ID:

der_1393

 Coordinate:

scaffold_4929:26271027-26271177 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.0 -15.8 -15.7

Flybase annnotation

CDS [Dere\GG10934-cds]; exon [dere_GLEANR_10924:1]; intron [Dere\GG10934-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCGCAGGAATCACGACTACAAGGAGAGCGACAAAATTAATAAGTGTTCAGGTAACTAAAATCCAGTTATTTGTCTGAATGTAAGAGTAAATGCGATGATTTAATCGGACATCTAAATAAAAAGCATAAGGTTTAAAATAAAACAATAAATCTTTATATGTCAGAGAAGGAAATATACAAAAATACAGAAAATAAATAAATAGCGTTATTCACATTTACGACAAGTCTCTGTTGCCATTAAGTTGGAAGCGT
****************************************************........(((......((.(((((((((..((.(((((......))))).))..))))............(((((((((((...........)))))))...))))))))).)))))...****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M055
female body
 V108
head
 V107
male body		 M057
embryo
 V040
embryo
.................ACAAGGAGAGCGACAAAATT...................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1
...........ACGACTACAAGGAGAGCGACA........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
....................................................AACTAAAATCCAGTTATTTGTCTGA.............................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
...CAGGAATCACGACTACAAGGAGAGC............................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1
..........CACGACTAAAAGGAGAGCGAC............................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..................................ATTAATAAGTGTTCAGGT....................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0
........ATCACGACTACAAGTAGAGC............................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0
..GCAGGAATCACGACTACAAGGAGAGC............................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
................................................................................................................TGAATAAAAAGCATAAGGTTTAAAAT................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................CACATTTACGACAAGTCTCTGTTGCCAT.............. 28 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................CTTTATATGTCAGAGAAGGAAAT.............................................................................. 23 0 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................................................AAGTCTCTGTTGCCATTAAGTTGGA..... 25 0 1 1.00 1 0 0 0 1 0
...................................................................................................................................................AATCTTTATATGTCAGAGAAGGAAAT.............................................................................. 26 0 1 1.00 1 0 0 1 0 0
.......AATCACGACTACAAGGAGAGC............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
.........................................................................................................................................TAAAACAATAAATCTTTATATGTCAGAG...................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...............................AAAATTAATAAGTGTTCAGGTAA..................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
.......................................TAAGTGTTAAGGTAACTAAAATCC............................................................................................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0
...................................................................ATTTGTCTGAATGTAAGAGTAAAT................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
.........................................................................................ATGCGATGATTTAATCGGACAT............................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
......GGATCACGACTACAAGGAGAGC............................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0
........................................................................................................CGGACATCTAAATAAAAAGC............................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1
........ATCACGACTACAAGGAGAGC............................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
.........TCACGACTACAAGGAGAGCGAC............................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0
..........................................................................TGAATGTAAGAGTAAATGCGATGATT....................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................TCTTTATATGTCAGAGAAGGCAATA............................................................................. 25 1 1 1.00 1 1 0 0 0 0
..GCAGGAATCACGACTACAAGGAG.................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0
...................AAGGAGAGCGACAAAATT...................................................................................................................................................................................................................... 18 0 2 0.50 1 0 1 0 0 0
.....................................................................................................................................................................................................................................GTTGCCATTAAGTTGGGC.... 18 2 15 0.07 1 1 0 0 0 0
.................................AATTAACAGGTGTTCCGGT....................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

CGCGTCCTTAGTGCTGATGTTCCTCTCGCTGTTTTAATTATTCACAAGTCCATTGATTTTAGGTCAATAAACAGACTTACATTCTCATTTACGCTACTAAATTAGCCTGTAGATTTATTTTTCGTATTCCAAATTTTATTTTGTTATTTAGAAATATACAGTCTCTTCCTTTATATGTTTTTATGTCTTTTATTTATTTATCGCAATAAGTGTAAATGCTGTTCAGAGACAACGGTAATTCAACCTTCGCA
******************************************************************************........(((......((.(((((((((..((.(((((......))))).))..))))............(((((((((((...........)))))))...))))))))).)))))...**************************************************** 		Read size # Mismatch Hit Count Total Norm Total V040
embryo
 V108
head
.............................................................................................CTACTAAATTAGTCTGTGG........................................................................................................................................... 19 2 2 0.50 1 1 0
................................................................................................CTATATTAGCTTGTCGATTT....................................................................................................................................... 20 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4929:26270977-26271227 + der_1393 GCGCAGGAATCACGACTACA---AGGAGAGC-----GACAAA-ATTAATAAGTGTTCAG-----GTAACTAA---AATC---C--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCTGAATGTAAGAGTAAATGCGATGATTTAATCGGAC-------------ATCTAAATAAAAAGCATAAGGTTTAAAATAAAACAATAAATCTTTA-------------------------------------------------------TATGTCAGAGA---AGGAAATATACAAAAATACAGAAAATAAA--TAAATAG--------------------CGTTATTCACA---------------------------TTTACGACAAGTCTCTGTTGC----CATTAAGTTG-----GAAGC----------GT
droYak3 v2_chrUn_127:38175-38375 + GCGCAGGAATCAAGACTACA---AGGAGAGC-----GACAAA-GTTAATAAGTGTCCAG-----GTAACTAA---TTAT---G--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCTGAATGTAGAAGTAAATACGAAAATTTTATCTGACTTTTAAGTTCTTAATCT------GAAGCAAAAGGTCTAAAA-AAAATTATAAATAAATA-------------------------------------------------------TATATCAGACA---AGAAAATATACAAAGGCACATAAAATAAA----------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_365:6407-6615 - GCGCACGAATCAGGACTACA---AGGAAAGC-----GACAAA-ATTAATAAGTACCCAG-----GTAACTAA---AATC---T--------------------------------------------------------------------------------------------------------------------------------------------------AGATATTTGTCCGAATGTAGAAGTGAA--------TTTTATCTGACT--TGAGTTTTTAATATAATCAAAAAGCATA---TTTATAATCAAA--------------------------------------------------CATAAGGAAATAAAACTTTGTGTCAGAGG---AGGATATATACAAAG--ACATAAAATACAACAAATAAA--------------------CA---------------------------------------------------------------------------------------------
droSim2 node_15167:1477-1694 - GCGCACGAATCAGGACTACA---AGGAAAGC-----GACAAA-ATTAATAAGTACCCAG-----GTAACTAA---AATC---T--------------------------------------------------------------------------------------------------------------------------------------------------AGATATTTGTCCGAATGTAGAAGTGAA--------TTTTATCTGACT--TGAGTTTTTAATCTAATCAAAAAGCATA---TTTATAATCAAA--------------------------------------------------CATAAGGAAATAAAACTTTGTGTCAGAGGAGGAGGATATATACAAAG--ACATAAAATACAACAAATTAA--------------------CATTAT----------------------------------------------------T----C-------------------------------
dm3 chr2RHet:2903196-2903395 + GCGCACGAATCAGGACTACA---AGGAAAGC-----GACAAA-ATTAATAAGTGTCCAG-----GTAACTAA---AATC---T--------------------------------------------------------------------------------------------------------------------------------------------------AAATATTTGTCTGAATGTAGAAGTGAA--------TTTTATCTGACT--TGAGTTTTTAATCTAATCAAAAAGCATA---ATAATAAT-------------------------------------------------------------AAATAA---------TCAGAGGAGGAGGAAATATACAACGCCACATAAAATACAACAAATTAA--------------------CATTTT----------------------------------------------------T----C-------------------------------
droEug1 scf7180000409181:151328-151517 + ATTGG--TATAAAGATAAAA---ATGAAATT-----GTTATA-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTACATTTAAATGTATAAAAAAA--------------------------------------------------ATATTTAAAAACAAATTTTAAATGTTAATGCGTAAAGATAAAA----------GTA---------C--ATAAAAATGTAAATTTGAATATGAAT---GAAATTTTTAT-----------------------------------------------------AAAAATATACATTAAAAATG------------------------ATATAAAAA----TATTAATTTA-----TAA----------AAAT
droBia1 scf7180000302432:986051-986263 - GAAGCAAAAATA------AA---CGGAGAGC-----GGAAGC-A-----AAATGAACGC-----AAAACAAA---AATC---T-------------------------------------------------------------------------------------------------------------------------GTAGAAATTACAATATTGTTAT---AAATATTTGTCTCAATGAGAAAACAAACAAAA--------------------------------------------------------------------------------------------------ACAACCAACAAACAAAAGC-----------------------GAAACAAACCAACA--------------------------AA------------------------GAAAATATACATTAAAAAATTAATAAAAAATATTTGAAAAAAAACACTGTCGTTTTCTATGAAAT-------AAAGT----------TT
droTak1 scf7180000414003:4153-4385 + GCGCCGGAATCAAGACAATA---AGGAAGGC-----AACAAA-ATTAATACTTGTCAAG-----GTAATTCT---TTTTTATA--ATTATTGCTATATTTATATTTA-----------------------------------------------------------------------------------------------CTGTGGAAA-AGCCATATTATTATAA-ACTTCTTTCTTTTACTGTATAATTTATTGCCCTAATTTTTTTA-------------------A------GAATAGAATATTTTGAAG-TTGTTTGCAAG---------------------------------------------------------------------------------------------------------CAAGTTCC--------------------CTTTAT----------------------------------------------------T----CATAAAGTTACAAAGTCAGCTTTTAAATGAAA
droEle1 scf7180000486688:40820-41005 - GCGCCGGAATCAAGACAATA---GGGAGGAC-----GACAAA-ATTAATATATGTCAAG-----GTATTTAC---TA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTTATTCA---------------------------------------------------------------------CAAGTT-ATACTGATCGTTAATGTACCAT--CAAAAATAGAAACAAGTAACCAACAAGTAAAATT-----------------------AA-----AAAAAAAACACTACA--------------------------------------------AAAATCATTTATTGACAA----------------------------------------------------AAAAATTTATTAAAAAACA
droRho1 scf7180000770763:18382-18658 + CAGGAGCAACGACAACA------GC---GGC-----AACAAA-ATTCATAGG--ATCAG-----ATAAGTCCTAAATAT---CAGATAAGTCCTAAATATCAGATAAGTCCTAAATATCAAATAAAAATTAAAAAAAAAAATTAATTTCAAAAACTATATACAAATATTATAAAATATTAAAAGTGTATCATTTAAAAAAAACAACACAAG-AG-------CTTATA-------------------------AAAA--------TGTTGTCTG-CT--CAAACTATCGCCCTGATAAAAAGGCAGG---TT-GAAA-TTACA---------------------------------------------A-------------------------------------------------------------------------GCGCCAGTAAGCCGCTTGAAGATCTC----------------------------------------------------C----C-------------------------------
droFic1 scf7180000454123:14230-14302 + GCGTCGAAGTCAAAACGATAAAAGGGAAGAC-----GAAAAA-GCTAACATGTCTCAAG-----GTAACTGT---TA-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302146:22793-22833 + GCGTCGAAATCAAGACAGTA---GGGAGGAA-----GATAAA-ACCCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12911:263537-263589 + GCGCCAAAACCAAGATAAAA---AAGAGGAA-----AAAAAA-ATCAAAACAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCA----------------------------------------------------G----G-------------------------------
droBip1 scf7180000392195:27117-27173 - GCGTCAAAACCAAGATAAAA---AGGATGAT-----TTAAAA-ATCAAACAGATTCAGG-----GTAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_3:597635-597695 - GCGCCAAAATCTGGAAAGCA---GCGACGAT-----AACAACCGGTAACGCGTGCTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------AGGTA-------------------AA----------------------------------------------------T----A-------------------------------
droWil2 scf2_1100000004943:5976927-5976958 - GCGTCGTAC---AGATAACG---AAGACAGC-----AAAAAA-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12958:2571073-2571112 - GCGCCGTACTCAGGAATTTT---CTACAAATGATGATACAAA-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:4091098-4091144 - GCGCCGTACCCAGGAAGTTA---GTGATGAT-----ACCAAA-GTTAGTCAAGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:13589359-13589443 - GCGCCGCATCCACGATCCCT---CGACCAGT-----GATGAT-ACCAAAGTTAGTCCAGGAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------GGGTAAATAATTATTTCATTGAATTT----------------------------------------------------A----A-------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
GCGCAGGAATCACGACTACA---AGGAGAGC-----GACAAA-ATTAATAAGTGTTCAG-----GTAACTAA---AATC---C--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCTGAATGTAAGAGTAAATGCGATGATTTAATCGGAC-------------ATCTAAATAAAAAGCATAAGGTTTAAAATAAAACAATAAATCTTTA-------------------------------------------------------TATGTCAGAGA---AGGAAATATACAAAAATACAGAAAATAAA--TAAATAG--------------------CGTTATTCACA---------------------------TTTACGACAAGTCTCTGTTGC----CATTAAGTTG-----GAAGC----------GTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................ACA---AGGAGAGC-----GACAAA-ATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
...........ACGACTACA---AGGAGAGC-----GACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..................................................................AACTAA---AATC---C--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCTGA.........................................................................................................................................................................................................................................................................................................................2511.0010000010
...CAGGAATCACGACTACA---AGGAGAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
...........................................ATTAATAAGTGTTCAG-----GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
..GCAGGAATCACGACTACA---AGGAGAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA---------------------------TTTACGACAAGTCTCTGTTGC----CAT.............................2811.0011000000
.........................................................................................................................................................................................................................................................................................................................................CTTTA-------------------------------------------------------TATGTCAGAGA---AGGAAAT..................................................................................................................................................2311.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCTCTGTTGC----CATTAAGTTG-----GA...............2511.0010100000
......................................................................................................................................................................................................................................................................................................................................AATCTTTA-------------------------------------------------------TATGTCAGAGA---AGGAAAT..................................................................................................................................................2611.0010000100
.......AATCACGACTACA---AGGAGAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
............................................................................................................................................................................................................................................................................................................................TAAAACAATAAATCTTTA-------------------------------------------------------TATGTCAGAG.............................................................................................................................................................2811.0011000000
.......................................AAA-ATTAATAAGTGTTCAG-----GTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.........................................................................................................................................................................................................................................ATTTGTCTGAATGTAAGAGTAAAT...........................................................................................................................................................................................................................................................................................................2411.0011000000
...............................................................................................................................................................................................................................................................ATGCGATGATTTAATCGGAC-------------AT..........................................................................................................................................................................................................................................................................2211.0011000000
..............................................................................................................................................................................................................................................................................CGGAC-------------ATCTAAATAAAAAGC.............................................................................................................................................................................................................................................................2011.0010001000
........ATCACGACTACA---AGGAGAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.........TCACGACTACA---AGGAGAGC-----GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
................................................................................................................................................................................................................................................TGAATGTAAGAGTAAATGCGATGATT..................................................................................................................................................................................................................................................................................................2611.0011000000
..GCAGGAATCACGACTACA---AGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...................A---AGGAGAGC-----GACAAA-ATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGC----CATTAAGTTG-----GGC..............18150.0711000000
droYak3
GCGCAGGAATCAAGACTACA---AGGAGAGC-----GACAAA-GTTAATAAGTGTCCAG-----GTAACTAA---TTAT---G--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCTGAATGTAGAAGTAAATACGAAAATTTTATCTGACTTTTAAGTTCTTAATCT------GAAGCAAAAGGTCTAAAA-AAAATTATAAATAAATA-------------------------------------------------------TATATCAGACA---AGAAAATATACAAAGGCACATAAAATAAA----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................CTTAATCT------GAAGCAAAAGGT......................................................................................................................................................................................................................................................2016.00602000040000
......................................................................................................................................................................................................................................................................................TAAGTTCTTAATCT------GAAGCAAAAGGT......................................................................................................................................................................................................................................................2612.00200100010000
.............GACTACA---AGGAGAGC-----GACAAA-GTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000
..........................AGAGC-----GACAAA-GTTAATAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200100010000
....................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATATACAAAGGCACA.....................................................................................................................................1911.00101000000000
........ATCAAGACTACA---AGGAGAGC-----GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.............................................................................AT---G--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCTGAATGTAGA..................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....GGAATCAAGACTACA---AGGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................................................................................................................................................................................................................................................................................TTCTTAATCT------GAAGCAAAAGGT......................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................TAA---TTAT---G--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCT...........................................................................................................................................................................................................................................................................................................................2011.00101000000000
.........................................................................................................................................................................................................................................ATTTGTCTGAATGTAGAAGT...............................................................................................................................................................................................................................................................................................................2011.00100000010000
......................................................................AA---TTAT---G--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCT...........................................................................................................................................................................................................................................................................................................................1911.00100000010000
...........................................................................................................................................................................................................................................................................................TCTTAATCT------GAAGCAAAAGGT......................................................................................................................................................................................................................................................2111.00101000000000
.............................................................................AT---G--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCTGAAT.......................................................................................................................................................................................................................................................................................................................1911.00101000000000
.....GGAATCAAGACTACA---AGGAGAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...........AAGACTACA---AGGAGAGC-----GACAAA-GT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.........................................................................................................................................................................................................................................................................................GTTCTTAATCT------GAAGCAAAAGGT......................................................................................................................................................................................................................................................2311.00100100000000
.................................................................................................................................................................................................................................................................ACGAAAATTTTATCTGACTTT......................................................................................................................................................................................................................................................................................2111.00101000000000
.................ACA---AGGAGAGC-----GACAAA-GTTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACA---AGAAAATATACAAAGGCAC......................................................................................................................................2211.00101000000000
............................................................................................................................................................................................................................................................................................CTTAATCT------GAAGCAAAAGG.......................................................................................................................................................................................................................................................1911.00100100000000
.....GGAATCAAGACTACA---AGGAGAGC-----GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
............................................................................TAT---G--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCTGAATGTAGAAGTA..............................................................................................................................................................................................................................................................................................................2911.00100000010000
......................................................................AA---TTAT---G--------------------------------------------------------------------------------------------------------------------------------------------------AGTTATTTGTCTGAATGT.....................................................................................................................................................................................................................................................................................................................2511.00100000010000
...........................................GTTAATAAGTGTCCAG-----GTAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
................................................................................................................................................................................................................................................................TACGAAAATTTTATCTGACT........................................................................................................................................................................................................................................................................................2011.00100100000000
...........AAGACTACA---AGGAGAGC-----GACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.........................................................................................................................................................................................................................................................................................GTTCTTAATCT------GAAGCAAAAGGC......................................................................................................................................................................................................................................................2311.00100100000000
.............................................................................................................................................................................................................................................GTCTGAATGTAGAAGTAAAT...........................................................................................................................................................................................................................................................................................................2011.00100000010000
...........................................GTTAATAAGTGTCCAG-----GTAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.............GACTACA---AGGAGAGC-----GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
..............ACTACA---AGGAGAGC-----GACAAA-GTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
........ATCAAGACTACA---AGGAGAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..GCAGGAATCAAGACTACA---AGGAGAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...............CTACA---AGGAGAGC-----GA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001
droSec2
GCGCACGAATCAGGACTACA---AGGAAAGC-----GACAAA-ATTAATAAGTACCCAG-----GTAACTAA---AATC---T--------------------------------------------------------------------------------------------------------------------------------------------------AGATATTTGTCCGAATGTAGAAGTGAA--------TTTTATCTGACT--TGAGTTTTTAATATAATCAAAAAGCATA---TTTATAATCAAA--------------------------------------------------CATAAGGAAATAAAACTTTGTGTCAGAGG---AGGATATATACAAAG--ACATAAAATACAACAAATAAA--------------------CA---------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............GGACTACA---AGGAAAGC-----GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030210
.....CGAATCAGGACTACA---AGGAAAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0022000
........ATCAGGACTACA---AGGAAAGC-----GA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020110
....ACGAATCAGGACTACA---AGGAAAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................................................................................GAA--------TTTTATCTGACT--TGAGT.................................................................................................................................................................................................................................................................................2011.0010010
........ATCAGGACTACA---AGGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
......................................................................................................................................................................................................................................GATATTTGTCCGAATGTAGAAGTGAA--------T...................................................................................................................................................................................................................................................................................................2711.0010010
..............ACTACA---AGGAAAGC-----GACAAA-ATTAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
...............CTACA---AGGAAAGC-----GACAAA-ATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................AAAACTTTGTGTCAGAGG---AGGAT....................................................................................................................................................2311.0010100
.................................................................................................................................................................................................................................................................................................................A---TTTATAATCAAA--------------------------------------------------CATAAGGAAATAA............................................................................................................................................................................2611.0010100
.......................................................................................................................................................................................................................................................AGAAGTGAA--------TTTTATCTGACT--TGA...................................................................................................................................................................................................................................................................................2411.0011000
...............................................................................................................................................................................................................................................CCGAATGTAGAAGTGAA--------T...................................................................................................................................................................................................................................................................................................1811.0010010
........ATCAGGACTACA---AGGAAAGC-----GACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGG---AGGATATATACAAAG--A.......................................................................................................................................2411.0010100
........ATCAGGACTACA---AGGAAAGC-----GACAAA-ATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
............................................................................................................................................................................................................................................................................................................................................................................................ATAAAACTTTGTGTCAGAGG---AGGAT....................................................................................................................................................2511.0010010
.........................................................................................................................................................................................................................................ATTTGTCCGAATGTAGAAGTGAA--------TT..................................................................................................................................................................................................................................................................................................2511.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................AAATAAAACTTTGTGTCAGAGG---AGGAT....................................................................................................................................................2711.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTCAGAGG---AGGATATATAC..............................................................................................................................................2311.0010100
........................................................................................................................................................................................................................................TATTTGTCCGAATGTAGAAGTG..............................................................................................................................................................................................................................................................................................................2211.0011000
.............GACTACA---AGGAAAGC-----GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
.........TCAGGACTACA---AGGAAAGC-----GACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
...............CTACA---AGGAAAGC-----GACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......................................................................................................................................................................................................................................GATATTTGTCCGAATGTAGA..................................................................................................................................................................................................................................................................................................................2011.0010010
.......AATCAGGACTACA---AGGAAAGC-----GA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................AAAACTTTGTGTCAGAGG---AGGATA...................................................................................................................................................2411.0010010
...........AGGACTACA---AGGAAAGC-----GACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.....CGAATCAGGACTACA---AGGAAAGC-----GACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
........ATCAGGACTACA---AGGAAAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
..........CAGGACTACA---AGGAAAGC-----GACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
droSim2
GCGCACGAATCAGGACTACA---AGGAAAGC-----GACAAA-ATTAATAAGTACCCAG-----GTAACTAA---AATC---T--------------------------------------------------------------------------------------------------------------------------------------------------AGATATTTGTCCGAATGTAGAAGTGAA--------TTTTATCTGACT--TGAGTTTTTAATCTAATCAAAAAGCATA---TTTATAATCAAA--------------------------------------------------CATAAGGAAATAAAACTTTGTGTCAGAGGAGGAGGATATATACAAAG--ACATAAAATACAACAAATTAA--------------------CATTAT----------------------------------------------------T----C-------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....ACGAATCAGGACTACA---AGGAAAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.001003510000000100000
...........AGGACTACA---AGGAAAGC-----GACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200100010000000000
.....CGAATCAGGACTACA---AGGAAAGC-----GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
..............................................................................................................................................................................................................................................................AA--------TTTTATCTGACT--TGAGT.................................................................................................................................................................................................................................................................................1912.00200200000000000000
..GCACGAATCAGGACTACA---AGGAAAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000000000000000
...CACGAATCAGGACTACA---AGGAAAGC-----GACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.CGCACGAATCAGGACTACA---AGGAAAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...............................................................................................................................................................................................................................................................A--------TTTTATCTGACT--TGAGT.................................................................................................................................................................................................................................................................................1811.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................AAGGAAATAAAACTTTGTGT..................................................................................................................................................................2011.00100100000000000000
..........CAGGACTACA---AGGAAAGC-----GACAAA-AT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...CACGAATCAGGACTACA---AGGAAAGC-----GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
........................................................................................................................................................................................................................................TATTTGTCCGAATGTAGAAGTGAA--------TT..................................................................................................................................................................................................................................................................................................2611.00100000000100000000
..........................................................................................................................................................................................................................................................AGTGAA--------TTTTATCTGACT--TGAGT.................................................................................................................................................................................................................................................................................2311.00101000000000000000
........................................................................................................................................................................................................................................TATTTGTCCGAATGTAGAAGT...............................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.........TCAGGACTACA---AGGAAAGC-----GACAAA-AT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
..............................................................................................................................................................................................................................................TCCGAATGTAGAAGTGAA--------TTTT................................................................................................................................................................................................................................................................................................2211.00100000000000001000
................TACA---AGGAAAGC-----GACAAA-ATTAATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
........ATCAGGACTACA---AGGAAAGC-----GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
............................AGC-----GACAAA-ATTAATAAGTACCCAG-----GTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.......AATCAGGACTACA---AGGAAAGC-----GACAAA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.....CGAATCAGGACTACA---AGGAAAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
..................CA---AGGAAAGC-----GACAAA-ATTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.................................................................................................................................................................................................................................................GAATGTAGAAGTGAA--------TTT.................................................................................................................................................................................................................................................................................................1811.00100000000001000000
dm3
GCGCACGAATCAGGACTACA---AGGAAAGC-----GACAAA-ATTAATAAGTGTCCAG-----GTAACTAA---AATC---T--------------------------------------------------------------------------------------------------------------------------------------------------AAATATTTGTCTGAATGTAGAAGTGAA--------TTTTATCTGACT--TGAGTTTTTAATCTAATCAAAAAGCATA---ATAATAAT-------------------------------------------------------------AAATAA---------TCAGAGGAGGAGGAAATATACAACGCCACATAAAATACAACAAATTAA--------------------CATTTT----------------------------------------------------T----C-------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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No Reads
droTak1
GCGCCGGAATCAAGACAATA---AGGAAGGC-----AACAAA-ATTAATACTTGTCAAG-----GTAATTCT---TTTTTATA--ATTATTGCTATATTTATATTTA-----------------------------------------------------------------------------------------------CTGTGGAAA-AGCCATATTATTATAA-ACTTCTTTCTTTTACTGTATAATTTATTGCCCTAATTTTTTTA-------------------A------GAATAGAATATTTTGAAG-TTGTTTGCAAG---------------------------------------------------------------------------------------------------------CAAGTTCC--------------------CTTTAT----------------------------------------------------T----CATAAAGTTACAAAGTCAGCTTTTAAATGAAASizeHit CountTotal NormTotal
No Reads
droEle1
GCGCCGGAATCAAGACAATA---GGGAGGAC-----GACAAA-ATTAATATATGTCAAG-----GTATTTAC---TA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTTATTCA---------------------------------------------------------------------CAAGTT-ATACTGATCGTTAATGTACCAT--CAAAAATAGAAACAAGTAACCAACAAGTAAAATT-----------------------AA-----AAAAAAAACACTACA--------------------------------------------AAAATCATTTATTGACAA----------------------------------------------------AAAAATTTATTAAAAAACASizeHit CountTotal NormTotal
No Reads
droRho1
CAGGAGCAACGACAACA------GC---GGC-----AACAAA-ATTCATAGG--ATCAG-----ATAAGTCCTAAATAT---CAGATAAGTCCTAAATATCAGATAAGTCCTAAATATCAAATAAAAATTAAAAAAAAAAATTAATTTCAAAAACTATATACAAATATTATAAAATATTAAAAGTGTATCATTTAAAAAAAACAACACAAG-AG-------CTTATA-------------------------AAAA--------TGTTGTCTG-CT--CAAACTATCGCCCTGATAAAAAGGCAGG---TT-GAAA-TTACA---------------------------------------------A-------------------------------------------------------------------------GCGCCAGTAAGCCGCTTGAAGATCTC----------------------------------------------------C----C-------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGTCGAAGTCAAAACGATAAAAGGGAAGAC-----GAAAAA-GCTAACATGTCTCAAG-----GTAACTGT---TA-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCGTCGAAATCAAGACAGTA---GGGAGGAA-----GATAAA-ACCCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GCGCCAAAACCAAGATAAAA---AAGAGGAA-----AAAAAA-ATCAAAACAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCA----------------------------------------------------G----G-------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............ATAAAA---AAGAGGAA-----AAAAAA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331000100
droBip1
GCGTCAAAACCAAGATAAAA---AGGATGAT-----TTAAAA-ATCAAACAGATTCAGG-----GTAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droPer2
GCGCCAAAATCTGGAAAGCA---GCGACGAT-----AACAACCGGTAACGCGTGCTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------AGGTA-------------------AA----------------------------------------------------T----A-------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............AAGCA---GCGACGAT-----AACAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201001000
droWil2
GCGTCGTAC---AGATAACG---AAGACAGC-----AAAAAA-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....GTAC---AGATAACG---AAGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00300030
....CGTAC---AGATAACG---AAGACAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300210
....CGTAC---AGATAACG---AAGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201010
..GTCGTAC---AGATAACG---AAGACAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
..GTCGTAC---AGATAACG---AAGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
....CGTAC---AGATAACG---AAGACAGC-----AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..GTCGTAC---AGATAACG---AAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................ACG---AAGACAGC-----AAAAAA-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1811.00100010
................AACG---AAGACAGC-----AAAAAA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.......AC---AGATAACG---AAGACAGC-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
GCGCCGTACTCAGGAATTTT---CTACAAATGATGATACAAA-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........CTCAGGAATTTT---CTACAAATGATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCGCCGTACCCAGGAAGTTA---GTGATGAT-----ACCAAA-GTTAGTCAAGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..GCCGTACCCAGGAAGTTA---GTGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.......................GTGATGAT-----ACCAAA-GTTAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
......TACCCAGGAAGTTA---GTGATGAT-----AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.....GTACCCAGGAAGTTA---GTGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
GCGCCGCATCCACGATCCCT---CGACCAGT-----GATGAT-ACCAAAGTTAGTCCAGGAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------GGGTAAATAATTATTTCATTGAATTT----------------------------------------------------A----A-------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................AAGTTAGTCCAGGAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------GGGTG..............................................................................................................2411.00101

Generated: 05/17/2015 at 11:59 PM