der_1316

Name	Class	Family	Strand
DNAREP1_DM	RC	Helitron	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCGATTCACCGATTCTTCTCACTTTTGTAAAGTACTTGAGACCGTTGGTGGTAAGTAAACAGAATACATATAAAACAAGATAGAATGCTAGAGTCGAGTTCCCCGACTATCAGATACCCGTTACTCAGCTAGTGGAAGTGCAAACGAGAAATTTCAATAGTTTCTGGAATATCGGTAGAAATTGGGTAACAAATAATAAAATGAAAAAAAGACTTACAAATTTTTAAAATGTGTGGGCGTGGCAAACTTTT ************************************************.........................................(((((.......)))))...........((((((((((((.(((..((....)).(((((((.....)))))))......))).)))...)))))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V040 embryo	GSM1528801 follicle cells	M055 female body
...............................................................ATACATGTAAAACAACATAGAC......................................................................................................................................................................	22	3	3	0.33	1	1	0	0
..............................AGTACTTGAGACCAT..............................................................................................................................................................................................................	15	1	5	0.20	1	0	1	0
......................................................................................................................................................................................TGGGTAGCAAATAATCGAATG................................................	21	3	9	0.11	1	0	0	1

AGCTAAGTGGCTAAGAAGAGTGAAAACATTTCATGAACTCTGGCAACCACCATTCATTTGTCTTATGTATATTTTGTTCTATCTTACGATCTCAGCTCAAGGGGCTGATAGTCTATGGGCAATGAGTCGATCACCTTCACGTTTGCTCTTTAAAGTTATCAAAGACCTTATAGCCATCTTTAACCCATTGTTTATTATTTTACTTTTTTTCTGAATGTTTAAAAATTTTACACACCCGCACCGTTTGAAAA ************************************************.........................................(((((.......)))))...........((((((((((((.(((..((....)).(((((((.....)))))))......))).)))...)))))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528801 follicle cells	V040 embryo	M055 female body
............................................................................................................TAGTCTATGGGCAATGAGTCGAT........................................................................................................................	23	0	20	1.25	25	25	0	0
....................................................................................................................................................................................................ATATTACTTTTTTTCTGTCTG..................................	21	3	17	0.06	1	0	1	0
....................................................................................................................GGGCAATGAGTCGATCACCTT..................................................................................................................	21	0	20	0.05	1	0	1	0
.................................................................................................CAAGGGGCTGATAGTCTATGGGCAAT................................................................................................................................	26	0	20	0.05	1	0	0	1
...........................................................................................TCAGCTCAAGGGGCTGATAGTCT.........................................................................................................................................	23	0	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droEre2	scaffold_4929:14891899-14892149 -	der_1316	TCGATT-CAC-------C-----------------GATTCTTCTCA-CTTTT-----------------------------------------GT---AAAGTACTTGAGACCGTTGGTGGTAAGTAAACA-G----------AATACATATA---------------------------AAACAAGA-TAGAA-TGCTAGAGTCGAGTT-CCCCGACTATCAGATACCCGTTACTCAG---------------------------CTAGTGGAAGTGC------AAACGAGAAATTTCA-ATAGTT-------TCTGGAATATCGGTAG---AAATTGGGTAACAAATAATAAAATGAAAAA--------------------------------------------------------------------------------------------------------------------------------------AA-GACTT----------------------------------ACAAATTTTTAAAA------------TGTG---------TG---------GGCGTGGCAAACTTT---------T
droYak3	v2_chr2L_random_010:448991-449261 -		AT-------------------------CAATTTTTCGTTTTTT--------TGTG--ATGTTGATTTACGGGTTGAGTGTTGGTAAGAGTTC-AA----AGC----------------------TTACATG-A----------AAAATAGGAT---------------------------AAACAAGA-GAGAA-TGCTTCAGTCGAGTT-CCCCGATTATCAGAGACCCGTTACTCAG---------------------------CTAGTGGAAGTGC------GAACGAAAAATTTTA-ACAATT-------TCTGAAATATCGGTAG---------------------------------------------------------------------------------------------------------------------------------------AAATTGAGAAAAAAAA-AATAATCAAAAGAAAAAAAATTAAAAA------------T-----------------GGAGGAGTGTTAGT------------TTTG---------GGCTGTTTGTGGGCATGGCAAAT-------------
droSec2	scaffold_66:39814-40055 -		AT-------------------------TCACCATTCATTCCTCTCA-ATGTA----------------------------------------TAT---AAATAACTT-----------C-TTAAGTAAACGCA----------AGTCAAATTA---------------------------AAACAGGAAGAAAA-CCCTATAGTCGAATT-CACCGACTATTAGATACCTTTTACTCAG---------------------------CTAGTGGAAATGC------GAACGCGAAATTTCATACTTTT-------TCTGGTATATTGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATA-TC-TATATCTAAATGGGAAAAAATTA------------------------------------ACATTTTTCAAA------------AGTG---------TG---------GGCTTGGCAGCTTTG---------G
droSim2	node_1680:1903-2135 +		AT-------------------------TCACCATTCATTCCTCTCA-ATGTA----------------------------------------TAT---AAATAACTT-----------C-TTAAGTAAACGCA----------AGTAAAATTA---------------------------AAACAGCAAGAAAA-AGCTATAGTCGAATT-CACCGACTATTAGATACCTTTTACTCAG---------------------------CTAGTGGAAATGC------GAACGCGAAATTTCATACTTTT-------TCTGGGATATTGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGGAAAAAATTA------------------------------------ACATTTTTCAAA------------AGTG---------TG---------GGCTTGGCAGCTTTG---------G
dm3	chr4:958536-958748 -		AT-------------------------TTTTCAA-----------------------------------------------------------------AAATGAGTGTGGGCGTT--T-T----------------------------------TAAGCTAAACAAATAATAATATAAA--ATA----------AGAGATAGTCGAGTT-CCCCGACTATCAGATATCCGTTACTCAA---------------------------CTGGTGGAAACGC------GAACTAGAAAATTCATAAATTT-------TCTGGTATATCGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGAAAATAA-----------AATGAGAAAAAACTA----------------------------------AAAAATTGTTCAAC------------AGTT---------TG---------CGCGTGACAGT--TT---------T
droEug1	scf7180000409798:1044327-1044530 +		TCGATT-TGTTGTGCATCATCATCTGGACACCA-TCGTTGCTCAGA-ATG-----------------------------------------GTAT-----------------------------------A-G----------GAAACATTGT---------------------------ATACAAGA-GGAAA-CGCTATAGTCGAGTG-CCGCGACTATTAGATACCCTTTACTGTTTTACACAATTTTAAAATATTCATTTTTCTAGAGGAAATTC------GCATTTGGAATATCATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-AACCT---------------------------ACA-------------------------------------------TG---------CTTAATCCGAACTTT---------C
droBia1	scf7180000299298:15857-16085 +		TT-------------------------TTGGAAA-------------------------------------------------------------------GTTTTTAAATGTGTT----------GTAATAAAATTAATTGCATATATGTAA---------------------------AAACAAGG-AATAA-CGCTAAAGTCGAGTA-CTTCTACTATCAGAGACCCGTTACTTGG---------------------------GAG---GGAGCGA------AAAATGGA---------------------------------------------------------------------------------------------------GATATAAAAGGAGAT-------------------------------------ATATCAGCAGC----TAAAAGATATTGTAAA-------------------------------------------GCACCACGCAATTT-------CTAATCAGTATGTACGCGTAGACAAATTTG---------TG---------GGCGTGGCAAACTTT---------T
droTak1	scf7180000415262:58511-58742 -		TCGATT-T---------------------------CATGGCTCACT-AGA-----------------------------------------TTGTTGGGAAAATTTGATTCGTTTT----------AGAAGTA----------AATTAAATAC---------------------------AAACAAGA-GAGAA-CGCTATAGTCGGGTG-CCCCGACTATCAGATACCCGTTACTCAG---------------------------CTAAAGGAAGTGC------GAAGGAGG-----------------------------------------------------------------------------------------------TGGAGATAAAAACTTTGATCCGCCGTAACTTTTTAACGAATGGTCCGATTTAAAAAATTTCTTCTACATTTCGATAGGTATTGATAAACAA--------------------------------------------------------------------------------------------------------------------------------------C
droEle1	scf7180000490971:345848-346045 +		AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAGA-AAAAA-CGCTATAGTCGTGTT-TCCCGACTATCAGACACCCGTTACTCAG---------------------------CTAACTA-ACTTC------AAACTAAA-CTAACTTACTTCT-------TCGAGT--AACGGGTGTAAAAAT----------------------------------------------------------------------------------------------------------------------------------CTTGA-GTATA-CCATAGATTTGA----------CCG--------------------AAACAC--ACACACA-----GAGTCCAAT------------AGCTAAAGTCAAAGT---------GACGTGACAGACTTTCGCGATTCGT
droRho1	scf7180000762682:14296-14520 +		TCAATT-TCCAA-----C-----------------AAATCACCTTG-GTTTAGCAAACAGTTGATACAC---TTAAGTAA--------------------------------------TGTTAAGTCAGCA-C------------------T-TTTT------AGGAAATATTATATAAA--ACAAGA-GAGAA-CGCTATAGTCGGGTG-CCCCGACTATCAGATACCCGTTACTCAG---------------------------GTAAAGGGAGTGC------GAGGGAGA-----------------------------------------------------------------------------------------------TGGAGATAGAAACTTTGATCACGCATAAC------------------------------------------------------------------------------------------------------------------------------TTTTTAACGA------------AAGG---------TC---------CGATTTGAAAAATTT---------T
droFic1	scf7180000454082:702841-702987 +		AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-GAGAA-CGCTATAACCGACTG-CCTCGAATAACAGATACCCCTTACTCAA---------------------------ATAAA---AATGCTTAATGGGCCCAATGAATTTATTAATAT-------TTAAATATCTTTTCAG---ATAGCAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------ACG--------------------A----------------------ATCATA------------AACG---------TG---------GGCGTGACAAACTTA---------G
droKik1	scf7180000302698:216910-217011 -		TTGATG-------------------------GTTTAATATAAA----TAA-------AAATGAAAATATAAATTA------------------------------------------------------------------------------------------------------------------------AATATTAATTAAATT-CT---------------------------------------------------------------------------------------------------------------------------------------------------AAA--------------------------------------------------------------------------------------------------------------------------------------AA-TATTT----------------------------------AAAAATCTCTAAAT------------CTTG---------TA---------CATTTTATAGGCATT---------T
droAna3	scaffold_13165:250041-250134 -		AA-------------------------TCGAAAA-------------------------------------------------------------------ACAA---------------------AAAGAAA----------ATTTAAAAAA---------------------------AAACAACA-AAAAA---------------------------------------------------------------------------------------------------AATTTTA-------AAAAATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAAAAATAAAAAAAAAATTT-------ATAAATCATTAAA-------------------------------------------------------------A
droBip1	scf7180000396574:521943-522097 +		AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAGA-AAGAACGGCTTTAGTCGCGTT-TCCCGACTATATTATATCCGGTATTCAT---------------------------CTCTTTCAA-TAC------ATATGGGCATTTCC---------------TGGGGT--CGCGAACGTAC--------------GT--------------TCGTACGCAATTAGTGCCAAAAAATTAAAGAAA----------------------------------------------------------------------------------------------------------AAA------------------------------------ACATTTTCTGAT------------A------------------------------------CT---------T
dp5	3:8113716-8113828 -		CG-------------------------CTGCCCCTAATATTTGGCATGCACT----------------------------------------CGA---GAACAATTA-----------C-AGAACAAAGTATG----------AAGCGAGAAA---------------------------AAACAAAT-AGGCG-CACTACAGTCGAGTA-TTCCGACTGGGTGATACCCGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_4927:1904-2000 +		AAAAAA-GATTTTTTAGTAATTTT-TTTTATAA-----------------TT-----------------------------------------GA---AAAGAAT-----------------------------------------AAATGAA---------------------------TAGCAAAT-AATAA-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA----------------------------------------------------------------------------------------------------------AAA-------------------AAAAATTT-------AGATAGAGTTTAAA------------AAC---------------------------------------------G
droWil2	scf2_1100000004521:8201338-8201449 -		AGAGAAATCCAG-----C--------------------AAATT----CTA-----------------------------------------TAACTTTGAGTAT--------------T-T----------------------------------TAAATTTAAGAAAAACTGATTTAAA--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAGAAAATTT-------TCAAATTTTTAGTA------------TGCG---------TA---------CACACATTAAAAATA---------T
droVir3	scaffold_12855:9094086-9094191 +		AA-------------------------ACAATAA-------------------------------------------------------------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCA-ATAGTT-------TTTTACATATCTTCAA---AATGTAGAAGACAAGTAGAAGTAGTACAAG--------------------------------------------------------------------------------------------------------------------------------------ACAATTTATAAA------------AGATTT----------------TTTTTAACAA------------GGTA---------TA---------AG----------------------C
droMoj3	scaffold_6053:234-411 +		GTATTA-------------------------A--------------------------------------------------------------------------------------------ATAAATA-A----------AATAAAACAA---------------------------AAACAAGT-AAGAA-AACTCTAGTCGAGAGTGCTCGACTAGATACTACCCTGAACCCAA---------------------------CTAACAAAAATGC------CCATTTACTATGGCT-AAAATT-------TC---------AATT----------------------------------TCG-ATGTATTTAAAA--------------------------------------------------------------------------------------ATA-----------------------------------------TAAATTAAATAGAAAACT---------------CAT-TTATGAA------------AATG---------TA---------A--------AA-------------A
droGri2	scaffold_15245:16865028-16865172 -		CA-------------------------TAGT-----------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGT-AGGAA-AGCTGCAGGCGAGTGAGCTCAACTACGAGATACCCTGCAGCCAG---------------------------GTATTAAATATAA----------------TATTC-------AAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGACAATGAAAATACGATTA-------CGACTTCATTTAAA------------AT-----------TG---------GGCGTTTCTGATTCG---------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

TCGATT-CAC-------C-----------------GATTCTTCTCA-CTTTT-----------------------------------------GT---AAAGTACTTGAGACCGTTGGTGGTAAGTAAACA-G----------AATACATATA---------------------------AAACAAGA-TAGAA-TGCTAGAGTCGAGTT-CCCCGACTATCAGATACCCGTTACTCAG---------------------------CTAGTGGAAGTGC------AAACGAGAAATTTCA-ATAGTT-------TCTGGAATATCGGTAG---AAATTGGGTAACAAATAATAAAATGAAAAA--------------------------------------------------------------------------------------------------------------------------------------AA-GACTT----------------------------------ACAAATTTTTAAAA------------TGTG---------TG---------GGCGTGGCAAACTTT---------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

AT-------------------------CAATTTTTCGTTTTTT--------TGTG--ATGTTGATTTACGGGTTGAGTGTTGGTAAGAGTTC-AA----AGC----------------------TTACATG-A----------AAAATAGGAT---------------------------AAACAAGA-GAGAA-TGCTTCAGTCGAGTT-CCCCGATTATCAGAGACCCGTTACTCAG---------------------------CTAGTGGAAGTGC------GAACGAAAAATTTTA-ACAATT-------TCTGAAATATCGGTAG---------------------------------------------------------------------------------------------------------------------------------------AAATTGAGAAAAAAAA-AATAATCAAAAGAAAAAAAATTAAAAA------------T-----------------GGAGGAGTGTTAGT------------TTTG---------GGCTGTTTGTGGGCATGGCAAAT-------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................GTTGAGTGTTGGTAAGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AGACCCGTTACTCAG---------------------------CTAGTGGAAG..................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAG---------------------------CTAGTGGAAGTGC------GAAC.....................................................................................................................................................................................................................................................................................................................................	24	17	0.12	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CCCGTTACTCAG---------------------------CTAGTGGAAGTGC------.........................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droSec2

AT-------------------------TCACCATTCATTCCTCTCA-ATGTA----------------------------------------TAT---AAATAACTT-----------C-TTAAGTAAACGCA----------AGTCAAATTA---------------------------AAACAGGAAGAAAA-CCCTATAGTCGAATT-CACCGACTATTAGATACCTTTTACTCAG---------------------------CTAGTGGAAATGC------GAACGCGAAATTTCATACTTTT-------TCTGGTATATTGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATA-TC-TATATCTAAATGGGAAAAAATTA------------------------------------ACATTTTTCAAA------------AGTG---------TG---------GGCTTGGCAGCTTTG---------G	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................TT-----------C-TTAAGTAAACGCA----------AGTCAAATTA---------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------------ACATTTTTCAAA------------AGTG---------TG---------GGCTTG...................	26	2	0.50	1	1	0	0	0

droSim2

AT-------------------------TCACCATTCATTCCTCTCA-ATGTA----------------------------------------TAT---AAATAACTT-----------C-TTAAGTAAACGCA----------AGTAAAATTA---------------------------AAACAGCAAGAAAA-AGCTATAGTCGAATT-CACCGACTATTAGATACCTTTTACTCAG---------------------------CTAGTGGAAATGC------GAACGCGAAATTTCATACTTTT-------TCTGGGATATTGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGGAAAAAATTA------------------------------------ACATTTTTCAAA------------AGTG---------TG---------GGCTTGGCAGCTTTG---------G	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................ATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGGA.....................................................................................................................	25	1	70.00	70	0	0	0	0	0	0	19	28	17	4	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGGAA....................................................................................................................	26	1	12.00	12	0	0	0	0	0	0	0	0	4	6	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------------ACATTTTTCAAA------------AGTG---------TG---------GGCTTGGC.................	28	1	10.00	10	0	0	0	0	0	0	3	5	0	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGG......................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	3	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TGGGATATTGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAA..........................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA------------------------------------ACATTTTTCAAA------------AGTG---------TG---------GGCTTGGC.................	29	1	3.00	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------------ACATTTTTCAAA------------AGTG---------TG---------GGCTT....................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAA------------AGTG---------TG---------GGCTTGGCAGC..............	24	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAG---------------------------CTAGTGGAAATGC------G........................................................................................................................................................................................................................................................................................................................................	18	20	1.20	24	0	0	0	0	20	0	0	0	0	0	4	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGGA.....................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------------ACATTTTTCAAA------------AGTG---------TG---------GGCTTGG..................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGGAAAA..................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGG.......................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTGGGATATTGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGA...........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA------------------------------------ACATTTTTCAAA------------AGTG---------TG---------GGC......................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGGAAAAAA................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCAAA------------AGTG---------TG---------GGCTTGGCAGC..............	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAG---------------------------CTAGTGGAAATGC------GAACG....................................................................................................................................................................................................................................................................................................................................	25	17	0.76	13	0	0	0	0	0	0	1	9	0	2	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAG---------------------------CTAGTGGAAATGC------GAACGC...................................................................................................................................................................................................................................................................................................................................	26	16	0.56	9	0	0	7	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGGAAA...................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TGGGATATTGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTG............................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGGA.....................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTGAATAA-----------AATGGGA.....................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AATGGGAA....................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAG---------------------------CTAGTGGAAATGC------GAAC.....................................................................................................................................................................................................................................................................................................................................	24	19	0.42	8	0	0	3	0	0	0	0	2	0	3	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TGGGATATTGATAG---------------------------------------------------------------------------------------------------------------------------------------A....................................................................................................................................................	15	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTTTCAAA------------AGTG---------TG---------GGCTTGGC.................	26	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TAGTGGAAATGC------GAACGCGAAATT.............................................................................................................................................................................................................................................................................................................................	24	18	0.33	6	0	0	1	0	0	0	0	0	1	3	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAA------------AGTG---------TG---------GGCTTGG..................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GTGGAAATGC------GAACGCGAAATTTCA..........................................................................................................................................................................................................................................................................................................................	25	12	0.25	3	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................TTTACTCAG---------------------------CTAGTGGAAATGC------GAACG....................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAG---------------------------CTAGTGGAAATGC------GAACGCGA.................................................................................................................................................................................................................................................................................................................................	25	15	0.20	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CTCAG---------------------------CTAGTGGAAATGC------GAACGCG..................................................................................................................................................................................................................................................................................................................................	25	15	0.20	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CTCAG---------------------------CTAGTGGAAATGC------GAACGC...................................................................................................................................................................................................................................................................................................................................	24	16	0.19	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------------ACATTTTTCAAA------------AG...............................................	16	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAG---------------------------CTAGTGGAAATGC------GAAT.....................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................ATGC------GAACGCGAAATT.............................................................................................................................................................................................................................................................................................................................	16	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAG---------------------------CTAGTGGAAATGC------GAACGCGAAA...............................................................................................................................................................................................................................................................................................................................	27	14	0.14	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAG---------------------------CTAGTGGAAATGC------GAACGCG..................................................................................................................................................................................................................................................................................................................................	27	15	0.13	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAG---------------------------CTAGTGGAAATGC------GAACGCG..................................................................................................................................................................................................................................................................................................................................	24	15	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAA------------AGTG---------TG---------GGCTTG...................	17	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAG---------------------------CTAGTGGAAATGC------GAACG....................................................................................................................................................................................................................................................................................................................................	22	17	0.12	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CTCAG---------------------------CTAGTGGAAATGC------GAACG....................................................................................................................................................................................................................................................................................................................................	23	17	0.12	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TTTT-------TCTGGGATATTGATAG---------------------------------------------------------------------------------------------------------------------------------------ATAT.................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTAGTGGAAATGC------GAAC.....................................................................................................................................................................................................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTAGTGGAAATGC------GAACGCGAAATTTC...........................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TAGTGGAAATGC------GAACGCGAAATTTC...........................................................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAG---------------------------CTAGTGGAAATGC------.........................................................................................................................................................................................................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAG---------------------------CTAGTGGAAATGC------GAACGCGAAATT.............................................................................................................................................................................................................................................................................................................................	29	14	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CTCAG---------------------------CTAGTGGAAATGC------GAACGCGAAA...............................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAA------------AGTG---------TG---------GGCT.....................	15	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAG---------------------------CTAGTGGAAATGC------GAACGCGA.................................................................................................................................................................................................................................................................................................................................	28	15	0.07	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAG---------------------------CTAGTGGAAATGC------GAACGC...................................................................................................................................................................................................................................................................................................................................	23	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................G---------------------------CTAGTGGAAATGC------GAACGCGAAATT.............................................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TT-------TCTGGGATATTGATA.............................................................................................................................................................................................................................................................................................	17	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AG---------------------------CTAGTGGAAATGC------GAACGC...................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTAGTGGAAATGC------GAACGCGAAATT.............................................................................................................................................................................................................................................................................................................................	25	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAG---------------------------CTAGTGGAAATG................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AG---------------------------CTAGTGGAAATGC------.........................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CTCAG---------------------------CTAGTGGAAATGC------G........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAAT.........................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAG---------------------------CTAGTGGAAATGC------GA.......................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAG---------------------------CTAGTGGAAATGC------G........................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGTGAATAA-----------AAT.........................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TGGAAATGC------GAACGCGAAAT..............................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAG---------------------------CTAGTGGAAATGC------GAACGCGTTC...............................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TGC------GAACGCGAAATT.............................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TAGTGGAAATGC------GAA......................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................CAG---------------------------CTAGTGGAAATGC------G........................................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTCAAA------------AGTG---------TG---------GG.......................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAAA------------AGTG---------TG---------GGC......................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TGGAAATGC------GAACGCGAAATT.............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................ACTCAG---------------------------CTAGTGGAAATGC------.........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TAGTGGAAATGC------GAAC.....................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAG---------------------------CTAGTGGAAATGC------GAA......................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................AGTGGAAATGC------GAACGCGA.................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTAGTGGAAATGC------GA.......................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

AT-------------------------TTTTCAA-----------------------------------------------------------------AAATGAGTGTGGGCGTT--T-T----------------------------------TAAGCTAAACAAATAATAATATAAA--ATA----------AGAGATAGTCGAGTT-CCCCGACTATCAGATATCCGTTACTCAA---------------------------CTGGTGGAAACGC------GAACTAGAAAATTCATAAATTT-------TCTGGTATATCGATAG---------------------------------------------------------------------------------------------------------------------------------------ATATTGGAAAATAA-----------AATGAGAAAAAACTA----------------------------------AAAAATTGTTCAAC------------AGTT---------TG---------CGCGTGACAGT--TT---------T	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................CCGTTACTCAA---------------------------CTGGTGGAAACGC------GA.......................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CCGTTACTCAA---------------------------CTGGTGGAAACG................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TACTCAA---------------------------CTGGTGGAAACGC------GAACTA...................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------------------------------------------------------------------------------ATATTGGAAAATAA-----------AATGAGAAAAAAC...............................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................CCCGACTATCAGATATCCGTTACT..........................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CCCGACTATCAGATATCCGTTA............................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................CCCGACTATCAGATATCCGTT.............................................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CGACTATCAGATATCCGTTAC...........................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CTATCAGATATCCGTTACTC.........................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CGACTATCAGATATCCGT..............................................................................................................................................................................................................................................................................................................................................................................................	18	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CGAGTT-CCCCGACTATCAGATA...................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CGAGTT-CCCCGACTATCAGAT....................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

TCGATT-TGTTGTGCATCATCATCTGGACACCA-TCGTTGCTCAGA-ATG-----------------------------------------GTAT-----------------------------------A-G----------GAAACATTGT---------------------------ATACAAGA-GGAAA-CGCTATAGTCGAGTG-CCGCGACTATTAGATACCCTTTACTGTTTTACACAATTTTAAAATATTCATTTTTCTAGAGGAAATTC------GCATTTGGAATATCATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-AACCT---------------------------ACA-------------------------------------------TG---------CTTAATCCGAACTTT---------C	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TT-------------------------TTGGAAA-------------------------------------------------------------------GTTTTTAAATGTGTT----------GTAATAAAATTAATTGCATATATGTAA---------------------------AAACAAGG-AATAA-CGCTAAAGTCGAGTA-CTTCTACTATCAGAGACCCGTTACTTGG---------------------------GAG---GGAGCGA------AAAATGGA---------------------------------------------------------------------------------------------------GATATAAAAGGAGAT-------------------------------------ATATCAGCAGC----TAAAAGATATTGTAAA-------------------------------------------GCACCACGCAATTT-------CTAATCAGTATGTACGCGTAGACAAATTTG---------TG---------GGCGTGGCAAACTTT---------T	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCGATT-T---------------------------CATGGCTCACT-AGA-----------------------------------------TTGTTGGGAAAATTTGATTCGTTTT----------AGAAGTA----------AATTAAATAC---------------------------AAACAAGA-GAGAA-CGCTATAGTCGGGTG-CCCCGACTATCAGATACCCGTTACTCAG---------------------------CTAAAGGAAGTGC------GAAGGAGG-----------------------------------------------------------------------------------------------TGGAGATAAAAACTTTGATCCGCCGTAACTTTTTAACGAATGGTCCGATTTAAAAAATTTCTTCTACATTTCGATAGGTATTGATAAACAA--------------------------------------------------------------------------------------------------------------------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAGA-AAAAA-CGCTATAGTCGTGTT-TCCCGACTATCAGACACCCGTTACTCAG---------------------------CTAACTA-ACTTC------AAACTAAA-CTAACTTACTTCT-------TCGAGT--AACGGGTGTAAAAAT----------------------------------------------------------------------------------------------------------------------------------CTTGA-GTATA-CCATAGATTTGA----------CCG--------------------AAACAC--ACACACA-----GAGTCCAAT------------AGCTAAAGTCAAAGT---------GACGTGACAGACTTTCGCGATTCGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCAATT-TCCAA-----C-----------------AAATCACCTTG-GTTTAGCAAACAGTTGATACAC---TTAAGTAA--------------------------------------TGTTAAGTCAGCA-C------------------T-TTTT------AGGAAATATTATATAAA--ACAAGA-GAGAA-CGCTATAGTCGGGTG-CCCCGACTATCAGATACCCGTTACTCAG---------------------------GTAAAGGGAGTGC------GAGGGAGA-----------------------------------------------------------------------------------------------TGGAGATAGAAACTTTGATCACGCATAAC------------------------------------------------------------------------------------------------------------------------------TTTTTAACGA------------AAGG---------TC---------CGATTTGAAAAATTT---------T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-GAGAA-CGCTATAACCGACTG-CCTCGAATAACAGATACCCCTTACTCAA---------------------------ATAAA---AATGCTTAATGGGCCCAATGAATTTATTAATAT-------TTAAATATCTTTTCAG---ATAGCAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------ACG--------------------A----------------------ATCATA------------AACG---------TG---------GGCGTGACAAACTTA---------G	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGATG-------------------------GTTTAATATAAA----TAA-------AAATGAAAATATAAATTA------------------------------------------------------------------------------------------------------------------------AATATTAATTAAATT-CT---------------------------------------------------------------------------------------------------------------------------------------------------AAA--------------------------------------------------------------------------------------------------------------------------------------AA-TATTT----------------------------------AAAAATCTCTAAAT------------CTTG---------TA---------CATTTTATAGGCATT---------T	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AA-------------------------TCGAAAA-------------------------------------------------------------------ACAA---------------------AAAGAAA----------ATTTAAAAAA---------------------------AAACAACA-AAAAA---------------------------------------------------------------------------------------------------AATTTTA-------AAAAATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAAAAATAAAAAAAAAATTT-------ATAAATCATTAAA-------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................AAA---------------------------AAACAACA-AAAAA---------------------------------------------------------------------------------------------------AA...............................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droBip1

AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAGA-AAGAACGGCTTTAGTCGCGTT-TCCCGACTATATTATATCCGGTATTCAT---------------------------CTCTTTCAA-TAC------ATATGGGCATTTCC---------------TGGGGT--CGCGAACGTAC--------------GT--------------TCGTACGCAATTAGTGCCAAAAAATTAAAGAAA----------------------------------------------------------------------------------------------------------AAA------------------------------------ACATTTTCTGAT------------A------------------------------------CT---------T	Size	Hit Count	Total Norm	Total
No Reads

dp5

CG-------------------------CTGCCCCTAATATTTGGCATGCACT----------------------------------------CGA---GAACAATTA-----------C-AGAACAAAGTATG----------AAGCGAGAAA---------------------------AAACAAAT-AGGCG-CACTACAGTCGAGTA-TTCCGACTGGGTGATACCCGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................GTCGAGTA-TTCCGACTGGGT.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAAAAA-GATTTTTTAGTAATTTT-TTTTATAA-----------------TT-----------------------------------------GA---AAAGAAT-----------------------------------------AAATGAA---------------------------TAGCAAAT-AATAA-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA----------------------------------------------------------------------------------------------------------AAA-------------------AAAAATTT-------AGATAGAGTTTAAA------------AAC---------------------------------------------G	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................A---AAAGAAT-----------------------------------------AAATGAA---------------------------TAGCAAAT-AAT......................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0

droWil2

AGAGAAATCCAG-----C--------------------AAATT----CTA-----------------------------------------TAACTTTGAGTAT--------------T-T----------------------------------TAAATTTAAGAAAAACTGATTTAAA--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAGAAAATTT-------TCAAATTTTTAGTA------------TGCG---------TA---------CACACATTAAAAATA---------T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................................TAAA--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAGAAAATTT-------TCAAATTTT..................................................................	28	1	1.00	1	0	0	1	0	0

droVir3

AA-------------------------ACAATAA-------------------------------------------------------------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCA-ATAGTT-------TTTTACATATCTTCAA---AATGTAGAAGACAAGTAGAAGTAGTACAAG--------------------------------------------------------------------------------------------------------------------------------------ACAATTTATAAA------------AGATTT----------------TTTTTAACAA------------GGTA---------TA---------AG----------------------C

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

GTATTA-------------------------A--------------------------------------------------------------------------------------------ATAAATA-A----------AATAAAACAA---------------------------AAACAAGT-AAGAA-AACTCTAGTCGAGAGTGCTCGACTAGATACTACCCTGAACCCAA---------------------------CTAACAAAAATGC------CCATTTACTATGGCT-AAAATT-------TC---------AATT----------------------------------TCG-ATGTATTTAAAA--------------------------------------------------------------------------------------ATA-----------------------------------------TAAATTAAATAGAAAACT---------------CAT-TTATGAA------------AATG---------TA---------A--------AA-------------A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................TAGATACTACCCTGAACCCAA---------------------------CTA.........................................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	5	0	0	0	0	0
......................................................................................................................................................................................................TCTAGTCGAGAGTGCTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	2	0
...............................................................................................................................................................................................GAA-AACTCTAGTCGAGAGTGCTCGAC............................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................AAAATGC------CCATTTACTATGGC...........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................A---------------------------AAACAAGT-AAGAA-AACTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................ATGGCT-AAAATT-------TC---------AATT----------------------------------TCG-ATGT...................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................TGCTCGACTAGATACTACCCT...............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................CTAGATACTACCCTGAACCCA........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................TAGATACTACCCTGAACCCAA---------------------------CTAA........................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................GCTCGACTAGATACTACCCTG..............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................TGCTCGACTAGATACTACC.................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0

droGri2

CA-------------------------TAGT-----------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGT-AGGAA-AGCTGCAGGCGAGTGAGCTCAACTACGAGATACCCTGCAGCCAG---------------------------GTATTAAATATAA----------------TATTC-------AAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGACAATGAAAATACGATTA-------CGACTTCATTTAAA------------AT-----------TG---------GGCGTTTCTGATTCG---------T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

der_1316

scaffold_4929:14891949-14892099 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads