ID:

der_1309

 Coordinate:

scaffold_4929:13473510-13473660 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dere\GG23745-cds]; exon [dere_GLEANR_8539:2]; intron [Dere\GG23745-in]

Repeatable elements

NameClassFamilyStrand
Hoyak2DNAhAT-Ac+
DNAREP1_DMRCHelitron-
DNAREP1_DMRCHelitron-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTAACAGGCAGAAGGAAACGTTTCCGACCATATAAAGTATTTATATATTTAAATTTTTTCCCTAATTTCTACCGATATTCCAGAAAATGTTGAAATTTCCCTTGTGCACGTCCCCTAGCTGAGTAATATGTATCTGATAGTCGGGGAACTCGACTATAGCTTTCCAACTTGTTTTATATTATATTAAATATTTTTTACAGAATAGTGGAGCTACTGCGCAACACCATGAACATTTCGCAGCTCGGCCAGT
**************************************************................................((((((((((..............(((.((.....((((................(((((((((...))))))))))))).....)).)))..............))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M055
female body
 M057
embryo
 V108
head
.............................................................................................................................................................................................................................ACAGTATGAACATTTCGCAGC......... 21 2 1 1.00 1 1 0 0
...........................................................................................................................................................................................ACTATTTTTGACAGATTAGTG........................................... 21 3 6 0.50 3 3 0 0
........................................................................................TGTTGAAATGTCCGTTGAGC............................................................................................................................................... 20 3 7 0.14 1 0 1 0
...........GAAGGAAACGTTTCCGACC............................................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 1

Anti-sense strand reads

TAATTGTCCGTCTTCCTTTGCAAAGGCTGGTATATTTCATAAATATATAAATTTAAAAAAGGGATTAAAGATGGCTATAAGGTCTTTTACAACTTTAAAGGGAACACGTGCAGGGGATCGACTCATTATACATAGACTATCAGCCCCTTGAGCTGATATCGAAAGGTTGAACAAAATATAATATAATTTATAAAAAATGTCTTATCACCTCGATGACGCGTTGTGGTACTTGTAAAGCGTCGAGCCGGTCA
**************************************************................................((((((((((..............(((.((.....((((................(((((((((...))))))))))))).....)).)))..............))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V040
embryo
 M055
female body
...............................................................................................................................................CCCCTTGAGCTGATATCGA......................................................................................... 19 0 8 0.13 1 1 0
....TGTCCGTCTTCCTTTGCAAA................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 1
.....GTCCGTCTTCCTTTGCAAAGGCTGGTATA......................................................................................................................................................................................................................... 29 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4929:13473460-13473710 - der_1309 ATTAACAGGCAGAAGGAAACGTTTCCGACC----ATATAAAGTATT----------TA-----TATATT----------------------------------------TAAATTTT--------------------------------------------------------------------------------------------------TTCCCTAATTTCTACCG----ATATTCCAGAAA-A--T-------------------------------GTTGAAA----------------TTTCCCTTGTGCACGTCCCCTAGCTGAGTA-ATATGTATCTGATAGTCGGGGAA----CTCGACTATAGCTTTCCAACTTGTTT----------------------------------------------------------TATATTATATTAAATATT-TTTTAC----------------------------AGAATAG---------------TGG-A------GCTACTGCGCAACACCATGAAC-----ATTTCGCAGCTCGGCCAGT
droYak3 2L:17119011-17119248 - CA-----AACAAAAACTAAACTATCTAATC----TTATAGAAAATT----------TC-----AATATTTTTTTTACATTATGTTATTTTTT-----------------T------------------------------------------------------------------------------------------------------------CC-AATTTCTACCG----ATATTCCAGAAA-A------------------------------------TACAA----------------TTTCTTGTTTTCAATTTTACCAGATGAGTA-ACGGGTATCTAAAAGTCGGGGAA----CTCGACTGTAGCATTCTCTTTTGTTAATAACTAATTATTTTTTGAATTTTAAACTTAT-------------------------------------------T-TTCTGCAGAGTGTT-----------------------------------------------------TCTTCCGCG------------------C----------------AA
droSec2 scaffold_72:6598-6854 + ACAAACCGACCAAAA----CTCCCACGCCC----ACAT-------TTTTGAAAATTT--------TT------------------------------------------TGGATATTTTTTCATAATT--------------------------------AT--------------------------------------------------TTATTCCCGAATATCTATCG----ATATCCCAGAAAAA--TGA-------------------------------TGAAA----------------TATCGCATTAGCATTCACACTAGCTGAGTA-ACAGGTATCTGATAGTCGGGGAA----CTCGACTATAGCATTCTCTCTTGTTGGT----GC------------------------------------------------TAAATACTGCC-------AT-TCACACGG---------------GCCA-TAACAGGACA--CTGCGACCCATAGTTTTGCGATTT-----------------------------------------CTGCCGGT
droSim2 3r:9549095-9549328 + TGTAACAGGCAGAAGAAAGAATCCAGGGATCTTGCCAAAAAATGTT----------TT-----AATTATTT-----------------------GTTTTTAG-------CTTTATT----T-------ATTTATATTAATAGAATCTTAAGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------TCATTCAGCCACTCCCAGAAGCTTAGTA-ACGGGTATCTGATAGTCGAGGAA----CGCGACTGTAGCGTTCTCTCTTGTATGT----AT------------------------------------------------TTT--------TTATAGATT-TCCTACGG---------------GCAA-----ATGGCA--TTGTGA--------------------------------CCACTCTTTAT-----ATTTCGC-----------A
dm3 chrU:1231459-1231703 + TGTAACAGTCAGAAGGAAGCATTTCCGT---------------ATA----------TA-TATATATT------------------------------------------CTTGAT--------------------------------------CAGGATCAATAGCCGAGTCGATTGATC--------------------------------------CC-AACATCTAACG----GTATCCAAGAAAAA--TTA-------------------------------TGAAA----------------TTTCTCATTCGCATTTACACAAGCTAAGTA-ACGGGTATCTGATAGTCA-GGAA----CTCGAATATAGCATTCTCTATTTTTTCT----AT------------------------------------------------TAT---------------TT-TCCTACAGCATGGTTAAAAGTTCCCAA-----GCGGCA--T---------------TAGAATTT-----------------------------------------TTGAC-AG
droEug1 scf7180000408358:10020-10228 + TGTAACAGGTAGAAG-ATGCGTTTCCGACT----CTATAATGTATA----------TA-----TATAAAAG-----------------------CAAGAAAGTTGAAATTCAGTATCTAAATT----C--------------------------------TT--TCGGA----------CCCAGCGCCTTTTA--------T-GGTGATTAA--------------------TTGT------------------------------------------------GTT------------------------------------------AAACAGTA-ACAGGTATCGTATAGTCCTGTCA----CTCGACTGTAGCGTTGTTTCTTGTAT-------------------------------------------------------------ATTTTTGTAGCCGTT-TCTCGC----------------------------AGAG---------------------------------------------------AAAAA-----------G-----AG
droBia1 scf7180000299806:48562-48756 - -GTAACAGATAGAAAAAAATTTT---------------AACAGATA----------TA-----TATT---------------------------------TG-------TCTCATC----A-------ATTCC--------------TATCGATTGACTCA--------ATCGATT-------------------------------------------------------------------------------------------------------------------------------------TCTATTTGG--CTCCCTCAAGCTGAGTA-ACGGGTATCTGATAGTCGAGGCA----CTCGACTATAGCGTTTTTTTTTGTGCA-ACGTAATTTTTGTGTGAA------------------------------------------CCGCC-------ATCCAATACAGAGTGGC-----------------------------------------------------------------------TCAC-----A----------------GC
droTak1 scf7180000414109:7665-7904 + AGTGACAGGTAGAAGGAAGCGTTTCCGACC----CCATAAAGTATA----------TA-----TATAAATTTTTCAAATAGGACCATTCGTTAAAAAGTTAT---------------------------------------------------------------GCGCA--------------------------------------------------------------------------------AT---------------------------------------CAAAGTTTTATATATTTATCTCCCTCGCACTCCCTTTAGCTGAGTA-ACGGGTATCTGTTAGTTGGGGCACCCACCCGACTATAGAGTTCTCTCTTGTTA-----------------------------------------TACAG---------------------TCAGA-----------------------AGTTTGCAAC----GCAGTG--A---------------AGG-A------GACGTTTC-CGACC----CCAT-----A----------------AA
droEle1 scf7180000491104:924883-925046 + TGTAACAGGTAGAAGGAATCGTTTCCGAGT----CCATAAAGTATA----------TA-----TATT------------------------------------------CTAAACTTC-----------------------------GATGGTTTTGTAGGGGAAATA-------------------------------------------C--------------------TTAG------------------------------------------------GTTGAAG-------------------------------TTTGTTGGCTGAGTA-ACGGGTATCTAATAGTCGGGGAA----CTCGACTATAGCGTTCTTTCTTGTTT-------------------------------------------------------------T--------------------------------------------------------------------------------------------------CTTTAT-----AC----------------T
droRho1 scf7180000771332:13181-13374 - TGTAACAGGTAGAAGGAAGCGTTTCCGACC----CTATAAAGTATA----------TA-----TATT------------------------------------------CTTGTT--------------------------------------CAGGATCACTAGCCGAGTCGATC----------TA---GCCATGTCCGTG-----------------------------------------------AT---------------------------------------CAAAGTTT-CTATCTCCATCTCCCTCGCACTCCCTTTACCTGAGTA-ACGGGTATCTGATAGTCGGGGCA----CCCGACTATAGCGTTCTCTCTTGTTT-------------------------------------------------------------T-----------------------------------------------------------------------------------------------------GTT-----TT----------------A
droFic1 scf7180000453842:426482-426682 - TGTAACAGGTTGAAGAAAGCACTTGCGACC----CCAGAAAGTATA----------TAGTATATAAT------------------------------------------CCTGAT--------------------------------------CAGGATCATCAGACGAGTCGACT----------TA---TA--------------------------------------------------AGTAT-A--A-------------------------------GTTGCCA----------------CACCT-TTTGG--CAACGTTTAACTAAGTA-ACCAGTATCTAATAGTCGAAGCT----CTCGACTGTTGCTTTTCTTT---ATT---------------------------------------------G------------TTTTAA---TTAGC-----------------------A-----------------------------------------ATTTCTG----------------------TCACAA----------------AA
droKik1 scf7180000301476:623108-623198 - TTTCTAAGTTGAGCTTAATTA-----------------------TA----------TA-----AAAA--------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-TTTTTC----------------------------AGAATCG---------------TTG-A------GCTGCTACGCCTCACCATGAAC-----CTGTCCCAGCTGGGTCAGT
droAna3 scaffold_12943:2310993-2311093 - ATAGCT---------------------------------------------------------------------------------------------------------TTTTT----T-------TTTAATATTAA-------------------------------------------------------------------------------------------------------------AA--ATA-------------------------------TGAAA----------------CTTT-------------------------------------------------------------------TCCTCTCTT------------------------------------------------------------------------------------TCA----------------------------AGAATTA---------------TCG-A------CTTACTGCGCAGCACCATGAAC-----ATATCGCAACTGGGCCAGT
droBip1 scf7180000396426:362187-362371 + AC---------------------------C----CTATGGAAAATT----------TG-----AATT------------------------------------------TAAATATCTTTTTTCGTTT--------------------------------TT--TAGAAAACGAAA----------AC---T--------------------------------------------TTGGCCAGAAAAAA--CGATCAAATTTTCTATAGTGCA---------------------------------TAC--------CTTTAAACCTTACCGAGTA-CCGTGTATAAAATAGTCGGGGAA----CTCGAATATAGCCGTTCTTT------------------------------------CT--------------AA---TTTATTGTGTATTGTAATAAAC--------------------------------------------------------------------------------------------------------------------A
dp5 XL_group1a:1397942-1398091 + TGTAGCGGCCAAAAGGAATCGTTTCCTACC----CCATAAAGTGTG----------TG-----TATT------------------------------------------TTGGTTTCC-----------------------------TATAAACTGGTTCACCGGATGAGCTGGAT----------AT---CGCATGTGCATG-----------------------------------------------TACTAT------GTATTTGATTGCAA-----------------------------------------------------------------------------AC--GGGA----CCCGTT-----------------------------------------------------TCC----------TCCTT----------T--------------------------------------------------------------------------------------------------ACTTAT-----AT----------------T
droPer2 scaffold_53:405303-405451 - TGTAACGGCCAAAAGGAATCGTTTCCTACC----CCATAAAGTGTG----------TG-----TATT------------------------------------------TTGGTTTCC-----------------------------TATAAACTGGTTCACCGGATGAGCTGGAT----------AT---CGCATGTGCA------------------------------------------------------------------------------------------------------------------------------------TGTA-CTATGTATTTGATTGCAGTTGGT----CCCGTT-----------------------------------------------------TCC----------TCCTT----------T--------------------------------------------------------------------------------------------------ACTTAT-----AT----------------T
droWil2 scf2_1100000004585:8275558-8275745 - TGTAACAGGCAGAAGGAAGCTTCTCAGACC----CCAAAAAGTATA----------TA-----TGTAATTT-----------------------GATGATAA---------------------------------------------------------------CCGAAATGATG----------TT---TATATGTGTT----------------------------------------------------------------------------------------------------------TAT-------AA-ATGTCATATGATGTTTATAAATGTATATAATTTTTGTGGTA----TATGAA----------------------------------------CTACAGGTCTGTTTTTTGCTGTACAG------------TATATTCA---AGT-----------------------A-----------------------------------------TCTATCG----------------------AAATA-----------G-----TG
droVir3 scaffold_12855:852386-852525 + TGTAACAGGCACAAGGAAGCATCTCCGACC----CCATAAAGTATA----------TA-----TATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGCCGAGTCGATC----------TA---GCCATCTCCGT----------------------------------------------------------------------------------------------------------CT---GTCTGTCCGTCCGTCCGTTCATCC-GTATGTATGCAAGGATCGAAGAA----C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:13182978-13183164 - TGTAGCAGGCAGAAGGAGGCGTAGCAGACC----CCACAAAGTATA----------TA-----TATT------------------------------------------CTTGATTTCTCAAATATTC--------------------------------AA--TATAATATGTAG----------AT---C--------------------------------------------ATATGCTGAAAGTT--TCATAAAATTCCGTTTAGTCAAAAACTGCAAC-------TGATGTTA-ATTTCATTAA---------------------------------------------------------------------TTGTTT------------------------------------CA--------------AA---ATTTTTTTATATTTTCATAAATGAG-TTT-------------------------------------------------------------------------------------------------------------T
droGri2 scaffold_14906:13424631-13424746 + TGTATCAGGCAGAAGGAAGTATCTTCGACC----TCATAAAGTATA----------TG-----TTTT------------------------------------------CTCGATCTT-----------------------------TGCATATTCCTCAGTCAAATA-------------------------------------------GTTATTCTCTTA---------------------------------------------------------------------------------------------------------------TTT-CCAAATTT----------------------------------------------------------------------------------------------------------------------------TTAAAGAATG-------------------------------------------------------------------------------------TTG-----------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
ATTAACAGGCAGAAGGAAACGTTTCCGACC----ATATAAAGTATT----------TA-----TATATT----------------------------------------TAAATTTT--------------------------------------------------------------------------------------------------TTCCCTAATTTCTACCG----ATATTCCAGAAA-A--T-------------------------------GTTGAAA----------------TTTCCCTTGTGCACGTCCCCTAGCTGAGTA-ATATGTATCTGATAGTCGGGGAA----CTCGACTATAGCTTTCCAACTTGTTT----------------------------------------------------------TATATTATATTAAATATT-TTTTAC----------------------------AGAATAG---------------TGG-A------GCTACTGCGCAACACCATGAAC-----ATTTCGCAGCTCGGCCAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........GAAGGAAACGTTTCCGACC----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
droYak3
CA-----AACAAAAACTAAACTATCTAATC----TTATAGAAAATT----------TC-----AATATTTTTTTTACATTATGTTATTTTTT-----------------T------------------------------------------------------------------------------------------------------------CC-AATTTCTACCG----ATATTCCAGAAA-A------------------------------------TACAA----------------TTTCTTGTTTTCAATTTTACCAGATGAGTA-ACGGGTATCTAAAAGTCGGGGAA----CTCGACTGTAGCATTCTCTTTTGTTAATAACTAATTATTTTTTGAATTTTAAACTTAT-------------------------------------------T-TTCTGCAGAGTGTT-----------------------------------------------------TCTTCCGCG------------------C----------------AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................GGGGAA----CTCGACTGTAGCATTCTC......................................................................................................................................................................................................2420.50110000000000
........................................................................................................................................................................................................................................................................................................................................AGATGAGTA-ACGGGTATCT.........................................................................................................................................................................................................................................1960.17100000010000
droSec2
ACAAACCGACCAAAA----CTCCCACGCCC----ACAT-------TTTTGAAAATTT--------TT------------------------------------------TGGATATTTTTTCATAATT--------------------------------AT--------------------------------------------------TTATTCCCGAATATCTATCG----ATATCCCAGAAAAA--TGA-------------------------------TGAAA----------------TATCGCATTAGCATTCACACTAGCTGAGTA-ACAGGTATCTGATAGTCGGGGAA----CTCGACTATAGCATTCTCTCTTGTTGGT----GC------------------------------------------------TAAATACTGCC-------AT-TCACACGG---------------GCCA-TAACAGGACA--CTGCGACCCATAGTTTTGCGATTT-----------------------------------------CTGCCGGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACACGG---------------GCCA-TAACAGGACA--CTGCGA...................................................................2820.5010100
................................................................................................................................................................................................................................................................................................................................TTCACACTAGCTGAGTA-ACAGGTA............................................................................................................................................................................................................................................2480.1311000
................................................................................................................................................................................................................................................................................................................................TTCACACTAGCTGAGTA-ACAGGTAT...........................................................................................................................................................................................................................................2580.1311000
.............................................................................................................................................................................................................................................................................................................................................................................CTCGACTATAGCATTCTCTCTTGTT...............................................................................................................................................................................................25200.0511000
..................................................................................................................................................................................................................................................................................................................................................................CGGGGAA----CTCGACTATAGCATT.........................................................................................................................................................................................................22200.0511000
........................................................................................................................................................................................................................................................................................................................................................ATCTGATAGTCGGGGAA----CTCGA...................................................................................................................................................................................................................22200.0510100
droSim2
TGTAACAGGCAGAAGAAAGAATCCAGGGATCTTGCCAAAAAATGTT----------TT-----AATTATTT-----------------------GTTTTTAG-------CTTTATT----T-------ATTTATATTAATAGAATCTTAAGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------TCATTCAGCCACTCCCAGAAGCTTAGTA-ACGGGTATCTGATAGTCGAGGAA----CGCGACTGTAGCGTTCTCTCTTGTATGT----AT------------------------------------------------TTT--------TTATAGATT-TCCTACGG---------------GCAA-----ATGGCA--TTGTGA--------------------------------CCACTCTTTAT-----ATTTCGC-----------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................TAGTCGAGGAA----CGCGACTGTAGC............................................................................................................................................................................................................2311.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................TTAGTA-ACGGGTATCTGATAGT...................................................................................................................................................................................................................................2240.25100000000100000000
....................................................................................................................................................................................................................................................................................................................................................GGGTATCTGATAGTCGAGGAA----C.......................................................................................................................................................................................................................22200.20400000004000000000
..............................................................................................................................................................................................................................................................................................................................................GTA-ACGGGTATCTGATAGTCGAGGAA----C.......................................................................................................................................................................................................................2780.13101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GGTATCTGATAGTCGAGGAA----C.......................................................................................................................................................................................................................21200.10200000020000000000
.GTAACAGGCAGAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000000002000000
..TAACAGGCAGAAGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.10200000000002000000
...............................................................................................................................................................................................................................................................................................................................................TA-ACGGGTATCTGATAGTCGAGGAA----C.......................................................................................................................................................................................................................26110.09100000000001000000
...................................................................................................................................................................................................................................................................................................................................................CGGGTATCTGATAGTCGAGGAA----........................................................................................................................................................................................................................22200.05100000000000010000
.............................................................................................................................................................................................................................................................................................................................................AGTA-ACGGGTATCTGATAGTCG.................................................................................................................................................................................................................................22200.05100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................GGTATCTGATAGTCGAGG..............................................................................................................................................................................................................................18200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................TA-ACGGGTATCTGATAG....................................................................................................................................................................................................................................17200.05100000001000000000
................................................................................................................................................................................................................................................................................................................................................A-ACGGGTATCTGATAGTCGAG...............................................................................................................................................................................................................................21200.05100000000100000000
.............................................................................................................................................................................................................................................................................................................................................AGTA-ACGGGTATCTGATAGTCGAGG..............................................................................................................................................................................................................................25200.05100100000000000000
...............................................................................................................................................................................................................................................................................................................................................TA-ACGGGTATCTGATAGTCGAGGA.............................................................................................................................................................................................................................24200.05100000000100000000
.GTAACAGGCAGAAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
....ACAGGCAGAAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................A-ACGGGTATCTGATAGTCGA................................................................................................................................................................................................................................20200.05100000000001000000
dm3
TGTAACAGTCAGAAGGAAGCATTTCCGT---------------ATA----------TA-TATATATT------------------------------------------CTTGAT--------------------------------------CAGGATCAATAGCCGAGTCGATTGATC--------------------------------------CC-AACATCTAACG----GTATCCAAGAAAAA--TTA-------------------------------TGAAA----------------TTTCTCATTCGCATTTACACAAGCTAAGTA-ACGGGTATCTGATAGTCA-GGAA----CTCGAATATAGCATTCTCTATTTTTTCT----AT------------------------------------------------TAT---------------TT-TCCTACAGCATGGTTAAAAGTTCCCAA-----GCGGCA--T---------------TAGAATTT-----------------------------------------TTGAC-AGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...............................................................................................................TGAT--------------------------------------CAGGATCAATAGCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CTTGAT--------------------------------------CAGGATCAATAGCCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................24200.2040000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................AGTA-ACGGGTATCTGATAGTCA-................................................................................................................................................................................................................................22150.2030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000
........................................................TA-TATATATT------------------------------------------CTTGAT--------------------------------------CAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020
...............................................................TATT------------------------------------------CTTGAT--------------------------------------CAGGATCAATAGCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................27200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................AT--------------------------------------CAGGATCAATAGCCGAGTCGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................25150.2030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................AT--------------------------------------CAGGATCAATAGCCGAGTCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ATT------------------------------------------CTTGAT--------------------------------------CAGGATCAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................CTTGAT--------------------------------------CAGGATCAATAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................AGTA-ACGGGTATCTGATAGTC..................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.................................................................TT------------------------------------------CTTGAT--------------------------------------CAGGATCAATAGCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................24200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................GAT--------------------------------------CAGGATCAATAGCCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AGGATCAATAGCCGAGTCGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................22160.1930000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..TAACAGTCAGAAGGAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TA-TATATATT------------------------------------------CTTGAT--------------------------------------CAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TT------------------------------------------CTTGAT--------------------------------------CAGGATCAATAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000101000000000000000000000000
...............................................................TATT------------------------------------------CTTGAT--------------------------------------CAGGATCAATAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................AT--------------------------------------CAGGATCAATAGCCGAGTCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................A-TATATATT------------------------------------------CTTGAT--------------------------------------CAGGATCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ATT------------------------------------------CTTGAT--------------------------------------CAGGATCAATAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TT------------------------------------------CTTGAT--------------------------------------CAGGATCAATAGCCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................AGGATCAATAGCCGAGTCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
........................................................TA-TATATATT------------------------------------------CTTGAT--------------------------------------CAGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AGCTAAGTA-ACGGGTATCTGA.......................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000001000000000000000000000000000000000
.............................................................TATATT------------------------------------------CTTGAT--------------------------------------CAGGATCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................TATATT------------------------------------------CTTGAT--------------------------------------CAGGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AA----CTCGAATATAGCATTCTCT.....................................................................................................................................................................................................21150.1320000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GTA-ACGGGTATCTGATAGTCA-................................................................................................................................................................................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................ACGGGTATCTGATAGTCA-GG..............................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
TGTAACAGGTAGAAG-ATGCGTTTCCGACT----CTATAATGTATA----------TA-----TATAAAAG-----------------------CAAGAAAGTTGAAATTCAGTATCTAAATT----C--------------------------------TT--TCGGA----------CCCAGCGCCTTTTA--------T-GGTGATTAA--------------------TTGT------------------------------------------------GTT------------------------------------------AAACAGTA-ACAGGTATCGTATAGTCCTGTCA----CTCGACTGTAGCGTTGTTTCTTGTAT-------------------------------------------------------------ATTTTTGTAGCCGTT-TCTCGC----------------------------AGAG---------------------------------------------------AAAAA-----------G-----AGSizeHit CountTotal NormTotal
No Reads
droBia1
-GTAACAGATAGAAAAAAATTTT---------------AACAGATA----------TA-----TATT---------------------------------TG-------TCTCATC----A-------ATTCC--------------TATCGATTGACTCA--------ATCGATT-------------------------------------------------------------------------------------------------------------------------------------TCTATTTGG--CTCCCTCAAGCTGAGTA-ACGGGTATCTGATAGTCGAGGCA----CTCGACTATAGCGTTTTTTTTTGTGCA-ACGTAATTTTTGTGTGAA------------------------------------------CCGCC-------ATCCAATACAGAGTGGC-----------------------------------------------------------------------TCAC-----A----------------GCSizeHit CountTotal NormTotal
No Reads
droTak1
AGTGACAGGTAGAAGGAAGCGTTTCCGACC----CCATAAAGTATA----------TA-----TATAAATTTTTCAAATAGGACCATTCGTTAAAAAGTTAT---------------------------------------------------------------GCGCA--------------------------------------------------------------------------------AT---------------------------------------CAAAGTTTTATATATTTATCTCCCTCGCACTCCCTTTAGCTGAGTA-ACGGGTATCTGTTAGTTGGGGCACCCACCCGACTATAGAGTTCTCTCTTGTTA-----------------------------------------TACAG---------------------TCAGA-----------------------AGTTTGCAAC----GCAGTG--A---------------AGG-A------GACGTTTC-CGACC----CCAT-----A----------------AASizeHit CountTotal NormTotal
No Reads
droEle1
TGTAACAGGTAGAAGGAATCGTTTCCGAGT----CCATAAAGTATA----------TA-----TATT------------------------------------------CTAAACTTC-----------------------------GATGGTTTTGTAGGGGAAATA-------------------------------------------C--------------------TTAG------------------------------------------------GTTGAAG-------------------------------TTTGTTGGCTGAGTA-ACGGGTATCTAATAGTCGGGGAA----CTCGACTATAGCGTTCTTTCTTGTTT-------------------------------------------------------------T--------------------------------------------------------------------------------------------------CTTTAT-----AC----------------TSizeHit CountTotal NormTotal
No Reads
droRho1
TGTAACAGGTAGAAGGAAGCGTTTCCGACC----CTATAAAGTATA----------TA-----TATT------------------------------------------CTTGTT--------------------------------------CAGGATCACTAGCCGAGTCGATC----------TA---GCCATGTCCGTG-----------------------------------------------AT---------------------------------------CAAAGTTT-CTATCTCCATCTCCCTCGCACTCCCTTTACCTGAGTA-ACGGGTATCTGATAGTCGGGGCA----CCCGACTATAGCGTTCTCTCTTGTTT-------------------------------------------------------------T-----------------------------------------------------------------------------------------------------GTT-----TT----------------ASizeHit CountTotal NormTotal
No Reads
droFic1
TGTAACAGGTTGAAGAAAGCACTTGCGACC----CCAGAAAGTATA----------TAGTATATAAT------------------------------------------CCTGAT--------------------------------------CAGGATCATCAGACGAGTCGACT----------TA---TA--------------------------------------------------AGTAT-A--A-------------------------------GTTGCCA----------------CACCT-TTTGG--CAACGTTTAACTAAGTA-ACCAGTATCTAATAGTCGAAGCT----CTCGACTGTTGCTTTTCTTT---ATT---------------------------------------------G------------TTTTAA---TTAGC-----------------------A-----------------------------------------ATTTCTG----------------------TCACAA----------------AASizeHit CountTotal NormTotal
No Reads
droKik1
TTTCTAAGTTGAGCTTAATTA-----------------------TA----------TA-----AAAA--------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-TTTTTC----------------------------AGAATCG---------------TTG-A------GCTGCTACGCCTCACCATGAAC-----CTGTCCCAGCTGGGTCAGTSizeHit CountTotal NormTotal
No Reads
droAna3
ATAGCT---------------------------------------------------------------------------------------------------------TTTTT----T-------TTTAATATTAA-------------------------------------------------------------------------------------------------------------AA--ATA-------------------------------TGAAA----------------CTTT-------------------------------------------------------------------TCCTCTCTT------------------------------------------------------------------------------------TCA----------------------------AGAATTA---------------TCG-A------CTTACTGCGCAGCACCATGAAC-----ATATCGCAACTGGGCCAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AC---------------------------C----CTATGGAAAATT----------TG-----AATT------------------------------------------TAAATATCTTTTTTCGTTT--------------------------------TT--TAGAAAACGAAA----------AC---T--------------------------------------------TTGGCCAGAAAAAA--CGATCAAATTTTCTATAGTGCA---------------------------------TAC--------CTTTAAACCTTACCGAGTA-CCGTGTATAAAATAGTCGGGGAA----CTCGAATATAGCCGTTCTTT------------------------------------CT--------------AA---TTTATTGTGTATTGTAATAAAC--------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dp5
TGTAGCGGCCAAAAGGAATCGTTTCCTACC----CCATAAAGTGTG----------TG-----TATT------------------------------------------TTGGTTTCC-----------------------------TATAAACTGGTTCACCGGATGAGCTGGAT----------AT---CGCATGTGCATG-----------------------------------------------TACTAT------GTATTTGATTGCAA-----------------------------------------------------------------------------AC--GGGA----CCCGTT-----------------------------------------------------TCC----------TCCTT----------T--------------------------------------------------------------------------------------------------ACTTAT-----AT----------------TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........AAAGGAATCGTTTCCTACC----CCATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010100000000
.............AGGAATCGTTTCCTACC----CCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510100000000
droPer2
TGTAACGGCCAAAAGGAATCGTTTCCTACC----CCATAAAGTGTG----------TG-----TATT------------------------------------------TTGGTTTCC-----------------------------TATAAACTGGTTCACCGGATGAGCTGGAT----------AT---CGCATGTGCA------------------------------------------------------------------------------------------------------------------------------------TGTA-CTATGTATTTGATTGCAGTTGGT----CCCGTT-----------------------------------------------------TCC----------TCCTT----------T--------------------------------------------------------------------------------------------------ACTTAT-----AT----------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGTAACAGGCAGAAGGAAGCTTCTCAGACC----CCAAAAAGTATA----------TA-----TGTAATTT-----------------------GATGATAA---------------------------------------------------------------CCGAAATGATG----------TT---TATATGTGTT----------------------------------------------------------------------------------------------------------TAT-------AA-ATGTCATATGATGTTTATAAATGTATATAATTTTTGTGGTA----TATGAA----------------------------------------CTACAGGTCTGTTTTTTGCTGTACAG------------TATATTCA---AGT-----------------------A-----------------------------------------TCTATCG----------------------AAATA-----------G-----TGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................TAATTT-----------------------GATGATAA---------------------------------------------------------------CCGAAATGATG----------T..........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
TGTAACAGGCAGAAGGAAGCTTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200020
droVir3
TGTAACAGGCACAAGGAAGCATCTCCGACC----CCATAAAGTATA----------TA-----TATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGCCGAGTCGATC----------TA---GCCATCTCCGT----------------------------------------------------------------------------------------------------------CT---GTCTGTCCGTCCGTCCGTTCATCC-GTATGTATGCAAGGATCGAAGAA----C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................A-----TATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................24200.85170000000000000000000020001500000000000000000000000000000000000000
........................................................TA-----TATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................27200.357000000000000000000000000000070000000000000000000000000000000000
.........................................................A-----TATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................27200.204000000000000000000000000000000040000000000000000000000000000000
....ACAGGCACAAGGAAGCATCTCCGACC----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.201000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................TTGATC--------------------------------------AGCATCAATAGCCGAGTCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................26200.153000000000000000000001000000020000000000000000000000000000000000
..............................................................................................................TTGATC--------------------------------------AGCATCAATAGCCGAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................24200.153002000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................CAATAGCCGAGTCGATC----------TA---GCCATC................................................................................................................................................................................................................................................................................................................................................................................................2570.141000000000000000000000000000000000000000000000000000000000000010
..TAACAGGCACAAGGAAGCATCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2370.141000000000000000000000000000000100000000000000000000000000000000
...............................................................TATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000020000000000000000000000000000000000000000000000000000000000
...........................................ATA----------TA-----TATT------------------------------------------CTTGATC--------------------------------------AGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000000020000000000000000000000000000000000
..............................................................................................................TTGATC--------------------------------------AGCATCAATAGCCGAGTCGATC----------...........................................................................................................................................................................................................................................................................................................................................................................................................28200.102000000000000000000000000020000000000000000000000000000000000000
................................................................................................................GATC--------------------------------------AGCATCAATAGCCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000200000000000000000000000000000000000000000000000000000000
..................................................................................................................TC--------------------------------------AGCATCAATAGCCGAGTCGATC----------TA---G.....................................................................................................................................................................................................................................................................................................................................................................................................27200.102000000000000000000000000000020000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TCTGTCCGTCCGTCCGTT.........................................................................................................................................................................................................................................................18200.102000000020000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------CT---GTCTGTCCGTCCGTCCGT..........................................................................................................................................................................................................................................................21200.102000000000000000000000000000020000000000000000000000000000000000
.............AGGAAGCATCTCCGACC----CC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TAGCCGAGTCGATC----------TA---GCCAT.................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................TCAATAGCCGAGTCGATC----------TA---G.....................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................CGT----------------------------------------------------------------------------------------------------------CT---GTCTGTCCGTCCGTCC............................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
........................................................TA-----TATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000000010000000000000000000000000000000
.................................................................TT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000001000000000000000000000000000000000000000000000000000000
.........................................GTATA----------TA-----TATT------------------------------------------CTTGATC--------------------------------------AGCATCA....................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
................................................................ATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000001000000000000000000000000000000000000000
.........................................................A-----TATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
............................................TA----------TA-----TATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................T---GTCTGTCCGTCCGTCCGT..........................................................................................................................................................................................................................................................19200.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................C--------------------------------------AGCATCAATAGCCGAGTCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................GCATCAATAGCCGAGTCGATC----------T..........................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................ATAGCCGAGTCGATC----------TA---GCCA..................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
........................................................TA-----TATT------------------------------------------CTTGATC--------------------------------------AGCATCAATAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000001000000000000000000000000000000000000000000
....................................ATAAAGTATA----------TA-----TATT------------------------------------------CTTGATC--------------------------------------AGC........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................TCAATAGCCGAGTCGATC----------TA---GCCAT.................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
................................................................................................................GATC--------------------------------------AGCATCAATAGCCGAGTCGATC----------...........................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000001000000000000000000000000000
..................................................................T------------------------------------------CTTGATC--------------------------------------AGCATCAATAGCCGAGTCG........................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000010000000000000000000000000
...................................CATAAAGTATA----------TA-----TATT------------------------------------------CTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
........................................AGTATA----------TA-----TATT------------------------------------------CTTGATC--------------------------------------AGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000100000000000000000000000000000
................................................................................................................GATC--------------------------------------AGCATCAATAGCCGAGTCG........................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
droMoj3
TGTAGCAGGCAGAAGGAGGCGTAGCAGACC----CCACAAAGTATA----------TA-----TATT------------------------------------------CTTGATTTCTCAAATATTC--------------------------------AA--TATAATATGTAG----------AT---C--------------------------------------------ATATGCTGAAAGTT--TCATAAAATTCCGTTTAGTCAAAAACTGCAAC-------TGATGTTA-ATTTCATTAA---------------------------------------------------------------------TTGTTT------------------------------------CA--------------AA---ATTTTTTTATATTTTCATAAATGAG-TTT-------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................TAG----------AT---C--------------------------------------------ATATGCTGAAAGTT--TCATAAAA.................................................................................................................................................................................................................................................................................................................................2820.501100000
.............................................................................................................................................................................TAG----------AT---C--------------------------------------------ATATGCTGAAAGTT--TCATA....................................................................................................................................................................................................................................................................................................................................2520.501010000
...............................................................................................................................................................................................C--------------------------------------------ATATGCTGAAAGTT--TCATA....................................................................................................................................................................................................................................................................................................................................2030.331100000
..............................................................................................................................................................................................................................................ATGCTGAAAGTT--TCATAAAATTCCG............................................................................................................................................................................................................................................................................................................................2550.201100000
.....................................................................................................................................................................ATAATATGTAG----------AT---C--------------------------------------------ATATGCTGAAAGT............................................................................................................................................................................................................................................................................................................................................27200.204400000
..............................................................................................................................................................................................................................................ATGCTGAAAGTT--TCATAAAATTCCGT...........................................................................................................................................................................................................................................................................................................................2650.201100000
.........CAGAAGGAGGCGTAGCAGACC----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
..............................................................................................................................TC--------------------------------AA--TATAATATGTAG----------AT---C--------------------------------------------ATATG....................................................................................................................................................................................................................................................................................................................................................24200.102200000
.GTAGCAGGCAGAAGGAGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
TGTAGCAGGCAGAAGGAGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
...........................................................................................................................................................................TGTAG----------AT---C--------------------------------------------ATATGCTGAAAGTT--TC.......................................................................................................................................................................................................................................................................................................................................24200.051100000
...............................................................................................................................................................................G----------AT---C--------------------------------------------ATATGCTGAAAGTT--T........................................................................................................................................................................................................................................................................................................................................19200.051100000
.......GGCAGAAGGAGGCGTAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droGri2
TGTATCAGGCAGAAGGAAGTATCTTCGACC----TCATAAAGTATA----------TG-----TTTT------------------------------------------CTCGATCTT-----------------------------TGCATATTCCTCAGTCAAATA-------------------------------------------GTTATTCTCTTA---------------------------------------------------------------------------------------------------------------TTT-CCAAATTT----------------------------------------------------------------------------------------------------------------------------TTAAAGAATG-------------------------------------------------------------------------------------TTG-----------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:48 PM