der_1186

----##############################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GAAAATGGCAGATGAACAACCAAATCTTGTGGCCGGACACCCACCTGCATGTAAGTGCACTTGCATTGGTGTGTGTAGGTGCATGCGATGTTTTCTTCTTTGGCAGCAATAGAATCTTATAAAAACAAAGTGCCTTGCTGGCAATTCATAATGCACTCAATCCAATCAATTGTCAGAATATCTGCGCCCTTATCAGTATCTTAACCTGTTTCGACCAAAGCTGATAAGTAAACAAACAAGAACACACACAC ************************************************....((((((((((((......))))))))))))(((.(((........(((.((((((......(((.........)))....)))))).)))........)))..((((.......)))).((((...)))))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	V108 head	M057 embryo	V040 embryo
...........................................................CTTGCATTGGTGTGTGTA..............................................................................................................................................................................	18	0	1	2.00	2	0	2	0	0
.............................................................................................................................................................CAAGCCAATCTATTGTCAGA..........................................................................	20	2	1	1.00	1	0	0	0	1
..........GATGAACAACCAAATCTTGTG............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.....................................................................................................................TATAAAAACAAGGTGCCTTGC.................................................................................................................	21	1	1	1.00	1	1	0	0	0
................................................................ATTGGTGTGTGTAGGTGCATGCGAT..................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0
......GGCAGATGAACAACCAAATCTTGTGGCC.........................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	1	0
.................AACCAAATCTTGTGGCCGGACACCCA................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0
...................CCAAATCTTGTGGCCGGACACCCACC..............................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0
....................................................GAGTGCACCTGCATTGGTGT...................................................................................................................................................................................	20	2	2	0.50	1	0	0	0	1
..............................................................................................................................................................CATCAAATCAATTGTCAGA..........................................................................	19	2	3	0.33	1	0	0	0	1
..............................................................................................................................................................ACTCAAATCTATTGTCAGA..........................................................................	19	3	20	0.05	1	0	0	0	1

CTTTTACCGTCTACTTGTTGGTTTAGAACACCGGCCTGTGGGTGGACGTACATTCACGTGAACGTAACCACACACATCCACGTACGCTACAAAAGAAGAAACCGTCGTTATCTTAGAATATTTTTGTTTCACGGAACGACCGTTAAGTATTACGTGAGTTAGGTTAGTTAACAGTCTTATAGACGCGGGAATAGTCATAGAATTGGACAAAGCTGGTTTCGACTATTCATTTGTTTGTTCTTGTGTGTGTG ************************************************....((((((((((((......))))))))))))(((.(((........(((.((((((......(((.........)))....)))))).)))........)))..((((.......)))).((((...)))))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	V040 embryo	V060 head
.....................................................................................................................................................TTACGTGAGTTAGGTTAGTTA.................................................................................	21	0	1	1.00	1	1	0	0
.....................................................TCACGTGAACATTACCACATA.................................................................................................................................................................................	21	3	5	0.20	1	0	1	0
....................................................................................CGATAAGAAAGAAGAAACCGT..................................................................................................................................................	21	3	5	0.20	1	0	0	1

Species	Coordinate	ID	Alignment
droEre2	scaffold_4845:18549167-18549417 +	der_1186	GAAAATGGCAGATGAACAACCAAATCTTGTGGCCGGACACCCACCTGCATGTAAGTGCACT------------TGCATTGGT---------------------------GTGTG--TAG-G------TGCA--------TGCGATGTTTTC------------T-TCTT-------TGGCAGCAATAGAATCTTATAAAA------A-------CAAA--------GTGCCTTGCTGGCAATTCATAATGCACTCAAT-CCAATCAA-TTGT-CA-GAATATCTGCG---CCCTTATCAGTATCTTAACCTGTTTCGACCAA---------AGCTGATAAGTAAACAAACAAG-----AACACACACAC
droYak3	2R:9715082-9715334 +	dya_519	GAAAATGGCGGATGAACAACCAAATCTTGTAGCCGGACACCCACCTGCATGTAAGTGCACT------------TTCATTGGT---------------------------GTGTGTGTGG-G------TGCA--------GGCG-AGCTTTT-------G----T-TTTTTT-----TGGCAGCAATGTAATCTTATAAGA------A-------AAAA--------GTGCCTTGTTGGCAATTAATAAGGCACCCAAT-ACAATCAA-TTGC-CA-GAATATCTACG---CCCTTATCAGTATCTGAACCTGTTTCTACCAA---------AGCTGATAAGTAAACAAACAAG-------CACACACAC
droSec2	scaffold_1:4802595-4802842 -		GAAAATGGCAGATGAACAACCAAATCTTGTGGCCGGACACCCACCTGCATGTAAGTGCACT------------TGCATTGGT---------------------------GTGTG--TGG-G------TGCA--------G-CG-AGTTTTC-------G----T-TTTT-------TGGCAGCAATTGAATCTTATAAGA------A-------CAAA--------TTGCCTTGCTGGCAATCAATAATGCACCCAAT-CCAATCAA-TTGC-CA-GAATATCTGCG---CCCTTATCAGTATCTTAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAACAAG-------CGAACACAC
droSim2	2r:7956264-7956502 -	dsi_3068	GGAAATGGCAGATGAACAACCAAATCTTGTGGCCGGACACCCACCTGCATGTAAGTGCACT------------TGCATTGGT---------------------------GTGTG--TGG-G------TGCA--------G-CG-AGTTTTC-------G----T-TTTT-------TGGCAGCAATTGAATCTTATAAGA------A-------CAAA--------TTGCCTTGCTGGCAATCAACAATGCACGCAAT-CCAATCAA-TTGC-CA-GAATATCTGCG---CCCTTATCAGTATCTTAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAACAAG----------------
dm3	chr2R:7246260-7246512 -		ACAAATGGCAGATGAACAACCAAATCTTGTGGCCGGACACCCACCTGCATGTAAGTGCACT------------TGCATTGGT---------------------------GTGTG--TGT-GTCG--ATGCA--------GACG-AGTTTTC-------G----A-TTTT-------TGGCAGCAATTGAATCTTATAAGA------A-------CAAA--------CTGCCTTGTTGGCAATCAATAATGCACCCAAT-CAAATCAA-TTGC-CA-GAATATCTGCG---CCCTTATCAGTATCTTAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAATAAG-------CGAACACAG
droEug1	scf7180000409462:1262036-1262298 +		GAAAATGGCAGATGAACAACCCAATCTTGTGGCTGGACACCCACCTGCATGTAAGTGCACT------------TCCATGAGT---------------------------GTGTA--TGT-G--TGTGTGCA--------GGCA-TCTTTTGT------C-TTTTCTTTT-------TGACATCAACTAAATCCAATAAGA------AATCTA--CGAA--------TTGCTTTGTTGGCAATTAATAATACGCCCAAT-CCTATCAA-TTGC-CA-CAATATCTACG---GCCTTATCAGTATCTTAACCTGTTTCGGCCAA---------CGCTGATAAGTAAACAAACAAC-------CACACACAC
droBia1	scf7180000301754:1047262-1047516 +		GAAAATGGCAGATGAACAACCCAATCTTGTGGCTGGACACCCACCTGCATGTAAGTGCACT------------TGCATAGGT---------------------------GTGCG--TGT-G------TGCA--------GGCT-TGTTCTC------CG----T-TTTTCTCATTTCG---ACAA----TTCCAATAAGA------AATCTA--GGAG--------CTGCCCCGCTGGCAATTAACAATGCAACCAAT-CCTATCAA-TTGC-CC-CAATATCTACG---CCCTTATCAGTATC-TAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAACAAC------CAGCACACAC
droTak1	scf7180000415138:26201-26437 +		GAAAATGGCAGATGAACAACCCAATCTTGTGGCTGGACACCCACCTGCATGTAAGTGCAAT------------TGCATTGGT---------------------------GTGCG--TGT-G------TGCA--------GGC-----TTT-------------T-TTTT-------TGGGAACAG-----TTCAATAAGA------AATCTA--CGAA--------TTGCCCCGCTGGCAATTAATAATGCAGCCAAT-CCTATCAA-TTGC-CA-GAATATCTACG----CCTTATCAGTATCTTAACCTGTTTCG---------------GCTGATAAGTAAACAAACAAG------CCGCACACAC
droEle1	scf7180000491214:2689776-2690015 -		AAAAATGGCTGATGAACAACCCAATCTTGTTGCTGGACACCCACCTGCATGTAAGTGCACT------------TGCATTGGT---------------------------GTGCG--TGT-G------TGCA--------GTCA-TGTTTTT-------G----T-TTTT-------CCACAAAAA-----TTCCATAGGA------AATCAA--CGAA--------TTGCCCCGCTGGCAATTAATAATACTCCCAAT-CCTATCAA-TTGC-CA-CAATATCTACT---CCCTTATCAGTATCTTAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAACAAC----------------
droRho1	scf7180000779263:317884-318129 +		GACAATGGCTGATGAACAACCCAATCTTGTTGCTGGACACCCACCTGCATGTAAGTGCACT------------TGCATTAGT---------------------------GTGTG--TGT-G------TGCA--------GGCA-TGTTTTT-------G----T-TTTT-------CGACAATAA-----TTCCATAAGA------AATCTA--CGTA--------CTGCCCTGCTGGCAATTAATAATGCTCCCAAT-CCTATCAA-TTGC-CA-CAATATCTACG---GCCTTATCAGTATTTTAACCTGTTTCGTCAAA---------TGCTGATAAGTAAACAAACAAC----------CCGCAC
droFic1	scf7180000453773:180751-181014 -		GAAAATGGCAGATGAACAACCCAATCTTGTGGCTGGACACCCACCTGCATGTAAGTTATCT------------TGCAGTTGT---------------------------GTGTGTCTGT-G------TGCT--------GGCA-TGTTGTGTTTTTACGCTTTT-TTTT------TTG-T-AG-----AATCCAATAAGA------AATCTA--CG-A--------TTGCCCCGTTGGCAATTAATAAAGCACCAAAT-CCTATCAA-TTGC-CA-CAATATCTACA--AACCTTATCAGTATCTTAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAACAAC--T--CGCACACATAC
droKik1	scf7180000302476:75668-75946 -		GAAAATGGCAGATGAGCAACCGAATCTTGTGGCTGGCCACCCACCTGCACGTAAGTGCACTT------A---TTGCATTGGT---------------------------ATGCGTGTGA-G------TTCGTGCTCGGGGGCA-TGTTTTT-------G----T-TTT--------TGCC--CAAATAAATCCAATTGTA------AGGCTG--GGAGGTACTTATTTGCCTTGCTGGCAATTAATAATGCAGCAATT-CGTATCAA-TGGC-CA-CAATATCTACG---GCCTTATCAGTATTTTAACCTGTTTCGTCCAA---------AGCTGATAAGTAAACAAACAACCCGGGCTCGCACACAC
droAna3	scaffold_13266:944254-944522 -		TAAAATGGCTGATGAGCAACCAAATCTGGTGGCCGGACACCCACCTGCACGTAAGTGCAAT------------TGCATTGGTGTGCAGCACGCG------------TGGGTGTG--TGT-G------TGCGTATGAAAAGGAA-TGTTTTT-------G----T-TTTC-------TG--AACAA-----TTCAATAAGCCGGATGA-------TAGA--------ATGCCTTGCTGGCAATTAATTATACACCGATT-CGTATCAA-TAGC-CA-CAATATCTACT---GCCTTATCAGTATTTTAACCTGTTTCGCCCAA---------TGCTGATAAGTAAACAAACT---------CACACACTC
droBip1	scf7180000396730:1953143-1953408 -		TAAAATGGCTGATGAGCAACCAAATCTGGTGGCCGGACACCCACCTGCACGTAAGTGCAAT------------TGCATCAGTGTGCGGCGGACG------------TGG----G--TGT-G------TGCGTTTGAAAAGGAA-TGTTTTT-------G----T-TTTT-------C-TCAAT-----AATCCAATAAGCCGGATGA-------TAGA--------ATGCCTTGCTGGCAATTAACCATATACCGATT-CGTATGAA-TAGC-CC-CAATATCTACT---GCCTTATCAGTATTTTAACATGTTTCGGCCAA---------AGCTGATAAGTAAACAAACT---------CACACACTC
dp5	3:14099696-14099971 -		GAAAATGTCTGATGAACAACCCAATCTCGTGGCTGGACACCCACCTGCTTGTAAGTGTAAT------------TGCATAGGTATTCTCCATGCGCTTTGATGTATTTGTGTGCTTGTGT-GTGAATGTGTA--------GGA--------------------------------------GGTAAA-AA--GTATTAAAA------TGGCTAT-GGAG--------GTGCTCCGCTGACAATTGATTGTGCACCCAATTCACAACAA-TAGC-CACCAATATCTATT---GCCTTATCAGTATCTTAGCCTGCTTCGGCAGA---------TGCTGATAAGCAATAAGAAAAC--GAAGCAACACGCTC
droPer2	scaffold_4:1218261-1218536 +		GAAAATGTCTGATGAACAACCCAATCTCGTGGCTGGACACCCACCTGCTTGTAAGTGTAAT------------TGCATAGGTATTCTCCATGCGCTTTGATGTATTTGTGTGCTTGTGT-GTGAATGTGTA--------GGA--------------------------------------GGTAAA-AA--GTATTAAAA------TGGCTAT-GGAG--------GTGCTCCGCTGGCAATTGATTGTGCACCCAATTCACAACAA-TAGC-CACCAATATCTATT---GCCTTATCAGTATCTTAGCCTGCTTCGGCAGA---------TGCTGATAAGCAATAAGAAAAC--GAAGCAACACTGTC
droWil2	scf2_1100000004512:2250186-2250453 -		A--TATGGCTGATGAACAACCAAATCTTGTGGCGGGCCACCCACCTGCACGTAAGTGCAAGTCCACATG---TTTCAATG-T-------------------------GTGTGTGTGTGT-G------TGTA--------TGC--------------------------T-------TGGGAGTAATGAACAATTAT---T------TGGTGCTCCAAA--------ATGCTTTGTTGGCAATTTTAAATGTACTCAAT-TTAATTAAATAGTTCATAAATATCTTGAGGTACCTTATCAATATATTCACCTGCTTCACCCAATTTCATAGAGGCTGATAAGTAAACAAAGCAC----ACTCATACATAT
droVir3	scaffold_12875:5745918-5745977 -		A-ACATGGCTGATGAACAACCAAATTTGGTAGCTGGACATCCACCTGCATGTAAGTGCACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6496:24318490-24318633 +		A-ACATGGCGGACGAACAACCGAATCTAGTAGCTGGACACCCACCTGCATGTAAGTGCATTTAGAGATTCTCTTCCATT-GT---------------------------GTGTG--TTGGG----TATGC----------GCG-TGTCTT--------G----T--------------------ATGTAATCTTTTAATA------A-------AA-------------TTTTGCTGGATTTTTATAA-------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15112:680860-680917 -		AACAATGGCTGATGAACAACCCAATCTGGTGGCTGGACACCCACCTGCATGTAAGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

GAAAATGGCAGATGAACAACCAAATCTTGTGGCCGGACACCCACCTGCATGTAAGTGCACT------------TGCATTGGT---------------------------GTGTG--TAG-G------TGCA--------TGCGATGTTTTC------------T-TCTT-------TGGCAGCAATAGAATCTTATAAAA------A-------CAAA--------GTGCCTTGCTGGCAATTCATAATGCACTCAAT-CCAATCAA-TTGT-CA-GAATATCTGCG---CCCTTATCAGTATCTTAACCTGTTTCGACCAA---------AGCTGATAAGTAAACAAACAAG-----AACACACACAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................CT------------TGCATTGGT---------------------------GTGTG--TA...........................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
..........GATGAACAACCAAATCTTGTG..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
............................................................................ATTGGT---------------------------GTGTG--TAG-G------TGCA--------TGCGAT................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
......GGCAGATGAACAACCAAATCTTGTGGCC...............................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
.................AACCAAATCTTGTGGCCGGACACCCA......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
...................CCAAATCTTGTGGCCGGACACCCACC....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0

droYak3

GAAAATGGCGGATGAACAACCAAATCTTGTAGCCGGACACCCACCTGCATGTAAGTGCACT------------TTCATTGGT---------------------------GTGTGTGTGG-G------TGCA--------GGCG-AGCTTTT-------G----T-TTTTTT-----TGGCAGCAATGTAATCTTATAAGA------A-------AAAA--------GTGCCTTGTTGGCAATTAATAAGGCACCCAAT-ACAATCAA-TTGC-CA-GAATATCTACG---CCCTTATCAGTATCTGAACCTGTTTCTACCAA---------AGCTGATAAGTAAACAAACAAG-------CACACACAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................CTTGTAGCCGGACACCCACCTGC.................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.....................AAATCTTGTAGCCGGACACCCACCTGC.................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
GAAAATGGCGGATGAACAAC.............................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..AAATGGCGGATGAACAACCA...........................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
......................AATCTTGTAGCCGGACACCCACCTGCA................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................ATCTTGTAGCCGGACACCCACCTGC.................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................AATCTTGTAGCCGGACACCCACC....................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.AAAATGGCGGATGAACAACCA...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................AATCTTGTAGCCGGACACCCACCTGC.................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACCCAAT-ACAATCAA-TTGC-CA-GAAT.........................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................ACCAAATCTTGTAGCCGGACACCCACC....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CACCCAAT-ACAATCAA-TTGC-CA-GAA..........................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................AACCAAATCTTGTAGCCGGACACCCACC....................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.AAAATGGCGGATGAACAACC............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................CATTGGT---------------------------GTGTGTGTGG-G------T.................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GGCGGATGAACAACCAAATCTTGTAGCC...............................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droSec2

GAAAATGGCAGATGAACAACCAAATCTTGTGGCCGGACACCCACCTGCATGTAAGTGCACT------------TGCATTGGT---------------------------GTGTG--TGG-G------TGCA--------G-CG-AGTTTTC-------G----T-TTTT-------TGGCAGCAATTGAATCTTATAAGA------A-------CAAA--------TTGCCTTGCTGGCAATCAATAATGCACCCAAT-CCAATCAA-TTGC-CA-GAATATCTGCG---CCCTTATCAGTATCTTAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAACAAG-------CGAACACAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................AATATCTGCG---CCCTTATCAGT....................................................................	21	1	1.00	1	1	0	0	0
...............ACAACCAAATCTTGTGGCCGGA............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.....................................................AGTGCACT------------TGCATTGGT---------------------------GTGT................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...AATGGCAGATGAACAACC............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
............................................................................ATTGGT---------------------------GTGTG--TGG-G------TGCA--------G-C...................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.....TGGCAGATGAACAACCAAAT........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.............GAACAACCAAATCTTGTGGCC...............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0

droSim2

GGAAATGGCAGATGAACAACCAAATCTTGTGGCCGGACACCCACCTGCATGTAAGTGCACT------------TGCATTGGT---------------------------GTGTG--TGG-G------TGCA--------G-CG-AGTTTTC-------G----T-TTTT-------TGGCAGCAATTGAATCTTATAAGA------A-------CAAA--------TTGCCTTGCTGGCAATCAACAATGCACGCAAT-CCAATCAA-TTGC-CA-GAATATCTGCG---CCCTTATCAGTATCTTAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAACAAG----------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....TGGCAGATGAACAACCAAATCTTG....................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.....TGGCAGATGAACAACCAAATCTTGTGG.................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.....TGGCAGATGAACAACCAAATCTTGTGGC................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TTAACCTGTTTCGGCCAA---------AGCTGA................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..AAATGGCAGATGAACAACC............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

ACAAATGGCAGATGAACAACCAAATCTTGTGGCCGGACACCCACCTGCATGTAAGTGCACT------------TGCATTGGT---------------------------GTGTG--TGT-GTCG--ATGCA--------GACG-AGTTTTC-------G----A-TTTT-------TGGCAGCAATTGAATCTTATAAGA------A-------CAAA--------CTGCCTTGTTGGCAATCAATAATGCACCCAAT-CAAATCAA-TTGC-CA-GAATATCTGCG---CCCTTATCAGTATCTTAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAATAAG-------CGAACACAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....TGGCAGATGAACAACCAA..........................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CAAATGGCAGATGAACAACCAA..........................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CAAATGGCAGATGAACAACC............................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AACCAAATCTTGTGGCCGGACA..........................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AACCAAATCTTGTGGCCGGACACCC.......................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TCTTGTGGCCGGACACCCACCT...................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.............................................................................TTGGT---------------------------GTGTG--TGT-GTCG--ATGC...............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................ATTGGT---------------------------GTGTG--TGT-GTCG--AT.................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TAACCTGTTTCGGCCAA---------AGCTGA................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TCTTGTGGCCGGACACCCACCTGCATT..............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GGCCGGACACCCACCTGC.................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAAGTGCACT------------TGCATTGGT---------------------------GTGTG--TG...........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TATCTTAACCTGTTTCGG...................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTGTGGCCGGACACCCACCTGC.................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

GAAAATGGCAGATGAACAACCCAATCTTGTGGCTGGACACCCACCTGCATGTAAGTGCACT------------TCCATGAGT---------------------------GTGTA--TGT-G--TGTGTGCA--------GGCA-TCTTTTGT------C-TTTTCTTTT-------TGACATCAACTAAATCCAATAAGA------AATCTA--CGAA--------TTGCTTTGTTGGCAATTAATAATACGCCCAAT-CCTATCAA-TTGC-CA-CAATATCTACG---GCCTTATCAGTATCTTAACCTGTTTCGGCCAA---------CGCTGATAAGTAAACAAACAAC-------CACACACAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAAAATGGCAGATGAACAACCCAATCTTGTGGCTGGACACCCACCTGCATGTAAGTGCACT------------TGCATAGGT---------------------------GTGCG--TGT-G------TGCA--------GGCT-TGTTCTC------CG----T-TTTTCTCATTTCG---ACAA----TTCCAATAAGA------AATCTA--GGAG--------CTGCCCCGCTGGCAATTAACAATGCAACCAAT-CCTATCAA-TTGC-CC-CAATATCTACG---CCCTTATCAGTATC-TAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAACAAC------CAGCACACAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAAAATGGCAGATGAACAACCCAATCTTGTGGCTGGACACCCACCTGCATGTAAGTGCAAT------------TGCATTGGT---------------------------GTGCG--TGT-G------TGCA--------GGC-----TTT-------------T-TTTT-------TGGGAACAG-----TTCAATAAGA------AATCTA--CGAA--------TTGCCCCGCTGGCAATTAATAATGCAGCCAAT-CCTATCAA-TTGC-CA-GAATATCTACG----CCTTATCAGTATCTTAACCTGTTTCG---------------GCTGATAAGTAAACAAACAAG------CCGCACACAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAAATGGCTGATGAACAACCCAATCTTGTTGCTGGACACCCACCTGCATGTAAGTGCACT------------TGCATTGGT---------------------------GTGCG--TGT-G------TGCA--------GTCA-TGTTTTT-------G----T-TTTT-------CCACAAAAA-----TTCCATAGGA------AATCAA--CGAA--------TTGCCCCGCTGGCAATTAATAATACTCCCAAT-CCTATCAA-TTGC-CA-CAATATCTACT---CCCTTATCAGTATCTTAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAACAAC----------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GACAATGGCTGATGAACAACCCAATCTTGTTGCTGGACACCCACCTGCATGTAAGTGCACT------------TGCATTAGT---------------------------GTGTG--TGT-G------TGCA--------GGCA-TGTTTTT-------G----T-TTTT-------CGACAATAA-----TTCCATAAGA------AATCTA--CGTA--------CTGCCCTGCTGGCAATTAATAATGCTCCCAAT-CCTATCAA-TTGC-CA-CAATATCTACG---GCCTTATCAGTATTTTAACCTGTTTCGTCAAA---------TGCTGATAAGTAAACAAACAAC----------CCGCAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAAAATGGCAGATGAACAACCCAATCTTGTGGCTGGACACCCACCTGCATGTAAGTTATCT------------TGCAGTTGT---------------------------GTGTGTCTGT-G------TGCT--------GGCA-TGTTGTGTTTTTACGCTTTT-TTTT------TTG-T-AG-----AATCCAATAAGA------AATCTA--CG-A--------TTGCCCCGTTGGCAATTAATAAAGCACCAAAT-CCTATCAA-TTGC-CA-CAATATCTACA--AACCTTATCAGTATCTTAACCTGTTTCGGCCAA---------AGCTGATAAGTAAACAAACAAC--T--CGCACACATAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAAAATGGCAGATGAGCAACCGAATCTTGTGGCTGGCCACCCACCTGCACGTAAGTGCACTT------A---TTGCATTGGT---------------------------ATGCGTGTGA-G------TTCGTGCTCGGGGGCA-TGTTTTT-------G----T-TTT--------TGCC--CAAATAAATCCAATTGTA------AGGCTG--GGAGGTACTTATTTGCCTTGCTGGCAATTAATAATGCAGCAATT-CGTATCAA-TGGC-CA-CAATATCTACG---GCCTTATCAGTATTTTAACCTGTTTCGTCCAA---------AGCTGATAAGTAAACAAACAACCCGGGCTCGCACACAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TAAAATGGCTGATGAGCAACCAAATCTGGTGGCCGGACACCCACCTGCACGTAAGTGCAAT------------TGCATTGGTGTGCAGCACGCG------------TGGGTGTG--TGT-G------TGCGTATGAAAAGGAA-TGTTTTT-------G----T-TTTC-------TG--AACAA-----TTCAATAAGCCGGATGA-------TAGA--------ATGCCTTGCTGGCAATTAATTATACACCGATT-CGTATCAA-TAGC-CA-CAATATCTACT---GCCTTATCAGTATTTTAACCTGTTTCGCCCAA---------TGCTGATAAGTAAACAAACT---------CACACACTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................AACCAAATCTGGTGGCCGGACACCCAC.....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................TCAATAAGCCGGATGA-------TAGA--------ATGC...........................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.................AACCAAATCTGGTGGCCGGACACC........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
............................GTGGCCGGACACCCACCTGC.................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................AACCAAATCTGGTGGCCGGACACCCA......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......GGCTGATGAGCAACCAAATCT......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TTTTAACCTGTTTCGCCCAA---------T.....................................	21	1	1.00	1	1	0	0	0	0	0
................CAACCAAATCTGGTGGCCGGA............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................GGCCGGACACCCACCTGCA................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.AAAATGGCTGATGAGCAACC............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.......................ATCTGGTGGCCGGACACCCAC.....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTATTTTAACCTGTTTCGCCC.................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................GGATGA-------TAGA--------ATGCCTTGCTG....................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........GATGAGCAACCAAATCTGGT...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................G--AACAA-----TTCAATAAGCCGGAT....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.....................AAATCTGGTGGCCGGACACCCA......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................CAACCAAATCTGGTGGCCGGACACCCACC....................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.........................CTGGTGGCCGGACACCCAC.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droBip1

TAAAATGGCTGATGAGCAACCAAATCTGGTGGCCGGACACCCACCTGCACGTAAGTGCAAT------------TGCATCAGTGTGCGGCGGACG------------TGG----G--TGT-G------TGCGTTTGAAAAGGAA-TGTTTTT-------G----T-TTTT-------C-TCAAT-----AATCCAATAAGCCGGATGA-------TAGA--------ATGCCTTGCTGGCAATTAACCATATACCGATT-CGTATGAA-TAGC-CC-CAATATCTACT---GCCTTATCAGTATTTTAACATGTTTCGGCCAA---------AGCTGATAAGTAAACAAACT---------CACACACTC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GAAAATGTCTGATGAACAACCCAATCTCGTGGCTGGACACCCACCTGCTTGTAAGTGTAAT------------TGCATAGGTATTCTCCATGCGCTTTGATGTATTTGTGTGCTTGTGT-GTGAATGTGTA--------GGA--------------------------------------GGTAAA-AA--GTATTAAAA------TGGCTAT-GGAG--------GTGCTCCGCTGACAATTGATTGTGCACCCAATTCACAACAA-TAGC-CACCAATATCTATT---GCCTTATCAGTATCTTAGCCTGCTTCGGCAGA---------TGCTGATAAGCAATAAGAAAAC--GAAGCAACACGCTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............GAACAACCCAATCTCGTGGCT...............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................CAACCCAATCTCGTGGCTG..............................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............ACAACCCAATCTCGTGGCTGG.............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CAACCCAATCTCGTGGCTGGACACCCACC....................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TGATGAACAACCCAATCTCGTGG.................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................ACCCAATCTCGTGGCTGGA............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........ATGAACAACCCAATCTCGTGGCTGGA............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................AATCTCGTGGCTGGACACCCACCT...................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............TGAACAACCCAATCTCGTG..................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GTCTGATGAACAACCCAATCTCGT...................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................TCGTGGCTGGACACCCACC....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CAACCCAATCTCGTGGCTGGA............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................AACCCAATCTCGTGGCTGGAC...........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........GATGAACAACCCAATCTCGTGGCT...............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........CTGATGAACAACCCAATCTCGTGG.................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
GAAAATGTCTGATGAACAACCC...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TGATGAACAACCCAATCTCGTGGC................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CTCGTGGCTGGACACCCACCTGCTTG..............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................TCGTGGCTGGACACCCACCTGCTT...............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................AACCCAATCTCGTGGCTGGACACCCACCT...................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................TCGTGGCTGGACACCCACCTGCTTTG.............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............AACAACCCAATCTCGTGGCTGGA............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....TGTCTGATGAACAACCCAATCTCGTGG.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................TGT-GTGAATGTGTA--------GGA--------------------------------------GGT..........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
........CTGATGAACAACCCAATCTCGTGGCT...............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TGATGAACAACCCAATCTCGTGGCTGG.............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............GAACAACCCAATCTCGTGGCTGGAC...........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......TCTGATGAACAACCCAATCT......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................TGGCTGGACACCCACCTGCT................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............TGAACAACCCAATCTCGTGGCTGGAC...........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....TGTCTGATGAACAACCCA..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........................CGTGGCTGGACACCCACCTGCTTTG.............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CTCGTGGCTGGACACCCACCTGCTT...............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................CGTGGCTGGACACCCACCTGCTTA..............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..AAATGTCTGATGAACAACCC...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
GAAAATGTCTGATGAACAACCCAAT........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................TGTGT-GTGAATGTGTA--------GGA--------------------------------------GTG..........................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0

droPer2

GAAAATGTCTGATGAACAACCCAATCTCGTGGCTGGACACCCACCTGCTTGTAAGTGTAAT------------TGCATAGGTATTCTCCATGCGCTTTGATGTATTTGTGTGCTTGTGT-GTGAATGTGTA--------GGA--------------------------------------GGTAAA-AA--GTATTAAAA------TGGCTAT-GGAG--------GTGCTCCGCTGGCAATTGATTGTGCACCCAATTCACAACAA-TAGC-CACCAATATCTATT---GCCTTATCAGTATCTTAGCCTGCTTCGGCAGA---------TGCTGATAAGCAATAAGAAAAC--GAAGCAACACTGTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..AAATGTCTGATGAACAAC.............................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
.....TGTCTGATGAACAACCCAATCTCGTGGCT...............................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.....TGTCTGATGAACAACCCAATCTCGTGGC................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..................ACCCAATCTCGTGGCTGGA............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................CAATCTCGTGGCTGGACACCCACCTGC.................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
......GTCTGATGAACAACCCAATCTCGT...................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....ATGTCTGATGAACAACCC...........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.......TCTGATGAACAACCCAATCTC.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droWil2

A--TATGGCTGATGAACAACCAAATCTTGTGGCGGGCCACCCACCTGCACGTAAGTGCAAGTCCACATG---TTTCAATG-T-------------------------GTGTGTGTGTGT-G------TGTA--------TGC--------------------------T-------TGGGAGTAATGAACAATTAT---T------TGGTGCTCCAAA--------ATGCTTTGTTGGCAATTTTAAATGTACTCAAT-TTAATTAAATAGTTCATAAATATCTTGAGGTACCTTATCAATATATTCACCTGCTTCACCCAATTTCATAGAGGCTGATAAGTAAACAAAGCAC----ACTCATACATAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....ATGGCTGATGAACAACCA...........................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
...TATGGCTGATGAACAACC............................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CATAGAGGCTGATAAGTAAACAAAG...................	25	1	1.00	1	0	1	0	0	0
.............................................................................................................GTGTGTGTGT-G------TGTA--------TGC--------------------------T-------TGGGAGTAA........................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
...TATGGCTGATGAACAACCAAATCTTG....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................CACCCAATTTCATAGAGGC...................................	19	1	1.00	1	1	0	0	0	0
...TATGGCTGATGAACAACCAAA.........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.................................................................................................................GTGTGT-G------TGTA--------TGC--------------------------T-------TGGGA............................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...TATGGCTGATGAACAACCA...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
A--TATGGCTGATGAACAACCAAATC.......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
...............................................................................................................GTGTGTGT-G------TGTA--------TGC--------------------------T-------TGGGAGTAA........................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
................CAACCAAATCTTGTGGCGG..............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
A--TATGGCTGATGAACAAC.............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
...........................................................................................................GTGTGTGTGTGT-G------TGTA--------TG....................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0

droVir3

A-ACATGGCTGATGAACAACCAAATTTGGTAGCTGGACATCCACCTGCATGTAAGTGCACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................AAATTTGGTAGCTGGACATCCACC....................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTGGTAGCTGGACATCCACC....................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GGTAGCTGGACATCCACCTGC.................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AACCAAATTTGGTAGCTGGA............................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AATTTGGTAGCTGGACATCCACCT...................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................CAAATTTGGTAGCTGGACA..........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CCAAATTTGGTAGCTGGA............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ACAACCAAATTTGGTAGCTGGA............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTTGGTAGCTGGACATCCG......................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGGTAGCTGGACATCCACC....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AAATTTGGTAGCTGGACATCC.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................ACCAAATTTGGTAGCTGGA............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AACCAAATTTGGTAGCTGGAC...........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GGTAGCTGGACATCCACC....................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ACATGGCTGATGAACAACCAAA.........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GATGAACAACCAAATTTGGTAGCT...............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATGGCTGATGAACAACCAAATTTGGT...................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AACCAAATTTGGTAGCTGGACATCCACCT...................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTGGTAGCTGGACATCCACCTGC.................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ATTTGGTAGCTGGACATCCACCTG..................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTTGGTAGCTGGACATCCACCTGCA................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTTGGTAGCTGGACATCCACC....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GAACAACCAAATTTGGTAGCTGGACATCC.......................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CAACCAAATTTGGTAGCTGG.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TCCACCTGCATGTAAGTGCA......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

A-ACATGGCGGACGAACAACCGAATCTAGTAGCTGGACACCCACCTGCATGTAAGTGCATTTAGAGATTCTCTTCCATT-GT---------------------------GTGTG--TTGGG----TATGC----------GCG-TGTCTT--------G----T--------------------ATGTAATCTTTTAATA------A-------AA-------------TTTTGCTGGATTTTTATAA-------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............GAACAACCGAATCTAGTAGCT...............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..........GACGAACAACCGAATCTAGTAGCT...............................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
......................AATCTAGTAGCTGGACACCCACCTG..................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...CATGGCGGACGAACAACCGAAT........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................ATCTAGTAGCTGGACACCCACCTG..................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................AGCTGGACACCCACCTGCA................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...CATGGCGGACGAACAACCGA..........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......GGCGGACGAACAACCGAATCTAGTAGCT...............................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................GG----TATGC----------GCG-TGTCTT--------G----T--------------------ATG......................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........GGACGAACAACCGAATCTAGTAGCT...............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droGri2

AACAATGGCTGATGAACAACCCAATCTGGTGGCTGGACACCCACCTGCATGTAAGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................GTGGCTGGACACCCACCTG..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
...AATGGCTGATGAACAACCCA..........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
..CAATGGCTGATGAACAACCCAATCTG.....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0
...............ACAACCCAATCTGGTGGCTGGAC...........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
AACAATGGCTGATGAACAACCCA..........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0

der_1186

scaffold_4845:18549217-18549367 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-31.5	-31.4	-31.4