ID:

der_1241

 Coordinate:

scaffold_4929:1057216-1057366 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.0

Flybase annnotation

exon [dere_GLEANR_9327:10]; CDS [Dere\GG24617-cds]; intron [Dere\GG24617-in]

Repeatable elements

NameClassFamilyStrand
(TTCTCC)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCACCAGCAGTTCCAAGGCGGCCGCCGCGGCCAAGAGGGAGAAGGAGAAGGATAAGGAGGAGCGGCAGGCGAAGGTCGCCGAGCCGAGGACGCCAGCGAAACCGGCGAAGCAGGCGAAGAAGTAAGCCAATCCGATCCAGGATCGGGTTGAAGGTTAAGCCTCAGGTTAATGATTGTTGCAGCGTTTCGGGGGTCTTTTCAGTTCGTTATAGTTAGTAATGAGTTGAGTTCGCGTTTGATTTTGATTTGGC
**********************************************************************.....(((((..((((....((....))....))))......)))))..........((((((((((...)))))))))).....************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V108
head
 V107
male body		 M057
embryo
 M055
female body
 V040
embryo
 V060
head
.....................................................................................................................................GATCCAGGATCGGGTTGAAGGT................................................................................................ 22 0 1 3.00 3 1 1 0 0 1 0
...............................................................................................................................................................................................................TATAGTTAGTAATGAGTTGA........................ 20 0 1 3.00 3 1 1 0 0 1 0
...................................................................................................................................................................................................................................GTTCGCGTTTGATTTTGATTTGGC 24 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................................................................GTTTCGGGGGTCTTTTCAGTT............................................... 21 0 1 2.00 2 0 2 0 0 0 0
.....................................................................................................................................GATCCAGGATCGGGTTGAAGGTTAAGC........................................................................................... 27 0 1 2.00 2 1 0 1 0 0 0
................................................................................................................................................................................................................ATAGTTAGTAATGAGTTGA........................ 19 0 1 2.00 2 1 0 0 0 1 0
......................CTCCGCGGCCAAGAGGGAGAAGGG............................................................................................................................................................................................................. 24 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................................................................GATCCAGGATCGGGTTGAATGT................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................GAAGGTCGCCGAGCCGAGGAC................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................GTCTCGGGGGTCTTTTCAGTTCGTT........................................... 25 1 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................ATCCAGGATCGGGTTGAAGGTTAAG............................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................ATAGTTAGTAATGAGTTGAGTTCGC.................. 25 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................AGCGAAACCGGCGAAGCAGGC........................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
............................................................................CGCCGAGCCGAGGACGCCAGC.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0
......................CGCCGCGGCCAAGAGGGAGA................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0
...................................................ATAAGGAGGAGCGGCAGGC..................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................AGCCTCAGGTTAATGATTGT.......................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................GCGTTTCGGGGGTCTTTTCAGTTCGTT........................................... 27 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................................................GGTCTTTTCAGTTCGTTATAGTTAGT.................................. 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................CGAGCCGAGGACGCCAGC.......................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................GTAAGCCAATCCGATCCAGGATCGGGT....................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................GAGTTCGCGTTTGATTTTGATTTGGC 26 0 1 1.00 1 1 0 0 0 0 0
....................................................................................CGAGGACGCCAGCGAAACCGG.................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
............................................................................CGCCGAGCCGAGGACGCC............................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0
...................................................................GGCGAAGGTCGCCGAGCCGAGGACGC.............................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................GTTTCGGGGGTCTTTTCAGTTC.............................................. 22 0 1 1.00 1 0 0 0 1 0 0
.........................CGCGGCCAAGAGGGAGAAGGAGA........................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................TATAGTTAGTAATGAGTTGAGT...................... 22 0 1 1.00 1 0 0 0 0 0 1
.............................GCCAAGAGGGAGAAGGAGAA.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................................GCGCGTTTGATTTTGATTTGGC 22 1 1 1.00 1 0 0 1 0 0 0
........................................................................................................................................CCAGGATCGGGTTGAAGGTTAAGCCT......................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.......................................AGAAGGAGAAGGATAAGGAGGAGCGGC......................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................TATAGTTATTAATGAGTTGA........................ 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................GTTAGTAATGAGTTGAGTT..................... 19 0 1 1.00 1 0 0 0 1 0 0
.............................................AGAAGGATAAGGAGGAGC............................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................GATCCAGGATCGGGTTGAAGGTTAAG............................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1
..............................................................................................................................................................................................................................GTTGAGTTCGCGTTTGATTTTG....... 22 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................CGGCGAAGCAGGCGAAGA................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................CGAAGAAGTAAGCCAATCCG..................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0
...................................................................................................AACCGGCGAAGCAGGCGAAGAAGT................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0
.................................................................CAGGCGAAGGTCGCCGAGCCGAGGAC................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0
...................................................ATAAGGAGGAGCTGCAGGC..................................................................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0
.............................................AGACGAAAAAGGAGGAGCGGC......................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0
.................................................................................................................................................................................TGAAGCGTTTCGGCGTTCT....................................................... 19 3 15 0.07 1 0 0 0 0 1 0
..............................................GACGAAAAAGGAGGAGCGGC......................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GGTGGTCGTCAAGGTTCCGCCGGCGGCGCCGGTTCTCCCTCTTCCTCTTCCTATTCCTCCTCGCCGTCCGCTTCCAGCGGCTCGGCTCCTGCGGTCGCTTTGGCCGCTTCGTCCGCTTCTTCATTCGGTTAGGCTAGGTCCTAGCCCAACTTCCAATTCGGAGTCCAATTACTAACAACGTCGCAAAGCCCCCAGAAAAGTCAAGCAATATCAATCATTACTCAACTCAAGCGCAAACTAAAACTAAACCG
************************************************************************************************.....(((((..((((....((....))....))))......)))))..........((((((((((...)))))))))).....********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528801
follicle cells		 M055
female body
 V040
embryo
.......................................................................................................................................................TCCAATTCGGAGTGCCA................................................................................... 17 2 2 6.00 12 12 0 0
..................................................................................GGGCTCCTGCGGCCGCTTTTG.................................................................................................................................................... 21 3 5 0.20 1 0 1 0
...............TCCGCTGGCGGGGTCGGTT......................................................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0
...................................................................................................................................................ACCTTCCAATTTGGAATCC..................................................................................... 19 3 20 0.05 1 0 0 1
....................................................................CGGTTCCAGCGGCTCGAC..................................................................................................................................................................... 18 2 20 0.05 1 1 0 0
..............TTCCGCCGGCTGCGTCG............................................................................................................................................................................................................................ 17 2 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4929:1057166-1057416 - der_1241 CCACCAGCAGTTCCAAGGCGGCCG---------CCGCGGCCAAGAGGGAGAAGGAGAA-------------GGATAAGGA------GG---------------------AGCGG------------------------CAGG------------CGAAGG------------------TCGCCGAGCCGAGGACGCCAGCGAAACC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCGTTATAGTTAGTAA-T-GA---------G-------TT--------GAGTT--CGCGT-TT-GA--TTTTGATTT----GGC
droYak3 2L:989391-989666 - CCACCAGCAGTTCCAAGGCAGCCG---------CCGCGGCCAAGAAGGAGAAGGAAAGGGAGA-------AGGATAAGGA------GG------AGAA------G---GAGAAG------------CAGGCGAAGGATCAGG------------CGAAGG------------------TTGCCGAGCCGAGGACGCCAGCCAAAGC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCGTTATAGTCAGTAA-T-GC---------A-------TT--------GAGTT--CGCAT-TC-GA-TTTTTCATTT----GGC
droSec2 scaffold_11906:892-1153 + CCACCAGCAGTTCCAAGGCAGCCG---------CCGCGGCCACAAATGAGAAGGAGAA-------------GGATAAGGA------GT---------------------ATAAG------------CAGGCGAAGGATCAGG------------CCAAGG------------------TCGCCGAGCCGAGGACGCCAGCCAAACC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GG-TCTAGGAT----------------------------------------------------CAGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCG-TATAGTTAGTAA-T-GA---------A-------TT--------GAGTT--CGCAT-TC-GA--CTTTGATTT----GGC
droSim2 2l:961029-961290 - CCACCAGCAGTTCCAAGGCAGCCG---------CAGCGGCCAAGAAGGAGAAGGAGAA-------------GGATAAGGA------GG---------------------AGAAG------------CAGGCGAAGGATCAGG------------CCAAGG------------------TCGCAGAGCCGAGGACGCCAGCCAAACC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GG-TCCCGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCG-TATAGTTAGTAA-T-GA---------A-------TT--------GAGTT--CGCAT-TC-GA--CTTTGATTT----GGC
dm3 chr2L:1013826-1014095 - CCACCAGCAGTTCCAAGGCAGCCG---------CCGCGGCCAAGAAGGAGAAGGAGAA-------------GGATAAGGATAAGGAGG---------------------AGAAG------------CAGGCGAAGGATCAGG------------CCAAGG------------------TCGCCGAGCCGAGGACGCCAGCCAAATC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCG-TATAGTTAGTAA-T-GA---------A-------TT--------GAGTTTTTGCAT-TC-GA--CTTTGATTT----GGC
droEug1 scf7180000409005:211543-211800 + CCACCAGCAGTTCCAAGGCAGCGG---------CAGCAGCCAAGAAGGACAAGGA-------------------------------GG---------------------AGAAG------------CAGGCGAAGGATCAGTCCAAGGATCAACCCAAAG------------------TCGCCGAGCAGAGAACGCCAGCCAAGCC---AG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGCAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CTGTTTGTTATAGTTAGAAA-TTGA---------C-------TT--------AAGT---------TC-GA--TTTTGATTT----GGC
droBia1 scf7180000302188:867364-867627 + CCACCAGCAGCTCCAAGGCAGCCGCAGTCG---TGGCAGCCAAGAAGGAGAAGGA-------------------------------GG---------------------AGAAGCAGGCGAAGGATCAGACCAAGGATCAGC------------CCAAGG------------------TGGCCGAGCCGAGGACGCCAGCCAAATC---GG---CGAAGCAGGCCAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------T-GTTTCTTATAGCTAGAAA-TTGA---------A-------TT--------GAGTT--------TC-GA--TTTTCATTT----GGC
droTak1 scf7180000415264:385585-385841 + CCACCAGCAGTTCCAAGGCAGCCGCTGCCGCAGCCGCCGCCAAGAAGGAGAAGGA-------------------------------GG---------------------AGAAG------------CCAGCGAAGGATCAGG------------CCAAGG------------------TGGCCGAGCCAAAGACGCCGGCCAAACC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCTGGAT----------------------------------------------------CGGATTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----TTTT-------------------------------------------------CCGTTTGTTATAGCTAGAAA-TTGA---------C-------TT--------GAGT---------TC-GA--TTTTGATTT----GGC
droEle1 scf7180000490767:7475-7742 + CCACCAGCAGTTCCAAGGCAGCC------------------AA---GGAGCGGCA------GGAGAAGAA-GGCCAAGGA------T---------------CAGTCCAAGGAG------------CAGTCAAAGGATCAGCCCAAGGATCAGCCGAAG------------------------GAGCAGAAGACGCCAGCCAAGCC---GG---CGAAGCAGGCGAAG---AAGTAAACCAAC-------------CC-------------------------------------------A-TACAAAAT------C--------------------------------------------CCGGGTTGAA---GGTTAAGCC-----TCAGGTTTT--ATGATTGTTGCAGCGTTTCGGGGGTCTT----T----------------------------------------------------CTGTTTGTTATAGCTGGTAG-AA------GCAACA-------TT--------AAGT---------TC-GA--TTTTGAGTT----GGC
droRho1 scf7180000779383:2081-2357 + CCACCAGCAGCTCCAAGGCAGCCG---------CCGTGGCCAA---GGAGAAGGAGAAGGAGG-------AGAAGAAGGC------GG------CGAAGGATCAGGCGAAGGAT------------CAGGCGAAGGAGCAGT------------CCAAGG------------------GCGCAGAGCAGAAGACGCCAGCCAAGCC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAC-------------CC-----------------------------------------AGA-TCCAAAAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CTGTTCGTTATAGTTAGCAA-TTGA---------C-------TT--------GAGT---------TC-GA--TTTTGATTT----GGT
droFic1 scf7180000454155:211253-211526 - CCACCAGCAGCTCCAAGGCGGC------------------CAAAAAGGAGAAGGAGCG-------------GGAGAGGGA------GG------------------------AG------------CAGGCGAAG---CAGG------------CCAAGGACA---------CCAAGGCCGCGGAGCCGAGGACGCCAGCCAAGCC---GA---CGAAGCAGGCGAAG---AAGTGAGCCACT-------------CC------------------------------------------GA-TCCGGGAT------T-A-GATCGTATTGGA-----------------------------TCGGATCGGAATGGGTTAGG-A-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----TCCT-------------------------------------------------TAGTTCGTTATAGTTAGGAAATCGC---------A-------TT--------CAGT---------TCGGA-GGTATTATTT----GGC
droKik1 scf7180000302473:641602-641881 - CCACAAGCAGTTCCAAGGCAGCCGCAG------CCGCGGCCAA---GGAGAAGGAAAAGGAGA-------AGGAGAAGGA------GA---------------------AGGAG------------CAGCCGAAGGATCAGG------------CTCAGC---GGAAGGAGTCGAAGGGCGCGGAGCAAAAGACGCCGGCCAAACC---AG---CGAAGCAGACGAAGACGAAGTAATCCAGC-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTAAAGATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------C-GTTGTTTCTAGTTAGC-----GA---------A-------TT--------TAGT---------TC-GA--CTTTGAGTT----GGA
droAna3 scaffold_12943:3526120-3526391 - CCACCAGCAGCTCCAAGGCGGCTG---------------CCAA---GGAAAAGGAGAA------GGAAAA-TGATAAGGA------ACAGCAGCCGAA------GTCCAAGGAG------------CCGCCGAAGGAGCAGC------------CCAAG------------------------GAGCAGAAGACGCCGGCCAAGCC---AG---CTAAGCAGGCGAAG---AAGTAGACCAAC-------------CG------------------------------------------GAATCCG---------------------TTGGA----------------------------CTCCGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----TATT------------------------------------------------TTCGTT-GTTGTAGTTAAA-----GA---------A-------TA--TAGCTTCAGT---------TC-GA--CTTTGAGTT----GGC
droBip1 scf7180000396433:417204-417471 - CTACCAGCAGCTCCAAGGCGGCTG---------------CCAA---GGAGAAGGATAA-------------TGAAAAGGA------ACAACAGCAGAA------GTCCAAGGAG------------CCGCTGAAGGAGCAGC------------CCAAG------------------------GAGCAAAAGACGCCGGCCAAGCC---AG---CTAAGCAGGCGAAG---AAGTAGACCAAC-------------CG------------------------------------------GACTCCG---------------------TTGGA----------------------------TTCCGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----TATT------------------------------------------------TTCGTT-GTTGTAGTTAAA-----GA---------A-------TATATAGCTTCAGT---------TC-GA--CTTTGAGTT----GGC
dp5 4_group3:9433750-9434004 - CCACCAGCAGTGCGAAGGCCGCAG---------CAGCAGCCAA---GGAGAAG-------------------GATA---------------------------------------------------------AGGAGCAAC------------CCAAGG------------------CGGCCGAGCAGA------------------------AGAAGCAGGCGAAG---AAGTAGGTCAGC-------------CG------------------------------------------GA-TCCGGGAT------CGA-GATCGGG----ATCA------GGATCAGGATCAGGATAGGATCGGGTTGGAA--GG---AACC-----TCAGGTTAA--ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T----------------------------------------------------TTCGTTGTAGTTAGAAC-TT------TCAACTTTGTG--TT--------CCCT-------T-A-AGAGCGTATGATTT----GGC
droPer2 scaffold_8:622485-622751 - CCACCAGTAGTGCGAAGGCCGCAG---------CAGCAGCCAA---GGAGAAG-------------------GATAAGGA---------------------------------------------------GAAGGAGCAAC------------CCAAGG------------------CGGCCGAGCAGA------------------------AGAAGCAGGCGAAG---AAGTAGGTCAGC-------------CG------------------------------------------GA-TCCGGGAT------CGA-GATCGGG----ATCAGGATCAGGATCAGGATCAGGATAGGATCGGGTTGGAA--GG---AACC-----TCAGGTTAA--ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T----------------------------------------------------TTCGTTGTAGTTAGAAC-TT------TGAACT-------TT--------GTGTT--CCCTT-A-AGAGCGTATGATTT----GGC
droWil2 scf2_1100000004585:4302859-4303134 - CCACCAGTAGCATCAAGGCGGCGG---------CGG-------------------------------------------------------------------------------------------------------------------------------------------------AACAACAAAAGACGCCAGCCAAAAAACAGCAGCCGCAGCAGGCAAAG---AAGTAAATCAAC-------------G----------------------------------------------TCCACGTTCGGCGTT-AAT-TTAGT-TTCA---------T--------------------CATTTATTT---TCTTAAGTTTTGTTTGATGTTAC--AAAATTGTTGCAGCGTTTCGGGGGTCCC----T--TATATATATATATATATAATAGTTATATAGATATATCAATATATTGCCCTTTGTTCC-CTTAGTTATA-----GA---------A-------TT-GTGACTCTAAA---------TT-GA-TTTATTATTT----GGT
droVir3 scaffold_13246:2551140-2551456 - CCACCAGCAGCAGCAAGGCAGCAGCTGCCG---CGGCAGCCAA---GGAAAAGGAGCAGCAGAAGGAAAA-GGA------------GA---------AGGAACAGCAGAAGGAG------------AAGCAGAAGGAGCAGC------------CCAAGGT---------------GTCCGTTGAGCAAAAGACGCCGGC---------------------AGCGAAG---AAGTAGACGCGTCTCACAG-TAAAAAC-----AA---AAACAACAACAACAAAATAATAATCAAAAACAAA-ACAAAAAA----------------------------------------------------CATCTTTTA---GTTCAAA-------TC---------ACGTTTGTTGCAGCGTTTCGGGGGTCTC----TAAT------------------------------------------------TTAGTT-GTTGTAGTTAGTAT-T-AA---------A-----GATTAAC------GGTT--TTTGTTTC-AA--ATATACTTT----GGT
droMoj3 scaffold_6500:22901481-22901767 - CGACCAGCAGCAGCAAAGCAGCAGCAGCCG---CCGCAGCCAA---GGAGAAG----------------------------------------------------------------------------------GGGCCGG------------CCAAGGAGT---------CCACTCCCAAGGACTCCAAA------GC---GTC---CG---CTGAGCAGAAGAAG---AAATAGGCGCGC-----AGATAAAATG-----CA---AAACAACAA-AGCAAAA---------------------------------------TGAA----ACCAAAAACAAAAAAATAACCAAAATAATA--ATTCTTTA---GTTTAC--A-----TC---------ACGTTTGTTGCAGCGTTTCGGGGGTCTA----A--T------------------------------------------------TTAGTT-GTTGTAGCTAGTAT-T-AAAGTACACACA-------TT--------GTTT----TCAT-GC-AA--T-TTATGTTGAAAGGT
droGri2 scaffold_15126:3951774-3952073 - CCACCAGCAGCACCAAAGCAGCAGCTGCAG---CGGCAGCCAA---GGAGAAGGAGAA-------------GAAAAAGGA------AA---------------------AGGAG------------CCGCCGAAG------------------------------------------------GAGCAAAAAACGCCGGCCAAAAC---GGAGCCACAGCCGGCCAAG---AAGTAGGCAAAA-------------ACAAATACATAAAAAAAACAA-AAC-------------------AA-ACCAAAAA------------------------AAAAAAAAAATGATAACAAAAACAAA-ACAACTTTTA---GTTCAA--A-----TC---------ACGTTTGTTGCAGCGTTTCGGGGGTCTAGATTTATT-------------------------------------------------TAATT---AGTAACTAGTGA-TTAA------AACA-------T---------ATTT----TAA--ACAAA-TTTATGATTT-TTGGGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
CCACCAGCAGTTCCAAGGCGGCCG---------CCGCGGCCAAGAGGGAGAAGGAGAA-------------GGATAAGGA------GG---------------------AGCGG------------------------CAGG------------CGAAGG------------------TCGCCGAGCCGAGGACGCCAGCGAAACC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCGTTATAGTTAGTAA-T-GA---------G-------TT--------GAGTT--CGCGT-TT-GA--TTTTGATTT----GGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGT...................................................................................................................................................................................................2213.0030001110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTTAGTAA-T-GA---------G-------TT--------GA..................................2013.0030001110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT--CGCGT-TT-GA--TTTTGATTT----GGC2412.0020000020
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTT...................................................................................2112.0020000200
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGC..............................................................................................................................................................................................2712.0020100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTAGTAA-T-GA---------G-------TT--------GA..................................1912.0020001010
...........................................................................................................................................................GAAGG------------------TCGCCGAGCCGAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
.............................................................................................................................................................................................................................................................................................................A-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAG...............................................................................................................................................................................................2511.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTAGTAA-T-GA---------G-------TT--------GAGTT--CGC..........................2511.0010000100
.....................................................................................................................................................................................................AGCGAAACC---GG---CGAAGCAGGC.............................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...................................................................................................................................................................................CGCCGAGCCGAGGACGCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
......................CG---------CCGCGGCCAAGAGGGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
.........................................................................ATAAGGA------GG---------------------AGCGG------------------------CAGG------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................AGCC-----TCAGGTTA---ATGATTGT.....................................................................................................................................................................2011.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCGTT...............................................................................2711.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTT----T--T-------------------------------------------------CAGTTCGTTATAGTTAGT......................................................................2611.0010000010
......................................................................................................................................................................................CGAGCCGAGGACGCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
.........................................................................................................................................................................................................................................GTAAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGT.............................................................................................................................................................................................................2711.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTT--CGCGT-TT-GA--TTTTGATTT----GGC2611.0010000010
...........................................................................................................................................................................................CGAGGACGCCAGCGAAACC---GG---.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...................................................................................................................................................................................CGCCGAGCCGAGGACGCC........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
............................................................................................................................................GG------------CGAAGG------------------TCGCCGAGCCGAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTC..................................................................................2211.0011000000
..................................CGCGGCCAAGAGGGAGAAGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTTAGTAA-T-GA---------G-------TT--------GAGT................................2211.0010010000
......................................GCCAAGAGGGAGAAGGAGAA-------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
................................................................................................................................................................................................................................................................................................................CCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----T.......................................................................................................................................................................................2611.0010000100
................................................AGAAGGAGAA-------------GGATAAGGA------GG---------------------AGCGG------------------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTAA-T-GA---------G-------TT--------GAGTT--.............................1911.0011000000
......................................................AGAA-------------GGATAAGGA------GG---------------------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAG...............................................................................................................................................................................................2611.0010010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------TT--------GAGTT--CGCGT-TT-GA--TTTTG...........2211.0010000100
.............................................................................................................................................................................................................C---GG---CGAAGCAGGCGAAG---A.....................................................................................................................................................................................................................................................................................................................................................1811.0010000100
...............................................................................................................................................................................................................................CGAAG---AAGTAAGCCAAT-------------CC------------------------------------------G................................................................................................................................................................................................................................................................................2011.0011000000
..........................................................................................................................................................................................................AACC---GG---CGAAGCAGGCGAAG---AAGT..................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..........................................................................................................................................CAGG------------CGAAGG------------------TCGCCGAGCCGAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
droYak3
CCACCAGCAGTTCCAAGGCAGCCG---------CCGCGGCCAAGAAGGAGAAGGAAAGGGAGA-------AGGATAAGGA------GG------AGAA------G---GAGAAG------------CAGGCGAAGGATCAGG------------CGAAGG------------------TTGCCGAGCCGAGGACGCCAGCCAAAGC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCGTTATAGTCAGTAA-T-GC---------A-------TT--------GAGTT--CGCAT-TC-GA-TTTTTCATTT----GGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................CAAGAAGGAGAAGGAAAGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21111.001100400070000
........................................CAAGAAGGAGAAGGAAAGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00301010010000
.........................................AAGAAGGAGAAGGAAAGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00300000030000
..........................................................................................................................................CAGG------------CGAAGG------------------TTGCCGAGCCGAGGACGCC........................................................................................................................................................................................................................................................................................................................................................................................2913.00300000030000
...............................................................................................GAA------G---GAGAAG------------CAGGCGAAGGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000
.............................................................GA-------AGGATAAGGA------GG------AGAA------G---GAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000020000
......................................GCCAAGAAGGAGAAGGAAAGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000020000
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGT...................................................................................................................................................................................................2212.00200000020000
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---G.....................................................................................................................................................................................................2012.00200000020000
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGC..............................................................................................................................................................................................2712.00200000020000
..............................................................................................................GAAG------------CAGGCGAAGGATCAGG------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTCAGTAA-T-GC---------A-------TT--------GAGTT--.............................2311.00100000010000
..............................................................A-------AGGATAAGGA------GG------AGAA------G---GAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....CAGCAGTTCCAAGGCAGCCG---------CC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...........................................................................................................................................................GAAGG------------------TTGCCGAGCCGAGGACGCC........................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................GTTA---ATGATTGTTGCAGCGTTTCGG........................................................................................................................................................2511.00100000010000
.......................................CCAAGAAGGAGAAGGAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTCAGTAA-T-GC---------A-------TT--------GA..................................2011.00100000010000
.........................................................................................................................................................................................................................AGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------G................................................................................................................................................................................................................................................................................2611.00100000010000
.......................................CCAAGAAGGAGAAGGAAAGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................................................................A-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGT...................................................................................................................................................................................................2111.00100100000000
.......................................................................................................................................GATCAGG------------CGAAGG------------------TTGCCGAGCCGA...............................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCGTT...............................................................................2511.00100000100000
...........................................................................................................................................................GAAGG------------------TTGCCGAGCCGAGGACGCCAG......................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...............................................................................................................................................................G------------------TTGCCGAGCCGAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
...............................................................................................................................................................................................................................................................................................................TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----T.......................................................................................................................................................................................2711.00100000010000
.........................................................................ATAAGGA------GG------AGAA------G---GAGAAG------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
............................................................................................................GAGAAG------------CAGGCGAAGGATCAGG------------CGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.....................................................................................................................................................................................................................................................................................................................AT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----T.......................................................................................................................................................................................2111.00110000000000
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAG...............................................................................................................................................................................................2611.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................A---ATGATTGTTGCAGCGTTTCGGGGGT....................................................................................................................................................2611.00100100000000
.................................................................................................................................................................................................................................................................C------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GG....................................................................................................................................................................................................2211.00100010000000
.......................G---------CCGCGGCCAAGAAGGAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................AAGAAGGAGAAGGAAAGGGAGA-------AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.......................................................................................................................................GATCAGG------------CGAAGG------------------TTGCCGAGCCGAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
.............................................................................................................................................................................................................................................................................................................A-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGC..............................................................................................................................................................................................2611.00100000010000
..............................................................................................................GAAG------------CAGGCGAAGGATCAGG------------CGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.................................................................................................................................................................................................CGCCAGCCAAAGC---GG---CGAAGCAGGC.............................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.............................................................GA-------AGGATAAGGA------GG------AGAA------G---GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAA-T-GC---------A-------TT--------GAGTT--CGC..........................2111.00100000010000
........................................................................GATAAGGA------GG------AGAA------G---GAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000
...........................................................................................................................................................GAAGG------------------TTGCCGAGCCGAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................................................AAAGGGAGA-------AGGATAAGGA------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.....................................GGCCAAGAAGGAGAAGGAAAGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
......................................................AAAGGGAGA-------AGGATAAGGA------GG------AGAA------G---G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
......................................................................................GG------AGAA------G---GAGAAG------------CAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................CC-----TCAGGTTA---ATGATTGTTG...................................................................................................................................................................2011.00100000010000
.......................................CCAAGAAGGAGAAGGAAAGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.............................................................................................................................................................................................................................................................................................................A-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAA................................................................................................................................................................................................2411.00100000010000
...............................................................................................................................................................G------------------TTGCCGAGCCGAGGACGCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTT..................................................................................................................................................................................................2311.00100010000000
.....................................GGCCAAGAAGGAGAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100010000000
.......................................................................GGATAAGGA------GG------AGAA------G---GAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.25100100000000
droSec2
CCACCAGCAGTTCCAAGGCAGCCG---------CCGCGGCCACAAATGAGAAGGAGAA-------------GGATAAGGA------GT---------------------ATAAG------------CAGGCGAAGGATCAGG------------CCAAGG------------------TCGCCGAGCCGAGGACGCCAGCCAAACC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GG-TCTAGGAT----------------------------------------------------CAGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCG-TATAGTTAGTAA-T-GA---------A-------TT--------GAGTT--CGCAT-TC-GA--CTTTGATTT----GGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTTGCAGCGTTTCGG........................................................................................................................................................1911.0010100
..................................................................................................................................CGAAGGATCAGG------------CCAAGG------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.............................................................................................................................................................AGG------------------TCGCCGAGCCGAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.....................................................................................................................................................................................................................................................................................................................AT----------------------------------------------------CAGGTTGAA---GGTTAAGCC-----TCAGGT..................................................................................................................................................................................2611.0010010
droSim2
CCACCAGCAGTTCCAAGGCAGCCG---------CAGCGGCCAAGAAGGAGAAGGAGAA-------------GGATAAGGA------GG---------------------AGAAG------------CAGGCGAAGGATCAGG------------CCAAGG------------------TCGCAGAGCCGAGGACGCCAGCCAAACC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GG-TCCCGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCG-TATAGTTAGTAA-T-GA---------A-------TT--------GAGTT--CGCAT-TC-GA--CTTTGATTT----GGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................G------------------TCGCAGAGCCGAGGACGCCAGCCAAACC---............................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000000000
........................................CAAGAAGGAGAAGGAGAA-------------GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
.............................................................................................................................................................................................................................................................................................................G-TCCCGGAT----------------------------------------------------CGGGTTGAA---GG....................................................................................................................................................................................................2011.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TA---ATGATTGTTGCAGCGTTTCGG........................................................................................................................................................2311.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAA-T-GA---------A-------TT--------GAGTT--CGCAT-TC-GA--CTTT............2811.00100010000000000000
...............................................................................................................................................................G------------------TCGCAGAGCCGAGGACGCC........................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
...........................................................................................................................................................................................CGAGGACGCCAGCCAAACC---GG---C......................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
..............................................................................................................................................................GG------------------TCGCAGAGCCGAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................C-----TCAGGTTA---ATGATTGTTGCA.................................................................................................................................................................2111.00100100000000000000
.............................................................................................................................................................................................................................................................................................................G-TCCCGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGC..............................................................................................................................................................................................2611.00101000000000000000
...................................................................................................................................................................................CGCAGAGCCGAGGACGCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...................................................................................................................................GAAGGATCAGG------------CCAAGG------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
............................................................................................................................................................................................................................................................................................................GG-TCCCGGAT----------------------------------------------------CGGGTTGAA---GGT...................................................................................................................................................................................................2211.00100000000000100000
...................AGCCG---------CAGCGGCCAAGAAGGAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000100000
............................................................................................................................................................AAGG------------------TCGCAGAGCCGAGGACGCC........................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.........................................................................................................................................................................................................AAACC---GG---CGAAGCAGGCG............................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
.....................................GGCCAAGAAGGAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1570.14100000010000000000
dm3
CCACCAGCAGTTCCAAGGCAGCCG---------CCGCGGCCAAGAAGGAGAAGGAGAA-------------GGATAAGGATAAGGAGG---------------------AGAAG------------CAGGCGAAGGATCAGG------------CCAAGG------------------TCGCCGAGCCGAGGACGCCAGCCAAATC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CAGTTCG-TATAGTTAGTAA-T-GA---------A-------TT--------GAGTTTTTGCAT-TC-GA--CTTTGATTT----GGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGT...................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000
........................................CAAGAAGGAGAAGGAGAA-------------GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2024.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000005010100000000
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---G.....................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................A-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGC..............................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000
...................................................................................................................................................................................CGCCGAGCCGAGGACGCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTTGCAGCGTTTCGG........................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
.........................................................A-------------GGATAAGGATAAGGAGG---------------------AGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
...................................................................................................................................................................................CGCCGAGCCGAGGACGCC........................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................GGATAAGGAGG---------------------AGAAG------------CAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
...........................................................................................................................................................................................................................................AAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CG................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.......................................................GAA-------------GGATAAGGATAAGGAGG---------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................GAA---GGTTAAGCC-----TCAGGTTA---ATG..........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................A-TCCAGGAT----------------------------------------------------CGGGTTGAA---G.....................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTT..................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TGATTGTTGCAGCGTTTC..........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
........................................CAAGAAGGAGAAGGAGAA-------------GGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................AGG---------------------AGAAG------------CAGGCGAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................GAAGCAGGCGAAG---AAGTAAGCCAAT-------------C............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................T--T-------------------------------------------------CAGTTCG-TATAGTTAGTAA-T-.................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................CCGAGGACGCCAGCCAAATC---GG---CGA....................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCAGCAGTTCCAAGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................CGCCGAGCCGAGGACGCCAG......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................ATAAGGAGG---------------------AGAAG------------CAGGCGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................CGCCGAGCCGAGGACGCCA.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................G------------------TCGCCGAGCCGAGGACGCCAGCCA...................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................G------------------TCGCCGAGCCGAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..........................................................................TAAGGATAAGGAGG---------------------AGAAG------------CAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGC..............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................CCGCGGCCAAGAAGGAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................CCAAATC---GG---CGAAGCAGGCGAAG---A.....................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................T----T--T-------------------------------------------------CAGTTCG-TATAGTTAGTA.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................ATCAGG------------CCAAGG------------------TCGCCGAGCCGA...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-TATAGTTAGTAA-T-GA---------A-------TT--------GAGTT...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................CGGCCAAGAAGGAGAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GTTA---ATGATTGTTGCAGCGTTTCGG........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GTTA---ATGATTGTTGCAGCGTTTCG.........................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................CGAAGGATCAGG------------CCAAGG------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................GCCG---------CCGCGGCCAAGAAGGAGAAGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................GATAAGGAGG---------------------AGAAG------------CAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................GCCAAGAAGGAGAAGGAGAA-------------GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................GATAAGGATAAGGAGG---------------------AGAAG------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCG-TATAGTTAGTAA-T-G................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................GG---CGAAGCAGGCGAAG---AAGT..................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTT..................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................GCCGAGCCGAGGACGCCAGCCAA..................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTT----T--T-------------------------------------------------CAGTTCG-TATA............................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGGTTA---ATGATTGTTGCAGCGTTTCGG........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TATAGTTAGTAA-T-GA---------A-------TT--------GA..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................A---ATGATTGTTGCAGCGTTTCG.........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................AG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGG...............................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................GAA---GGTTAAGCC-----TCAGGTT.................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................GAAGCAGGCGAAG---AAGT..................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GAAGGAGAAGGAGAA-------------GGATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
................................................................................................................................................................................................................................................................................................................CCAGGAT----------------------------------------------------CGGGTTGAA---GGTTC.................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................CGAGGACGCCAGCCAAAT................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................A-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTA.................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GGTTA---ATGATTGTTGCAGCGTTTCGG........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................G------------CCAAGG------------------TCGCCGAGCCGAGG.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................ATAAGGAGG---------------------AGAAG------------CAGGCGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................GG------------------TCGCCGAGCCGAGGACGCC........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TA---ATGATTGTTGCAGCGTTTCGG........................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTT----T--T-------------------------------------------------CAGTTCG-TATAGTTA........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................AGGACGCCAGCCAAATC---GG---CGAAGC.................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................GAAG---AAGTAAGCCAAT-------------CC------------------------------------------.................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AGGATAAGGAGG---------------------AGAAG------------CAGGCGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................CAGCCG---------CCGCGGCCAAGAAGGAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGGCGAAGGATCAGG------------CCAAGG------------------TCGC.......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................CAAATC---GG---CGAAGCAGGCG............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-..............................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AGAA-------------GGATAAGGATAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................AGCCAAATC---GG---CGAAGCAGGCGAA..........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................G------------------TCGCCGAGCCGAGGACGCCA.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GG------------CCAAGG------------------TCGCCGAGCCGA...............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GAAGGATCAGG------------CCAAGG------------------TCGCCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCAGCGTTTCGGGG......................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------C.......................................................................................2311.0010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AAGAAGGAGAAGGAGAA-------------GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................AAGGATAAGGAGG---------------------AGAAG------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................CAAGAAGGAGAAGGAGAA-------------GGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................AGAAGGAGAA-------------GGATAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEug1
CCACCAGCAGTTCCAAGGCAGCGG---------CAGCAGCCAAGAAGGACAAGGA-------------------------------GG---------------------AGAAG------------CAGGCGAAGGATCAGTCCAAGGATCAACCCAAAG------------------TCGCCGAGCAGAGAACGCCAGCCAAGCC---AG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGCAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CTGTTTGTTATAGTTAGAAA-TTGA---------C-------TT--------AAGT---------TC-GA--TTTTGATTT----GGCSizeHit CountTotal NormTotal
No Reads
droBia1
CCACCAGCAGCTCCAAGGCAGCCGCAGTCG---TGGCAGCCAAGAAGGAGAAGGA-------------------------------GG---------------------AGAAGCAGGCGAAGGATCAGACCAAGGATCAGC------------CCAAGG------------------TGGCCGAGCCGAGGACGCCAGCCAAATC---GG---CGAAGCAGGCCAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------T-GTTTCTTATAGCTAGAAA-TTGA---------A-------TT--------GAGTT--------TC-GA--TTTTCATTT----GGCSizeHit CountTotal NormTotal
No Reads
droTak1
CCACCAGCAGTTCCAAGGCAGCCGCTGCCGCAGCCGCCGCCAAGAAGGAGAAGGA-------------------------------GG---------------------AGAAG------------CCAGCGAAGGATCAGG------------CCAAGG------------------TGGCCGAGCCAAAGACGCCGGCCAAACC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAT-------------CC------------------------------------------GA-TCCTGGAT----------------------------------------------------CGGATTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----TTTT-------------------------------------------------CCGTTTGTTATAGCTAGAAA-TTGA---------C-------TT--------GAGT---------TC-GA--TTTTGATTT----GGCSizeHit CountTotal NormTotal
No Reads
droEle1
CCACCAGCAGTTCCAAGGCAGCC------------------AA---GGAGCGGCA------GGAGAAGAA-GGCCAAGGA------T---------------CAGTCCAAGGAG------------CAGTCAAAGGATCAGCCCAAGGATCAGCCGAAG------------------------GAGCAGAAGACGCCAGCCAAGCC---GG---CGAAGCAGGCGAAG---AAGTAAACCAAC-------------CC-------------------------------------------A-TACAAAAT------C--------------------------------------------CCGGGTTGAA---GGTTAAGCC-----TCAGGTTTT--ATGATTGTTGCAGCGTTTCGGGGGTCTT----T----------------------------------------------------CTGTTTGTTATAGCTGGTAG-AA------GCAACA-------TT--------AAGT---------TC-GA--TTTTGAGTT----GGCSizeHit CountTotal NormTotal
No Reads
droRho1
CCACCAGCAGCTCCAAGGCAGCCG---------CCGTGGCCAA---GGAGAAGGAGAAGGAGG-------AGAAGAAGGC------GG------CGAAGGATCAGGCGAAGGAT------------CAGGCGAAGGAGCAGT------------CCAAGG------------------GCGCAGAGCAGAAGACGCCAGCCAAGCC---GG---CGAAGCAGGCGAAG---AAGTAAGCCAAC-------------CC-----------------------------------------AGA-TCCAAAAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------CTGTTCGTTATAGTTAGCAA-TTGA---------C-------TT--------GAGT---------TC-GA--TTTTGATTT----GGTSizeHit CountTotal NormTotal
No Reads
droFic1
CCACCAGCAGCTCCAAGGCGGC------------------CAAAAAGGAGAAGGAGCG-------------GGAGAGGGA------GG------------------------AG------------CAGGCGAAG---CAGG------------CCAAGGACA---------CCAAGGCCGCGGAGCCGAGGACGCCAGCCAAGCC---GA---CGAAGCAGGCGAAG---AAGTGAGCCACT-------------CC------------------------------------------GA-TCCGGGAT------T-A-GATCGTATTGGA-----------------------------TCGGATCGGAATGGGTTAGG-A-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----TCCT-------------------------------------------------TAGTTCGTTATAGTTAGGAAATCGC---------A-------TT--------CAGT---------TCGGA-GGTATTATTT----GGCSizeHit CountTotal NormTotal
No Reads
droKik1
CCACAAGCAGTTCCAAGGCAGCCGCAG------CCGCGGCCAA---GGAGAAGGAAAAGGAGA-------AGGAGAAGGA------GA---------------------AGGAG------------CAGCCGAAGGATCAGG------------CTCAGC---GGAAGGAGTCGAAGGGCGCGGAGCAAAAGACGCCGGCCAAACC---AG---CGAAGCAGACGAAGACGAAGTAATCCAGC-------------CC------------------------------------------GA-TCCAGGAT----------------------------------------------------CGGGTTGAA---GGTTAAGCC-----TCAGGTTAAAGATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T-------------------------------------------------C-GTTGTTTCTAGTTAGC-----GA---------A-------TT--------TAGT---------TC-GA--CTTTGAGTT----GGASizeHit CountTotal NormTotal
No Reads
droAna3
CCACCAGCAGCTCCAAGGCGGCTG---------------CCAA---GGAAAAGGAGAA------GGAAAA-TGATAAGGA------ACAGCAGCCGAA------GTCCAAGGAG------------CCGCCGAAGGAGCAGC------------CCAAG------------------------GAGCAGAAGACGCCGGCCAAGCC---AG---CTAAGCAGGCGAAG---AAGTAGACCAAC-------------CG------------------------------------------GAATCCG---------------------TTGGA----------------------------CTCCGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----TATT------------------------------------------------TTCGTT-GTTGTAGTTAAA-----GA---------A-------TA--TAGCTTCAGT---------TC-GA--CTTTGAGTT----GGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................GGCTG---------------CCAA---GGAAAAGGAGAA------GG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003000012
..........................................................................................................CCAAGGAG------------CCGCCGAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000020
..................................................................................................................................................................................................................G---CTAAGCAGGCGAAG---AAGT..................................................................................................................................................................................................................................................................................................................................................1912.002000002
..........................................................................................................................................................................................CAGAAGACGCCGGCCAAGCC---A...........................................................................................................................................................................................................................................................................................................................................................................2112.002200000
................................................................................................................................................................................................................................GAAG---AAGTAGACCAAC-------------CG------------------------------------------GA...............................................................................................................................................................................................................................................................................2012.002200000
...........................................................................................................................................AGC------------CCAAG------------------------GAGCAGAAGACGCC........................................................................................................................................................................................................................................................................................................................................................................................2212.002020000
........AGCTCCAAGGCGGCTG---------------CCAA---GG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.......................................................GAA------GGAAAA-TGATAAGGA------ACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..............................................................................................................................................................................................................................................................................................................ATCCG---------------------TTGGA----------------------------CTCCGGTTGAA---G.....................................................................................................................................................................................................2211.001000010
.......................................................GAA------GGAAAA-TGATAAGGA------ACAGCAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGT---------TC-GA--CTTTGAGTT----GGC2311.001010000
.......................G---------------CCAA---GGAAAAGGAGAA------GGAAAA-TG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.........................................................................................................................................GCAGC------------CCAAG------------------------GAGCAGAAGACGCC........................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............................................................................................................................................................................................................................................................................................................ATCCG---------------------TTGGA----------------------------CTCCGGTT............................................................................................................................................................................................................1811.001000001
................................................................GGAAAA-TGATAAGGA------ACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...............................................................................A------ACAGCAGCCGAA------GTCCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TA--TAGCTTCAGT---------TC-GA--CTTTGAG.........2411.001010000
.......................................................................................................................................GAGCAGC------------CCAAG------------------------GAGCAGAAGACGCC........................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.........................................................A------GGAAAA-TGATAAGGA------ACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.........................................................................................................................................GCAGC------------CCAAG------------------------GAGCAGAAGACGCCGC......................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGT---------TC-GA--CTTTGAGTT----GGC2011.001100000
...............................................................................................................................................................................................................................CGAAG---AAGTAGACCAAC-------------CG------------------------------------------G................................................................................................................................................................................................................................................................................2011.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTT----TATT------------------------------------------------TTCGTT-GTC...............................................................................1911.001010000
...............................................GAAAAGGAGAA------GGAAAA-T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
........................................................................GATAAGGA------ACAGCAGCCGAA------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTTGCAGCGTTTCGGG.......................................................................................................................................................2011.001100000
..........................................................................................................................................................................................CAGAAGACGCCGGCCAAGCC---............................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................CG---------------------TTGGA----------------------------CTCCGGTTGAA---G.....................................................................................................................................................................................................1911.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCAGCGTTTCGGG.......................................................................................................................................................1911.001000010
.........GCTCCAAGGCGGCTG---------------CCAA---GG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
.........GCTCCAAGGCGGCTG---------------CCAA---G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
CCACCAGCAGCTCCAAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-----GA---------A-------TA--TAGCTTCAGT---------TC-....................2111.001000010
...........................................................................................................................................AGC------------CCAAG------------------------GAGCAGAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----GA---------A-------TA--TAGCTTCAGT---------TC-GA--CTTTGAGT........2811.001100000
...................................................................AAA-TGATAAGGA------ACAGCAGCCGAA------GT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................TTA---ATGATTGTTGCAGCGTTTCGG........................................................................................................................................................2411.001010000
........................................................................GATAAGGA------ACAGCAGCCGAA------GTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..............................................................................................................................................................................................................................................................................................................ATCCG---------------------TTGGA----------------------------CTCCGGTTGAA---GGTT..................................................................................................................................................................................................2511.001000010
................................................AAAAGGAGAA------GGAAAA-TG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................................................................ATAAGGA------ACAGCAGCCGAA------GTCCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............................................................................................................................................................................................................................................ACCAAC-------------CG------------------------------------------GAATCCG---------------------TTGGA----------------------------....................................................................................................................................................................................................................2011.001000001
......................................................................................ACAGCAGCCGAA------GTCCAAGGAG------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
........................................................................................AGCAGCCGAA------GTCCAAGGAG------------CCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
........................................................AA------GGAAAA-TGATAAGGA------ACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
..............................................................................................................................................................................................................................................................................................................ATCCG---------------------TTGGA----------------------------CTCCGGTTGAA---GGT...................................................................................................................................................................................................2411.001000001
..............................................................................GA------ACAGCAGCCGAA------GTCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................TA---ATGATTGTTGCAGCGTTTCGGG.......................................................................................................................................................2411.001100000
droBip1
CTACCAGCAGCTCCAAGGCGGCTG---------------CCAA---GGAGAAGGATAA-------------TGAAAAGGA------ACAACAGCAGAA------GTCCAAGGAG------------CCGCTGAAGGAGCAGC------------CCAAG------------------------GAGCAAAAGACGCCGGCCAAGCC---AG---CTAAGCAGGCGAAG---AAGTAGACCAAC-------------CG------------------------------------------GACTCCG---------------------TTGGA----------------------------TTCCGGTTGAA---GGTTAAGCC-----TCAGGTTA---ATGATTGTTGCAGCGTTTCGGGGGTCTT----TATT------------------------------------------------TTCGTT-GTTGTAGTTAAA-----GA---------A-------TATATAGCTTCAGT---------TC-GA--CTTTGAGTT----GGCSizeHit CountTotal NormTotal
No Reads
dp5
CCACCAGCAGTGCGAAGGCCGCAG---------CAGCAGCCAA---GGAGAAG-------------------GATA---------------------------------------------------------AGGAGCAAC------------CCAAGG------------------CGGCCGAGCAGA------------------------AGAAGCAGGCGAAG---AAGTAGGTCAGC-------------CG------------------------------------------GA-TCCGGGAT------CGA-GATCGGG----ATCA------GGATCAGGATCAGGATAGGATCGGGTTGGAA--GG---AACC-----TCAGGTTAA--ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T----------------------------------------------------TTCGTTGTAGTTAGAAC-TT------TCAACTTTGTG--TT--------CCCT-------T-A-AGAGCGTATGATTT----GGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................AGAAG-------------------GATA---------------------------------------------------------AGGAGCAAC------------CCAAGG------------------CGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000003
...............................................................................................................................................................................................................................................CAGC-------------CG------------------------------------------GA-TCCGGGAT------CGA-GAT.........................................................................................................................................................................................................................................................2212.0020100100000
..................................................AAG-------------------GATA---------------------------------------------------------AGGAGCAAC------------CCAAGG------------------CGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000002
................................................................................................................................................................................................................................GAAG---AAGTAGGTCAGC-------------CG------------------------------------------GA-TCCGGG........................................................................................................................................................................................................................................................................2611.0010010000000
..................................AGCAGCCAA---GGAGAAG-------------------GATA---------------------------------------------------------AGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCT-------T-A-AGAGCGTATGATTT----GGC2311.0010000100000
...............................................................................................................................................................................................................................................CAGC-------------CG------------------------------------------GA-TCCGGGAT------CGA-GATCGG......................................................................................................................................................................................................................................................2511.0010100000000
.........................................................................ATA---------------------------------------------------------AGGAGCAAC------------CCAAGG------------------CGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
................................................................................................................................................................................................................................GAAG---AAGTAGGTCAGC-------------CG------------------------------------------GA-T.............................................................................................................................................................................................................................................................................2111.0010100000000
.................................................GAAG-------------------GATA---------------------------------------------------------AGGAGCAAC------------CCAAGG------------------CGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
...................................................................................................................................................................................................................................................................................................................................................................GATAGGATCGGGTTGGAA--G.....................................................................................................................................................................................................1911.0010000000001
..............................................................................................................................................................................................................................................................................................................................................................................................CC-----TCAGGTTAA--ATGATTGT.....................................................................................................................................................................1911.0010000100000
...............................................................................................................................................................................................................................................CAGC-------------CG------------------------------------------GA-TCCGGGAT------CGA-GATCGGG----.................................................................................................................................................................................................................................................2611.0010000001000
...........GCGAAGGCCGCAG---------CAGCAGCCAA---G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................A--ATGATTGTTGCAGCGTTTCGG........................................................................................................................................................2211.0010100000000
.........................................................................................................................................................................................................................AGCAGGCGAAG---AAGTAGGT..............................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................CGCAG---------CAGCAGCCAA---GGAGAAG-------------------GATA---------------------------------------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..............................................................................................................................................................................................................................................................................................................................................CA------GGATCAGGATCAGGATAGGATCGGGC.............................................................................................................................................................................................................2811.0010010000000
...........GCGAAGGCCGCAG---------CAGCAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........GCGAAGGCCGCAG---------CAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.............GAAGGCCGCAG---------CAGCAGCCAA---G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................CAA---GGAGAAG-------------------GATA---------------------------------------------------------AGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000000
.........................................................................................................................................................................................................................................GTAGGTCAGC-------------CG------------------------------------------GA-TCCGGGAT------................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................................................................................................................................................GCAGGCGAAG---AAGTAGGTCA............................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................G---AAGTAGGTCAGC-------------CG------------------------------------------GA-TCCGGGAT------C...............................................................................................................................................................................................................................................................2611.0010000010000
.............................................................................................................................................................................................................................................................................................................................CGA-GATCGGG----ATCA------GGAT...................................................................................................................................................................................................................................1830.3310100000000
.................................................................................................................................................................................................................................................................................................................................GATCGGG----ATCA------GGATCAGGAT.............................................................................................................................................................................................................................2130.3310100000000
............................................................................................................................................................................................................................................................................................................................................ATCA------GGATCAGGATCAGGAT.......................................................................................................................................................................................................................2070.2920000100001
............................................................................................................................................................................................................................................................................................................................................ATCA------GGATCAGGATCAGG.........................................................................................................................................................................................................................18110.0910100000000
droPer2
CCACCAGTAGTGCGAAGGCCGCAG---------CAGCAGCCAA---GGAGAAG-------------------GATAAGGA---------------------------------------------------GAAGGAGCAAC------------CCAAGG------------------CGGCCGAGCAGA------------------------AGAAGCAGGCGAAG---AAGTAGGTCAGC-------------CG------------------------------------------GA-TCCGGGAT------CGA-GATCGGG----ATCAGGATCAGGATCAGGATCAGGATAGGATCGGGTTGGAA--GG---AACC-----TCAGGTTAA--ATGATTGTTGCAGCGTTTCGGGGGTCTT----T--T----------------------------------------------------TTCGTTGTAGTTAGAAC-TT------TGAACT-------TT--------GTGTT--CCCTT-A-AGAGCGTATGATTT----GGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................AAG-------------------GATAAGGA---------------------------------------------------GAAGGAGCAAC------------CC.................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003300000
........................................................................GATAAGGA---------------------------------------------------GAAGGAGCAAC------------CCAAGG------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
..............................................GGAGAAG-------------------GATAAGGA---------------------------------------------------GAAGGAGCAAC------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
.......................................................................................................................................................................................................................GAAGCAGGCGAAG---AAGTAGGT..............................................................................................................................................................................................................................................................................................................................................2112.002000002
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT--CCCTT-A-AGAGCGTATGATTT----GG.2511.001010000
...............................................................................................................................................................................................................................CGAAG---AAGTAGGTCAGC-------------CG------------------------------------------GA-TCCGGGAT------................................................................................................................................................................................................................................................................2911.001100000
................................................................................................................................................................................................................................................................................................................................................................CAGGATAGGATCGGGTTGGAA--G.....................................................................................................................................................................................................2211.001001000
.......................................................................................................................................GAGCAAC------------CCAAGG------------------CGGCCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCTT----T--T----------------------------------------------------TTCGTTGTAGTT.........................................................................2111.001000001
...................................................................................................................................................................................................................................................................................................................................................TCAGGATCAGGATCAGGATAGGATCGG...............................................................................................................................................................................................................2711.001000001
...................................................................................................................................................................................GGCCGAGCAGA------------------------AGAAGCAGGCG............................................................................................................................................................................................................................................................................................................................................................2211.001000001
..............................................................................................................................................................................................................................................................................................................................................................................GTTGGAA--GG---AACC-----TCAGG...................................................................................................................................................................................1811.001000010
......GTAGTGCGAAGGCCGCAG---------CAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..........................................................................TAAGGA---------------------------------------------------GAAGGAGCAAC------------CCAAGG------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAAC-TT------TGAACT-------TT--------GTGTT--.............................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTAA--ATGATTGTTGCAGCGTTTCGGG.......................................................................................................................................................2611.001010000
CCACCAGTAGTGCGAAGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.........................................................................................................................................................................................................................AGCAGGCGAAG---AAGTAGGTCA............................................................................................................................................................................................................................................................................................................................................2111.001001000
.........................................................................................................................................................................................................................AGCAGGCGAAG---AAGTAGGT..............................................................................................................................................................................................................................................................................................................................................1911.001000001
....................................................................................................................................................................................................................................................................................................................................................................ATAGGATCGGGTTGGAA--GG---A................................................................................................................................................................................................2011.001100000
....................................................................................................................................................................................................................................................................................................................................CGGG----ATCAGGATCAGGATCA.................................................................................................................................................................................................................................2030.672200000
...................CGCAG---------CAGCAGCCAA---GGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501001000
.............................................................................................................................................................................................................................................................................................................................CGA-GATCGGG----ATCAGGAT.........................................................................................................................................................................................................................................1830.331100000
droWil2
CCACCAGTAGCATCAAGGCGGCGG---------CGG-------------------------------------------------------------------------------------------------------------------------------------------------AACAACAAAAGACGCCAGCCAAAAAACAGCAGCCGCAGCAGGCAAAG---AAGTAAATCAAC-------------G----------------------------------------------TCCACGTTCGGCGTT-AAT-TTAGT-TTCA---------T--------------------CATTTATTT---TCTTAAGTTTTGTTTGATGTTAC--AAAATTGTTGCAGCGTTTCGGGGGTCCC----T--TATATATATATATATATAATAGTTATATAGATATATCAATATATTGCCCTTTGTTCC-CTTAGTTATA-----GA---------A-------TT-GTGACTCTAAA---------TT-GA-TTTATTATTT----GGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................GTTCGGCGTT-AAT-TTAGT-TTCA---------T--------------------C.................................................................................................................................................................................................................2413.00330000
.................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGTTGCAGCGTTTCGG........................................................................................................................................................2013.00300210
......GTAGCATCAAGGCGGCGG---------CGG-------------------------------------------------------------------------------------------------------------------------------------------------AAC.....................................................................................................................................................................................................................................................................................................................................................................................................2412.00220000
...........ATCAAGGCGGCGG---------CGG-------------------------------------------------------------------------------------------------------------------------------------------------AAC.....................................................................................................................................................................................................................................................................................................................................................................................................1912.00210100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-CTTAGTTATA-----GA---------A-------TT-GTGACTCT...................................2612.00220000
...................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCAGCGTTTCGG........................................................................................................................................................1812.00201010
.........................................................................................................................................................................................................AAAAAACAGCAGCCGCAGCAGGCAAAG---A.....................................................................................................................................................................................................................................................................................................................................................2812.00200002
...................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCAGCGTTTCGGG.......................................................................................................................................................1912.00200110
.................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGTTGCAGCGTTTCGGGGGTCCC----.............................................................................................................................................2711.00100100
......GTAGCATCAAGGCGGCGG---------CGG-------------------------------------------------------------------------------------------------------------------------------------------------AA......................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCAGCGTTTCGGGG......................................................................................................................................................1811.00100100
................................................................................................................................................................................................................................................................................................................CCACGTTCGGCGTT-AAT-TTAGT-....................................................................................................................................................................................................................................................2211.00100100
............................................................................................................................................................................................................AAACAGCAGCCGCAGCAGGCAAAG---A.....................................................................................................................................................................................................................................................................................................................................................2511.00100010
..........................................................................................................................................................................................................................................TAAATCAAC-------------G----------------------------------------------TCCACGTTCGGC..................................................................................................................................................................................................................................................................2211.00101000
...............AGGCGGCGG---------CGG-------------------------------------------------------------------------------------------------------------------------------------------------AACAACAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCAGCGTTTCGGGGGTCC..................................................................................................................................................2411.00100001
..............................................................................................................................................................................................................ACAGCAGCCGCAGCAGGCAAAG---AAG...................................................................................................................................................................................................................................................................................................................................................2511.00100001
..................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTTGCAGCGTTTCGG........................................................................................................................................................1911.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTGATGTTAC--AAAATTGTTGC..................................................................................................................................................................2611.00100001
................................................................................................................................................................................................................................................................G----------------------------------------------TCCACGTTCGGCGTT-AAT-T.........................................................................................................................................................................................................................................................2011.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGTTATATAGATAT........................................................................................................1911.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGCCCTTTGTTCC-CTTAGTT.........................................................................2411.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCAGCGTTTCGGGGGTCCC----.............................................................................................................................................2511.00100001
..................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTTGCAGCGTTTCG.........................................................................................................................................................1811.00100001
...........................................................................................................................................................................................................................................................................................................................GTT-AAT-TTAGT-TTCA---------T--------------------CATTTATTT---......................................................................................................................................................................................................2511.00100010
....................................................................................................................................................................................................................................................................................................................GTTCGGCGTT-AAT-TTAGT-TTC.................................................................................................................................................................................................................................................2111.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTTGCAGCGTTTCGGGGGTCCC----T--T.........................................................................................................................................2811.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----GA---------A-------TT-GTGACTCTAAA---------TT-GA-TTTA.............2711.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGCAGCGTTTCGGGGGTCCC----.............................................................................................................................................2411.00100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTTATA-----GA---------A-------TT-GTGACTCT...................................2311.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTTGCAGCGTTTCGGGGGTCCC----.............................................................................................................................................2611.00100100
droVir3
CCACCAGCAGCAGCAAGGCAGCAGCTGCCG---CGGCAGCCAA---GGAAAAGGAGCAGCAGAAGGAAAA-GGA------------GA---------AGGAACAGCAGAAGGAG------------AAGCAGAAGGAGCAGC------------CCAAGGT---------------GTCCGTTGAGCAAAAGACGCCGGC---------------------AGCGAAG---AAGTAGACGCGTCTCACAG-TAAAAAC-----AA---AAACAACAACAACAAAATAATAATCAAAAACAAA-ACAAAAAA----------------------------------------------------CATCTTTTA---GTTCAAA-------TC---------ACGTTTGTTGCAGCGTTTCGGGGGTCTC----TAAT------------------------------------------------TTAGTT-GTTGTAGTTAGTAT-T-AA---------A-----GATTAAC------GGTT--TTTGTTTC-AA--ATATACTTT----GGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................GGC---------------------AGCGAAG---AAGTAGACGC............................................................................................................................................................................................................................................................................................................................................2012.002000000000100000000000000000000000000000000000000000000000000010
...................................................AGGAGCAGCAGAAGGAAAA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000020000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................GTCCGTTGAGCAAAAGACGCC........................................................................................................................................................................................................................................................................................................................................................................................2112.002000100000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------TTAGTT-GTTGTAGTTAGTA.....................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GTAGACGCGTCTCACAG-TAAAAAC-----AA---.................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................G------------AAGCAGAAGGAGCAGC------------CCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................CGGC---------------------AGCGAAG---AAGTAGACGC............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................GAGCAGC------------CCAAGGT---------------GTCCGTT......................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................GGAG------------AAGCAGAAGGAGCAGC------------CC.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AGACGCGTCTCACAG-TAAA..............................................................................................................................................................................................................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................AAAGACGCCGGC---------------------AGCGAAG---A.....................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GACGCCGGC---------------------AGCGAAG---AAGTAGACG.............................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................CCGGC---------------------AGCGAAG---AAGTAGACGC............................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGTTTCGGGGGTCT..................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AGAAGGAGCAGC------------CCAAGGT---------------G............................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GAAGGAGCAGC------------CCAAGGT---------------GTCCGT.......................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AAGGT---------------GTCCGTTGAGCAAAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-T-AA---------A-----GATTAAC------GGTT--TTTGT........................2211.001000100000000000000000000000000000000000000000000000000000000000
...........AGCAAGGCAGCAGCTGCCG---CGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
............GCAAGGCAGCAGCTGCCG---CGGCAGCCAA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................AAGGAG------------AAGCAGAAGGAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................A-GGA------------GA---------AGGAACAGCAGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTC----TAAT------------------------------------------------TTAGTT-GTTGTA............................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TTTA---GTTCAAA-------TC---------ACGTTTGTTGCAGC...............................................................................................................................................................2711.001000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAT-T-AA---------A-----GATTAAC------GGTT--TT...........................2111.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................AGAAGGAG------------AAGCAGAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTC-AA--ATATACTTT----GGT1911.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAT-T-AA---------A-----GATTAAC------GGTT--T............................2011.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................AGCAGC------------CCAAGGT---------------GTCCGTTGA....................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GCGAAG---AAGTAGACGCGTCTCACA....................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----GATTAAC------GGTT--TTTGTTTC-A...................2111.001000000000000000000000000000100000000000000000000000000000000000
........AGCAGCAAGGCAGCAGCTGCCG---CGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGCGAAG---AAGTAGACGCGTC.........................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
....................................CAGCCAA---GGAAAAGGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................GTCCGTTGAGCAAAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TTA---GTTCAAA-------TC---------ACGTTTGT.....................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................A-GGA------------GA---------AGGAACAGCAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................AGTAGACGCGTCTCACAG-T.................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................GGCAGCCAA---GGAAAAGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AA---------A-----GATTAAC------GGTT--TTTGTTTC-AA--................2511.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................CCAAGGT---------------GTCCGTTGAGCA.................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
..............................................................AAGGAAAA-GGA------------GA---------AGGAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
.............................................................GAAGGAAAA-GGA------------GA---------AGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.251000000000000000000000000000000000000100000000000000000000000000
droMoj3
CGACCAGCAGCAGCAAAGCAGCAGCAGCCG---CCGCAGCCAA---GGAGAAG----------------------------------------------------------------------------------GGGCCGG------------CCAAGGAGT---------CCACTCCCAAGGACTCCAAA------GC---GTC---CG---CTGAGCAGAAGAAG---AAATAGGCGCGC-----AGATAAAATG-----CA---AAACAACAA-AGCAAAA---------------------------------------TGAA----ACCAAAAACAAAAAAATAACCAAAATAATA--ATTCTTTA---GTTTAC--A-----TC---------ACGTTTGTTGCAGCGTTTCGGGGGTCTA----A--T------------------------------------------------TTAGTT-GTTGTAGCTAGTAT-T-AAAGTACACACA-------TT--------GTTT----TCAT-GC-AA--T-TTATGTTGAAAGGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................TAAAATG-----CA---AAACAACAA-AGCA...................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGCAGCGTTTCGGGGGTCTA----A--T------------------------------------------------.........................................................................................2611.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTT----TCAT-GC-AA--T-TTATGTT.......2011.001100000
...............................................................................................................................................................................................................................AGAAG---AAATAGGCGCGC-----AG...................................................................................................................................................................................................................................................................................................................................1911.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTCTA----A--T------------------------------------------------TTAGTT-GTTGTAGCT.........................................................................2511.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................TTAC--A-----TC---------ACGTTTGTTGCAGCGTTTCG.........................................................................................................................................................2711.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCAGCGTTTCGGGGGT....................................................................................................................................................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................TTAC--A-----TC---------ACGTTTGTTGCAGCGTTTCGG........................................................................................................................................................2811.001000001
.......................................................................................................................................................................................GACTCCAAA------GC---GTC---CG---CTGAGCAG...............................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........................................................................................................................................................................................CTCCAAA------GC---GTC---CG---CTGAG..................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTGTTGCAGCGTTTCGGT.......................................................................................................................................................2111.001000100
...........................................................................................................................................................CAAGGAGT---------CCACTCCCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........CAGCAAAGCAGCAGCAGCCG---CCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCTA----A--T------------------------------------------------TTAGTT-GTTGTAGCTAGT......................................................................2711.001000001
............................................................................................................................................................................................................................................................................................................................................................................................C--A-----TC---------ACGTTTGTTGCAGCGTTTCGGG.......................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTA----A--T------------------------------------------------TTAGTT-GTTGTAGC..........................................................................1911.001000001
.......................................................................................................................................................................................GACTCCAAA------GC---GTC---CG---CTGAGC.................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTA----A--T------------------------------------------------TTAGTT-GTTGTAGCTAGT......................................................................2511.001000001
................AGCAGCAGCAGCCG---CCGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droGri2
CCACCAGCAGCACCAAAGCAGCAGCTGCAG---CGGCAGCCAA---GGAGAAGGAGAA-------------GAAAAAGGA------AA---------------------AGGAG------------CCGCCGAAG------------------------------------------------GAGCAAAAAACGCCGGCCAAAAC---GGAGCCACAGCCGGCCAAG---AAGTAGGCAAAA-------------ACAAATACATAAAAAAAACAA-AAC-------------------AA-ACCAAAAA------------------------AAAAAAAAAATGATAACAAAAACAAA-ACAACTTTTA---GTTCAA--A-----TC---------ACGTTTGTTGCAGCGTTTCGGGGGTCTAGATTTATT-------------------------------------------------TAATT---AGTAACTAGTGA-TTAA------AACA-------T---------ATTT----TAA--ACAAA-TTTATGATTT-TTGGGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:41 PM