ID:

der_1360

 Coordinate:

scaffold_4929:18757039-18757189 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.5 -22.3 -21.6

Flybase annnotation

exon [dere_GLEANR_10590:4]; CDS [Dere\GG10689-cds]; intron [Dere\GG10689-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACATCGTTCGACATTGATTTTTTTGTGTGGATATTTCGGCCAGCGGAGCGCGGTGAAAGTGGTGCAGTAGCATTAAAATATTTTGTGAGCGGCTCGCTTATTAGTCACACTTGCATAATTGCGAGGAGCCGCTAAAGCACCACGACGATCCCCTTGCCGAAGTTCACTTTGGATGCTATTGGCCCTAGTGGAGCTCATTAGAATGTTAAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTG
***************************************************************************........((..((((((((..............(((((......))))))))))))).......))************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V107
male body		 V108
head
 M055
female body
 V040
embryo
 M057
embryo
.........................................AGCGGAGCGCGGTGAAAGTGGT............................................................................................................................................................................................ 22 0 1 5.00 5 4 1 0 0 0
.........................................AGCGGAGCGCGGTGAAAGT............................................................................................................................................................................................... 19 0 1 3.00 3 2 1 0 0 0
..................................................................................................................ATAATTGCGAGGAGCCGCTAAAGCACCA............................................................................................................. 28 0 1 3.00 3 1 2 0 0 0
...........................................................................AAATATTTTGTGAGCGGCT............................................................................................................................................................. 19 0 1 2.00 2 0 1 1 0 0
..................................................................................................................ATAATTGCGAGGAGCCGCTAAAGC................................................................................................................. 24 0 1 2.00 2 1 1 0 0 0
...................TTTTTGTGTGGATATTTCGGCC.................................................................................................................................................................................................................. 22 0 1 2.00 2 1 1 0 0 0
............ATTGATTTTTTTGTGTGGAT........................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0
.......................................................................ATTAAAATATTTTGTGAGCGGCT............................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0
..................................................................................................................ATAATTGCGAGGAGCCGCTAAAGCAC............................................................................................................... 26 0 1 2.00 2 1 1 0 0 0
...........................................................................................................................................................................................GTGGAGCTCATTAGAATGTTAAAGCGT..................................... 27 0 1 2.00 2 2 0 0 0 0
..........................................................................AAAATATTTTGTGAGCGGCT............................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0
.......................................................................................................................................................................................................AGAATGTTAAAGCGTCGCGCCAGCAAGC........................ 28 0 1 2.00 2 1 0 1 0 0
............................................GGAGCGCGGTGAAAGTGGT............................................................................................................................................................................................ 19 0 1 2.00 2 1 0 0 1 0
................GATTTTTTTTGTGGATATTTCGGCCA................................................................................................................................................................................................................. 26 3 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................................GCTATTGGCCCTAGTGGAGCT........................................................ 21 0 1 1.00 1 1 0 0 0 0
..............................ATATTTCGGCCAGCGGAGCGCGGT..................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0
...........CATTGATTTTTTTGTGTGGAT........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
..............TGATTTTTTTGTGTGGATATTTC...................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................GTTCACTTTGGATGCTATTGGCC................................................................... 23 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................GCCAGCAAGCGTTTCGTACTT............. 21 0 1 1.00 1 1 0 0 0 0
................................................................................................................GCATAATTGCGAGGAGCCGCTAAAGC................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
......................................................................................GAGCGGCTCGCTTATTAGTCACACT............................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................GCCCTAGTGGAGCTCATT.................................................... 18 0 1 1.00 1 0 0 1 0 0
............................................................................................................................................................................................................GTTAAAGCGTCGCGCCAGCATGC........................ 23 1 1 1.00 1 0 0 0 1 0
...............GATTTTTTTGTGTGGATAT......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
.................................................................................................................CATAATTGCGAGGAGCCGCTAAAG.................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
............................................................................................................ACTTGCATAATTGCGAGGAGC.......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.....................TTTGTGTGGATATTTCGGCCAGC............................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
................................................CGCGGTGAAAGTGGTGCAGTAGC.................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................GTTTCGTACTTGTTGAGTCC.... 20 0 1 1.00 1 0 0 1 0 0
....................................................................................................TTAGTCACACTTGCATAATTGCGA............................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................GGTCACTTTGGATGCTATTGGCCCT................................................................. 25 1 1 1.00 1 1 0 0 0 0
...........................................................................AAATATTTTGTGAGCGGCTC............................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................GTTCACTTTGGATGCTATTGGCCCT................................................................. 25 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................................................................................................................CGTACTTGTTGAGTCCGG.. 18 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................CGCTAAAGCACCACGACGATCCCCTTGC.............................................................................................. 28 0 1 1.00 1 1 0 0 0 0
..............................................................................................................TTGCATAATTGCGAGGAGCCGCTAAAGC................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
.................................................................................................................CATAATTGCGAGGAGCCGCTAAAGC................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
....................................................................AGCATTAAAATATTTTGTGAGCGGC.............................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
........................................CAGCGGAGCGCGGTGAAAGTGGTG........................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
...............GATTTTTTTGTGTGGATATTTCGGCC.................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
.............................................................................................TCGCTTATTAGTCACACTTGC......................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
.........................TGTGGATATTTCGGACAGC............................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0
.........................................AGCGGAGCGCGGTGAAAGTG.............................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
............................................................................AATATTTTGTGAGCGGCT............................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................TGGATGCTATTGGCCCTAGTGGAGCT........................................................ 26 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................GCTATTGGCCCTAGTGGAGCTCATT.................................................... 25 0 1 1.00 1 0 1 0 0 0
.............................GATATTTCGGCCAGCGGAG........................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
..............................ATATTTCGGCCAGCGGAGC.......................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................ATGTTAAAGCGTCGCGCCA.............................. 19 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................................................................AGCGTCGCGCCAGCAAGCGTTTCG.................. 24 0 1 1.00 1 0 0 0 1 0
..........................................................................AAAATATTTTGTGAGCGGCTCGCTTATT..................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
........................GTGTGGATATTTCGGCCAGCGGAGCGC........................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
.........................................AGCGGAGCGCGGTGAAAGTGGTGC.......................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
........CGACATTGATTTTTTTGTGT............................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
..........................................GCGGAGCGCGGTGAAAGT............................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0
...................................CCGGCCAGCGGAGCGCGGTGAAAGTGG............................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0
..................................................................................................................ATAATTGCGAGGAGCCGCTAAAGCA................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................GTGGAGCTCATTAGAATGTTA........................................... 21 0 1 1.00 1 0 1 0 0 0
...............................................................................ATTTTGTGAGCGGCTCGCTTA....................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................GGAGCTCATTAGAATGTTAAAG........................................ 22 0 1 1.00 1 0 0 1 0 0
.........................................................................TAAAATATTTTGTGAGCGGC.............................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
.................................................................................................................CATAATTGCGAGGAGCCGCTAAAGCACC.............................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
.........................................AGCGGAGCTCGGTGAAAGTGGT............................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.................................................................AGTAGCATTAAAATATTTTGTGAGCGCC.............................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0
......................TTGTGTGGATATTTCGGCC.................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................GTGGAGCTCATTAGAATGTTAAAGC....................................... 25 0 1 1.00 1 0 1 0 0 0
................ATTTTTTTGTGTGGATATTTCGGCC.................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1
................ATTTTTTTGTGTGGATATTTC...................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.........................................................................TAAAATATTTTGTGAGCGGCT............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................AGAATGTTAAAGCGTCGCGCCAGC............................ 24 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................CATTAGAATGTTAAAGCGTC.................................... 20 0 1 1.00 1 0 1 0 0 0
..................................................................................................................ATAATTGCGAGGAGCCGCTAAAG.................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0
.............................GATATTTCGGCCATCGGAGCGC........................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................AATGTTAAAGCGTCGCGCCAGCAAGC........................ 26 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................GTTTCGTACTTGTTGAGTCCGGTG 24 0 1 1.00 1 1 0 0 0 0
....................................................................................................................AATTGCGAGGAGCCGCTAAAGCACCA............................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................GTTAAAGCGTCGCGCCAGCA........................... 20 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................GACGATCCCCTTGCCGAAGT........................................................................................ 20 0 1 1.00 1 0 1 0 0 0
.................................................................................................................AATAATTGCGAGGAGCTGCTAAAGC................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................CATTAGAATGTTAAAGCGTCGCGCCA.............................. 26 0 1 1.00 1 0 1 0 0 0
.......................................................................ATTAAAATATTTTGTGAGCGGC.............................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
..................................................................................................................ATAATTGCGAGGAGCCGCTAAAGCACC.............................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
.............................GATATTTCGGCCAGCGGAGCGCGGT..................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
......................TTGTGTGGATATTTCGGCCA................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................GGATGCTATTGGCCCTAGTGGA........................................................... 22 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................CACTTTGGATGCTATTGGCCCTAGT.............................................................. 25 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................ACTTTGGATGCTATTGGCCCTAGTGGA........................................................... 27 0 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................................................................TAAAGCGTCGCGCCAGCAAGCGTTTC................... 26 0 1 1.00 1 1 0 0 0 0
..................................................................................................................ATAATTGCGAGGAGCCGC....................................................................................................................... 18 0 2 0.50 1 0 1 0 0 0
...................................................................................................................................CTAAAACATCATGACGATCCC................................................................................................... 21 3 5 0.20 1 0 0 0 1 0
................................................................................CTTTGTGACCGGGTCGCTT........................................................................................................................................................ 19 3 17 0.06 1 0 0 1 0 0
....................................................................................................................................TAAAGCACCCCGACGAGG..................................................................................................... 18 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TGTAGCAAGCTGTAACTAAAAAAACACACCTATAAAGCCGGTCGCCTCGCGCCACTTTCACCACGTCATCGTAATTTTATAAAACACTCGCCGAGCGAATAATCAGTGTGAACGTATTAACGCTCCTCGGCGATTTCGTGGTGCTGCTAGGGGAACGGCTTCAAGTGAAACCTACGATAACCGGGATCACCTCGAGTAATCTTACAATTTCGCAGCGCGGTCGTTCGCAAAGCATGAACAACTCAGGCCAC
*************************************************************************************************************........((..((((((((..............(((((......))))))))))))).......))*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V060
head
 V040
embryo
................................................................................................GAATAATCAGTGTGCAGGT........................................................................................................................................ 19 2 2 0.50 1 1 0
...................................................CTACTTACACCATGTCATC..................................................................................................................................................................................... 19 3 13 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4929:18756989-18757239 + der_1360 AC-AT--CGTTCGACATTGATTTT-TT----TGT-------GTGGA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TAGCATT-----AAAATATTTTG-TGAGCGG-------------------------------CTCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------CCACGACGATCCCCT-------------------------------------------------------------------TGC----CGAAGTTCAC------------TTTGGATGCTATTGGCCCTAGTGGAGCTCATTAGAATGTTAAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTG
droYak3 2L:16527515-16527765 - dya_344 AC-AT--CGTTCGACATTGATTTT-TG----TGT-------GTGGA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCATT-----AAAATATTTTG-TGAGCTG-------------------------------CTTGCTTACTAGTCACACTTGCATAATT-ACGAGGAG----------CC--GCT------A-C---A-----------------GCA--------------CCACGACGATCCCCT-------------------------------------------------------------------TGC----TACAGTTCCC------------TTTGGATGCTCTTAGCCCTCGTGGAGCTCATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTG
droSec2 scaffold_1:1508452-1508702 - AC-AT--CGTTCGACATTGATTTT-TG----TGT-------GTGGA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----CGGCATT-----AAAATATTTTG-TGAGCGG-------------------------------CCCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------CCACGACGATCCCCC-------------------------------------------------------------------TGC----CAGAGTTCAC------------TTTGGATGCTATTGGCCCTCGTGGAGCTCATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTG
droSim2 2r:4694638-4694888 - dsi_14439 AC-AT--CGTTCGACATTGATTTT-TG----TGT-------GTGGA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----CGGCATT-----AAAATATTTTG-TGAGCGG-------------------------------CCCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------CCACGACGATCCCCC-------------------------------------------------------------------TGC----CAGAGTTCAC------------TTTGGATGCTATTGGCCCTCGTGGAGCTCATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTG
dm3 chr2R:3871198-3871449 - ACCAT--CGTTCGACATTGATTTT-TG----TGT-------GTGAA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCATT-----AAAATATTTTG-TGAGCGG-------------------------------CTCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------ACA--------------CCACGACGATCCCCC-------------------------------------------------------------------TGC----CAGAGTTCAC------------TTTGGATGCTATTGGCCCTCGTGGAGCTCATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTG
droEug1 scf7180000409474:2707973-2708231 - AC-AT--CGTTCGACATTGATTTT-TG----TGT-------------------------------T-TTTTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCAAT-----AAAATATTTTGTTGTGCTG-------------------------------TTCGTTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CCCCACA------A-A---A-----------------AAA--------------CGACGACGATCCCCT-------------------------------------------------------------------TAT----CAGAGTTCACTTTTTCCCC---TTTGGATGTTATTAGCCCTCGTGGAGCTAATTAGAATGTTAAAACGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCTGGTG
droBia1 scf7180000302291:1712838-1713074 - AC-AT--CGTTCGACATTGATTTT-TG----TGT---------------------------------TTTTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCACT-----AAAACATTTT------------------------------------------CGTTTGTTAGTCACACTTGCATAATT-GCGAGGAG----------CCCCGAT------A-A---A------------------AA--------------CCACGACGATCCCCC-------------------------------------------------------------------TGC----CAGAGTTCAC------------TTTGGATGCTATTGGCCCTCGTGGAGCTAATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTGGTTGAGTCCGGGG
droTak1 scf7180000415088:261607-261851 + AC-AT--CGTTCGACATTGATTTT-TG----TGT-------GCGTT-------------------T-TTTTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCACT-----AAAATATTTTGTTGTGCGG-------------------------------CTCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--CCCAAT---CAGGCAA----------A-------G----------------------------------------------------------------------------------------------------AAAACAGAGTTCAC------------TTTGGATGCTATTGGCCCTCGTGGAGCTAATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAATCCGGTG
droEle1 scf7180000491258:166963-167233 + CC-AT--CGTTCGACATTGATTTT-TGTATTTGTTGTATTTG--TATTG-TAT---------TTTT-TTTTTCGG-------------------CCAGCG------GAGCACGGTGAAAGTGGTGCAGCAGTGTGGCATT-----AAAATATTGTG-TGTGCGC-------------------------------TCCGCTTATTAGTCACACTTGCATAATT-GCGAGGGG----TATAAGCC--CAT------A-G---A------------------AA-----GATATATTATC----AGATCCCC-------------------------------------------------------------------------------------------------TTTGGATGCTATTGGCCCTCGTGGAGCTAATCAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGGG
droRho1 scf7180000774573:118221-118470 - AC-AT--CGTTCGACATTGATTTT-TC----GGT-------------------------------T-TTTTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCACT-----AAAATATTGTG-TGTGCGG-------------------------------TTCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--CC--AT---A-A---A------------------------------------AAGACGATCCCCT-------------------------------------------------------------------TCC----CAGAGCTCAA-TTT-ACCC---CTTGGATGCTATTGGCCCTCGTGGAAATAATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGGG
droFic1 scf7180000453215:339887-340130 + AC-AT--CGTTCGACATTGATTTT-TG----TGT-------GTGTT-------------------T-TTTTTCGG-------------------CCGTCG------GAGCGCGGTGAAAGTGGTGCAGCA--GTGTCAGC-----AAAAAAT-------------------------------------------------TATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--CCA------A-A---A-----------------A------------------ACGGCGATCCCC--------------------------------------------------------------------TGC----CAGAGCTCACCTTT-GCCCCCTTTTGGATGCTATTGGCCCTCGTGGAGCTTATAAGAATGCTGAAGCGTCGCGCCAGCAAGCGATTCGTACTTGTTGAGTCCGGTG
droKik1 scf7180000302471:493612-493929 - AT-AT--CGTTCGACATTGATTTT-TG----TAT-------T-----------------------T-TTTTTCGG-------------------CCAGCGAACGCCGAGCGCGGTGAAAGTGGTGCAGT---GTGGCATT-----AAAATATTGTG-AGTGCGG-------------------------CGG--CCCCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC-----------------------------------------------------------GATCCCCCAACGCCACAGATACGGATACATATACAGATACAGATAAAGATACGATCCATTACGATCCGATATCATTCC----CCGCCTTGAC-TTT-GCCC---CTTGGATGCTATTGGCCCTCGTGGAGCTATTTAGAATGTTAAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTG
droAna3 scaffold_13266:16195011-16195312 - AC-AT--CGTTCGACATTGATTTT-TGTTGTTGTTGT---TGTGGTTTGT------------TGTTGGTTTTGG------------------------------------GCGGTGAAAGTGGTGCAGTGTTGTGGCATT-----AAAATATTTTA-TGTGCGG------------------------------------TTATTAGTCACACTTGCATAATT-GCGAGGAG----GAGAAGCC--ACCCATATCA------GTCCCAACCCCACCCCAGCT--------------CCACGAAGATCC----------------------------------------------------GTCCCGATCCGAT-----TCCAAT---AAGTTGAC-TTT-GCAC---CTTGGATGCTATTGGCCCTCGTGGAGCTAATTAGAATGTTAAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTG
droBip1 scf7180000396567:675306-675618 - AC-AT--CGTTCGACATTGATTTT-TT----TGTTGTGGTTG-------TTGT---------TGTT-GTTTTCGG------------------------------------CGGTGAAAGTGGTGCAGTGTTGTGGCTTTGAAAAAAAATATTGTC-TGTGCGG-------------------------------TTGAGTTATTAGTCACACTTGCATAATT-GCGAAGAG----------CC--ACCCATATCA-T---AGCCCCACCCCTATCCCAGCCCCAGAGATAT----CCGCGAAGATCC----------------------------------------------------GTCCCGATCCGAT-----TCCAAAAC--CGTTGAC-TTT-GCAC---CTTGGATGCTATTGGCCCTCGTGGAGCTAATTAGAATGTTAAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTG
dp5 3:5501613-5501908 - dps_1035 AT-ATTCCGTTCGACATTGATTTTCTGC---CGT-------GTGGCTCGTCATCGTCATATC-----GTTGTCGGTGGGGAGAAAGTGTTGCTTGCAGCA------AAAAGTGGTGTGTGTGGTG--------TGGCATA-----AACA---------------GTGTTTTTTTTGTTTGTTCTCCGTTCGGTTTTTCGTTTGTTAGTCAGAATTGCATAATTCTCGTGGGG----------TT--GCCCGT---CCG--------------------------------------AGC---C------------------------------------------------------------------------------------GAGTTCCC-CCT-GACC---CCTGAATGCTATTGGCCCTCGTTGAGCTTGCCAGCATGTTGAAGCGTCGCACCAGTAAGCGTTTTGTACTTGTTGAGTCTGGCG
droPer2 scaffold_2:5700909-5701202 - AT-ATTCCGTTCGACATTGATTTC-TGC---CGT-------GTGGCTCGTCATCGTCATATC-----GTTGTCGGTGGGGAGAAAGTGTTGCTTGCAGCA------AAAAGTGGTGTGTGTGGTG--------TGGCATA-----AACA---------------GTGTTT-TTTTGTTTGTTCTCCGTTCGGTTTTTCGGTTGTTAGTCAGAATTGCATAATTCTCGTGGGG----------TT--GCCCGT---CCG--------------------------------------AGC---C------------------------------------------------------------------------------------GAGTTCCC-CCT-GACC---CCTGAATGCTATTGGCCCTCGTTGAGCTAGCCAGCATGTTGAAGCGTCGCACCAGTAAGCGTTTTGTACTTGTTGAGTCTGGCG
droWil2 scf2_1100000004513:1767768-1767929 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAGTCAGACTTGCATAAGTCTAGTGGGAGGGGCAAA--CC--CCG-AC---A-A---A------------------AA-------------------GCTATATACT--------------------------------------------------------------------TCAAAATATTGCATAT------------TGTGAATGCTTTTGGCTCTCATTGCCTTTGTCAAAATGCTAAAGCGTCGGGCTAGCAAGCGTTTTGTACTTGTTGAATCTGGCG
droVir3 scaffold_12875:14765685-14765767 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAATGATCTTGGCCCTAATTGCGTATGCCAAAATGTTGAAGCGTCGCGCCAGCAAACGTTTTGTGCTCGTGGAAACCGGTG
droMoj3 scaffold_6496:10238087-10238169 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAATGATCTTGGCCCTAATTGCGTTCGCCAAAATGTTAAAGCGTCGCGCCAGCAAACGGTTTGTGCTTGTGGAGACAGGTG
droGri2 scaffold_15245:14775161-14775243 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAATGCTCTTGGCCATAATTGCATGCGTTAAAATGTTAAAGCGTCGCGCCAGCAAACGTTTTGTTCTCCTTGAAACCGGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AC-AT--CGTTCGACATTGATTTT-TT----TGT-------GTGGA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TAGCATT-----AAAATATTTTG-TGAGCGG-------------------------------CTCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------CCACGACGATCCCCT-------------------------------------------------------------------TGC----CGAAGTTCAC------------TTTGGATGCTATTGGCCCTAGTGGAGCTCATTAGAATGTTAAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................AGCG------GAGCGCGGTGAAAGTGGT...............................................................................................................................................................................................................................................................................................................................................................................2215.0050000410
................................................................................................AGCG------GAGCGCGGTGAAAGT..................................................................................................................................................................................................................................................................................................................................................................................1913.0030000210
.........................................................................................................................................................................................................................ATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------CCA................................................................................................................................................................................................2813.0030000120
..................................................................................................................................................AAATATTTTG-TGAGCGG-------------------------------CT......................................................................................................................................................................................................................................................................................................1912.0021000010
.........................................................................................................................................................................................................................ATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GC..................................................................................................................................................................................................................2412.0020000110
......................TT-TT----TGT-------GTGGA---------------------TATTTCGG-------------------CC...........................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000110
...............ATTGATTTT-TT----TGT-------GTGGA---------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000020
.........................................................................................................................................ATT-----AAAATATTTTG-TGAGCGG-------------------------------CT......................................................................................................................................................................................................................................................................................................2312.0020000200
.........................................................................................................................................................................................................................ATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------C..................................................................................................................................................................................................2612.0020000110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCTCATTAGAATGTTAAAGCGT.....................................2712.0020000200
.................................................................................................................................................AAAATATTTTG-TGAGCGG-------------------------------CT......................................................................................................................................................................................................................................................................................................2012.0020000200
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGTTAAAGCGTCGCGCCAGCAAGC........................2812.0021000100
...................................................................................................G------GAGCGCGGTGAAAGTGGT...............................................................................................................................................................................................................................................................................................................................................................................1912.0020001100
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCTATTGGCCCTAGTGGAGCT........................................................2111.0010000100
.............................................A---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGT........................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..............CATTGATTTT-TT----TGT-------GTGGA---------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.................TGATTTT-TT----TGT-------GTGGA---------------------TATTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTCAC------------TTTGGATGCTATTGGCC...................................................................2311.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCAAGCGTTTCGTACTT.............2111.0010000100
.......................................................................................................................................................................................................................GCATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GC..................................................................................................................................................................................................................2611.0010000100
..............................................................................................................................................................GAGCGG-------------------------------CTCGCTTATTAGTCACACT.....................................................................................................................................................................................................................................................................................2511.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTAGTGGAGCTCATT....................................................1811.0011000000
..................GATTTT-TT----TGT-------GTGGA---------------------TAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
........................................................................................................................................................................................................................CATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------G...................................................................................................................................................................................................................2411.0010000100
...................................................................................................................................................................................................................ACTTGCATAATT-GCGAGGAG----------C........................................................................................................................................................................................................................................................2111.0010000100
.........................TT----TGT-------GTGGA---------------------TATTTCGG-------------------CCAGC........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.............................................................................................................CGCGGTGAAAGTGGTGCAG-----TAGC..................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTACTTGTTGAGTCC....2011.0011000000
...........................................................................................................................................................................................................TTAGTCACACTTGCATAATT-GCGA.......................................................................................................................................................................................................................................................................2411.0010000100
..................................................................................................................................................AAATATTTTG-TGAGCGG-------------------------------CTC.....................................................................................................................................................................................................................................................................................................2011.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTCAC------------TTTGGATGCTATTGGCCCT.................................................................2511.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACTTGTTGAGTCCGG..1811.0010000100
...................................................................................................................................................................................................................................................C--GCT------A-A---A-----------------GCA--------------CCACGACGATCCCCT-------------------------------------------------------------------TGC----..........................................................................................................2811.0010000100
.....................................................................................................................................................................................................................TTGCATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GC..................................................................................................................................................................................................................2811.0010000100
........................................................................................................................................................................................................................CATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GC..................................................................................................................................................................................................................2511.0010000010
......................................................................................................................................AGCATT-----AAAATATTTTG-TGAGCGG-------------------------------C.......................................................................................................................................................................................................................................................................................................2511.0010000100
...............................................................................................CAGCG------GAGCGCGGTGAAAGTGGTG..............................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................GATTTT-TT----TGT-------GTGGA---------------------TATTTCGG-------------------CC...........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
....................................................................................................................................................................................................TCGCTTATTAGTCACACTTGC..................................................................................................................................................................................................................................................................................2111.0011000000
................................................................................................AGCG------GAGCGCGGTGAAAGTG.................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...................................................................................................................................................AATATTTTG-TGAGCGG-------------------------------CT......................................................................................................................................................................................................................................................................................................1811.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGCTATTGGCCCTAGTGGAGCT........................................................2611.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCTATTGGCCCTAGTGGAGCTCATT....................................................2511.0010000010
............................................GA---------------------TATTTCGG-------------------CCAGCG------GAG..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.............................................A---------------------TATTTCGG-------------------CCAGCG------GAGC.............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAAAGCGTCGCGCCA..............................1911.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCGCGCCAGCAAGCGTTTCG..................2411.0010001000
.................................................................................................................................................AAAATATTTTG-TGAGCGG-------------------------------CTCGCTTATT..............................................................................................................................................................................................................................................................................................2811.0010000100
................................GT-------GTGGA---------------------TATTTCGG-------------------CCAGCG------GAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
................................................................................................AGCG------GAGCGCGGTGAAAGTGGTGC.............................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
...........CGACATTGATTTT-TT----TGT-------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.................................................................................................GCG------GAGCGCGGTGAAAGT..................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
.........................................................................................................................................................................................................................ATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------...................................................................................................................................................................................................2511.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCTCATTAGAATGTTA...........................................2111.0010000010
......................................................................................................................................................ATTTTG-TGAGCGG-------------------------------CTCGCTTA................................................................................................................................................................................................................................................................................................2111.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTCATTAGAATGTTAAAG........................................2211.0011000000
...........................................................................................................................................T-----AAAATATTTTG-TGAGCGG-------------------------------C.......................................................................................................................................................................................................................................................................................................2011.0010000010
........................................................................................................................................................................................................................CATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------CC.................................................................................................................................................................................................2811.0010000100
..........................T----TGT-------GTGGA---------------------TATTTCGG-------------------CC...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCTCATTAGAATGTTAAAGC.......................................2511.0010000010
...................ATTTT-TT----TGT-------GTGGA---------------------TATTTCGG-------------------CC...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
...................ATTTT-TT----TGT-------GTGGA---------------------TATTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...........................................................................................................................................T-----AAAATATTTTG-TGAGCGG-------------------------------CT......................................................................................................................................................................................................................................................................................................2111.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGTTAAAGCGTCGCGCCAGC............................2411.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAGAATGTTAAAGCGTC....................................2011.0010000010
.........................................................................................................................................................................................................................ATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------G...................................................................................................................................................................................................................2311.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTAAAGCGTCGCGCCAGCAAGC........................2611.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTACTTGTTGAGTCCGGTG2411.0010000100
...........................................................................................................................................................................................................................AATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------CCA................................................................................................................................................................................................2611.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAGCGTCGCGCCAGCA...........................2011.0010000100
............................................................................................................................................................................................................................................................................................................GACGATCCCCT-------------------------------------------------------------------TGC----CGAAGT....................................................................................................2011.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAGAATGTTAAAGCGTCGCGCCA..............................2611.0010000010
.........................................................................................................................................ATT-----AAAATATTTTG-TGAGCGG-------------------------------C.......................................................................................................................................................................................................................................................................................................2211.0010000100
.........................................................................................................................................................................................................................ATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------CC.................................................................................................................................................................................................2711.0010000100
............................................GA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGT........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
..........................T----TGT-------GTGGA---------------------TATTTCGG-------------------CCA..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCTATTGGCCCTAGTGGA...........................................................2211.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................CAC------------TTTGGATGCTATTGGCCCTAGT..............................................................2511.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................AC------------TTTGGATGCTATTGGCCCTAGTGGA...........................................................2711.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCGTCGCGCCAGCAAGCGTTTC...................2611.0010000100
.........................................................................................................................................................................................................................ATAATT-GCGAGGAG----------CC--GC...................................................................................................................................................................................................................................................1820.5010000010
droYak3
AC-AT--CGTTCGACATTGATTTT-TG----TGT-------GTGGA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCATT-----AAAATATTTTG-TGAGCTG-------------------------------CTTGCTTACTAGTCACACTTGCATAATT-ACGAGGAG----------CC--GCT------A-C---A-----------------GCA--------------CCACGACGATCCCCT-------------------------------------------------------------------TGC----TACAGTTCCC------------TTTGGATGCTCTTAGCCCTCGTGGAGCTCATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCGTACTTGTTGAGTCCGGT.2612.00200000020000
.................................................................................................................................................................................................................................................................................................................................................................................................TACAGTTCCC------------TTTGGATGCTCTTAGCCCT.................................................................2911.00110000000000
......................................................................................................................................................................................................................TGCATAATT-ACGAGGAG----------CC--.....................................................................................................................................................................................................................................................1911.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTGGAGCTCATTAGAAT...............................................2011.00100000010000
..............................................................................................................................................................................................................................T-ACGAGGAG----------CC--GCT------A-C---A-----------------GCA--------------CCAC...............................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................ATT-----AAAATATTTTG-TGAGCTG-------------------------------........................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGTGGAGCTCATTAGAATGTTGAAGC.......................................2911.00100000010000
.................................................................................................GCG------GAGCGCGGTGAAAGTGGT...............................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............CATTGATTTT-TG----TGT-------GTGGA---------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAGAATGTTGAAGCGTCGC..................................2211.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATGCTCTTAGCCCTCGTGGAGCT........................................................2811.00100000010000
...........................................GGA---------------------TATTTCGG-------------------CCAGCG------GAGC.............................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................................................................................................................GCTG-------------------------------CTTGCTTACTAGTCACA.......................................................................................................................................................................................................................................................................................2111.00100000010000
.................................................................................................................................................................................................................................................................C---A-----------------GCA--------------CCACGACGATCCCCT-------------------------------------------------------------------T................................................................................................................2111.00101000000000
...........CGACATTGATTTT-TG----TGT-------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...........CGACATTGATTTT-TG----TGT-------GTGGA---------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTCCC------------TTTGGATGCTCTTAGCCCTCGT..............................................................2711.00100000010000
..............CATTGATTTT-TG----TGT-------GTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
....................TTTT-TG----TGT-------GTGGA---------------------TATTTCGG-------------------C............................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCGTCGCGCCAGCAAGCGTTT....................2511.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................CCC------------TTTGGATGCTCTTAGCCCTCGTGGA...........................................................2811.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGTTGAAGCGTCGCGCCAGC............................2411.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTTAGCCCTCGTGGAGCT........................................................2311.00100000010000
.C-AT--CGTTCGACATTGATTTT-TG----TGT-------GTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
...................................................................................................................................................................................................................ACTTGCATAATT-ACGAGGAG----------C........................................................................................................................................................................................................................................................2111.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTCCC------------TTTGGATGCTCTTAGCCCT.................................................................2511.00110000000000
............................................................................................................GCGCGGTGAAAGTGGTGCAG-----TGG...................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............................................................................................................................................................................................................................TT-ACGAGGAG----------CC--GCT------A-C---A-----------------GCA--------------CCA................................................................................................................................................................................................2411.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCGTCGCGCCAG.............................1811.00101000000000
...............ATTGATTTT-TG----TGT-------GTGGA---------------------TA......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCGTCGCGCCAGCAAGCGTTTCG..................2911.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTTAGCCCTCGTGGAGC.........................................................2211.00100000010000
....................TTTT-TG----TGT-------GTGGA---------------------TATTTCGG-------------------CC...........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...........................................................................................................................................................................................................................AATT-ACGAGGAG----------CC--GCT------A-C---A-----------------GCA--------------CC.................................................................................................................................................................................................2511.00100000010000
droSec2
AC-AT--CGTTCGACATTGATTTT-TG----TGT-------GTGGA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----CGGCATT-----AAAATATTTTG-TGAGCGG-------------------------------CCCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------CCACGACGATCCCCC-------------------------------------------------------------------TGC----CAGAGTTCAC------------TTTGGATGCTATTGGCCCTCGTGGAGCTCATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............ATTGATTTT-TG----TGT-------GTGGA---------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200
................TTGATTTT-TG----TGT-------GTGGA---------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAATGTTGAAGCGTCGCG.................................2211.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCGTCGCGCCAGCAAGC........................2311.0010100
..................................................................................................................................................AAATATTTTG-TGAGCGG-------------------------------CCCGCT..................................................................................................................................................................................................................................................................................................2311.0010100
................................................................................................AGCG------GAGCGCGGTGAAAGTGGTGCAG-----C.....................................................................................................................................................................................................................................................................................................................................................................2711.0010100
...........................................................................................................................................................................................................................AATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------C..................................................................................................................................................................................................2411.0010100
..........TCGACATTGATTTT-TG----TGT-------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
droSim2
AC-AT--CGTTCGACATTGATTTT-TG----TGT-------GTGGA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----CGGCATT-----AAAATATTTTG-TGAGCGG-------------------------------CCCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------GCA--------------CCACGACGATCCCCC-------------------------------------------------------------------TGC----CAGAGTTCAC------------TTTGGATGCTATTGGCCCTCGTGGAGCTCATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............CATTGATTTT-TG----TGT-------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1534.671400000094001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCCTCGTGGAGCTCATTAGAAT...............................................2713.00303000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CAC------------TTTGGATGCTATTGGCCCC.................................................................2212.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAGCGTTTCGTACT..............1812.00200200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATGCTATTGGCCCT.................................................................1912.00200200000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCGTACTTGTTGAGTC.....2212.00202000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTCAC------------TTTGGATGCTATTGGCCCTCGT..............................................................2812.00202000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAATGTTGAAGCGTCGCGCC...............................2411.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCAC------------TTTGGATGCTATTGGCCCG.................................................................2311.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTCGTACTTGTTGAGTCC....2111.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTAGAATGTTGAAGCGTCGCGCC...............................2811.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCCTCGTGGAGCTC.......................................................1911.00100010000000000000
....................................................................ATTTCGG-------------------CCAGCG------GAGCGCGGTGAAA....................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACTTGTTGAGTCCGG..1811.00100000100000000000
........................................................................................................................................................................................................................CATAATT-GCGAGGAG----------CC--GCT------............................................................................................................................................................................................................................................2011.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCAC------------TTTGGATGCT..........................................................................1811.00101000000000000000
............................................................................................................................................................................................................TAGTCACACTTGCATAATT-G..........................................................................................................................................................................................................................................................................2011.00101000000000000000
...........................................................................................................................................T-----AAAATATTTTG-TGAGCGG-------------------------------CC......................................................................................................................................................................................................................................................................................................2111.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGAAGCGTCGCGCC...............................2011.00100100000000000000
...............ATTGATTTT-TG----TGT-------GTGGA---------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
........GTTCGACATTGATTTT-TG----TGT-------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
...........................................................................................................................................................................................................................AATT-GCGAGGAG----------CC--GCT------............................................................................................................................................................................................................................................1711.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................CAC------------TTTGGATGCTATTGGCCCT.................................................................2211.00100100000000000000
..............................................................................................................GCGGTGAAAGTGGTGCAG-----TAT...................................................................................................................................................................................................................................................................................................................................................................2160.17100000000000001000
dm3
ACCAT--CGTTCGACATTGATTTT-TG----TGT-------GTGAA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCATT-----AAAATATTTTG-TGAGCGG-------------------------------CTCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------ACA--------------CCACGACGATCCCCC-------------------------------------------------------------------TGC----CAGAGTTCAC------------TTTGGATGCTATTGGCCCTCGTGGAGCTCATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCTCATTAGAATGTTG...........................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001000000000000
........GTTCGACATTGATTTT-TG----TGT-------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
........GTTCGACATTGATTTT-TG----TG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................GCGGTGAAAGTGGTGCAG-----TGG...................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCCTCGTGGAGCTCATT....................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGGAGCTCATTAGAATGTTGA..........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAATGTTGAAGCGTCGCGT................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................GGTGAAAGTGGTGCAG-----TGGCATT-----A.........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................A-A---A-----------------ACA--------------CCACGACGATCCC......................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCTATTGGCCCTCGTGGAGC.........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATTGGCCCTCGTGGAGCTT.......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGTTGAGTCCGGTG1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................GAA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGT........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCGTACTTGTTGAGTC.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............GACATTGATTTT-TG----TGT-------GTGAA---------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCTCGTGGAGCTCATTAG..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................A---------------------TATTTCGG-------------------CCAGCG------GAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................ACA--------------CCACGACGATCCCCC-------------------------------------------------------------------TGC----CAGAG.....................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TGCATAATT-GCGAGGAG----------C........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................A---------------------TATTTCGG-------------------CCAGCG------GAGCGCGGT........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................CCAGCG------GAGCGCGGTGAAAGTGGTG..............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAATGTTGAAGCGTCG...................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TGCATAATT-GCGAGGAG----------CC--G....................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATGCTATTGGCCCTCGTGGAGC.........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................ATATTTTG-TGAGCGG-------------------------------CTCGCT..................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................G-------------------CCAGCG------GAGCGCGGTGAAAGTGGC...............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................GAA---------------------TATTTCGG-------------------CCAGCG------GAGC.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GTTCGACATTGATTTT-TG----TGT-------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................T-------GTGAA---------------------TATTTCGG-------------------CCAGCG------G................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................ACGACGATCCCCC-------------------------------------------------------------------TGC----CAGAGTT...................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTCGCGCCAGCAAGCGTTT....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GACGATCCCCC-------------------------------------------------------------------TGC----CAGA......................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............ATTGATTTT-TG----TGT-------GTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GACGATCCCCC-------------------------------------------------------------------TGC----CAGAGTT...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTGCATAATT-GCGAGGAG----------CC--G....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCGCGCCAGCAAGC........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTCAC------------TTTGGATGCTATTGG.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................G------GAGCGCGGTGAAAGTGGTGCAG-----TGGC..................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................................................ATTTTG-TGAGCGG-------------------------------CTCGCTTA................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................GTGAA---------------------TATTTCGG-------------------CCAGCG------GAGCGCGG.........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCAAGCGTTTCGTACTT.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
............................................................................................................GCGCGGTGAAAGTGGTGC.............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CATT-----AAAATATTTTG-TGAG..........................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................G-TGAGCGG-------------------------------CTCGCTTATTAGTCACAC......................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCGTCGCGCCAGCA...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................A---------------------TATTTCGG-------------------CCAGCG------GAGC.............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................ATAATT-GCGAGGAG----------CC--GCT------A-A---A-----------------ACA--------------...................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATGCTATTGGCCCTCG...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGATTTT-TG----TGT-------GTGAA---------------------TATTTCGG-------------------CC...........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
droEug1
AC-AT--CGTTCGACATTGATTTT-TG----TGT-------------------------------T-TTTTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCAAT-----AAAATATTTTGTTGTGCTG-------------------------------TTCGTTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CCCCACA------A-A---A-----------------AAA--------------CGACGACGATCCCCT-------------------------------------------------------------------TAT----CAGAGTTCACTTTTTCCCC---TTTGGATGTTATTAGCCCTCGTGGAGCTAATTAGAATGTTAAAACGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCTGGTGSizeHit CountTotal NormTotal
No Reads
droBia1
AC-AT--CGTTCGACATTGATTTT-TG----TGT---------------------------------TTTTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCACT-----AAAACATTTT------------------------------------------CGTTTGTTAGTCACACTTGCATAATT-GCGAGGAG----------CCCCGAT------A-A---A------------------AA--------------CCACGACGATCCCCC-------------------------------------------------------------------TGC----CAGAGTTCAC------------TTTGGATGCTATTGGCCCTCGTGGAGCTAATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTGGTTGAGTCCGGGGSizeHit CountTotal NormTotal
No Reads
droTak1
AC-AT--CGTTCGACATTGATTTT-TG----TGT-------GCGTT-------------------T-TTTTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCACT-----AAAATATTTTGTTGTGCGG-------------------------------CTCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--CCCAAT---CAGGCAA----------A-------G----------------------------------------------------------------------------------------------------AAAACAGAGTTCAC------------TTTGGATGCTATTGGCCCTCGTGGAGCTAATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAATCCGGTGSizeHit CountTotal NormTotal
No Reads
droEle1
CC-AT--CGTTCGACATTGATTTT-TGTATTTGTTGTATTTG--TATTG-TAT---------TTTT-TTTTTCGG-------------------CCAGCG------GAGCACGGTGAAAGTGGTGCAGCAGTGTGGCATT-----AAAATATTGTG-TGTGCGC-------------------------------TCCGCTTATTAGTCACACTTGCATAATT-GCGAGGGG----TATAAGCC--CAT------A-G---A------------------AA-----GATATATTATC----AGATCCCC-------------------------------------------------------------------------------------------------TTTGGATGCTATTGGCCCTCGTGGAGCTAATCAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGGGSizeHit CountTotal NormTotal
No Reads
droRho1
AC-AT--CGTTCGACATTGATTTT-TC----GGT-------------------------------T-TTTTTCGG-------------------CCAGCG------GAGCGCGGTGAAAGTGGTGCAG-----TGGCACT-----AAAATATTGTG-TGTGCGG-------------------------------TTCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--CC--AT---A-A---A------------------------------------AAGACGATCCCCT-------------------------------------------------------------------TCC----CAGAGCTCAA-TTT-ACCC---CTTGGATGCTATTGGCCCTCGTGGAAATAATTAGAATGTTGAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGGGSizeHit CountTotal NormTotal
No Reads
droFic1
AC-AT--CGTTCGACATTGATTTT-TG----TGT-------GTGTT-------------------T-TTTTTCGG-------------------CCGTCG------GAGCGCGGTGAAAGTGGTGCAGCA--GTGTCAGC-----AAAAAAT-------------------------------------------------TATTAGTCACACTTGCATAATT-GCGAGGAG----------CC--CCA------A-A---A-----------------A------------------ACGGCGATCCCC--------------------------------------------------------------------TGC----CAGAGCTCACCTTT-GCCCCCTTTTGGATGCTATTGGCCCTCGTGGAGCTTATAAGAATGCTGAAGCGTCGCGCCAGCAAGCGATTCGTACTTGTTGAGTCCGGTGSizeHit CountTotal NormTotal
No Reads
droKik1
AT-AT--CGTTCGACATTGATTTT-TG----TAT-------T-----------------------T-TTTTTCGG-------------------CCAGCGAACGCCGAGCGCGGTGAAAGTGGTGCAGT---GTGGCATT-----AAAATATTGTG-AGTGCGG-------------------------CGG--CCCCGCTTATTAGTCACACTTGCATAATT-GCGAGGAG----------CC-----------------------------------------------------------GATCCCCCAACGCCACAGATACGGATACATATACAGATACAGATAAAGATACGATCCATTACGATCCGATATCATTCC----CCGCCTTGAC-TTT-GCCC---CTTGGATGCTATTGGCCCTCGTGGAGCTATTTAGAATGTTAAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTGSizeHit CountTotal NormTotal
No Reads
droAna3
AC-AT--CGTTCGACATTGATTTT-TGTTGTTGTTGT---TGTGGTTTGT------------TGTTGGTTTTGG------------------------------------GCGGTGAAAGTGGTGCAGTGTTGTGGCATT-----AAAATATTTTA-TGTGCGG------------------------------------TTATTAGTCACACTTGCATAATT-GCGAGGAG----GAGAAGCC--ACCCATATCA------GTCCCAACCCCACCCCAGCT--------------CCACGAAGATCC----------------------------------------------------GTCCCGATCCGAT-----TCCAAT---AAGTTGAC-TTT-GCAC---CTTGGATGCTATTGGCCCTCGTGGAGCTAATTAGAATGTTAAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTGAC-TTT-GCAC---CTTGGATGCT..........................................................................2312.002000002
.................................................................................................................GTGAAAGTGGTGCAGTGTTGTGGC..................................................................................................................................................................................................................................................................................................................................................................2412.002001010
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAC-TTT-GCAC---CTTGGATGCT..........................................................................2411.001100000
................................................GT------------TGTTGGTTTTGG------------------------------------GCGGTGAAAGTG.................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
..........................................................................................................................................................................................................................TAATT-GCGAGGAG----GAGAAGC........................................................................................................................................................................................................................................................2011.001000001
........................................................................GG------------------------------------GCGGTGAAAGTGGTGCAGTGTTGT.....................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................GGAG----GAGAAGCC--ACCCATATCA------GTCCC................................................................................................................................................................................................................................2711.001100000
..............................................................................................................GCGGTGAAAGTGGTGCAGTG.........................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..................................................................................................................................................................................................................................GAGGAG----GAGAAGCC--ACCCAT...............................................................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTATTGGCCCTCGTGGAGCTA.......................................................2511.001000001
.........................................................................................................................................................................................................................ATAATT-GCGAGGAG----GAGAAGCC--ACC..................................................................................................................................................................................................................................................2511.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAGCGTCGCGCCAGCA...........................2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAATGTTAAAGCGTCGCGCCAGCA...........................2811.001000010
.............................................TTTGT------------TGTTGGTTTTGG------------------------------------GCGG.........................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................GTTGGTTTTGG------------------------------------GCGGTGAAAGTGGT...............................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............................................TTTGT------------TGTTGGTTTTGG------------------------------------GCGGTG.......................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
..........................................................................................................................................................................................................ATTAGTCACACTTGCATAATT-GC.........................................................................................................................................................................................................................................................................2311.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................GAC-TTT-GCAC---CTTGGATGCC..........................................................................2011.001010000
........................................................................................................................................................................................................................CATAATT-GCGAGGAG----GAGAA..........................................................................................................................................................................................................................................................2011.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTGAC-TTT-GCAC---CTTGGAT.............................................................................2011.001100000
..............................................TTGT------------TGTTGGTTTTGG------------------------------------GCGGTTT......................................................................................................................................................................................................................................................................................................................................................................................2320.501100000
..................GATTTT-TGTTGTTGTTGT---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.201000001
...................ATTTT-TGTTGTTGTTGT---TG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.051100000
droBip1
AC-AT--CGTTCGACATTGATTTT-TT----TGTTGTGGTTG-------TTGT---------TGTT-GTTTTCGG------------------------------------CGGTGAAAGTGGTGCAGTGTTGTGGCTTTGAAAAAAAATATTGTC-TGTGCGG-------------------------------TTGAGTTATTAGTCACACTTGCATAATT-GCGAAGAG----------CC--ACCCATATCA-T---AGCCCCACCCCTATCCCAGCCCCAGAGATAT----CCGCGAAGATCC----------------------------------------------------GTCCCGATCCGAT-----TCCAAAAC--CGTTGAC-TTT-GCAC---CTTGGATGCTATTGGCCCTCGTGGAGCTAATTAGAATGTTAAAGCGTCGCGCCAGCAAGCGTTTCGTACTTGTTGAGTCCGGTGSizeHit CountTotal NormTotal
No Reads
dp5
AT-ATTCCGTTCGACATTGATTTTCTGC---CGT-------GTGGCTCGTCATCGTCATATC-----GTTGTCGGTGGGGAGAAAGTGTTGCTTGCAGCA------AAAAGTGGTGTGTGTGGTG--------TGGCATA-----AACA---------------GTGTTTTTTTTGTTTGTTCTCCGTTCGGTTTTTCGTTTGTTAGTCAGAATTGCATAATTCTCGTGGGG----------TT--GCCCGT---CCG--------------------------------------AGC---C------------------------------------------------------------------------------------GAGTTCCC-CCT-GACC---CCTGAATGCTATTGGCCCTCGTTGAGCTTGCCAGCATGTTGAAGCGTCGCACCAGTAAGCGTTTTGTACTTGTTGAGTCTGGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGCCAGCATGTTGA..........................................1812.0020200000000
.........................................................ATATC-----GTTGTCGGTGGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
.....................................................................................................................................................................................................................TTGCATAATTCTCGTGGGG----------TT--.....................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCGTCGCACCAGTAAGC........................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGCATGTTGAAGCGTCGCAC................................2411.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGGCCCTCGTTGAGCTT.......................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTATTGGCCCTCGTTG............................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTACTTGTTGAGTCTGGC.2111.0010100000000
..............................................................................................................................................................................................................GTCAGAATTGCATAATTCTCGTGGGG----------T........................................................................................................................................................................................................................................................2711.0010100000000
..........................................................................................................AAAAGTGGTGTGTGTGGTG--------TG....................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..................................................................................................................................................................................................................................................TT--GCCCGT---CCG--------------------------------------AGC---C------------------------------------------------------------------------------------GAGTTC..................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................AATTCTCGTGGGG----------TT--GCC..................................................................................................................................................................................................................................................1811.0011000000000
...........................................................................................................................................................................TTTTGTTTGTTCTCCGTTCG............................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................GTCATATC-----GTTGTCGGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCCTCGTTGAGCTTGCC....................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACTTGTTGAGTCTGGC.2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCCCTCGTTGAGCTTGCC....................................................2311.0010010000000
........................................................................................................................................................................TTTTTTTGTTTGTTCTCCGTT..............................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................TTTTGTTTGTTCTCCGTTCGGT..........................................................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................................................................................................................................GTTAGTCAGAATTGCATAATT............................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTTGAGCTTGCCAGCATG..............................................2111.0010000001000
...............................................................................................................................................................................................................................CTCGTGGGG----------TT--GCCCGT---CC..........................................................................................................................................................................................................................................1911.0010100000000
...........................................GGCTCGTCATCGTCATATC-----GT......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
AT-ATTCCGTTCGACATTGATTTC-TGC---CGT-------GTGGCTCGTCATCGTCATATC-----GTTGTCGGTGGGGAGAAAGTGTTGCTTGCAGCA------AAAAGTGGTGTGTGTGGTG--------TGGCATA-----AACA---------------GTGTTT-TTTTGTTTGTTCTCCGTTCGGTTTTTCGGTTGTTAGTCAGAATTGCATAATTCTCGTGGGG----------TT--GCCCGT---CCG--------------------------------------AGC---C------------------------------------------------------------------------------------GAGTTCCC-CCT-GACC---CCTGAATGCTATTGGCCCTCGTTGAGCTAGCCAGCATGTTGAAGCGTCGCACCAGTAAGCGTTTTGTACTTGTTGAGTCTGGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................GTCATATC-----GTTGTCGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
......................................................GTCATATC-----GTTGTCGGTGGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................GTTAGTCAGAATTGCATAATT............................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................A------AAAAGTGGTGTGTGTGGT...............................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.........................................................ATATC-----GTTGTCGGTGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..............................................................................................................GTGGTGTGTGTGGTG--------TGGC..................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTAGCCAGCATGTTGAAGC.......................................2511.001010000
....................TTTC-TGC---CGT-------GTGGCTCGTCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
droWil2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAGTCAGACTTGCATAAGTCTAGTGGGAGGGGCAAA--CC--CCG-AC---A-A---A------------------AA-------------------GCTATATACT--------------------------------------------------------------------TCAAAATATTGCATAT------------TGTGAATGCTTTTGGCTCTCATTGCCTTTGTCAAAATGCTAAAGCGTCGGGCTAGCAAGCGTTTTGTACTTGTTGAATCTGGCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAATGCTTTTGGCTCTCATTGC...........................................................2511.00101000
..........................................................................................................................................................................................................................TAAGTCTAGTGGGAGGGGCAAA--CC--CCG-AC---............................................................................................................................................................................................................................................2911.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAAATGCTAAAGCGTCGGGCTAG.............................2711.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCGGGCTAGCAAGCGTT.....................2111.00101000
..........................................................................................................................................................................................................................TAAGTCTAGTGGGAGGGGCAAA--CC--CCG-A................................................................................................................................................................................................................................................2811.00101000
...............................................................................................................................................................................................................................CTAGTGGGAGGGGCAAA--CC--CCG-A................................................................................................................................................................................................................................................2311.00100100
droVir3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAATGATCTTGGCCCTAATTGCGTATGCCAAAATGTTGAAGCGTCGCGCCAGCAAACGTTTTGTGCTCGTGGAAACCGGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCGTCGCGCCAGCA...........................1811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGCCCTAATTGCGTATGCCA...................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTAATTGCGTATGCCAAAA................................................2211.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGTTGAAGCGTCGC..................................1911.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCGCGCCAGCAAACGTTTTGT.................2511.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAATTGCGTATGCCAAAATGTTGAAGC.......................................2911.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTTTTGTGCTCGTGGAAACC....2411.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCTCGTGGAAACCGGT.2111.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCGCCAGCAAACGTTTTGTGCT..............2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTGAAGCGTCGCGCC...............................1911.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGATCTTGGCCCTAATTGC...........................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAAATGTTGAAGCGTCGCGCC...............................2611.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAAATGTTGAAGC.......................................1811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGCGTATGCCAAAATGTTGAAGC.......................................2711.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCCAAAATGTTGAAGC.......................................1911.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAATGATCTTGGCCCTAATTGCGTTCGCCAAAATGTTAAAGCGTCGCGCCAGCAAACGGTTTGTGCTTGTGGAGACAGGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGTTTGTGCTTGTGGA........2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAGCGTCGCGCCAGC............................1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCGCGCCAGCAAACG.......................1811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGCTTGTGGAGACA....1911.001100000
droGri2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAATGCTCTTGGCCATAATTGCATGCGTTAAAATGTTAAAGCGTCGCGCCAGCAAACGTTTTGTTCTCCTTGAAACCGGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:52 PM