00	2947	23	142	9	2773
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	2602.00	2602	10	111	318	2163
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	2208.00	2208	36	115	7	2050
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	1657.00	1657	1	117	209	1330
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	1126.00	1126	0	50	170	906
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	704.00	704	2	60	17	625
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTG..........................................................................................................................................................	20	1	560.00	560	15	25	0	520
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATG.......................................................................................................................................................	21	1	183.00	183	1	5	2	175
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATT...........................................................................................................................................................	20	1	180.00	180	12	17	0	151
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	117.00	117	0	12	1	104
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	96.00	96	2	12	9	73
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	24	1	83.00	83	1	4	0	78
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	23	1	73.00	73	2	5	0	66
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	26	1	72.00	72	0	5	5	62
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	71.00	71	2	2	3	64
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.........................................................................................................................................................	22	1	61.00	61	0	6	0	55
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.....................................................................................................................................................	26	1	50.00	50	0	10	3	37
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	22	1	42.00	42	0	3	1	38
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGA......................................................................................................................................................	22	1	41.00	41	0	3	9	29
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGA.........................................................................................................................................................	19	1	37.00	37	2	2	0	33
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	22	1	36.00	36	2	1	6	27
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	34.00	34	2	0	0	32
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	25	1	31.00	31	0	2	3	26
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	22	1	25.00	25	0	2	0	23
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	23	1	25.00	25	0	1	14	10
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	25.00	25	0	0	2	23
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	25	1	23.00	23	0	1	2	20
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATG.......................................................................................................................................................	19	1	20.00	20	0	0	2	18
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGAT........................................................................................................................................................	21	1	19.00	19	1	3	0	15
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAT............................................................................................................................................................	19	1	18.00	18	2	2	0	14
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	24	1	17.00	17	0	1	2	14
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	23	1	17.00	17	1	1	0	15
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGA.........................................................................................................................................................	20	1	15.00	15	1	0	0	14
.................................................................................................................................................................................................................................AAGT-TGCATTCGAGAATTC..................................................................................................................................	19	1	15.00	15	0	0	13	2
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATT...........................................................................................................................................................	19	1	14.00	14	0	0	0	14
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATGA......................................................................................................................................................	20	1	14.00	14	0	0	7	7
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGA.............................................................................................................................................................	18	1	14.00	14	1	1	0	12
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	23	1	12.00	12	3	1	1	7
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATG...........................................................................................................................................................	20	1	11.00	11	0	0	0	11
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAC.....................................................................................................................................................	26	1	11.00	11	0	2	1	8
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGTT.....................................................................................................................................................	26	1	10.00	10	0	1	0	9
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTT..........................................................................................................................................................	21	1	10.00	10	3	0	0	7
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..............................................................................................................	20	1	10.00	10	0	0	0	10
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAG.....................................................................................................................................................	26	1	9.00	9	0	0	0	9
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	9.00	9	0	0	0	9
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	22	1	9.00	9	0	0	0	9
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.............................................................................................................	22	1	8.00	8	0	0	2	6
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	23	1	7.00	7	1	0	0	6
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	24	1	7.00	7	1	1	0	5
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	23	1	6.00	6	0	1	0	5

droSim2

--GC------------------------------------GGAA------ACGGAAATACGAGG-------------------AGC-------------------------------------------------GG-----------------------------------A-AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-T------------T---------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	50953.00	50953	46851	1547	1327	32	2	324	40	416	72	53	3	258	7	21	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	17578.00	17578	14862	383	101	21	26	1736	37	221	80	56	2	10	11	29	1	0	2
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	15856.00	15856	13999	300	98	23	18	1138	30	146	23	23	0	5	27	25	0	0	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	7513.00	7513	7042	235	102	9	0	12	7	52	11	9	0	19	4	11	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	4534.00	4534	2152	70	206	7	12	424	45	908	184	152	4	350	3	17	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	3295.00	3295	1144	36	9	23	36	1990	3	20	6	3	0	0	5	20	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	2884.00	2884	2338	74	8	4	8	412	8	21	1	1	0	0	1	8	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATT...........................................................................................................................................................	20	1	2532.00	2532	1946	41	3	0	8	532	0	0	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	2520.00	2520	2340	51	7	1	4	88	3	10	2	1	0	1	5	7	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAT............................................................................................................................................................	19	1	2244.00	2244	599	14	7	0	26	1598	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	22	1	1842.00	1842	1754	70	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGA.............................................................................................................................................................	18	1	1599.00	1599	57	3	0	0	32	1506	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	594.00	594	320	11	17	4	0	34	8	114	26	25	1	29	0	5	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	582.00	582	562	9	6	1	0	0	0	0	1	0	0	3	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	509.00	509	493	12	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	25	1	391.00	391	318	13	57	0	0	0	0	0	0	0	0	3	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	349.00	349	327	9	1	0	0	0	2	5	1	4	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGAT............................................................................................................................................................	18	1	323.00	323	104	0	1	0	2	216	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	313.00	313	61	10	4	1	2	108	9	73	14	13	0	18	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	21	1	292.00	292	283	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATG.......................................................................................................................................................	21	1	265.00	265	249	7	1	1	0	2	1	0	1	0	0	2	0	1	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATT...........................................................................................................................................................	19	1	220.00	220	160	4	0	0	4	52	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTG..........................................................................................................................................................	20	1	209.00	209	110	1	0	2	2	88	0	1	0	0	0	0	1	4	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	179.00	179	54	1	7	1	0	36	4	25	11	14	0	26	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	109.00	109	100	3	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	22	1	84.00	84	80	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.........................................................................................................................................................	22	1	76.00	76	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	23	1	73.00	73	69	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	73.00	73	61	2	0	0	0	0	0	6	0	0	0	1	1	2	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	60.00	60	17	0	2	1	0	0	7	29	0	4	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGA.........................................................................................................................................................	19	1	60.00	60	50	2	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	23	1	60.00	60	58	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATG.......................................................................................................................................................	19	1	52.00	52	47	2	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC............................................................................................................	22	1	50.00	50	16	0	0	0	0	34	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	24	1	49.00	49	42	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAC............................................................................................................................................................	19	1	45.00	45	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	23	1	37.00	37	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	26	1	34.00	34	19	1	0	0	0	2	2	8	0	0	0	2	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	23	1	31.00	31	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	22	1	30.00	30	29	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	24	1	28.00	28	25	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..............................................................................................................	20	1	26.00	26	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	24.00	24	0	0	0	0	0	24	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGA......................................................................................................................................................	22	1	22.00	22	2	0	4	0	0	10	0	1	4	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.....................................................................................................................................................	26	1	20.00	20	10	0	3	0	0	0	0	5	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAAC............................................................................................................	23	1	17.00	17	1	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCAAC............................................................................................................	21	1	17.00	17	3	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTC...............................................................................................................	19	1	15.00	15	7	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	22	1	14.00	14	11	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTC...............................................................................................................	20	1	13.00	13	11	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	22	1	12.00	12	10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATC...........................................................................................................................................................	20	1	12.00	12	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATG...........................................................................................................................................................	20	1	11.00	11	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACT.................................................................................................................	18	1	11.00	11	1	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	25	1	10.00	10	9	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCA..............................................................................................................	19	1	10.00	10	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGAT........................................................................................................................................................	21	1	10.00	10	8	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	22	1	10.00	10	9	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AAATAGTCTGGATTGATG.......................................................................................................................................................	18	1	10.00	10	9	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGA.........................................................................................................................................................	20	1	10.00	10	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGAC............................................................................................................................................................	18	1	8.00	8	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAAA.......................................................................................................................................................	24	1	8.00	8	5	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0
............................................................................................................................................................................................................GTAAATAGTCTGGATTGA.........................................................................................................................................................	18	1	7.00	7	6	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.............................................................................................................	21	1	6.00	6	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	24	1	6.00	6	5	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCAACT...........................................................................................................	22	1	6.00	6	2	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTAAATAGTCTGGATTGAT........................................................................................................................................................	19	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTAAATAGTCTGGATTGATG.......................................................................................................................................................	20	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	2	0	1	1	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAAA...................................................................................................................................................	27	1	5.00	5	1	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTG..........................................................................................................................................................	18	1	5.00	5	2	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAAA...................................................................................................................................................	28	1	5.00	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAC.....................................................................................................................................................	26	1	5.00	5	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAC.....................................................................................................................................................	25	1	5.00	5	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGG.........................................................................................................................................................	19	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAC........................................................................................................................................................	20	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	24	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTC...............................................................................................................	18	1	4.00	4	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TAAATAGTCTGGATTGAT........................................................................................................................................................	18	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGTT.....................................................................................................................................................	26	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGAC.....................................................................................................................................................	23	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAT.....................................................................................................................................................	25	1	4.00	4	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAG............................................................................................................................................................	19	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCAA.............................................................................................................	20	1	4.00	4	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CGA--ACAATGTTGGACTGTGTT...............................................................................................................................................................................	21	1	4.00	4	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAGA.......................................................................................................................................................	24	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTAAATAGTCTGGATTGATGA......................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GACGA--ACAATGTTGGACTGTGTT...............................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

--GC------------------------------------GGAA------ACGGAAATACGAGG-------------------AGC-------------------------------------------------GG-----------------------------------A-AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-T------------T---------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	254101.00	254101	0	0	0	0	516	3	0	2	0	3	2	14	5	0	33	1	0	12	19	0	0	1	3	0	0	13	151	16	110	93	1486	1800	78	82	3	2	6	2	2	4	1	1	11	1	6	5	9	8	2	2	8	3	4	0	0	0	4	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	189	17	0	1	3	0	0	3	6	5	29	725	8	53	3191	73	196	12	16	30	70	5334	7	2	0	76	1	24	43	27	53	10	14	1	106	20	336	487	4	635	5	218	495	2179	45	384	308	441	401	0	0	0	0	0	0	0	0	0	0	5	0	5	2	5	1	2	4	3	0	11	7	8	0	2	0	0	1	0	0	262	0	97	418	79	131	1710	2306	0	1760	41	16	975	2110	102	1651	127	1999	235	3849	2872	0	22	22	642	4	1810	14	6	14	7	0	0	0	7	2	32	7	0	0	0	0	0	4	4	0	0	0	0	0	0	1346	1390	677	1	27	13	70	36	29	21	35	23	67	22	29	2	2	0	1	3	1	0	0	139	58	0	306	3969	138	0	1	7	1142	4025	6	439	18	3	0	9	15	14051	6	0	1	5	6	1	1	1	1	3	2	4	2	0	2	18	41	20	87	4	49	0	12	883	8	6	4	25	12422	16076	14835	16464	99	1914	3516	1509	9	99	9	30	37	72	2825	26	2470	3375	11	8	15	25	28	27	10	16	5	8	2	17	51	10	21	0	1103	93906	2254	850	2681	2146	1458	2	39	16	73	13	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	207517.00	207517	0	0	0	0	87	3	1	0	0	1	0	4	1	0	19	0	0	10	56	0	0	0	2	0	0	7	784	5	41	91	2567	3029	13	11	1	0	2	1	0	1	1	2	0	1	4	0	3	2	0	2	3	2	1	0	0	0	6	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	69	8	0	0	0	0	0	0	9	7	16	330	3	20	702	26	72	1	1	10	18	1552	11	2	0	18	7	7	9	8	26	2	0	1	34	27	785	346	10	306	3	189	222	959	16	747	85	1249	842	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	2	3	0	0	3	8	0	0	0	4	0	0	0	0	0	1021	34	287	289	188	207	3065	4294	0	3457	16	5	2003	3396	100	2746	47	5003	9	9368	198	28	78	179	235	0	4063	19	6	6	0	0	0	0	4	0	14	0	0	0	0	0	0	1	4	0	0	0	0	0	0	1377	680	416	2	24	11	38	13	19	22	40	17	40	11	39	2	0	0	1	0	0	0	0	27	10	0	212	1680	65	1	1	1	678	1455	2	282	0	0	1	1	4	1901	10	0	4	1	2	4	2	0	1	6	0	5	4	1	0	14	82	46	163	14	74	13	26	1288	5	4	4	66	20006	34795	25064	30409	19	530	3536	1532	8	149	1	14	19	30	2666	12	2467	3118	8	4	5	16	18	2	1	2	2	0	0	2	6	3	0	0	208	14847	403	151	209	201	209	0	5	0	9	4	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	130765.00	130765	0	0	0	0	12	0	0	0	0	0	0	0	0	0	7	0	0	1	7	0	0	0	3	1	0	8	250	2	29	36	1132	1218	12	9	0	1	1	0	0	0	0	0	9	1	2	2	0	1	1	1	4	0	0	0	0	0	21	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	4	0	0	0	0	0	0	0	1	6	57	0	3	81	1	18	0	0	0	1	316	3	0	0	0	0	0	1	0	5	1	0	0	3	32	406	671	2	210	2	304	324	1319	25	470	46	684	490	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	5	0	2	2	2	0	0	1	0	0	177	4	97	102	28	27	1734	2204	0	1454	7	2	898	1462	41	1295	35	3069	30	4606	953	41	31	47	299	3	1969	1	3	6	2	0	0	0	1	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	412	236	153	3	21	4	37	8	7	4	14	2	7	2	2	0	0	0	2	1	3	0	0	7	1	1	212	2443	93	0	0	2	653	2593	3	333	1	1	0	2	4	1792	2	0	2	0	2	1	0	0	0	2	0	0	1	0	0	14	29	17	75	9	42	2	14	556	1	1	1	50	14595	14593	16158	17884	9	80	622	213	0	63	5	8	4	10	1541	10	570	669	5	2	13	5	8	7	2	2	1	0	0	2	7	0	3	0	235	23183	495	132	238	320	230	7	5	0	9	2	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	82274.00	82274	0	0	0	0	118	2	0	0	0	6	3	3	1	0	1	0	0	9	13	0	0	2	3	0	0	3	0	1	9	22	625	796	4	5	3	4	5	0	1	1	0	1	7	5	4	2	7	7	7	1	1	7	3	0	0	0	11	6	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	59	4	0	2	6	0	0	0	3	5	21	209	5	58	824	16	47	19	12	29	46	1681	2	0	0	31	14	9	5	7	49	4	23	1	48	4	163	53	3	101	2	79	66	304	6	158	27	141	148	0	0	0	0	0	0	2	0	2	0	1	0	1	0	11	1	3	0	8	0	8	2	18	0	0	0	0	0	0	0	71	0	64	107	16	56	980	1225	0	859	5	1	401	912	23	683	10	1166	6	2230	128	0	18	11	245	0	668	15	3	7	1	0	0	0	2	0	14	0	0	0	0	0	0	6	3	0	0	6	0	0	0	554	587	237	8	40	22	34	33	27	22	38	33	39	16	35	2	0	0	1	53	41	0	0	161	89	0	150	1517	63	2	2	6	498	1607	1	239	9	3	0	4	20	3878	5	1	1	8	6	2	2	1	2	3	3	4	1	0	0	2	28	13	76	7	38	6	29	621	8	4	1	12	5350	6870	6713	7307	299	1798	1194	478	5	50	33	73	52	112	1023	3	857	1072	2	5	23	18	23	33	5	13	2	1	2	10	27	9	27	0	302	18831	495	321	667	473	417	0	39	12	56	11	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	49908.00	49908	0	0	0	0	3	0	0	0	0	0	0	0	0	0	20	1	0	2	2	0	0	0	0	1	0	2	81	0	21	18	480	475	10	9	9	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	31	14	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	14	0	2	30	1	2	0	0	0	2	91	0	0	0	0	0	0	4	1	0	0	0	0	0	3	253	45	2	31	0	75	14	46	0	169	26	363	242	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	31	8	14	22	24	22	565	970	0	342	6	0	225	544	18	510	24	1186	15	1433	141	13	9	31	42	0	506	0	2	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	92	42	27	0	3	2	9	5	1	0	1	0	2	1	4	0	0	0	0	0	0	0	0	1	0	0	65	596	12	0	0	1	146	1833	1	79	0	0	0	1	0	218	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	2	3	1	14	2	6	1	4	84	0	0	1	17	4942	3714	6775	8938	2	13	155	52	1	92	1	0	2	3	362	1	192	246	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	131	11416	114	31	25	47	55	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	32933.00	32933	0	0	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	9	0	0	0	1	0	0	3	131	3	8	10	427	518	0	5	0	0	0	0	0	0	1	0	0	0	1	0	2	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	2	23	0	1	31	0	8	0	0	0	0	210	0	0	0	0	0	0	1	0	2	0	0	0	1	3	115	47	1	41	0	52	32	132	2	30	1	35	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	134	7	16	65	15	12	691	769	0	644	1	3	288	591	10	464	9	1117	0	2138	40	0	7	36	51	0	797	1	0	0	0	0	0	0	6	0	3	0	0	0	0	0	0	0	2	0	0	0	0	0	0	143	63	52	1	1	2	9	2	5	2	7	1	7	4	6	1	0	0	1	0	0	0	0	1	2	0	29	348	9	0	0	1	106	249	0	41	1	1	0	0	0	348	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	1	19	7	44	4	17	0	6	233	0	1	0	7	3197	4640	3908	5590	4	60	387	154	2	27	0	6	1	6	390	2	332	461	1	7	3	4	4	0	0	0	0	1	0	0	1	0	2	0	29	1937	56	15	26	24	21	0	1	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	32212.00	32212	0	0	0	0	51	0	0	0	0	0	0	6	0	0	2	0	0	0	5	0	0	0	0	0	0	2	34	5	13	13	276	357	8	12	0	0	0	0	0	2	2	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	2	0	0	0	0	0	0	1	1	0	53	1	6	313	7	9	1	1	1	5	588	2	1	0	6	0	5	3	4	3	0	0	0	3	2	78	105	0	121	0	59	126	440	3	18	3	22	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	15	0	14	40	8	20	393	483	0	397	5	5	181	433	14	316	16	423	55	988	680	0	3	0	42	2	426	1	0	2	0	0	0	0	0	0	3	0	0	0	0	0	0	2	2	0	0	0	0	0	0	84	59	57	0	3	3	10	4	0	3	2	3	8	0	4	1	0	0	0	1	0	0	0	8	4	0	34	477	17	0	0	3	206	583	0	81	3	1	0	0	1	2439	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	11	2	19	0	5	0	5	89	0	0	0	7	1633	2152	1894	2718	8	239	530	203	2	21	3	4	2	12	358	1	350	446	1	1	3	1	3	1	2	1	0	0	0	1	2	1	1	0	129	8522	233	60	279	207	137	1	3	2	3	2	0
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....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.............................................................................................................	22	1	209.00	209	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	3	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	3	0	2	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	1	0	0	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	17	18	0	16	0	0	2	8	0	3	1	13	0	14	0	0	2	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	8	19	5	11	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGA......................................................................................................................................................	22	1	194.00	194	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	3	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	5	0	0	3	7	0	4	0	2	0	2	0	0	0	0	2	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	10	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	4	1	0	2	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	27	0	0	0	0	2	6	1	11	0	5	11	6	0	0	0	0	0	1	4	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	8	0	0	0	2	1	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATT...........................................................................................................................................................	19	1	163.00	163	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	4	0	0	7	16	0	1	1	0	1	1	0	0	0	7	0	3	5	0	9	0	1	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	6	0	4	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	43	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGA.............................................................................................................................................................	18	1	152.00	152	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	10	4	0	2	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	3	30	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	6	1	0	3	5	0	10	0	0	13	13	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	6	7	2	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAT............................................................................................................................................................	19	1	150.00	150	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	4	1	4	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	1	0	0	0	0	0	1	4	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	8	0	3	3	1	0	4	4	1	5	1	1	6	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	2	2	3	0	1	2	0	0	1	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGA.........................................................................................................................................................	19	1	146.00	146	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	1	0	5	0	7	0	7	4	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	12	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	16	5	19	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0

droEug1

--GC------------------------------------GGAA------ACGGAAATAAAAAC-------------------AGC-------------------------------------------------GG-----------------------------------A-AGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-AATTTTGTACTTAT---------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

--GC------------------------------------GGAA------ACGGAAATAAAAACAAG-------------A-GAAC-------------------------------------------------GC-----------------------------------A-AGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAGATAAC-GAGTGC--GCAGTGAA-T------------T---------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

--GC------------------------------------GGAA------ACGGAAATACAAAAAAT-------------AACAAC-------------------------------------------------GG-----------------------------------A-GAATGT--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATTCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-T------------T---------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--GC------------------------------------GGAA------ACGGAAATAAAAAC-------------------AGC-------------------------------------------------GGG----------------------------------C-AGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAAT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGATAATAAC-GAGTGC--GCAGTGAA-TATT---------T---------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

--GC------------------------------------GGAA------ACGGAAATGAAAAC-------------------AGC-------------------------------------------------GGG----------------------------------A-AGATGAAAAAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGATAATAAC-GAGTGC--GCAGTGAA-TGTT---TACTTAT---------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

--GC------------------------------------GGAA------ACGGAAATAAAAAC-------------------AGC-------------------------------------------------GG-----------------------------------G-CGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGAAAATAAC-GAGTGC--GCAGTGAA-TCAA---------T---------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAGC------------------------------------GGAA------AC-------------------------------AGC-------------------------------------------------GG-----------------------------------A-AGTTAA--ACTATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCTAACGAAATGCAACT----------------------------GGATAATAAC-GAGTGC--GCAGTGAAATTTT---------T---------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

--GC------------------------------------GGAA------ACGGAAATGCAAAAAAAATGGGACTAAGAAAGAAAC-------------------------------------------------GG-----------------------------------AAAAATGT--ACAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATTCAACA----------------------------GGATAATAAC-GAGTGC--GTAGTGAA-T------------A---------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	35651.00	35651	113	28	46	1741	1135	32588
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	21708.00	21708	75	2	2	2619	622	18388
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	19827.00	19827	37	32	38	795	484	18441
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	15463.00	15463	101	12	1	3501	770	11078
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	3441.00	3441	29	2	2	163	60	3185
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	3339.00	3339	17	2	0	360	45	2915
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	3218.00	3218	46	1	0	808	192	2171
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	3096.00	3096	41	4	0	587	87	2377
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	1632.00	1632	7	2	2	84	24	1513
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	1195.00	1195	1	1	2	60	34	1097
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	856.00	856	0	0	2	33	57	764
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	842.00	842	0	0	3	26	16	797
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	484.00	484	3	0	4	55	14	408
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTG..........................................................................................................................................................	20	1	469.00	469	8	0	0	99	8	354
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	123.00	123	0	0	0	8	3	112
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATG.......................................................................................................................................................	21	1	79.00	79	1	0	0	4	2	72
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATT...........................................................................................................................................................	20	1	65.00	65	2	1	0	24	14	24
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	64.00	64	0	0	0	2	1	61
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.....................................................................................................................................................	26	1	56.00	56	0	0	0	0	3	53
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	23	1	54.00	54	2	0	0	3	2	47
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	24	1	53.00	53	0	0	0	3	4	46
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.........................................................................................................................................................	22	1	50.00	50	2	0	0	26	5	17
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	26	1	44.00	44	0	0	0	4	1	39
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	24	1	42.00	42	0	0	0	5	3	34
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	22	1	41.00	41	0	0	0	8	2	31
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTT..........................................................................................................................................................	21	1	39.00	39	0	0	0	5	2	32
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	23	1	37.00	37	0	0	0	7	2	28
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGA......................................................................................................................................................	22	1	33.00	33	0	0	0	3	0	30
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	22	1	29.00	29	0	0	0	26	0	3
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTA..........................................................................................................................................................	21	1	25.00	25	0	0	0	0	2	23
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	23	1	24.00	24	1	0	0	7	0	16
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	25	1	24.00	24	0	1	1	2	0	20
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	20.00	20	0	0	0	1	0	19
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATG.......................................................................................................................................................	19	1	19.00	19	0	0	0	0	1	18
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..............................................................................................................	20	1	18.00	18	1	0	0	1	0	16
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.............................................................................................................	22	1	17.00	17	0	0	0	3	0	14
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	17.00	17	0	0	0	7	1	9
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	22	1	15.00	15	0	0	0	1	1	13
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	23	1	15.00	15	0	0	0	1	0	14
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGA.........................................................................................................................................................	20	1	14.00	14	2	0	0	1	0	11
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATT...........................................................................................................................................................	19	1	14.00	14	0	0	0	7	0	7
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC............................................................................................................	22	1	13.00	13	2	8	1	0	0	2
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	25	1	13.00	13	0	0	0	2	0	11
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGT.........................................................................................................................................................	21	1	12.00	12	0	0	0	3	2	7
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	22	1	11.00	11	0	0	0	3	0	8
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	11.00	11	0	1	0	5	0	5
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATGA......................................................................................................................................................	20	1	10.00	10	0	1	0	0	0	9
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGA.........................................................................................................................................................	19	1	10.00	10	0	0	0	1	0	9
...................................................................................................................................................................................T--ACAATGTTGGACTGTGCT...............................................................................................................................................................................	19	1	10.00	10	0	0	0	5	0	5
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTC..........................................................................................................................................................	21	1	9.00	9	0	0	0	1	2	6
............................................................................................................................................................................................................GTAAATAGTCTGGATTGATG.......................................................................................................................................................	20	1	8.00	8	0	0	1	0	0	7
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	23	1	8.00	8	0	0	1	0	0	7
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAT............................................................................................................................................................	19	1	7.00	7	0	0	0	2	3	2
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	21	1	7.00	7	0	0	0	3	0	4
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGTT.....................................................................................................................................................	26	1	7.00	7	0	0	0	0	1	6

droBip1

--GC------------------------------------GGAA------ACGGAAATGCAAAAAAA--GGGACCAAGAAAAAAGC-------------------------------------------------GG-----------------------------------AAATATGT--ACAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAACTCAACA----------------------------GGATAATAAC-GAGTGC--GTAGTGAA-CGTTTTTTAGTTTT---------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

--ACAAACGAAATACAAAAAGTGGAAACGGACACGGGAACGGAAACGGAAACGGAAAC-------------------------GGC--TGCCGTAACCGT-----------AACCATATCCATAACCGAAACACCGGGAAATGCAACACGAACACACACAG-----------------AA--ATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACT----------------------------GGATAACAAC-GAGCGT--GCAGTGAA-T------------C---------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	6895.00	6895	45	615	59	1105	283	3566	677	0	52	493
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	6480.00	6480	20	258	25	1521	7	4159	266	1	35	188
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	3013.00	3013	14	202	10	327	2	2087	299	0	7	65
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	2269.00	2269	4	144	36	107	367	1115	294	1	18	183
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	1081.00	1081	7	127	4	222	18	549	61	0	5	88
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	1016.00	1016	2	167	1	30	1	730	76	0	4	5
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	1010.00	1010	5	83	1	221	0	631	43	0	12	14
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	353.00	353	4	54	0	33	1	231	24	0	2	4
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	310.00	310	0	30	7	17	27	174	23	0	1	31
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	190.00	190	0	6	1	19	8	107	36	0	8	5
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	147.00	147	0	0	0	145	0	2	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	123.00	123	1	5	0	53	2	49	2	0	4	7
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	115.00	115	0	4	0	0	25	62	12	0	0	12
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	109.00	109	0	6	0	4	7	55	30	0	0	7
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTG..........................................................................................................................................................	20	1	103.00	103	0	38	0	1	0	58	5	0	0	1
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC............................................................................................................	22	1	85.00	85	0	4	33	48	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATT...........................................................................................................................................................	20	1	47.00	47	1	10	0	13	0	18	3	0	2	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	22	1	33.00	33	3	16	0	3	1	7	3	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	31.00	31	0	0	0	17	1	11	1	0	0	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	22	1	25.00	25	0	0	0	25	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	24	1	19.00	19	0	2	0	3	0	9	4	0	0	1
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.........................................................................................................................................................	22	1	16.00	16	0	0	0	2	0	14	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	24	1	16.00	16	0	1	0	5	0	9	1	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGAT........................................................................................................................................................	21	1	15.00	15	0	8	0	1	0	4	1	0	0	1
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAT............................................................................................................................................................	19	1	13.00	13	3	1	0	7	0	2	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	23	1	13.00	13	0	2	0	0	0	9	1	0	0	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATT...........................................................................................................................................................	19	1	11.00	11	0	5	0	0	0	2	0	0	0	4
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	25	1	10.00	10	0	1	0	2	1	5	1	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATG.......................................................................................................................................................	21	1	8.00	8	0	1	0	2	0	4	1	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.............................................................................................................	22	1	7.00	7	0	1	1	1	1	3	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	7.00	7	0	0	0	0	1	5	1	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	2	1	0	0	3
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	23	1	6.00	6	0	1	0	2	0	2	0	0	0	1
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	22	1	6.00	6	0	0	0	1	0	5	0	0	0	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCAAC............................................................................................................	21	1	6.00	6	0	0	1	5	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	6.00	6	0	1	1	0	2	2	0	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGA.........................................................................................................................................................	20	1	6.00	6	0	4	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	6.00	6	0	3	0	0	0	2	1	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	22	1	5.00	5	1	0	0	0	0	3	1	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGA......................................................................................................................................................	22	1	5.00	5	0	1	0	0	2	2	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTT..........................................................................................................................................................	21	1	4.00	4	0	1	0	1	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..............................................................................................................	20	1	4.00	4	0	1	2	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................AAGT-TATATTCAAGAATTC..................................................................................................................................	19	1	4.00	4	0	1	1	1	1	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	25	1	4.00	4	0	0	0	2	1	1	0	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAAC............................................................................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAACA...........................................................................................................	23	1	3.00	3	0	0	1	1	1	0	0	0	0	0
..............................................................................................................................................................................................................AAATAGTCTGGATTGATGA......................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	3
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.............................................................................................................	21	1	3.00	3	0	0	1	0	2	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGTT.....................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	2	1	0	0	0
............................................................................................................................................................................................................GTAAATAGTCTGGATTGAT........................................................................................................................................................	19	1	3.00	3	0	0	0	2	0	1	0	0	0	0
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATG.......................................................................................................................................................	19	1	3.00	3	0	2	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................................AAATAGTCTGGATTGAT........................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	2

droPer2

--ACAAACGAAATACAAAAAGTGGAAACGGACACGGGAACGGAAACGGAAACGGAAAC-------------------------GGC--TGCCGTAACCGT-----------AACCATATCCATAACCGAAACACCGGGAAATGCAACACGAACACACACAG-----------------AA--ATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACT----------------------------GGATAACAAC-GAGCGT--GCAGTGAA-T------------C---------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	11561.00	11561	52	73	13	5629	5135	659
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	10084.00	10084	546	67	95	4453	3527	1396
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	4994.00	4994	26	43	1	2179	2170	575
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	3907.00	3907	45	26	62	1664	1435	675
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	1471.00	1471	2	15	0	674	702	78
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	1261.00	1261	0	23	0	549	625	64
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	1128.00	1128	39	15	11	524	365	174
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	434.00	434	3	6	10	183	152	80
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	418.00	418	1	8	0	160	199	50
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	321.00	321	0	0	1	128	105	87
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	229.00	229	0	0	1	79	83	66
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	161.00	161	1	0	4	55	61	40
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	93.00	93	4	0	0	35	52	2
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTG..........................................................................................................................................................	20	1	90.00	90	0	7	0	29	49	5
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	49.00	49	0	2	0	19	24	4
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATT...........................................................................................................................................................	20	1	37.00	37	5	5	1	13	13	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	23	1	35.00	35	0	0	0	18	16	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	24	1	34.00	34	0	0	0	15	11	8
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.........................................................................................................................................................	22	1	24.00	24	0	0	0	8	16	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	24	1	20.00	20	0	0	0	9	11	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	25	1	19.00	19	14	0	0	0	5	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	22	1	16.00	16	0	0	0	5	11	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATG.......................................................................................................................................................	21	1	14.00	14	0	0	0	8	6	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	12.00	12	2	0	0	2	8	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGA......................................................................................................................................................	22	1	12.00	12	0	0	1	2	5	4
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	25	1	11.00	11	0	0	0	8	1	2
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGAT........................................................................................................................................................	21	1	11.00	11	0	0	0	8	3	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	22	1	11.00	11	0	1	0	1	9	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.............................................................................................................	22	1	9.00	9	0	1	0	2	6	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAT............................................................................................................................................................	19	1	9.00	9	5	0	0	0	4	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	8.00	8	0	1	0	2	5	0
............................................................................................................................................................................................................GTAAATAGTCTGGATTGATG.......................................................................................................................................................	20	1	8.00	8	0	0	0	4	0	4
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	7.00	7	0	0	2	0	5	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	22	1	7.00	7	2	1	0	2	2	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	6.00	6	0	0	0	1	3	2
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	23	1	6.00	6	0	0	0	1	5	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	23	1	6.00	6	0	0	0	1	4	1
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGA.............................................................................................................................................................	18	1	5.00	5	0	0	0	0	5	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	22	1	5.00	5	0	0	0	1	4	0
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATGA......................................................................................................................................................	20	1	5.00	5	0	0	0	3	0	2
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATT...........................................................................................................................................................	19	1	4.00	4	0	0	0	1	3	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..............................................................................................................	20	1	4.00	4	0	0	0	2	2	0

droWil2

--AC------------------------------------GGAA------ATGTAAACGTGTCG-------------------CGC------GTATCTGTCAAATACATATAAATATATA--------------------------------TATACATAGAGAGAGAAGGAG-AGATC---ATAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAAAAATGAAAAGAAAAAAAATGAAAAAAAGGATAATAACAGCGCGT--GCAGTGAA-T------------C---------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	275455.00	275455	62869	249	539	2263	209535
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	63257.00	63257	3524	74	283	4858	54518
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	36310.00	36310	13557	170	305	211	22067
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	29781.00	29781	6961	47	46	126	22601
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	29516.00	29516	19692	193	325	184	9122
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	5706.00	5706	378	19	13	277	5019
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	3770.00	3770	1333	31	13	5	2388
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	3726.00	3726	146	6	32	543	2999
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	3334.00	3334	820	78	59	18	2359
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	2967.00	2967	1842	29	36	14	1046
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	1865.00	1865	74	0	6	5	1780
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	1661.00	1661	68	1	11	312	1269
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	22	1	1493.00	1493	1469	0	1	0	23
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	914.00	914	420	2	4	2	486
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATG.......................................................................................................................................................	21	1	836.00	836	237	3	3	2	591
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATT...........................................................................................................................................................	20	1	766.00	766	735	4	3	1	23
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAT............................................................................................................................................................	19	1	641.00	641	641	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	611.00	611	385	0	1	5	220
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	25	1	593.00	593	500	0	0	2	91
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	401.00	401	390	0	0	0	11
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	25	1	396.00	396	5	0	0	2	389
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTG..........................................................................................................................................................	20	1	322.00	322	52	12	2	0	256
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	24	1	215.00	215	21	1	0	2	191
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGA......................................................................................................................................................	22	1	182.00	182	11	0	2	7	162
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	22	1	178.00	178	12	2	1	1	162
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	24	1	160.00	160	4	0	1	0	155
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	149.00	149	34	0	0	18	97
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATG.......................................................................................................................................................	19	1	145.00	145	67	0	0	0	78
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	21	1	138.00	138	136	0	0	0	2
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	23	1	106.00	106	69	0	4	1	32
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	26	1	98.00	98	16	0	3	15	64
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	23	1	83.00	83	36	0	0	0	47
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	24	1	66.00	66	64	0	0	0	2
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAG.....................................................................................................................................................	26	1	62.00	62	3	0	0	2	57
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.....................................................................................................................................................	26	1	62.00	62	9	0	0	2	51
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTATG........................................................................................................................................................	23	1	58.00	58	0	0	0	1	57
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	56.00	56	45	0	1	0	10
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	23	1	54.00	54	1	4	0	1	48
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	23	1	54.00	54	3	0	1	27	23
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.............................................................................................................	22	1	52.00	52	5	0	0	15	32
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	24	1	52.00	52	13	0	0	1	38
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGA.............................................................................................................................................................	18	1	47.00	47	44	0	0	0	3
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	44.00	44	1	1	0	8	34
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATT...........................................................................................................................................................	19	1	44.00	44	38	1	0	0	5
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGAT............................................................................................................................................................	18	1	43.00	43	42	1	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	22	1	43.00	43	42	0	0	0	1
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC............................................................................................................	22	1	41.00	41	16	2	0	5	18
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	23	1	39.00	39	21	0	0	0	18
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGA.........................................................................................................................................................	19	1	38.00	38	14	0	1	0	23
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	23	1	36.00	36	33	0	0	0	3
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	22	1	33.00	33	1	0	0	0	32
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAC............................................................................................................................................................	19	1	33.00	33	33	0	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGA.........................................................................................................................................................	20	1	31.00	31	3	1	1	0	26
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATG...........................................................................................................................................................	20	1	28.00	28	1	0	0	0	27
..................................................................................................................................................................................C---ATAATGTTGAACTGTGCT...............................................................................................................................................................................	19	1	28.00	28	26	0	0	1	1
.............................................................................................................................................................................................................TAAATAGTCTGGATTGAT........................................................................................................................................................	18	1	28.00	28	25	0	0	1	2
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATGA......................................................................................................................................................	20	1	27.00	27	7	0	0	4	16
............................................................................................................................................................................................................GTAAATAGTCTGGATTGATG.......................................................................................................................................................	20	1	26.00	26	7	2	0	0	17
..............................................................................................................................................................................................................AAATAGTCTGGATTGATG.......................................................................................................................................................	18	1	25.00	25	10	1	0	0	14
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	23	1	24.00	24	0	0	0	0	24
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCAACT...........................................................................................................	22	1	24.00	24	6	0	0	0	18
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..............................................................................................................	20	1	23.00	23	0	0	1	5	17
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAC.....................................................................................................................................................	26	1	20.00	20	4	0	0	1	15
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.............................................................................................................	21	1	19.00	19	1	0	0	2	16

droVir3

--AC------------------------------------GGAA------ACAGAA-----------------------------CGC-----------------------------------------------GCG----------------------------------T-CGCTCA--CAAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------GAAGAAG-----GATTCGAAGCGTGAAATG-----------TGCCAAAAAAAAAAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	14781.00	14781	69	2068	178	48	1	18	0	29	0	35	0	0	0	0	1449	632	400	1097	670	585	24	507	1357	2	0	0	1	3	129	183	38	118	1	16	0	0	0	0	1	76	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	7	2	106	19	22	4470	345	0	0	0	11	5	0	0	32	0	0	1	2	0	5	3	5	8
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	13362.00	13362	218	6246	227	50	2	25	0	146	1	79	4	0	0	0	338	175	84	261	103	124	34	81	607	3	0	0	2	2	117	105	32	111	0	24	0	1	0	0	2	93	0	1	3	0	0	0	0	0	0	0	1	0	0	0	0	4	1	36	20	315	2841	706	0	0	0	0	2	1	6	77	13	8	10	7	0	2	4	5	2
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	8384.00	8384	51	2063	144	8	1	6	0	85	2	32	0	0	0	0	337	212	153	285	244	122	6	162	429	0	0	0	0	0	67	69	22	77	0	11	1	0	0	0	0	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	9	3	5	3326	389	0	0	0	0	0	0	1	19	2	1	1	2	0	0	1	2	1
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	3568.00	3568	12	255	83	13	1	12	2	36	2	40	0	0	1	0	212	105	69	166	71	101	13	53	320	0	0	0	1	2	59	55	13	77	0	18	0	0	0	1	1	49	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	5	239	1173	297	2	0	0	0	1	0	0	0	0	2	1	0	0	0	0	0	2
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	3029.00	3029	3	150	133	0	0	2	0	0	0	1	0	0	0	0	103	93	64	94	125	55	1	70	128	0	0	0	0	0	6	14	2	11	0	7	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1839	111	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	917.00	917	24	421	27	3	0	5	0	6	0	3	0	0	0	0	33	14	1	13	10	5	2	12	42	0	0	0	0	0	11	9	3	9	0	5	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	15	209	22	0	0	0	0	2	0	0	2	3	1	0	2	0	0	0	0	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	898.00	898	8	158	23	2	0	2	0	3	0	6	0	0	0	0	60	33	23	51	41	16	1	18	53	0	0	0	0	0	17	22	1	20	0	2	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	319	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATT...........................................................................................................................................................	20	1	581.00	581	9	450	13	0	0	1	0	0	0	0	0	0	0	0	5	3	5	1	10	7	0	3	5	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	62	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	484.00	484	6	140	21	0	0	1	0	6	0	2	0	0	0	0	10	7	6	7	9	6	1	7	20	0	0	0	0	0	5	7	1	8	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	196	12	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	24	1	481.00	481	9	5	1	0	0	16	0	0	0	16	0	0	0	0	0	0	0	1	0	0	20	0	1	0	0	0	0	0	133	95	18	79	0	13	0	0	0	0	0	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	14	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	22	1	349.00	349	7	333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	265.00	265	0	6	2	1	0	0	0	4	2	1	0	0	0	0	13	5	6	10	7	9	1	4	33	0	0	0	0	0	5	2	0	7	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	101	28	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	247.00	247	1	14	13	0	0	2	0	9	0	3	0	0	0	0	12	7	3	16	1	9	0	3	21	0	0	0	0	0	3	8	0	4	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	91	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	142.00	142	0	45	1	0	0	0	0	0	0	0	0	0	0	0	3	2	3	3	5	3	0	0	5	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	35	31	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTG..........................................................................................................................................................	20	1	134.00	134	0	3	18	0	0	0	0	0	0	0	0	0	0	0	7	4	0	3	5	2	0	3	4	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	73	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	101.00	101	0	57	1	0	0	0	0	2	0	1	0	0	0	0	2	0	1	5	2	1	1	1	3	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	13	4	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAT............................................................................................................................................................	19	1	94.00	94	3	86	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	84.00	84	1	1	0	0	0	0	0	5	0	2	0	0	0	0	8	2	1	2	1	4	0	0	5	0	0	0	0	0	1	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	34	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	82.00	82	0	0	0	1	0	1	0	3	0	2	0	0	0	0	9	2	1	4	1	2	0	0	9	0	0	0	0	0	3	3	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	27	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	79.00	79	1	66	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	25	1	51.00	51	1	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	23	1	50.00	50	0	6	0	0	0	0	0	0	0	1	0	0	0	0	0	2	2	5	1	1	0	3	5	0	0	0	0	0	1	1	2	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATG.......................................................................................................................................................	21	1	41.00	41	0	22	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATCC......................................................................................................................................................	25	1	35.00	35	2	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	7	8	1	8	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.........................................................................................................................................................	22	1	34.00	34	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGA.............................................................................................................................................................	18	1	31.00	31	0	10	0	0	0	0	0	0	0	0	0	0	0	0	6	2	2	2	1	1	0	3	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..............................................................................................................	20	1	28.00	28	0	0	2	0	0	0	0	0	0	0	0	0	0	0	5	1	2	4	3	1	0	4	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	21	1	27.00	27	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	23	1	25.00	25	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	5	3	3	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	22.00	22	0	8	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	21.00	21	0	0	2	0	0	0	0	0	0	0	0	0	0	0	4	1	1	1	3	1	0	3	2	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	22	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.............................................................................................................	21	1	19.00	19	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	3	2	1	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.............................................................................................................	22	1	19.00	19	0	0	1	0	0	0	0	0	0	0	0	0	0	0	5	0	0	1	4	1	0	3	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATT...........................................................................................................................................................	19	1	18.00	18	0	12	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	17.00	17	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTAAATAGTCTGGATTGAT........................................................................................................................................................	19	1	16.00	16	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	25	1	16.00	16	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AGTCTGGATTGATGA......................................................................................................................................................	15	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TAAATAGTCTGGATTGATG.......................................................................................................................................................	19	1	15.00	15	0	9	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCAACA...........................................................................................................	22	1	15.00	15	0	2	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	3	0	0	1	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TAAATAGTCTGGATTGAT........................................................................................................................................................	18	1	13.00	13	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCAA.............................................................................................................	20	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	1	1	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CA--CAAATGTTGAACTGTGCT...............................................................................................................................................................................	20	1	13.00	13	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	26	1	13.00	13	0	1	1	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................ATAGTCTGGATTGATG.......................................................................................................................................................	16	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC............................................................................................................	22	1	12.00	12	1	0	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	23	1	12.00	12	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTT..........................................................................................................................................................	21	1	11.00	11	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGA......................................................................................................................................................	22	1	10.00	10	0	0	1	1	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGAT........................................................................................................................................................	21	1	10.00	10	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.....................................................................................................................................................	26	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	22	1	9.00	9	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCA..............................................................................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGA.........................................................................................................................................................	19	1	8.00	8	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAC............................................................................................................................................................	19	1	7.00	7	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	23	1	7.00	7	0	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGAT............................................................................................................................................................	18	1	7.00	7	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	23	1	7.00	7	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATCT......................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCAACT...........................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAAA.......................................................................................................................................................	24	1	6.00	6	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATC...........................................................................................................................................................	20	1	5.00	5	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGTCC....................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTC..........................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	24	1	5.00	5	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGACC....................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

--AC------------------------------------GGAA------CCGGAAGCGGTCCATTAATGG-------CGAATAACGG-----------------------------------------------ATA----------------------------------T-C-GCGAATAAACTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGTTTATATCTAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------GAAGCAG-AC-AA------ACGGTGAAATG-----------T---------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	8346.00	8346	453	2	1909	5219	18	745
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	6790.00	6790	353	63	1179	3586	30	1579
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	5528.00	5528	257	2	1203	3276	4	786
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	4314.00	4314	124	137	739	2284	35	995
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	1870.00	1870	165	0	522	1064	0	119
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	359.00	359	46	0	67	219	2	25
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	325.00	325	4	4	72	186	0	59
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	273.00	273	40	1	45	142	2	43
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	259.00	259	36	0	50	153	0	20
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	205.00	205	6	0	24	92	0	83
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	168.00	168	6	1	109	46	0	6
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	140.00	140	15	3	21	62	3	36
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTG..........................................................................................................................................................	20	1	114.00	114	23	0	24	60	0	7
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATT...........................................................................................................................................................	20	1	78.00	78	16	0	20	36	0	6
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	66.00	66	3	3	8	32	0	20
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	40.00	40	2	0	9	26	0	3
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	33.00	33	1	0	4	24	0	4
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.........................................................................................................................................................	22	1	30.00	30	3	0	5	18	0	4
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA........................................................................................................................................................	23	1	27.00	27	3	0	3	19	0	2
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC............................................................................................................	22	1	25.00	25	1	0	0	0	24	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	20.00	20	2	0	4	11	3	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTT..........................................................................................................................................................	21	1	16.00	16	1	0	13	2	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC.......................................................................................................................................................	24	1	14.00	14	2	0	2	1	1	8
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.........................................................................................................................................................	22	1	10.00	10	1	0	3	6	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC......................................................................................................................................................	25	1	10.00	10	0	0	2	3	0	5
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGAT............................................................................................................................................................	19	1	10.00	10	3	0	2	4	0	1
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	10.00	10	1	0	3	5	0	1
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.........................................................................................................................................................	22	1	9.00	9	0	0	5	4	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	9.00	9	1	0	3	4	0	1
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGA.........................................................................................................................................................	20	1	9.00	9	3	0	2	4	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.....................................................................................................................................................	26	1	8.00	8	0	0	1	5	0	2
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG......................................................................................................................................................	25	1	8.00	8	0	0	2	5	0	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATT...........................................................................................................................................................	19	1	8.00	8	3	0	1	4	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..............................................................................................................	20	1	6.00	6	1	0	2	1	2	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	24	1	6.00	6	1	0	2	2	0	1
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAAA.......................................................................................................................................................	24	1	6.00	6	1	0	0	4	0	1
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGAT........................................................................................................................................................	21	1	6.00	6	3	0	1	2	0	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTG..........................................................................................................................................................	19	1	5.00	5	4	0	0	1	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	26	1	5.00	5	0	0	0	4	0	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGAT............................................................................................................................................................	18	1	4.00	4	0	0	0	4	0	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTT..........................................................................................................................................................	20	1	4.00	4	0	0	4	0	0	0
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.............................................................................................................	22	1	4.00	4	0	0	0	3	1	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	23	1	4.00	4	0	0	2	2	0	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGATG.......................................................................................................................................................	21	1	3.00	3	1	0	0	2	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGA.............................................................................................................................................................	18	1	3.00	3	0	0	1	2	0	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAAA...................................................................................................................................................	28	1	3.00	3	0	0	1	1	0	1
.............................................................................................................................................................................................................TAAATAGTCTGGATTGAT........................................................................................................................................................	18	1	3.00	3	0	0	1	2	0	0
.....................................................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.............................................................................................................	21	1	3.00	3	0	0	0	0	3	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGTC.....................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	3
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAG.....................................................................................................................................................	26	1	3.00	3	0	0	1	2	0	0
......................................................................................................................................................................................................................................................TCAACAGGCATTTACTTCA..............................................................................................................	19	1	3.00	3	1	0	2	0	0	0

droGri2

--C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------AAAGAA----------------GTGA---------------T---------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	24	1	326.00	326	69	257
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	25	1	240.00	240	33	207
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	23	1	110.00	110	46	64
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	22	1	56.00	56	26	30
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	26	1	21.00	21	3	18
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG.......................................................................................................................................................	23	1	17.00	17	9	8
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	24	1	14.00	14	8	6
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTG..........................................................................................................................................................	21	1	5.00	5	1	4
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT......................................................................................................................................................	25	1	4.00	4	0	4
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT........................................................................................................................................................	22	1	3.00	3	3	0
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	26	1	2.00	2	0	2
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC........................................................................................................................................................	23	1	2.00	2	1	1
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT.......................................................................................................................................................	24	1	2.00	2	1	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.....................................................................................................................................................	25	1	2.00	2	0	2
....................................................................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..............................................................................................................	21	1	1.00	1	1	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.....................................................................................................................................................	26	1	1.00	1	0	1
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG........................................................................................................................................................	23	1	1.00	1	0	1
.........................................................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.........................................................................................................................................................	21	1	1.00	1	0	1
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	23	1	1.00	1	1	0
.......................................................................................................................................................................................................TTAAAGTAAATAGTCTGGATTGATGA......................................................................................................................................................	26	1	1.00	1	1	0
..........................................................................................................................................................................................................AAGTAAATAGTCTGGATTGATGTG.....................................................................................................................................................	24	1	1.00	1	1	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA.......................................................................................................................................................	24	1	1.00	1	1	0
...........................................................................................................................................................................................................AGTAAATAGTCTGGATTGAT........................................................................................................................................................	20	1	1.00	1	1	0
........................................................................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA....................................................................................................................................................	27	1	1.00	1	0	1

der_2

scaffold_4929:17456363-17456427 +

Known Ortholog

Canonical miRNA

intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.0	-27.9	-27.9