ID:

der_115

 Coordinate:

scaffold_4929:18305730-18305798 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.6 -35.8 -35.8

Flybase annnotation

intron [Dere\GG23357-in]; utr5 [utr5_plus_3445]

No Repeatable elements found

Sense Strand Reads

ACAAGTCGGAAAAGTCGTACTTTTAGATACGAGATACCTAAGATTACCCATCTCGAATAGCGTTGTGACTGAGGTAACTGCGCATCGAATCTACTCAGCGGCAAGGCTATTCCAGTAAGGTTATTTTGGGCCAGCGACTCAACGACCGGAAAACAGGGGTGTTAACTAT

***********************************.((((((((.(((...((.(((((((.((((..(((((.......((...))......)))))..)))).))))))).))...))).))))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 V107

male body		 V108

head

 GSM1528801

follicle cells		 V040

embryo

 M057

embryo

 V060

head
..................................................TCTCGAATAGCGTTGTGACTG.................................................................................................. 21 0 1 2879.00 2879 1546 944 240 0 87 19 43
..................................................TCTCGAATAGCGTTGTGACTGA................................................................................................. 22 0 1 2833.00 2833 1564 676 157 143 132 126 35
..................................................TCTCGAATAGCGTTGTGACT................................................................................................... 20 0 1 2625.00 2625 1199 1024 302 3 17 41 39
...................................................CTCGAATAGCGTTGTGACTG.................................................................................................. 20 0 1 323.00 323 200 110 10 0 0 0 3
...................................................CTCGAATAGCGTTGTGACTGAG................................................................................................ 22 0 1 303.00 303 144 123 23 8 2 0 3
...................................................CTCGAATAGCGTTGTGACTGA................................................................................................. 21 0 1 219.00 219 160 38 4 16 0 0 1
.....................................................CGAATAGCGTTGTGACTGAGG............................................................................................... 21 0 1 171.00 171 73 84 12 0 0 1 1
...................................................CTCGAATAGCGTTGTGACT................................................................................................... 19 0 1 120.00 120 83 34 3 0 0 0 0
.....................................................CGAATAGCGTTGTGACTGAGGTA............................................................................................. 23 0 1 114.00 114 44 59 7 0 1 1 2
..................................................TCTCGAATAGCGTTGTGAC.................................................................................................... 19 0 1 109.00 109 53 34 3 0 1 16 2
.....................................................CGAATAGCGTTGTGACTGAGGT.............................................................................................. 22 0 1 95.00 95 28 50 12 1 2 0 2
..................................................TCTCGAATAGCGTTGTGACTGAT................................................................................................ 23 1 1 58.00 58 14 10 0 34 0 0 0
..................................................TCTCGAATAGCGTTGTGACTGAG................................................................................................ 23 0 1 57.00 57 8 6 2 38 2 1 0
..................................................TCTCGAATAGCGTTGTGACTT.................................................................................................. 21 1 1 49.00 49 26 15 3 0 1 1 3
..................................................TCTCGAATAGCGTTGTGA..................................................................................................... 18 0 1 44.00 44 18 9 15 0 2 0 0
..................................................TCTCGAATAGCGTTGTGCCTGA................................................................................................. 22 1 1 42.00 42 6 0 0 34 1 0 1
..................................................TCTCGAATAGCGTTGTGACTGAA................................................................................................ 23 1 1 36.00 36 11 10 4 10 0 1 0
..................................................TCTCGAATAGCGTTGTGACTGT................................................................................................. 22 1 1 26.00 26 12 11 1 0 2 0 0
................................................................................................AGCGGCAAGGCTATTCCAGTAA................................................... 22 0 1 25.00 25 16 4 1 0 0 4 0
.............................................................................................CTCAGCGGCAAGGCTATTCCAG...................................................... 22 0 1 25.00 25 5 13 4 0 3 0 0
.....................................................CGAATAGCGTTGTGACTGAG................................................................................................ 20 0 1 22.00 22 3 15 3 0 0 0 1
..................................................TCTCGAATAGCTTTGTGACTGA................................................................................................. 22 1 1 20.00 20 17 1 0 0 1 1 0
..................................................TCTCGAATAGCTTTGTGACTG.................................................................................................. 21 1 1 16.00 16 14 1 1 0 0 0 0
..................................................TCTCGAATAGCGTGGTGACTGA................................................................................................. 22 1 1 16.00 16 2 0 0 14 0 0 0
..................................................TCTCGAATAGCGTTGTTACTGA................................................................................................. 22 1 1 16.00 16 10 1 1 0 4 0 0
..................................................TCTCGAATAGTGTTGTGACTGA................................................................................................. 22 1 1 15.00 15 0 0 0 15 0 0 0
..................................................TCTCGAATAGCGTTGTGACTTA................................................................................................. 22 1 1 15.00 15 11 1 0 0 3 0 0
....................................................TCGAATAGCGTTGTGACTG.................................................................................................. 19 0 1 15.00 15 10 3 1 0 1 0 0
....................................................TCGAATAGCGTTGTGACTGA................................................................................................. 20 0 1 14.00 14 13 0 1 0 0 0 0
...............................................................................................CAGCGGCAAGGCTATTCCAGTA.................................................... 22 0 1 14.00 14 6 6 2 0 0 0 0
..................................................TCTCAAATAGCGTTGTGACTG.................................................................................................. 21 1 1 14.00 14 10 1 1 0 0 1 1
..................................................TCTCGAATAGCGTTGTGACA................................................................................................... 20 1 1 12.00 12 3 6 3 0 0 0 0
..................................................TCTCAAATAGCGTTGTGACT................................................................................................... 20 1 1 12.00 12 7 4 0 0 0 1 0
..................................................TCTCAAATAGCGTTGTGACTGA................................................................................................. 22 1 1 11.00 11 7 3 0 0 0 0 1
..................................................TCTCGAATAGCGTTGTTACTG.................................................................................................. 21 1 1 11.00 11 1 1 1 0 7 0 1
..................................................TCTCGAATAGCTTTGTGACT................................................................................................... 20 1 1 10.00 10 10 0 0 0 0 0 0
..................................................TCTAGAATAGCGTTGTGACT................................................................................................... 20 1 1 10.00 10 7 2 1 0 0 0 0
.....................................................CGAATAGCGTTGTGACTGAGGTT............................................................................................. 23 1 1 10.00 10 3 6 1 0 0 0 0
..................................................TCTAGAATAGCGTTGTGACTG.................................................................................................. 21 1 1 10.00 10 7 0 3 0 0 0 0
..................................................TGTCGAATAGCGTTGTGACTGA................................................................................................. 22 1 1 10.00 10 5 0 0 0 0 5 0
..................................................TCTCGAATAGCGTTGTGACC................................................................................................... 20 1 1 9.00 9 1 2 0 0 0 6 0
..................................................TCTCGACTAGCGTTGTGACT................................................................................................... 20 1 1 9.00 9 9 0 0 0 0 0 0
....................................................TCGAATAGCGTTGTGACT................................................................................................... 18 0 1 9.00 9 3 4 2 0 0 0 0
.............................................................................................CTCAGCGGCAAGGCTATTCCA....................................................... 21 0 1 9.00 9 0 8 0 0 1 0 0
..................................................TCTCGAATCGCGTTGTGACTGA................................................................................................. 22 1 1 9.00 9 8 1 0 0 0 0 0
....................................................TCGAATAGCGTTGTGACTGAG................................................................................................ 21 0 1 9.00 9 8 1 0 0 0 0 0
...................................................CTCGAATAGCGTTGTGACTGTT................................................................................................ 22 2 1 9.00 9 0 6 3 0 0 0 0
..................................................TCTCGAATAGCGTTGTTACT................................................................................................... 20 1 1 9.00 9 3 1 3 0 2 0 0
..................................................TCTCGACTAGCGTTGTGACTG.................................................................................................. 21 1 1 9.00 9 9 0 0 0 0 0 0
...................................................CTCGAATAGCGTTGTGAC.................................................................................................... 18 0 1 8.00 8 7 1 0 0 0 0 0
..................................................TCTCGAATAGAGTTGTGACTGA................................................................................................. 22 1 1 8.00 8 6 0 0 0 0 2 0
..................................................TCTCGAATAGAGTTGTGACTG.................................................................................................. 21 1 1 8.00 8 7 0 1 0 0 0 0
..................................................TCTCGAATAGCGTTGGGACTGA................................................................................................. 22 1 1 8.00 8 8 0 0 0 0 0 0
..................................................TCCCGAATAGCGTTGTGACTGA................................................................................................. 22 1 1 8.00 8 2 0 1 0 0 5 0
................................................................................................AGCGGCAAGGCTATTCCAGT..................................................... 20 0 1 7.00 7 4 2 0 0 0 0 1
...................................................CTCGAATAGCGTTGTGACTT.................................................................................................. 20 1 1 7.00 7 2 5 0 0 0 0 0
..................................................TCTAGAATAGCGTTGTGACTGA................................................................................................. 22 1 1 7.00 7 5 0 2 0 0 0 0
...............................................................................................CAGCGGCAAGGCTATTCCAGT..................................................... 21 0 1 7.00 7 2 5 0 0 0 0 0
..............................................................................................TCAGCGGCAAGGCTATTCCAG...................................................... 21 0 1 7.00 7 2 3 1 0 1 0 0
..................................................TGTCGAATAGCGTTGTGACT................................................................................................... 20 1 1 7.00 7 1 6 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGCCTGAT................................................................................................ 23 2 1 7.00 7 0 0 0 7 0 0 0
.....................................................CGAATAGCGTTGTGACTG.................................................................................................. 18 0 1 7.00 7 3 3 1 0 0 0 0
..................................................TCTCGAATAGCGTTGTGCCTGAG................................................................................................ 23 1 1 7.00 7 0 0 0 7 0 0 0
...................................................CTCGAATAGCGTTGTGACTGT................................................................................................. 21 1 1 7.00 7 4 2 1 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACTGG................................................................................................. 22 1 1 7.00 7 5 0 1 0 1 0 0
..................................................TCTCGACTAGCGTTGTGACTGA................................................................................................. 22 1 1 7.00 7 7 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACTGTT................................................................................................ 23 2 1 7.00 7 1 4 2 0 0 0 0
...................................................CTCGAATAGCGTTGTGACTTT................................................................................................. 21 2 1 7.00 7 2 5 0 0 0 0 0
.....................................................CGAATAGCGTTGTGACTGA................................................................................................. 19 0 1 7.00 7 4 2 0 0 1 0 0
..................................................TCCCGAATAGCGTTGTGACTG.................................................................................................. 21 1 1 7.00 7 1 2 1 0 2 1 0
......................................................GAATAGCGTTGTGACTGAGG............................................................................................... 20 0 1 6.00 6 5 1 0 0 0 0 0
..................................................TCTCGAATATCGTTGTGACTGA................................................................................................. 22 1 1 6.00 6 5 0 1 0 0 0 0
..................................................TCTCGAATAGCGTTGTGAA.................................................................................................... 19 1 1 6.00 6 3 3 0 0 0 0 0
..................................................TATCGAATAGCGTTGTGACTG.................................................................................................. 21 1 1 6.00 6 0 2 4 0 0 0 0
..................................................TCTCTAATAGCGTTGTGACT................................................................................................... 20 1 1 6.00 6 2 0 4 0 0 0 0
..................................................TCTCGAATAGCGTTGTGCCTG.................................................................................................. 21 1 1 6.00 6 4 0 1 0 1 0 0
..................................................TCTCGAATAGCGTTTTGACTGA................................................................................................. 22 1 1 6.00 6 5 0 0 0 1 0 0
.................................................................................................GCGGCAAGGCTATTCCAGTAAA.................................................. 22 1 1 5.00 5 4 0 0 0 0 1 0
..................................................TCTCGAATAGCGTTGTGT..................................................................................................... 18 1 1 5.00 5 1 3 0 0 0 0 1
..................................................TCTCGAATAGCGTTGTGACTGAC................................................................................................ 23 1 1 5.00 5 1 1 0 3 0 0 0
..................................................CCTCGAATAGCGTTGTGACTG.................................................................................................. 21 1 1 5.00 5 4 0 1 0 0 0 0
..................................................TCTCGAATAGCGTTGTGCCT................................................................................................... 20 1 1 5.00 5 3 0 0 1 0 0 1
..................................................TCTCGAATAGCGTTGCGACTGA................................................................................................. 22 1 1 5.00 5 1 0 2 0 2 0 0
..................................................TCTCGAATAGTGTTGTGCCTGA................................................................................................. 22 2 1 5.00 5 0 0 0 5 0 0 0
..................................................TTTCGAATAGCGTTGTGACTGA................................................................................................. 22 1 1 5.00 5 2 2 0 0 0 1 0
..................................................TCTCGAATAGCGTTTTGACTG.................................................................................................. 21 1 1 5.00 5 4 0 0 0 1 0 0
..................................................ACTCGAATAGCGTTGTGACTGA................................................................................................. 22 1 1 5.00 5 3 1 0 0 0 1 0
..................................................TCTCGAATCGCGTTGTGACTG.................................................................................................. 21 1 1 5.00 5 5 0 0 0 0 0 0
..................................................TCTCTAATAGCGTTGTGACTGA................................................................................................. 22 1 1 5.00 5 1 1 2 1 0 0 0
..................................................TCTCGAATAGAGTTGTGACT................................................................................................... 20 1 1 5.00 5 1 1 2 0 1 0 0
..................................................TCTTGAATAGCGTTGTGACT................................................................................................... 20 1 1 5.00 5 1 0 2 0 1 1 0
..................................................TCTCGAATACCGTTGTGACT................................................................................................... 20 1 1 5.00 5 3 2 0 0 0 0 0
..............................................................................................TCAGCGGCAAGGCTATTCCAGT..................................................... 22 0 1 5.00 5 2 3 0 0 0 0 0
..................................................TCTCGAATATCGTTGTGACT................................................................................................... 20 1 1 4.00 4 1 1 2 0 0 0 0
....................................................TCGAATAGCGTTGTGACTGAGG............................................................................................... 22 0 1 4.00 4 2 2 0 0 0 0 0
..................................................TCTCGAATAGCGTTGGGACTG.................................................................................................. 21 1 1 4.00 4 3 0 0 0 1 0 0
................................................................................................AGCGGCAAGGCTATTCCAGTA.................................................... 21 0 1 4.00 4 1 2 0 0 0 1 0
...................................................CTCAAATAGCGTTGTGACTGAG................................................................................................ 22 1 1 4.00 4 2 1 1 0 0 0 0
..................................................TCTCGAATAGCGTTTTGACT................................................................................................... 20 1 1 4.00 4 3 0 0 0 1 0 0
..................................................TCTCGAATCGCGTTGTGACT................................................................................................... 20 1 1 4.00 4 4 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGAT.................................................................................................... 19 1 1 4.00 4 4 0 0 0 0 0 0
.....................................................CGAATAGCGTTGTGACTGAGGTTT............................................................................................ 24 2 1 4.00 4 1 3 0 0 0 0 0
..................................................TCCCGAATAGCGTTGTGACT................................................................................................... 20 1 1 4.00 4 1 0 2 0 0 1 0
..................................................TCTCGAATAGCGTTGTGACTGATT............................................................................................... 24 2 1 4.00 4 1 3 0 0 0 0 0
.................................................ATCTCGAATAGCGTTGTGACTG.................................................................................................. 22 0 1 4.00 4 1 1 0 0 1 0 1
.....................................................CTAATAGCGTTGTGACTGAGGTA............................................................................................. 23 1 1 4.00 4 0 3 0 0 0 1 0
..................................................TCTCGAATAGCGTTGTGGCTGA................................................................................................. 22 1 1 4.00 4 1 2 0 0 1 0 0
..................................................CCTCGAATAGCGTTGTGACTGA................................................................................................. 22 1 1 4.00 4 1 1 0 0 0 1 1
..................................................TCTCGAATAGCATTGTGACT................................................................................................... 20 1 1 3.00 3 1 2 0 0 0 0 0
..................................................TGTCGAATAGCGTTGTGACTG.................................................................................................. 21 1 1 3.00 3 1 2 0 0 0 0 0
.....................................................CGAATAGCGTTGTGACTGAGGTAT............................................................................................ 24 1 1 3.00 3 1 2 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGCCTGAA................................................................................................ 23 2 1 3.00 3 0 0 0 3 0 0 0
.....................................................CGAATAGCGTTGTGACTGTT................................................................................................ 20 2 1 3.00 3 1 2 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACTTT................................................................................................. 22 2 1 3.00 3 2 1 0 0 0 0 0
..................................................TCTCGAATAGCGTTCTGACTGA................................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0
..................................................TCTCGTATAGCGTTGTGACTGA................................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0
.................................................................................................GCGGCAAGGCTATTCCAGTAA................................................... 21 0 1 3.00 3 2 0 0 0 0 1 0
..................................................TCTCGAATAGCATTGTGACTG.................................................................................................. 21 1 1 3.00 3 2 1 0 0 0 0 0
..................................................TCTCGGATAGCGTTGTGACTG.................................................................................................. 21 1 1 3.00 3 1 0 1 0 0 1 0
..................................................TCTCGAATAGCGTTGTCACTG.................................................................................................. 21 1 1 3.00 3 1 2 0 0 0 0 0
..................................................GCTCGAATAGCGTTGTGACTG.................................................................................................. 21 1 1 3.00 3 2 1 0 0 0 0 0
..................................................TCTTGAATAGCGTTGTGACTG.................................................................................................. 21 1 1 3.00 3 0 1 1 0 0 1 0
...................................................CTCGAATAGCGTTGTGACTGAGT............................................................................................... 23 1 1 3.00 3 2 1 0 0 0 0 0
..................................................TCTTGAATAGCGTTGTGACTGA................................................................................................. 22 1 1 3.00 3 0 1 0 0 0 2 0
..................................................TCTCGAATAGCGTTGAGACTGA................................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACTGAAA............................................................................................... 24 2 1 3.00 3 1 2 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTCACTGA................................................................................................. 22 1 1 3.00 3 2 1 0 0 0 0 0
..................................................TCTCGAATAGCGGTGTGACT................................................................................................... 20 1 1 3.00 3 1 1 1 0 0 0 0
..................................................TCTCGAATAGCGTTGTCACT................................................................................................... 20 1 1 3.00 3 2 0 0 0 0 0 1
..................................................TCTCGAATAGCGTTGTGACTAA................................................................................................. 22 1 1 3.00 3 2 0 0 0 0 0 1
..................................................TCTCGAATAGCGTTGTAACTGA................................................................................................. 22 1 1 3.00 3 1 0 1 0 1 0 0
..................................................TCTCGAATACCGTTGTGACTG.................................................................................................. 21 1 1 3.00 3 2 1 0 0 0 0 0
..................................................TCTCGAATAGCGTTGGGACT................................................................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGCGACT................................................................................................... 20 1 1 3.00 3 1 1 1 0 0 0 0
..................................................TCTCGAATAGCGTTGAGACT................................................................................................... 20 1 1 3.00 3 2 0 1 0 0 0 0
..................................................TCTCGAATAGCGTTGTGTT.................................................................................................... 19 2 3 2.33 7 4 2 1 0 0 0 0
..................................................TCTGGAATAGCGTTGTGACTG.................................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACTGGA................................................................................................ 23 2 1 2.00 2 1 1 0 0 0 0 0
...................................................CTCGAATAGCTTTGTGACTG.................................................................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0
.....................................................CGAATAGCGTTGTGATTGAG................................................................................................ 20 1 1 2.00 2 0 2 0 0 0 0 0
.................................................CTCTCGAATAGCGTTGTGACTG.................................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGAGTG.................................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
......................................................GAATAGCGTTGTGACTGAGGTA............................................................................................. 22 0 1 2.00 2 1 1 0 0 0 0 0
..................................................TCTCGAATAGCGGTGTGCCTG.................................................................................................. 21 2 1 2.00 2 2 0 0 0 0 0 0
..................................................ACTCGAATAGCGTTGTGACTG.................................................................................................. 21 1 1 2.00 2 1 0 0 0 0 1 0
..................................................TTTCGAATAGCGTTGTGACT................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0
..................................................GCTCGAATAGCGTTGTGACTGA................................................................................................. 22 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TCTCGAACAGCGTTGTGACT................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TCTACAATAGCGTTGTGACTG.................................................................................................. 21 2 1 2.00 2 2 0 0 0 0 0 0
.....................................................CGAATAGCGTTGTGACTGTTT............................................................................................... 21 3 1 2.00 2 0 2 0 0 0 0 0
..................................................TCTAGAATAGCGTTGTGACTGAA................................................................................................ 23 2 1 2.00 2 0 0 1 1 0 0 0
...................................................CTCGAATAGCGTTTTGACTGAG................................................................................................ 22 1 1 2.00 2 0 2 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACTCA................................................................................................. 22 1 1 2.00 2 0 0 2 0 0 0 0
..................................................TCTCGAGTAGCGTTGTGACT................................................................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGGCT................................................................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TCTCGATTAGCGTTGTGACTGA................................................................................................. 22 1 1 2.00 2 0 1 0 0 1 0 0
..................................................TCTCGAATAGCGTTGCGACTG.................................................................................................. 21 1 1 2.00 2 1 1 0 0 0 0 0
...................................................CTCAAATAGCGTTGTGACTGA................................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
.................................................CTCTCGAATAGCGTTGTGACTGA................................................................................................. 23 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TCTCGGATAGCGTTGTGACTGA................................................................................................. 22 1 1 2.00 2 0 0 0 0 1 1 0
...................................................CTCGAATAGCGTTGTGCCTGA................................................................................................. 21 1 1 2.00 2 0 0 0 2 0 0 0
.................................................GTCTCGAATAGCGTTGTGACT................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
...................................................CTCGAATAGCGTTGTGACTGTTT............................................................................................... 23 3 1 2.00 2 0 2 0 0 0 0 0
.............................................................................................CTCAGCGGCAAGGCTATTCCAGT..................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0
.................................................................................................GCGGCAAGGCTATTCCAGTAAT.................................................. 22 1 1 2.00 2 1 0 0 0 1 0 0
.....................................................CGAATAGCGTTGTGACTGAAG............................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
...................................................CTCGAATAGAGTTGTGACTGA................................................................................................. 21 1 1 2.00 2 0 0 0 2 0 0 0
..................................................TCGCGAATAGCGTTGTGACTGA................................................................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0
...................................................CTCGAATAGCGTTGTTACTGAG................................................................................................ 22 1 1 2.00 2 1 0 1 0 0 0 0
..................................................TCTCGAATAGCGTCGTGACT................................................................................................... 20 1 1 2.00 2 1 0 1 0 0 0 0
...................................................CTCGAATAGCGTTGTGACTGG................................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
...................................................CTCGAATAGCGTTGTGAATGAG................................................................................................ 22 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TCTCGAATAGCGCTGTGACTGA................................................................................................. 22 1 1 2.00 2 0 1 0 0 1 0 0
..................................................TCTCGAATAGCCTTGTGACTG.................................................................................................. 21 1 1 2.00 2 1 0 0 0 1 0 0
..................................................TCTCGAACAGAGTTGTGACTG.................................................................................................. 21 2 1 2.00 2 2 0 0 0 0 0 0
......................................................GAATAGCGTTGTGACTGAG................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACTGATGA.............................................................................................. 25 2 1 2.00 2 0 0 0 0 2 0 0
..................................................TCTCGAATAGCGTTATGACTGA................................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0
..................................................TGTCGAATAGCGTTGTGACC................................................................................................... 20 2 1 2.00 2 0 0 0 0 0 2 0
..................................................TCTCGAATAGCGTTGTGACTGC................................................................................................. 22 1 1 2.00 2 0 1 0 1 0 0 0
...................................................CTCGAATAGCGTTGTGACTTTT................................................................................................ 22 3 1 2.00 2 0 2 0 0 0 0 0
..................................................GCTCGAATAGCGTTGTGACT................................................................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0
..............................................................................................TCAGCGGCAAGGCTATTCCAGTT.................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TCTCGAATAGTGTTGTGACTG.................................................................................................. 21 1 1 2.00 2 1 0 1 0 0 0 0
..................................................TCTCTAATAGCGTTGTGACTG.................................................................................................. 21 1 1 2.00 2 0 0 2 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACTA.................................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
...............................................................................................CAGCGGCAAGGCTATTCCAGTT.................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGATT................................................................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TATCGAATAGCGTTGTGACTGA................................................................................................. 22 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TCGCGAATAGCGTTGTGACT................................................................................................... 20 1 1 2.00 2 0 2 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGAATG.................................................................................................. 21 1 1 2.00 2 0 0 1 0 1 0 0
.................................................TTCTCGAATAGCGTTGTGACTG.................................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TCTCGAATAGCGTCGTGACTG.................................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TCTCGTATAGCGTTGTGACT................................................................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TCTCGAATAGCGGTGTGACTGA................................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
...................................................CGCGAATAGCGTTGTGACTG.................................................................................................. 20 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACGG.................................................................................................. 21 1 1 2.00 2 0 1 0 0 1 0 0
..................................................TCTCGAATAGCGTTGTGACTGATG............................................................................................... 24 1 1 2.00 2 0 0 0 0 2 0 0
..................................................TATCGAATAGCGTTGTGACT................................................................................................... 20 1 1 2.00 2 0 0 2 0 0 0 0
..................................................TCTCGAATAGCGGTGTGCCTGA................................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACTC.................................................................................................. 21 1 1 2.00 2 1 0 0 0 0 0 1
..................................................TCTCGAATAGCGTTGTGTA.................................................................................................... 19 2 2 1.50 3 0 3 0 0 0 0 0
..................................................TCTTGAATAGCGGTGTGACT................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0
...................................................CTCGAATAGCGCTGTGACTGAG................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
...................................................CTCGAATAACGTTGTGACTGAG................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 1
.........................................................................................TCTACTCAGCGGCAAGGCTAT........................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................CGAATAGCGTTGTGACTGAGGAA............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
...................................................CTCGAATAGCGTTTTGACT................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................TCAGCGGCAAGGCTATTCCA....................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...................................................CTCGAATAGCGGTGTGACTGA................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................AGCGGCCAGGCTATTCCAG...................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................CGACTAGCGTTGTGACTGAGGTT............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATAGCGCTGTGACTG.................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................AGAATAGCGTTGTGACTGAGG............................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
..................................................TCTCCAATAGCGTTGTGACTG.................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TCTCGAGTAGCGTTGTGACTGA................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATGGCGTTGTGCCTGA................................................................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0
............................................................................................ACTCAGCGGCAAGGCTATTCCAG...................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
..................................................TCTCGAATCGAGTTGTGACGGA................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGACTAGCGTTGTTACTGA................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................CAGCGGCAAGGCTATTCCTTT..................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................GCGGCAAGGCTATTCCAGTA.................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...................................................CTCGAATAGCGTTGTGGCTG.................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGGGTG.................................................................................................. 21 2 1 1.00 1 0 0 0 0 1 0 0
...............................................GCGTCTCGAATAGCGTTGTGACTGA................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATAGGGTTGTGACTGA................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................CTCGAATTGCGTTGTGACT................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTTTTACTGA................................................................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0
...................................................CTTGAATAGCGTTGTGACTGA................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACG................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTCTGACTG.................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................CTCAGCGGCAAGCCTATTTCA....................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0
..................................................TCTCGAATAGTGTAGTGACTGA................................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0
..................................................TCTCGAATAGTGTGGTGACTGA................................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................CTCAGCTGCAAGGCTATTCCAG...................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................TCAGCGACAAGGCTATTCCAG...................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
....................................................CCGAATAGCGTTGTGACTG.................................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................AATAGCGTTGTGACTGAGGTA............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................TCTGAATAGCGTTGTGACTGA................................................................................................. 21 3 1 1.00 1 0 1 0 0 0 0 0
...................................................CTCGAATAGCGTTGTGACTGAT................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TCTCGTATAGCGTTGTGACTG.................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................CGAATTGCGTTGTGACTGAGGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATAGCGTCGTGACTGA................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0
..................................................TCTCGAATAGAGTTGTGACTT.................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
...................................................CTCGAATAGCGTAGTGACTG.................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................GGTAACTGCGCATCGAATCTACTC......................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
...................................................CTCAAATAGCGTTGTGACTGGG................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTTTGACTGAT................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTAACTG.................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
...................................................CTCGAATAGCGTTGTGACTTAG................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................CTCGAATAGCGTTATGACTGAG................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................ACTCGAATAGCGTTGTGACC................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 1 0
.....................................................CGAATAGCGTTGTGTCTGAGG............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAACAGCGTTGTGAATGA................................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0
........................................................ATAGCGTTGTGACTGAGG............................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
....................................................TCGAATAGCTTTGTGACTGA................................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0
..................................................TCTCGAATAGAGCTGTGACTGA................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................GCGGCAAGGCTATTCCAGT..................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
..................................................TCTCGAATAGCCTTGTGACTGA................................................................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0
...................................................CTCGAATAGCTTTGTGGCTGAG................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTAGTATAGCGTTGTGACT................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0
.....................................................CGAATAGCGTTGTGACTGATGTA............................................................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0
...................................................CTCGAATAGCGTTGTTACTG.................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TCTCAAATAGCGTTGTGACTTA................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTAGAATAGCTTTGTGACT................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0
...................................................CTCGAATAGCATTGTGACTGA................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
......................................................GAATAGCGTCGTGACTGAGGT.............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................TGTGACTGAGGTAACTGCGC...................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0
.....................................................CGAATAACGTTGTGACTGAGGTT............................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
...................................................ATCGAATAGCGTTGTGACTG.................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTGACTGTA................................................................................................ 23 2 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................TCAGCGGCAAGGCTATTCCAGTAA................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
...................................................CTCGAATAGCGTTGTGAAT................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................CGAATAGCGTTGTGACTGAGT............................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CCTCGAATAGCGTTCTGACTGA................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
...................................................CTCGAATAGCCTTGTGACTGAG................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAACAGAGTTGTGACTGT................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................ACTCGAATAGCGTTGTGACT................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................CAAATAGCGTTGTGACTGAGG............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CCTCGAATAGCGTTGTGACT................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTTACTGTC................................................................................................ 23 3 1 1.00 1 0 0 0 0 1 0 0
...................................................CTCAAATAGCGTTGTGACTG.................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAAGAGCGTTGTGACTG.................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................GCTCGAATAGCGTTGTGACTT.................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATAGCATTGTGACTGA................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................CGCATAGCGCTGTGACTGAGGT.............................................................................................. 22 2 1 1.00 1 0 0 0 0 0 0 1
....................................................TCGAATAGCGTTGTGACTTAG................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGAATAGCGTTGTTACTT.................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGGATAGCGTTGTGACT................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0
..................................................TCTCGAATAGGGTTGTGCCTGA................................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0
.....................................................CGAATAGCGTTTTGACTGAGGTA............................................................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0
..................................................TCTCGAATAGCGGTGTGACTG.................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0
..................................................TCTCGAATAACGTTGTGCCTGAG................................................................................................ 23 2 1 1.00 1 0 0 0 1 0 0 0
...................................................CTCGAATAGAGTTGTGACTGAG................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0
.....................................................CGAATAGCTTTGTGACTGAGGTA............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGCATAGCGTTGTGACTG.................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................................AGAGGCAAGGCTATTCCAGTAA................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0
..................................................TCTCGAATAGCGTTGTTAC.................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
....................................................TCGCATAGCGTTGTGACTGAG................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
...................................................CTCGAATCGCGTTGTGACTGAG................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCTCGCATACCGTTTTGACTGA................................................................................................. 22 3 1 1.00 1 0 0 0 0 1 0 0

Anti-sense strand reads

TGTTCAGCCTTTTCAGCATGAAAATCTATGCTCTATGGATTCTAATGGGTAGAGCTTATCGCAACACTGACTCCATTGACGCGTAGCTTAGATGAGTCGCCGTTCCGATAAGGTCATTCCAATAAAACCCGGTCGCTGAGTTGCTGGCCTTTTGTCCCCACAATTGATA

************************************.((((((((.(((...((.(((((((.((((..(((((.......((...))......)))))..)))).))))))).))...))).))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V040

embryo
.........TTTTCACCATCAGAATCTATG........................................................................................................................................... 21 3 4 0.25 1 1
.........TTTTCATCATGAAAATGTA............................................................................................................................................. 19 2 6 0.17 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4929:18305680-18305848 - der_115 confident ACAAGTCGGAAAAGTCGT--ACTTTTAG--A-------------T-----AC------GA--G------ATA---CCTAAGATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAATCTACTCAGCGGCAAGGCTATTCCAGTAAGGTTATTTTGGGCC-A---GCGACTCAACGACC-----GGAAAACAGGGGTGTT--AACTAT
droYak3 2L:16988525-16988699 + dya_15 confident AGAACTCGGAAAAGTCGT--TGTTTTAG--A-------------A-----ACGCAGAGGA--C------ACA---CCTAAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGTATCTACTCAGCGGCGAAGCTATTCCAGTAAGGTTATTTTGGGCC-A---GCGACTTTACGACC-----GGAAAACAAGGGTGTT--AACTAT
droSec2 scaffold_1:1974051-1974225 + dse_15 confident AGTAGTTGGATAGGTCGT--GGTTTTAG--C-------------C-----ACGCAGAGGA--C------ACA---CCTGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCCAGTAAGGTTGTTTTGGGCC-A---GCGACTTTATGACC-----GGAAAACAAGGGTGTT--AACTAT
droSim2 2r:5147170-5147344 + dsi-mir-986 Known_mirbase AGGAGTCGGATAGGTCGT--GGTTTTAG--C-------------C-----ACGCAGAGGA--C------ACA---CCTGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCCAGTAAGGTTGTTTTGGGCC-A---GCGACTTTATGACC-----GGAAAACAAGGGTGTT--AACTAT
dm3 chr2R:4332449-4332623 + dme-mir-986 Known_mirbase AGGAGCCGGAAAAGTCGT--AGCGTTAG--C-------------C-----ACGCAGAGGA--C------ACA---CCTGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCAAGTAAGGTTATTTTGGGCC-A---GCGACTTTACGACC-----GGAAAACAAGGGTGTT--AACTAT
droEug1 scf7180000407691:192715-192881 + AGAAAAC-----------GTTA----A-AA---------------AATA-ACCGAGAGTA--C------ACA---CCCATAATCACCCATCTCGAATAGCGTTGTGACTGAGT-TAACTGCCCATTAAATCGACTCAGCGGCAACGCTATTCCAGTTAGGTTATTTTGGTCA-A---GCGACTTTACGACC-----GGAAAATTGGGGTGTTGAAAATAT
droBia1 scf7180000302291:2218546-2218697 + GAATGCC-----------GGTA----G-A---------------------------AGGA--A------ACC---CTCGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGTATTGAATCGACTCAGCGACAAGGCTATTCAAGTTAGGTTATTTTGGGCC-A---GCGACT--ACGACC-----GAAACATTAGGCTGTC--AGCTAT
droTak1 scf7180000415627:215797-215973 + AAGCAA-----AATTCG-CATA----G-CT-CTCG------GCA-AAAC-AAGGAGACGA--T------ACA---CCCGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAAACGACTCAGCGGCAACGCTATTTCAGATAGGTCATTTTGGGCC-A---GCGACTTTACGACC-----GGAAAATTGTTCTGCT--AACTAT
droEle1 scf7180000491240:1158467-1158630 + AAGTGTC-----------CATG----G-CA---------------CAAATCCGAAGGGAA--T------GCT---CCCGAAACTACCCATTTCGAATGGCGTTGTGACTGATG-TAACTGCGCATCGAATTAGCTCAGCGACAACGCTAATCCAGTTGGGTTACTTGGGGCC-A---GCGACTTTACAACC-----GGAAAATTGGGCTGTT--AACT--
droRho1 scf7180000770177:457570-457734 + AAATGTC-----------CGTG----G-CA---------------AAAA-ACGGATTGAA--T------ACT---CCCGAAATCACCCATCTCGAATAGCGTTGTGACTGAGG-TAAGTGCGCTCCGAGTTGACTCAGCGGCAACGCTATTCCAGTTAGGTTGTTTTGGGTC-A---GCGACTTTACGACC-----GGAAGGTTAGGGTGCT--AACTAT
droFic1 scf7180000453851:2006739-2006904 - AAAAGCC-----------ACAA----G-CA-GG------------AAAA-ACGGAGAGGA--T------AC----CCCGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAATCTACTCAGCGGCAACGCTATTCCAGGTGGGTTATTTCGGGCC-A---GCGACTTTACGACC-----GAAAAATTTTGACGTT--AACTTT
droKik1 scf7180000302277:185624-185780 + AGAAAA---------------------------------------------CGCCGAGGAAAC------ACCCTTTCCGGAACGACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGATTCAAACTGACTCAGAGGCAGCGCTATTCCAGTGAGGTCGTTCTGGGCC-A---GCCACTTTACAACC-----AGAATGAATGTGTGCT--AACTGT
droAna3 scaffold_13266:1670173-1670313 - dan_13 confident GAAAAGC-----------CTTC--TTTG--G-------------T-----TTCCTGAGGA--T------ACG---TCCAAAATGACTCATCTCGAATAGCGTTGTGACTGATGGTA------TTTAAATATAAATCCGAGACAATGCTATTCTTGTAAAGTCATCTTGACCA-A---GCAACTTTT-----------------------TCT--AATCGA
droBip1 scf7180000396730:2663901-2664045 - GTAAAAG-------GCAT--TCTTTGT--AA-------------AAAGA-TTCCAGAGGA--T------ACA---CCCAAAATGACTCATCTCGAATAGCGTTGTGACTGATG-TG------TTAAAGAATAAATCCGAGACAATGCTATTCTTGTAAAGTCATCTTGACCA-A---GCAACTATT----------------------------CATAAT
dp5 3:2308589-2308747 + dps-mir-986 Known_mirbase CGAATCTC----------CTTA----T-CT-CCTGAA-------------TC----GGAG--T------ACG---ACTGAAACAACCCGTCTCGAATAGCGTTGTGACTGAT---GACTGCATTTGTAATTTTCTCAGCGGCAGTGCTATTCCAGTTGGGTTGTTTGCGGCCAAACAACAACTATAAAAAC-----AGAAA-CAG------T--GCATAG
droPer2 scaffold_2:2480047-2480205 + dpe_21 confident CGAATCTC----------CTTG----T-CT-CCTGAA-------------TC----GGAG--T------ACG---ACTGAAACAACCCGTCTCGAATAGCGTTGTGACTGAT---GACTGCATTTGTAATTTTCTCAGCGGCAGTGCTATTCCAGTTGGGTTGTTTGCGGCCAAACAACAACTATAAAAAC-----AGAAA-CAG------T--GCATAG
droWil2 scf2_1100000004513:3160991-3161160 - dwi_121 confident AAAAATA-----------TTTA----C-----------------T-----ACACAAAGTGAACAGTTCGATG---ACTTAAATGCCCAATCTCGAATAGCGTTGTAACTGATG---ATTGTGAT-ATGAGAGAGTCAGCCACTATGCTATACGAGGTGGGGCATTTGTGGGTAA---ACAACCAAATTACGTGAACGTA-TACAACGCATAT--AACTAC
droVir3 scaffold_12875:9398658-9398662 + ATAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:17707872-17708036 - dmo_22 confident ATTAGTTGAAAAG-TTT-CAAA----G-TT-GTTG------GCG-AA---CTTTCAATGG-CTCATTTAACT---GGCTAATTGCCTTCTCTCGAATTGCATTATGGCCGATG-ACACAATTCTGCAAAATC-ATCAGTTGGAATGCCATTCGGGTCAAGGCATTTACGAATCG---CCA-----ACGAGC-----AGCAA------------------A
droGri2 scaffold_15245:2671274-2671427 + dgr_11 confident AGTTTAT-----------T-------A-CT----GAAATGG----AAAG-TTGCAA--AG--T---TTGAAT---GGCTTATTGCCTTTTCTCGAATTGCATTGTGACTGATG-AAAAT----TTAGAAATTCATCAGTTAAAATGCCATTCGAGTTAAGGCACTTATG-----------CATTAACAACC-----AAAAATCATTTGTATT--A-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
ACAAGTCGGAAAAGTCGT--ACTTTTAG--A-------------T-----AC------GA--G------ATA---CCTAAGATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAATCTACTCAGCGGCAAGGCTATTCCAGTAAGGTTATTTTGGGCC-A---GCGACTCAACGACC-----GGAAAACAGGGGTGTT--AACTATSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................TCTCGAATAGCGTTGTGACTG..............................................................................................................2112879.00287915461943879442400
.........................................................................................TCTCGAATAGCGTTGTGACTGA.............................................................................................................2212833.002833156412635132676157143
.........................................................................................TCTCGAATAGCGTTGTGACT...............................................................................................................2012625.002625119941391710243023
..........................................................................................CTCGAATAGCGTTGTGACTG..............................................................................................................201323.00323200030110100
..........................................................................................CTCGAATAGCGTTGTGACTGAG............................................................................................................221303.00303144032123238
..........................................................................................CTCGAATAGCGTTGTGACTGA.............................................................................................................211219.0021916001038416
............................................................................................CGAATAGCGTTGTGACTGAGG-..........................................................................................................211171.001717311084120
..........................................................................................CTCGAATAGCGTTGTGACT...............................................................................................................191120.00120830003430
............................................................................................CGAATAGCGTTGTGACTGAGG-TA........................................................................................................231114.00114441215970
.........................................................................................TCTCGAATAGCGTTGTGAC................................................................................................................191109.001095316213430
............................................................................................CGAATAGCGTTGTGACTGAGG-T.........................................................................................................22195.00952802250121
.........................................................................................TCTCGAATAGCGTTGTGACTGAT............................................................................................................23158.00581400010034
.........................................................................................TCTCGAATAGCGTTGTGACTGAG............................................................................................................23157.005781026238
.........................................................................................TCTCGAATAGCGTTGTGACTT..............................................................................................................21149.0049261311530
.........................................................................................TCTCGAATAGCGTTGTGA.................................................................................................................18144.0044180029150
.........................................................................................TCTCGAATAGCGTTGTGACTGAA............................................................................................................23136.00361110010410
.........................................................................................TCTCGAATAGCGTTGTGACTGT.............................................................................................................22126.0026120021110
........................................................................................................................................AGCGGCAAGGCTATTCCAGTAA..............................................................22125.002516400410
.....................................................................................................................................CTCAGCGGCAAGGCTATTCCAG.................................................................22125.002550031340
............................................................................................CGAATAGCGTTGTGACTGAG............................................................................................................20122.002230101530
...........................................................................................TCGAATAGCGTTGTGACTG..............................................................................................................19115.001510001310
...........................................................................................TCGAATAGCGTTGTGACTGA.............................................................................................................20114.001413000010
.......................................................................................................................................CAGCGGCAAGGCTATTCCAGTA...............................................................22114.00146000620
.........................................................................................TCTCGAATAGCGTTGTGACA...............................................................................................................20112.00123000630
............................................................................................CGAATAGCGTTGTGACTGAGG-TT........................................................................................................23110.00103000610
.........................................................................................TCTCGAATAGCGTTGTGACC...............................................................................................................2019.0091600200
...........................................................................................TCGAATAGCGTTGTGACT...............................................................................................................1819.0093000420
.....................................................................................................................................CTCAGCGGCAAGGCTATTCCA..................................................................2119.0090001800
...........................................................................................TCGAATAGCGTTGTGACTGAG............................................................................................................2119.0098000100
..........................................................................................CTCGAATAGCGTTGTGACTGTT............................................................................................................2219.0090000630
..........................................................................................CTCGAATAGCGTTGTGAC................................................................................................................1818.0087000100
........................................................................................................................................AGCGGCAAGGCTATTCCAGT................................................................2017.0074010200
..........................................................................................CTCGAATAGCGTTGTGACTT..............................................................................................................2017.0072000500
.......................................................................................................................................CAGCGGCAAGGCTATTCCAGT................................................................2117.0072000500
......................................................................................................................................TCAGCGGCAAGGCTATTCCAG.................................................................2117.0072001310
............................................................................................CGAATAGCGTTGTGACTG..............................................................................................................1817.0073000310
..........................................................................................CTCGAATAGCGTTGTGACTGT.............................................................................................................2117.0074000210
.........................................................................................TCTCGAATAGCGTTGTGACTGG.............................................................................................................2217.0075001010
.........................................................................................TCTCGAATAGCGTTGTGACTGTT............................................................................................................2317.0071000420
..........................................................................................CTCGAATAGCGTTGTGACTTT.............................................................................................................2117.0072000500
............................................................................................CGAATAGCGTTGTGACTGA.............................................................................................................1917.0074001200
.............................................................................................GAATAGCGTTGTGACTGAGG-..........................................................................................................2016.0065000100
.........................................................................................TCTCGAATAGCGTTGTGAA................................................................................................................1916.0063000300
.........................................................................................................................................GCGGCAAGGCTATTCCAGTAAA.............................................................2215.0054100000
.........................................................................................TCTCGAATAGCGTTGTGT.................................................................................................................1815.0051010300
.........................................................................................TCTCGAATAGCGTTGTGACTGAC............................................................................................................2315.0051000103
......................................................................................................................................TCAGCGGCAAGGCTATTCCAGT................................................................2215.0052000300
...........................................................................................TCGAATAGCGTTGTGACTGAGG-..........................................................................................................2214.0042000200
........................................................................................................................................AGCGGCAAGGCTATTCCAGTA...............................................................2114.0041100200
.........................................................................................TCTCGAATAGCGTTGTGAT................................................................................................................1914.0044000000
............................................................................................CGAATAGCGTTGTGACTGAGG-TTT.......................................................................................................2414.0041000300
.........................................................................................TCTCGAATAGCGTTGTGACTGATT-..........................................................................................................2414.0041000300
........................................................................................ATCTCGAATAGCGTTGTGACTG..............................................................................................................2214.0041011100
............................................................................................CGAATAGCGTTGTGACTGAGG-TAT.......................................................................................................2413.0031000200
............................................................................................CGAATAGCGTTGTGACTGTT............................................................................................................2013.0031000200
.........................................................................................TCTCGAATAGCGTTGTGACTTT.............................................................................................................2213.0032000100
.........................................................................................................................................GCGGCAAGGCTATTCCAGTAA..............................................................2113.0032100000
..........................................................................................CTCGAATAGCGTTGTGACTGAGT-..........................................................................................................2313.0032000100
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA-..........................................................................................................2413.0031000200
.........................................................................................TCTCGAATAGCGTTGTGTT................................................................................................................1932.3374000210
.........................................................................................TCTCGAATAGCGTTGTGACTGGA............................................................................................................2312.0021000100
.............................................................................................GAATAGCGTTGTGACTGAGG-TA........................................................................................................2212.0021000100
............................................................................................CGAATAGCGTTGTGACTGTTT-..........................................................................................................2112.0020000200
..........................................................................................CTCGAATAGCGTTGTGACTGTTT-..........................................................................................................2312.0020000200
.....................................................................................................................................CTCAGCGGCAAGGCTATTCCAGT................................................................2312.0020000200
.........................................................................................................................................GCGGCAAGGCTATTCCAGTAAT.............................................................2212.0021001000
..........................................................................................CTCGAATAGCGTTGTGACTGG.............................................................................................................2112.0022000000
.............................................................................................GAATAGCGTTGTGACTGAG............................................................................................................1912.0022000000
.........................................................................................TCTCGAATAGCGTTGTGACTGC.............................................................................................................2212.0020000101
..........................................................................................CTCGAATAGCGTTGTGACTTTT............................................................................................................2212.0020000200
......................................................................................................................................TCAGCGGCAAGGCTATTCCAGTT...............................................................2312.0021000100
.........................................................................................TCTCGAATAGCGTTGTGACTA..............................................................................................................2112.0022000000
.......................................................................................................................................CAGCGGCAAGGCTATTCCAGTT...............................................................2212.0022000000
.........................................................................................TCTCGAATAGCGTTGTGACTC..............................................................................................................2112.0021010000
.........................................................................................TCTCGAATAGCGTTGTGTA................................................................................................................1921.5030000300
.................................................................................................................................TCTACTCAGCGGCAAGGCTAT......................................................................2111.0011000000
......................................................................................................................................TCAGCGGCAAGGCTATTCCA..................................................................2011.0010000100
....................................................................................................................................ACTCAGCGGCAAGGCTATTCCAG.................................................................2311.0010000100
.........................................................................................................................................GCGGCAAGGCTATTCCAGTA...............................................................2011.0011000000
.........................................................................................TCTCGAATAGCGTTGTGACG...............................................................................................................2011.0011000000
..............................................................................................AATAGCGTTGTGACTGAGG-TA........................................................................................................2111.0011000000
..........................................................................................CTCGAATAGCGTTGTGACTGAT............................................................................................................2211.0010000100
...............................................................................................................GG-TAACTGCGCATCGAATCTACTC....................................................................................2411.0011000000
...............................................................................................ATAGCGTTGTGACTGAGG-..........................................................................................................1811.0011000000
.........................................................................................................................................GCGGCAAGGCTATTCCAGT................................................................1911.0010000100
......................................................................................................TGTGACTGAGG-TAACTGCGC.................................................................................................2011.0010100000
.........................................................................................TCTCGAATAGCGTTGTGACTGTA............................................................................................................2311.0010000010
......................................................................................................................................TCAGCGGCAAGGCTATTCCAGTAA..............................................................2411.0011000000
............................................................................................CGAATAGCGTTGTGACTGAGT-..........................................................................................................2111.0010000100
droYak3
AGAACTCGGAAAAGTCGT--TGTTTTAG--A-------------A-----ACGCAGAGGA--C------ACA---CCTAAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGTATCTACTCAGCGGCGAAGCTATTCCAGTAAGGTTATTTTGGGCC-A---GCGACTTTACGACC-----GGAAAACAAGGGTGTT--AACTATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................TCTCGAATAGCGTTGTGACTGA.............................................................................................................22114537.0014537974917451770176167282605311425
.........................................................................................TCTCGAATAGCGTTGTGACT...............................................................................................................2012407.00240721121116101326830010
.........................................................................................TCTCGAATAGCGTTGTGACTGG.............................................................................................................2211878.001878186311210100000
.........................................................................................TCTCGAATAGCGTTGTGACTG..............................................................................................................2111077.001077231388813044702177270
.........................................................................................TCTCGAATAGCGTTGTGACTGAA............................................................................................................231443.004433163764434150000
.........................................................................................TCTCGAATAGCGTTGTGACC...............................................................................................................201283.0028325602700000000
.........................................................................................TCTCGAATAGCGTTGTGAC................................................................................................................191270.00270129512301102018
..........................................................................................CTCGAATAGCGTTGTGACTGA.............................................................................................................211175.0017514156300020000
.........................................................................................TCTCGAATAGCGTTGTGACTGT.............................................................................................................22188.00885415311590000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT............................................................................................................23186.008638177014300016
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA-..........................................................................................................24162.006215113240000000
.........................................................................................TCTCGAATAGCGTTGTGACG...............................................................................................................20148.0048480000000000
..........................................................................................CTCGAATAGCGTTGTGACTGAG............................................................................................................22147.00471323202250000
.........................................................................................TCTCGAATAGCGTTGTGACTGC.............................................................................................................22138.00381525101410000
..........................................................................................CTCGAATAGCGTTGTGACTG..............................................................................................................20135.0035133000010000
.........................................................................................TCTCGAATAGCGTTGTGACTGAG............................................................................................................23133.0033158700030000
.........................................................................................TCTCGAATAGCGTTGTGACTGAC............................................................................................................23128.0028212400100000
.........................................................................................TCTCGAATAGCGTTGTGACTGTT............................................................................................................23121.0021141000240000
...........................................................................................TCGAATAGCGTTGTGACTGA.............................................................................................................20118.0018213001110000
.........................................................................................TCTCGAATAGCGTTGTGACTGAGG-..........................................................................................................24111.001121000000008
...........................................................................................TCGAATAGCGTTGTGACTGAGG-..........................................................................................................22110.001032310010000
.........................................................................................TCTCGAATAGCGTTGTGA.................................................................................................................1819.00921011210100
.........................................................................................TCTCGAATAGCGTTGTGACTGATT-..........................................................................................................2419.00951100020000
..........................................................................................CTCGAATAGCGTTGTGACT...............................................................................................................1918.00844000000000
........................................................................................................................................AGCGGCGAAGCTATTCCAGTAA..............................................................2216.00601130100000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA-A.........................................................................................................2516.00601400010000
..........................................................................................CTCGAATAGCGTTGTGACTGG.............................................................................................................2116.00660000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAC-..........................................................................................................2414.00411200000000
............................................................................................CGAATAGCGTTGTGACTGAGG-T.........................................................................................................2214.00421000010000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAT-..........................................................................................................2414.00412100000000
.........................................................................................TCTCGAATAGCGTTGTGACTT..............................................................................................................2114.00430001000000
............................................................................................CGAATAGCGTTGTGACTGA.............................................................................................................1914.00422000000000
........................................................................................................................................AGCGGCGAAGCTATTCCAGTA...............................................................2113.00302010000000
..........................................................................................CTCGAATAGCGTTGTGACTGAT............................................................................................................2213.00303000000000
...........................................................................................TCGAATAGCGTTGTGACTG..............................................................................................................1913.00302000010000
........................................................................................ATCTCGAATAGCGTTGTGACTG..............................................................................................................2213.00311100000000
............................................................................................CGAATAGCGTTGTGACTGAGG-..........................................................................................................2113.00301000020000
.........................................................................................TCTCGAATAGCGTTGTGACTGAGG-T.........................................................................................................2513.00320100000000
.........................................................................................TCTCGAATAGCGTTGTGACTA..............................................................................................................2113.00310001010000
.............................................................................................GAATAGCGTTGTGACTGA.............................................................................................................1813.00312000000000
..........................................................................................CTCGAATAGCGTTGTGAC................................................................................................................1812.00202000000000
.........................................................................................................................................GCGGCGAAGCTATTCCAGTAA..............................................................2112.00202000000000
.........................................................................................................................................GCGGCGAAGCTATTCCAGTAAA.............................................................2212.00202000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGTCT-..........................................................................................................2412.00220000000000
..........................................................................................CTCGAATAGCGTTGTGACTGAA............................................................................................................2212.00202000000000
............................................................................................CGAATAGCGTTGTGACTGAG............................................................................................................2012.00200000020000
.........................................................................................................................................GCGGCGAAGCTATTCCAGTAAG.............................................................2212.00201100000000
........................................................................................ATCTCGAATAGCGTTGTGACTGA.............................................................................................................2311.00101000000000
...........................................................................................TCGAATAGCGTTGTGACTGAGG-TAACT.....................................................................................................2711.00100000010000
..........................................................................................CTCGAATAGCGTTGTGACTGAGG-G.........................................................................................................2411.00110000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGACA-..........................................................................................................2411.00100100000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAGG-TAACC.....................................................................................................2911.00110000000000
........................................................................................................................................AGCGGCGAAGCTATTCCAGTAAA.............................................................2311.00101000000000
....................................................................................................................................ACTCAGCGGCGAAGCTATTCCA..................................................................2211.00100000010000
...........................................................................................TCGAATAGCGTTGTGACTGAGG-T.........................................................................................................2311.00100100000000
.........................................................................................TCTCGAATAGCGTTGTGACTCG.............................................................................................................2211.00110000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAGT-..........................................................................................................2411.00110000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGCC............................................................................................................2311.00100000100000
.........................................................................................................................................GCGGCGAAGCTATTCCAGTAAGC............................................................2311.00100100000000
.........................................................................................TCTCGAATAGCGTTGTGACTGTTT-..........................................................................................................2411.00110000000000
..........................................................................................................................................CGGCGAAGCTATTCCAGTA...............................................................1911.00101000000000
..................................................................................................................................CTACTCAGCGGCGAAGCTATTCCA..................................................................2411.00101000000000
............................................................................................CGAATAGCGTTGTGACTGATT-..........................................................................................................2111.00100000100000
........................................................................................ATCTCGAATAGCGTTGTGACT...............................................................................................................2111.00101000000000
droSec2
AGTAGTTGGATAGGTCGT--GGTTTTAG--C-------------C-----ACGCAGAGGA--C------ACA---CCTGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCCAGTAAGGTTGTTTTGGGCC-A---GCGACTTTATGACC-----GGAAAACAAGGGTGTT--AACTATSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................TCTCGAATAGCGTTGTGACTGA.............................................................................................................22130646.0030646147041123815163188
.........................................................................................TCTCGAATAGCGTTGTGACTG..............................................................................................................2119539.009539333843992471555
.........................................................................................TCTCGAATAGCGTTGTGACT...............................................................................................................2012994.002994925151946504
..........................................................................................CTCGAATAGCGTTGTGACTGA.............................................................................................................2111246.00124612152425
.........................................................................................TCTCGAATAGCGTTGTGACTGAA............................................................................................................231330.003301401103149
..........................................................................................CTCGAATAGCGTTGTGACTG..............................................................................................................201279.002792651004
.........................................................................................TCTCGAATAGCGTTGTGACTGT.............................................................................................................221234.0023488119324
.........................................................................................TCTCGAATAGCGTTGTGACTGAG............................................................................................................231195.0019596541629
.........................................................................................TCTCGAATAGCGTTGTGACTGAT............................................................................................................231171.001718561520
...........................................................................................TCGAATAGCGTTGTGACTGA.............................................................................................................201103.001037010419
..........................................................................................CTCGAATAGCGTTGTGACTGAG............................................................................................................22181.0081512415
..........................................................................................CTCGAATAGCGTTGTGACT...............................................................................................................19165.006562102
.........................................................................................TCTCGAATAGCGTTGTGA.................................................................................................................18158.0058429520
.........................................................................................TCTCGAATAGCGTTGTGACTT..............................................................................................................21155.0055391006
.........................................................................................TCTCGAATAGCGTTGTGACTGTT............................................................................................................23139.003932709
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA-..........................................................................................................24137.0037131212
.........................................................................................TCTCGAATAGCGTTGTGAC................................................................................................................19135.0035213110
.........................................................................................TCTCGAATAGCGTTGTGACTGC.............................................................................................................22130.003031908
...........................................................................................TCGAATAGCGTTGTGACTG..............................................................................................................19129.002915329
........................................................................................................................................AGCGGCGAGGCTATTCCAGTAA..............................................................22125.00257828
.........................................................................................TCTCGAATAGCGTTGTGACTGG.............................................................................................................22121.002111604
........................................................................................................................................AGCGGCGAGGCTATTCCAGTA...............................................................21118.00182817
............................................................................................CGAATAGCGTTGTGACTGA.............................................................................................................19116.001614200
..........................................................................................CTCGAATAGCGTTGTGACTGAA............................................................................................................22115.001515000
.........................................................................................TCTCGAATAGCGTTGTGACTGATT-..........................................................................................................24114.00144802
.........................................................................................TCTCGAATAGCGTTGTGACTGAC............................................................................................................23112.00128220
..........................................................................................CTCGAATAGCGTTGTGACTGG.............................................................................................................21112.001212000
........................................................................................ATCTCGAATAGCGTTGTGACTGA.............................................................................................................23112.001212000
..........................................................................................CTCGAATAGCGTTGTGACTGT.............................................................................................................21111.00119101
...........................................................................................TCGAATAGCGTTGTGACT...............................................................................................................18111.00117202
............................................................................................CGAATAGCGTTGTGACTGAGG-T.........................................................................................................2219.0093501
........................................................................................................................................AGCGGCGAGGCTATTCCAGT................................................................2019.0094500
.........................................................................................TCTCGAATAGCGTTGTGACTA..............................................................................................................2118.0083401
............................................................................................CGAATAGCGTTGTGACTGAGG-..........................................................................................................2117.0071501
............................................................................................CGAATAGCGTTGTGACTGAGG-TA........................................................................................................2317.0073301
.........................................................................................TCTCGAATAGCGTTGTGAT................................................................................................................1917.0072203
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA-A.........................................................................................................2516.0064110
.........................................................................................TCTCGAATAGCGTTGTGTT................................................................................................................1925.50115303
.............................................................................................GAATAGCGTTGTGACTGA.............................................................................................................1815.0054001
...............................................................................................................GG-TAACTGCGCATCGAATCTACT.....................................................................................2315.0055000
........................................................................................ATCTCGAATAGCGTTGTGACTG..............................................................................................................2215.0052102
.........................................................................................TCTCGAATAGCGTTGTGT.................................................................................................................1815.0050005
..........................................................................................CTCGAATAGCGTTGTGACTGAGG-..........................................................................................................2315.0052120
.........................................................................................TCTCGAATAGCGTTGTGACA...............................................................................................................2015.0052210
.........................................................................................TCTCGAATAGCGTTGTGACC...............................................................................................................2015.0050401
.........................................................................................TCTCGAATAGCGTTGTGACTGAGG-TC........................................................................................................2614.0040400
.........................................................................................TCTCGAATAGCGTTGTGACTTT.............................................................................................................2214.0042200
.........................................................................................TCTCGAATAGCGTTGTGACTGAGA-..........................................................................................................2414.0040310
............................................................................................CGAATAGCGTTGTGACTG..............................................................................................................1814.0044000
.........................................................................................................................................GCGGCGAGGCTATTCCAGTAA..............................................................2114.0044000
........................................................................................................................................AGCGGCGAGGCTATTCCAG.................................................................1914.0040004
...........................................................................................TCGAATAGCGTTGTGACTGAGG-..........................................................................................................2214.0041300
.........................................................................................TCTCGAATAGCGTTGTGACTGAGT-..........................................................................................................2414.0042200
..........................................................................................CTCGAATAGCGTTGTGACTGAT............................................................................................................2214.0044000
...........................................................................................TCGAATAGCGTTGTGACTGAG............................................................................................................2114.0043001
.........................................................................................TCTCGAATAGCGTTGTGACTGACT-C.........................................................................................................2513.0030201
.........................................................................................TCTCGAATAGCGTTGTGACTGTTT-..........................................................................................................2413.0032100
.........................................................................................TCTCGAATAGCGTTGTGACTGAAT-..........................................................................................................2413.0032100
.........................................................................................TCTCGAATAGCGTTGTGACTGAGG-..........................................................................................................2413.0032001
..........................................................................................CTCGAATAGCGTTGTGACTGAGT-..........................................................................................................2313.0033000
.........................................................................................TCTCGAATAGCGTTGTGAA................................................................................................................1913.0032001
............................................................................................CGAATAGCGTTGTGACTGAGG-TT........................................................................................................2313.0031101
........................................................................................ATCTCGAATAGCGTTGTGACT...............................................................................................................2113.0032100
.........................................................................................TCTCGAATAGCGTTGTGACG...............................................................................................................2012.0022000
......................................................................................................................................TCAGCGGCGAGGCTATTCCAG.................................................................2112.0021001
..........................................................................................CTCGAATAGCGTTGTGACTGAC............................................................................................................2212.0022000
..........................................................................................CTCGAATAGCGTTGTGACTT..............................................................................................................2012.0022000
.........................................................................................TCTCGAATAGCGTTGTGACTC..............................................................................................................2112.0021001
..........................................................................................CTCGAATAGCGTTGTGACTTG.............................................................................................................2111.0011000
.........................................................................................TCTCGAATAGCGTTGTGACCT..............................................................................................................2111.0010100
droSim2
AGGAGTCGGATAGGTCGT--GGTTTTAG--C-------------C-----ACGCAGAGGA--C------ACA---CCTGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCCAGTAAGGTTGTTTTGGGCC-A---GCGACTTTATGACC-----GGAAAACAAGGGTGTT--AACTATSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................TCTCGAATAGCGTTGTGACTGA.............................................................................................................221207436.00207436944614362215909669973225012674791364435392530444186314150341990
.........................................................................................TCTCGAATAGCGTTGTGACT...............................................................................................................20191812.0091812662342146213046615038911773673571893811454019
.........................................................................................TCTCGAATAGCGTTGTGACTGG.............................................................................................................22129390.0029390158239550399510031213018002
.........................................................................................TCTCGAATAGCGTTGTGACTG..............................................................................................................21122214.002221435301684255195195519511128312045120695704163924242688
.........................................................................................TCTCGAATAGCGTTGTGACTGAA............................................................................................................23110889.00108893283139415092200924889142211274513134126001
.........................................................................................TCTCGAATAGCGTTGTGACC...............................................................................................................2018218.0082186515158212000010000000000
.........................................................................................TCTCGAATAGCGTTGTGAC................................................................................................................1914347.004347217672413983667499424192130162411
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA-..........................................................................................................2414131.00413118790500230064065511607244112945000
.........................................................................................TCTCGAATAGCGTTGTGACG...............................................................................................................2011977.00197712756624000000000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGT.............................................................................................................2211139.00113971520931100604681201749000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT............................................................................................................2311138.0011385051875960095786050402073001
.........................................................................................TCTCGAATAGCGTTGTGACTGAG............................................................................................................231909.0090927622794213245340495273564000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA-A.........................................................................................................251576.005766250600971111899232180000
.........................................................................................TCTCGAATAGCGTTGTGA.................................................................................................................181362.00362571930611573012776000012
.........................................................................................TCTCGAATAGCGTTGTGACTGTT............................................................................................................231332.0033226855200061000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAC............................................................................................................231293.0029314941441002020750042000
.........................................................................................TCTCGAATAGCGTTGTGACTGC.............................................................................................................221281.0028120541900087730001000
..........................................................................................CTCGAATAGCGTTGTGACTGA.............................................................................................................211207.0020757271049811743100027003
.........................................................................................TCTCGAATAGCGTTGTGACTGATT-..........................................................................................................241152.0015210228200087211001000
...........................................................................................TCGAATAGCGTTGTGACTGA.............................................................................................................20181.0081358540076312217000
..........................................................................................CTCGAATAGCGTTGTGACT...............................................................................................................19177.00774417123720000001000
.........................................................................................TCTCGAATAGCGTTGTGACA...............................................................................................................20177.00774816200014110004000
.........................................................................................TCTCGAATAGCGTTGTGACTT..............................................................................................................21166.00664413010021010004000
........................................................................................................................................AGCGGCGAGGCTATTCCAGTAA..............................................................22163.00630000007613404128000
.........................................................................................TCTCGAATAGCGTTGTGACTGATA-..........................................................................................................24163.0063802000121714100000000
..........................................................................................CTCGAATAGCGTTGTGACTGAG............................................................................................................22152.00521312003712471002000
.........................................................................................TCTCGAATAGCGTTGTGACTGAGA-..........................................................................................................24150.0050179800053521000000
.............................................................................................GAATAGCGTTGTGACTGA.............................................................................................................18148.0048127402112149014000
..........................................................................................CTCGAATAGCGTTGTGACTG..............................................................................................................20145.00455501112022300013001
.........................................................................................TCTCGAATAGCGTTGTG..................................................................................................................17140.00400000001752412000000
...............................................................................................ATAGCGTTGTGACTGA.............................................................................................................16137.0037000000000136000000
...........................................................................................TCGAATAGCGTTGTGACT...............................................................................................................18137.0037277000010101000000
.........................................................................................TCTCGAATAGCGTTGTGACTGACA-..........................................................................................................24133.0033111000813321030000
........................................................................................ATCTCGAATAGCGTTGTGACTGA.............................................................................................................23130.0030911000200001016000
.........................................................................................TCTCGAATAGCGTTGTGACTA..............................................................................................................21129.0029104100034301003000
............................................................................................CGAATAGCGTTGTGACTGA.............................................................................................................19122.002234101000117004000
.........................................................................................TCTCGAATAGCGTTGTGG.................................................................................................................18121.0021128100000000000000
........................................................................................................................................AGCGGCGAGGCTATTCCAGTA...............................................................21119.001900000002321119000
...........................................................................................TCGAATAGCGTTGTGACTGAGG-..........................................................................................................22119.001945000021420010000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAC-..........................................................................................................24118.001830700002230010000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAT-..........................................................................................................24118.001860400041120000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAGT-..........................................................................................................24117.001762100010140011000
..........................................................................................CTCGAATAGCGTTGTGAC................................................................................................................18116.001633004500000000001
..........................................................................................CTCGAATAGCGTTGTGACTGG.............................................................................................................21115.001559100000000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGATA-A.........................................................................................................25115.001500100010850000000
............................................................................................CGAATAGCGTTGTGACTGAGG-T.........................................................................................................22114.001484001010000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAGG-..........................................................................................................24114.001453400100000010000
........................................................................................ATCTCGAATAGCGTTGTGACTG..............................................................................................................22114.001450100012201002000
.........................................................................................TCTCGAATAGCGTTGTGACTTG.............................................................................................................22114.001475200000000000000
............................................................................................CGAATAGCGTTGTGACTGAGG-TA........................................................................................................23114.0014101000100010010000
............................................................................................CGAATAGCGTTGTGACTGAGG-..........................................................................................................21113.001337001020000000000
...........................................................................................TCGAATAGCGTTGTGACTGG.............................................................................................................20113.001392200000000000000
.........................................................................................TCTCGAATAGCGTTGTGACTTT.............................................................................................................22111.0011101000000000000000
...........................................................................................TCGAATAGCGTTGTGACTG..............................................................................................................19110.001010010022210001000
.........................................................................................TCTCGAATAGCGTTGTGACTGGT............................................................................................................23110.001051400000000000000
..........................................................................................CTCGAATAGCGTTGTGACTGAA............................................................................................................2219.00942120000000000000
.........................................................................................TCTCGAATAGCGTTGTGAAA...............................................................................................................2019.00981000000000000000
..............................................................................................AATAGCGTTGTGACTGA.............................................................................................................1719.00900000011016000000
.........................................................................................TCTCGAATAGCGTTGTGACTGTA............................................................................................................2319.00942000001110000000
.........................................................................................TCTCGAATAGCGTTGTGACTGACA-A.........................................................................................................2518.00820000010100040000
.........................................................................................................................................GCGGCGAGGCTATTCCAGTAAA.............................................................2218.00810000012130000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA-C.........................................................................................................2517.00700000012210010000
.........................................................................................TCTCGAATAGCGTTGTGACTGACT-..........................................................................................................2416.00630000001100001000
...............................................................................................ATAGCGTTGTGACTG..............................................................................................................1516.00600000000006000000
.........................................................................................TCTCGAATAGCGTTGTGACTC..............................................................................................................2115.00501000010000003000
.........................................................................................................................................GCGGCGAGGCTATTCCAGTAA..............................................................2115.00500000010310000000
................................................................................................TAGCGTTGTGACTGA.............................................................................................................1515.00500000012101000000
........................................................................................................................................AGCGGCGAGGCTATTCCAGTAAA.............................................................2315.00500000000400001000
dm3
AGGAGCCGGAAAAGTCGT--AGCGTTAG--C-------------C-----ACGCAGAGGA--C------ACA---CCTGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCAAGTAAGGTTATTTTGGGCC-A---GCGACTTTACGACC-----GGAAAACAAGGGTGTT--AACTATSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................TCTCGAATAGCGTTGTGACTGA.............................................................................................................221312350.00312350000084134331700000202183252302182722276132791746913103018611444146300441436102886281982176323655542734100092111600000000000000000106123108716472794539135948214362116561103655229224320325115108191873516157801220580571138011023416649019151100016106033753196410113378904618000101022301259329101313531267123161639210728089684517153142700403789194311881695148764521556442123313811101973171672420776155642510184101733541308341282101182182154159001432000526382174908568316461240962129229210542681616432271511841134338427992314181424275110858520401203941803634809813764332191643399636729489484530128542050018902423253721842805508103717302388504711841465725296214476232116993679036423017918749977138185431948936001457189914619892201530122525452214713354
.........................................................................................TCTCGAATAGCGTTGTGACTG..............................................................................................................21172067.0072067000020000010200000105555756001010820142149763211635259210810771202336913529116699220800041610000000000000000010118102124220020192011513581023161720002524041273172029029726020165126000520000101011190112001414117610000010000023898802511941342511141841892617922935549000107955892744162653400394651491201001117212500139940120553961279371628141193332000001007973075751368873497530561118891945001555101972291174362509623658722891353102876204089002013471115237502178263732860922124438827762843914503151162023065964413124151470006832029943220107373204019282043592261386260751962111949289722865983055171
.........................................................................................TCTCGAATAGCGTTGTGACT...............................................................................................................20124963.002496300000000010000000000612151301028521582711129331716002233018826171622440010200000000000000000012138514020100201421148201087520000601140041035020012241110228301183200003001002200010030111700000000000835770767135813523645614016836000103021058142280006105511003012418602012010041124797342153009111360000100081005936330201692212345444029165316008272739223356397206739541007913510326551313213971116331410881377482664021717150113414304686158187115060111597231586380611121100061917042580953173895901492216616854794250
.........................................................................................TCTCGAATAGCGTTGTGACTGAAT-C.........................................................................................................2517737.007737000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022305507000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAA............................................................................................................2317615.00761500000000000000000000815510000000000142112800278503221191611810000000000000000000000023031100731001126100157001000000220300016002020200032128000000000001016600100010522230000020000016920252091022411612800000030274211831001731714200001638310000000010035291150232057722740000186700980230710016001113504148000139273859014241344100611471183284511142521100001696134724917251721113955731712018439001373672884640342983050108729351913286243600011
.........................................................................................TCTCGAATAGCGTTGTGACTGAG............................................................................................................2313303.00330300000000000000000000521500003000000022390010815134317413600001217100000000000000000020102002100022300215004315000000101100100501031500045000100000200001400100030237000000000001132019531354501010120000002560142815000230463800000224030210000000075583761443204200000000125041082305001411401193000102232242511440132580015363292120276103701126708302018192120101225176518359450041361953950500426718502451212171326391700001
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA-..........................................................................................................2413221.00322100000011100000000000830000000000001323141001362118046231200000000000000000000000010006130400000000020001030000001000000000000000000000000000000000035000000502212000000000006120410020000020000005123241000011590000034551000000000001168481954238172000012001001000001003070020000311620221010035737919323657517300000731009740321014253878005300756555440001121902012601016318500000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT............................................................................................................2313002.0030020000000000000000000010120000000000012130025206009351100000000000000000000000320202001100102000127005060000000101001000303020002119000000000000004001000504500000000000257901714145215211633300000432131470001208240103013130020000000001618810315222448100000013380021000051002110120250053000722513270831342500154030641123042554000087101296471717131365182045160352900116145524851128637401623437367101073600005
........................................................................................................................................AGCGGCGAGGCTATTCAAGTAA..............................................................2212286.002286000000000000000000002120003000000000011001013011002100009000000000000000000010002903110121831202011062020046812923469914461021340730908040000100000000000000021032140010000012030102723019001619112020025000120515651000601900000033000000623332122630000100000003201525243143371324408427230138144617126160010920322183031495017171815311113139211002003144009431647193240874302442236221021321912134160
.........................................................................................TCTCGAATAGCGTTGTGA.................................................................................................................1811818.001818000000000000000000004512100453750001010000500100901100000000000000000000000011010000000000100110100110000000010000010200022000558002170000050000100000000010000000000051300910555375104533000001526261120050197000002200600000021071000000000000000050001052603101024204131000411582430136227014110455122236320200162182069121215166918211012142140020182717101452380131881955182800000
.........................................................................................TCTCGAATAGCGTTGTGACTGC.............................................................................................................2211713.0017130000000000000000000033220000000000000040024460333081302241000000000000000000000000010000000000000001020021000000000000011090200010134805000110000000000300000031613000000000212229017302000010210000072223000003100000050000000000001001010024000010003101521584021008015073101006118715169381900838103240192115000027333410216721337397204214523000251480001311720404321011400000
.........................................................................................TCTCGAATAGCGTTGTGACTATC............................................................................................................2321691.00338200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008862496000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGT.............................................................................................................2211647.001647000000000000000000001010000000000000207002190115036109010000000000000000000000011101002000010160001200321100000000000000400010205130180002000000000010000000012000000000001410802811540617180000001652810003029020004600100000000012172613002140000790001013133002000170220417320056171312061980160091941918131610000032837866713151001210519100002296218010305065118428473111185112800010
.........................................................................................TCTCGAATAGCGTTGTGACTGATC-..........................................................................................................2411423.00142300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000100000000000000100000100002821125000000000000000000000000000000000000000101000000000001001000011000000001100000000100010000100000
..........................................................................................CTCGAATAGCGTTGTGACTGA.............................................................................................................2111052.0010520000000000000000000000120004191190102000005200110301000000220000000000000000000000000000001100010500360000020000100000101020103052000300000500000000000300100000000000269002421515111113181118000000621332000101200000110310000000002117106311311000000001200103111300120120151000012924053118004163121312105000110231408856314045013200122912110005183408060943277000021
...........................................................................................TCGAATAGCGTTGTGACTGA.............................................................................................................2011030.001030000000000000000000007230000100000002193101010112114250000000000000000000000000001000000000011000100000000000000000000000000000000000000000000000000000050411000000000002801411633000100000056992000800900000070010000000001423101012750000000054000059080040130311000084141112051650330094310484013063700001423004201200150290161000026101500123253207552557221000000
.........................................................................................TCTCGAATAGCGTTGTGAC................................................................................................................191997.009970000000000000000000001070000200000100220011000002000000000000000000000000000412100000000003000202000020000000000000001000000010040012210000030000400000000000000000000072830240222324108800000961200001019000100200100000010016440001120000010022000022007307014013000014226140710193300021314221200006423011824950222701690002111000021391308011147440221000025
..........................................................................................CTCGAATAGCGTTGTGACTGAG............................................................................................................221808.008080000000000100000000000010008300000000210042001104240000001000000000000000000000000000100002000103000580000000000002000010100000010002000000000000000004021000000000009220122981521134191300000154212003038000002525600000010027754400314000000001100002100700120900430001261069013410150021001490000011961367615560000030120000441206002816300103984127141600000
.........................................................................................TCTCGAATAGCGTTGTGACTGG.............................................................................................................221620.006200000000000000000000001010000000000000000011500111335001000000000000000000000000000100000000000000010040010000100000010000001010203200000000000000000100000000000000000017220140413030456000000161200000201000000150010000000001210100000000000001008003901300202001210010621023316007124132697260000121100337113115011007300021365001512300700110022200000
........................................................................................................................................AGCGGCGAGGCTATTCAAGTA...............................................................211531.005310000100000000000000000000000107110000100000002200000100000000000000000000000001011002002012000412000312103500200001002701010100010000000000000001100001000000000004000750450120101413000601113003000104000000110000001320300000000000000000000002246021001400201000220132166420022700105200322028213323213200001230030217012811230606371073423063140
..........................................................................................CTCGAATAGCGTTGTGACTG..............................................................................................................201416.00416000000000000000000001002000620000000001000110000100000000000000000000000000000000000000000000000100000000000000000000101000100000000000000000000000000000100000000000953051398374245400000019403000030110000000001000000000711100002000000001000003600107060161000034010328300170032600000043422042211300113081000297100038120205864426300000
.........................................................................................TCTCGAATAGCGTTGTGACTT..............................................................................................................211366.003660000000000000000000001100000000000000100020020000010000000000000000000000000000000000000000000000000000000000000000002000001010260002000000000000000000000000000000003510140110000100000002002030010200000012000000000000101000000000002001100201270730140801051210001312034720000000200000001725020001250021307700010320012180123542200300000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA-A.........................................................................................................251313.003130000000000000000000010000000000000200200011002102100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000101000000000000000000105000010000000680000000000000177410263500000000000000000000000000000000001001100045813165102000000000610000035800100041152000000110000003201000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAC............................................................................................................231307.0030700000000000000000000000000000000000001000110010061000000000000000000000000000000000000000000000000000000000000000000000102000001100000000000000000000000010000000000012020012000000000000100032000015000000000000000000022562200314000038001202000401001010002000003000353700124542705000012020043005130260081000318850104490406531110200000
.........................................................................................TCTCGAATAGCGTTGTGACTGTT............................................................................................................231246.00246000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000000000000100000000000002000000000000000000000000000000000000217000010020100000000510100001050000000000000000000030200000000000100000000110120201020100000111001200000020600000033020002074000220210000415800049120511736144345500000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAT-..........................................................................................................241235.00235000000000000000000000000000000000001000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000340000000000000000001100100000000001000000000000000042000223000031143000000000000000000000000000130000100000005000000101002000000010104100003100000100101010101200000
...........................................................................................TCGAATAGCGTTGTGACTG..............................................................................................................191213.00213000000000000000000000010000100000001100000111011002000000000000000000000000010000000000000000000000000000000000000000001000000000000000000000002000000000000000000000100021001201000000001303400030300000001000000000000411000000000000000000001402008030112000107020151140033044161200007122200002000011021000224300057130400351125200000
............................................................................................CGAATAGCGTTGTGACTGAGG-TA........................................................................................................231191.001910000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000100100031001000000000001000000004000100000000000005430000210000000010000003010020300210001611203020000001117000000610112554130020110810000109300058140121121000400000
.........................................................................................TCTCGAATAGCGTTGTGT.................................................................................................................181165.00165000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000101000000020000000000000000000000000000000000000036020200100481000000110000000010000000000100000000020000000000000000000010030010305011000022404033711000000000000001603110021230000202200000000000110201200000600000
.............................................................................................GAATAGCGTTGTGACTGA.............................................................................................................181164.00164000000000000000000000100000100000000000000001000000000000000000000000000000011010000000000000000000000000000000000000000000000010001200000000000000000106300000000000150001121200100000005241000020100000000000000000000510000110000000000000000100000000000000000000012200224036192400001001000101000040011000000000020100000000000000028
.........................................................................................TCTCGAATAGCGTTGTGACTGATT-..........................................................................................................241157.001570000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000002400000100000200000004013000107300000110000000000001610000130000000000000000030020000010003101100010000002190000001411010111000010072000082500017120303781205300000
........................................................................................................................................AGCGGCGAGGCTATTCAAGT................................................................201133.0013300000000000000000000110000001000008001000000000000000000000000000000000000000000000000010000000100000600106010000000000102000000100000000000000010000000000000000000054000010021001000020100000000000000000000000010100000000000000000000000000000000003000010000001000010000000100100012021000000000002000100411430201000410621151240030
........................................................................................ATCTCGAATAGCGTTGTGACTG..............................................................................................................221132.0013200000000000000000000000100000000100000000000000000020000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000700000000000010012000000010000000000010000050000000100000000010041000000000000000000000040100101002000000002000210000001240100003211101302000042010000412310000350131043000000000
............................................................................................CGAATAGCGTTGTGACTGAGG-T.........................................................................................................221126.00126000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000060000001001000000000011000002000000000000000300002010010000012010002000130151101000030000013250010210510001127300000190202311000100000
........................................................................................ATCTCGAATAGCGTTGTGACTGA.............................................................................................................231117.001170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000301000001000000000001001000101000000000000000000002110000200000000011000002000000000100001000201021000512347020000201003112110000001000026100001120200000000000000
.........................................................................................TCTCGAATAGCGTTGTGACTGATA-..........................................................................................................241114.00114000000000000000000000000000000000000011001030100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000010010000100000001001100000000000000000000000000010210001500000200000100000100001000000000000001100013028121000002001050210023040000000119100000110000110000000000
.......................................................................................................................................CAGCGGCGAGGCTATTCAAGT................................................................211107.0010700000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000001000000000000000000000000000020000100000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000012000100000000000000014005190000000100110000000000100001220014001010002853222221030
.......................................................................................................................................CAGCGGCGAGGCTATTCAAGTA...............................................................221103.001030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000020000000000000000000000000000000000100000000000000000011010000000001000400001200001500519000000032111000300000000000048031300721221461100000000
...............................................................................................................GG-TAACTGCGCATCGAATCTACTC....................................................................................241101.0010100000000000000000000000000001000000100000000000000000000100000000000000000000000000000010022005100001140000031101002000000000000000000000000000000101010000000000000004204000401111011000000000002000000000000000000000000072143101000000000000000000000000000100000000000000000000000000000000010001300000000110100000000000100000100000
............................................................................................CGAATAGCGTTGTGACTGA.............................................................................................................19196.009600000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100010000000000000000000000000000000001010000020000000000221000000006000000200000000000020000000000000000000000000000000000000001001010530016214161500001000010100000020000000000000000100001000000000020
.........................................................................................TCTCGAATAGCGTTGTGACTC..............................................................................................................21193.00930000000000000000000000020000000000000000010000200010000000000000000000000000000000000000000000000000000000000000000000000101000010000000000000010000000000000000000001200000000010200000040020000000000000000000000000000000000000000000000000001000020000001000100300121000303211010000601101010031010003300003220001220300010101000000
..........................................................................................CTCGAATAGCGTTGTGACT...............................................................................................................19191.00910000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010100000200003000000000000000000000000000000003190042102201120000008010000000001200000000000000000200010000000000000000000000100000000000000001000400000012000000120000000200000002100002200002220010110000000000
.........................................................................................TCTCGAATAGCGTTGTGACA...............................................................................................................20191.00910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300001001000000000010110000001000000000000000000000100010000000020000000000000020100000000030000222000000380100102010100200200000143000031310000070100320301200000
.........................................................................................TCTCGAATAGCGTTGTGACTA..............................................................................................................21187.00870000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000002301200011001100000021021000000000000020000000000001100000010000511000000000001000000000000001100001100000005110000600000001200001002200011400002020101032100100000
...........................................................................................TCGAATAGCGTTGTGACTGAGG-..........................................................................................................22186.00860000000000000000000000010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100001000000000000000002000000000000000000000000000000000000021000000000000010000000000002110000010000000000000002000000000010000020000021000307024000000000000010100001001000029240000020110002000200000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAC-..........................................................................................................24184.008400000000000000000000000000000000000000000010000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000003510000100001038000000000000000000000000000000003000100204000000000002100001011100000001000000210000000000000000
.........................................................................................................................................GCGGCGAGGCTATTCAAGTAA..............................................................21182.0082000000000000000000000000000000000000000000100000000000000000000000000000000000000000200100300001300003003404210000000000000000000000000000000000000000020000000000000300400010201040000006010000000000000000000000401000000000000000000000000000100000010010001010001000000020002000000000001000000100020000002000200100000211020000000
..........................................................................................CTCGAATAGCGTTGTGACTGAGG-..........................................................................................................23177.00770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100010004000000000002000000000000000000000000002200000000000000000000014000000100000000121010400000000003000000402000010500000001000015010051510011011000000000
...........................................................................................TCGAATAGCGTTGTGACT...............................................................................................................18176.0076000000000000000000000110000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000001000100000000101000000000000000210000001000000000000001002001020030000004130033300000034010000101000001000200000200002330004110011030010200000
.........................................................................................TCTCGAATAGCGTTGTGACTGAGA-..........................................................................................................24175.0075000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100100110000001020100000000000001000000000000114110003000001000000000000000010010000000010013100000125030000002001000000002002000227001000170111010001000000
.........................................................................................TCTCGAATAGCGTTGTGAT................................................................................................................19174.00740000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001270031000001301000000000000000000000000000000000000100000000000000000000001000101010000000001100010000000000000000101110000100000001000000000002100100316001600000
.........................................................................................................................................GCGGCGAGGCTATTCAAGTAAA.............................................................22172.0072000000000000000000000010000000000000000000000000000000000000000000000000000000000000000100000001300010019623000000000000000000022000000000000000000000040000000000000220100000002000000001000000000000000020000000030000000000000000100000002000000000000000000000001000000010014000010100000000000000001000114000000300000100000000000
droEug1
AGAAAAC-----------GTTA----A-AA---------------AATA-ACCGAGAGTA--C------ACA---CCCATAATCACCCATCTCGAATAGCGTTGTGACTGAGT-TAACTGCCCATTAAATCGACTCAGCGGCAACGCTATTCCAGTTAGGTTATTTTGGTCA-A---GCGACTTTACGACC-----GGAAAATTGGGGTGTTGAAAATATSizeHit CountTotal NormTotal
No Reads
droBia1
GAATGCC-----------GGTA----G-A---------------------------AGGA--A------ACC---CTCGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGTATTGAATCGACTCAGCGACAAGGCTATTCAAGTTAGGTTATTTTGGGCC-A---GCGACT--ACGACC-----GAAACATTAGGCTGTC--AGCTATSizeHit CountTotal NormTotal
No Reads
droTak1
AAGCAA-----AATTCG-CATA----G-CT-CTCG------GCA-AAAC-AAGGAGACGA--T------ACA---CCCGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAAACGACTCAGCGGCAACGCTATTTCAGATAGGTCATTTTGGGCC-A---GCGACTTTACGACC-----GGAAAATTGTTCTGCT--AACTATSizeHit CountTotal NormTotal
No Reads
droEle1
AAGTGTC-----------CATG----G-CA---------------CAAATCCGAAGGGAA--T------GCT---CCCGAAACTACCCATTTCGAATGGCGTTGTGACTGATG-TAACTGCGCATCGAATTAGCTCAGCGACAACGCTAATCCAGTTGGGTTACTTGGGGCC-A---GCGACTTTACAACC-----GGAAAATTGGGCTGTT--AACT--SizeHit CountTotal NormTotal
No Reads
droRho1
AAATGTC-----------CGTG----G-CA---------------AAAA-ACGGATTGAA--T------ACT---CCCGAAATCACCCATCTCGAATAGCGTTGTGACTGAGG-TAAGTGCGCTCCGAGTTGACTCAGCGGCAACGCTATTCCAGTTAGGTTGTTTTGGGTC-A---GCGACTTTACGACC-----GGAAGGTTAGGGTGCT--AACTATSizeHit CountTotal NormTotal
No Reads
droFic1
AAAAGCC-----------ACAA----G-CA-GG------------AAAA-ACGGAGAGGA--T------AC----CCCGAAATTACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGCATCGAATCTACTCAGCGGCAACGCTATTCCAGGTGGGTTATTTCGGGCC-A---GCGACTTTACGACC-----GAAAAATTTTGACGTT--AACTTTSizeHit CountTotal NormTotal
No Reads
droKik1
AGAAAA---------------------------------------------CGCCGAGGAAAC------ACCCTTTCCGGAACGACCCATCTCGAATAGCGTTGTGACTGAGG-TAACTGCGATTCAAACTGACTCAGAGGCAGCGCTATTCCAGTGAGGTCGTTCTGGGCC-A---GCCACTTTACAACC-----AGAATGAATGTGTGCT--AACTGTSizeHit CountTotal NormTotal
No Reads
droAna3
GAAAAGC-----------CTTC--TTTG--G-------------T-----TTCCTGAGGA--T------ACG---TCCAAAATGACTCATCTCGAATAGCGTTGTGACTGATGGTA------TTTAAATATAAATCCGAGACAATGCTATTCTTGTAAAGTCATCTTGACCA-A---GCAACTTTT-----------------------TCT--AATCGASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................TCTCGAATAGCGTTGTGACTGA.............................................................................................................22117144.0017144131491002478118771213
.........................................................................................TCTCGAATAGCGTTGTGACTG..............................................................................................................2119941.0099416494846192041775
.........................................................................................TCTCGAATAGCGTTGTGACT...............................................................................................................2011921.00192112838281416131
..........................................................................................CTCGAATAGCGTTGTGACTGA.............................................................................................................2111269.0012691240006815
..........................................................................................CTCGAATAGCGTTGTGACTG..............................................................................................................201605.006055820021110
.........................................................................................TCTCGAATAGCGTTGTGACTGAT............................................................................................................231328.0032824060174025
.........................................................................................TCTCGAATAGCGTTGTGA.................................................................................................................181287.0028711400982649
.........................................................................................TCTCGAATAGCGTTGTGAC................................................................................................................191260.0026017513229356
.........................................................................................TCTCGAATAGCGTTGTGACTGATGG..........................................................................................................251177.00177650094657
.........................................................................................TCTCGAATAGCGTTGTGACTGT.............................................................................................................221153.001539700121925
..........................................................................................CTCGAATAGCGTTGTGACT...............................................................................................................19196.00969600000
.........................................................................................TCTCGAATAGCGTTGTGT.................................................................................................................18195.0095360033026
...........................................................................................TCGAATAGCGTTGTGACTGA.............................................................................................................20175.00757300200
.........................................................................................TCTCGAATAGCGTTGTGTT................................................................................................................19171.0071420031313
.........................................................................................TCTCGAATAGCGTTGTGACTGAA............................................................................................................23168.0068410071010
.........................................................................................TCTCGAATAGCGTTGTGACTGATGGTA------..................................................................................................27167.0067100012036
.........................................................................................TCTCGAATAGCGTTGTGACTT..............................................................................................................21162.0062230022512
.........................................................................................TCTCGAATAGCGTTGTGACTGATG...........................................................................................................24160.0060190171815
.........................................................................................TCTCGAATAGCGTTGTGACTGG.............................................................................................................22159.00595201132
...........................................................................................TCGAATAGCGTTGTGACTG..............................................................................................................19149.00494200160
.........................................................................................TCTCGAATAGCGTTGTGACTGATGGT.........................................................................................................26146.004640011724
.........................................................................................TCTCGAATAGCGTTGTGACTGC.............................................................................................................22134.003411211136
.........................................................................................TCTCGAATAGCGTTGTGACTTT.............................................................................................................22128.00281200466
.........................................................................................TCTCGAATAGCGTTGTGACTGATT...........................................................................................................24123.00231000049
.........................................................................................TCTCGAATAGCGTTGTGACTA..............................................................................................................21122.00222000173
.........................................................................................TCTCGAATAGCGTTGTGACTC..............................................................................................................21120.00201005131
.........................................................................................TCTCGAATAGCGTTGTGACTGAC............................................................................................................23119.00191320211
..........................................................................................CTCGAATAGCGTTGTGAC................................................................................................................18118.00181800000
..........................................................................................CTCGAATAGCGTTGTGACTGAT............................................................................................................22117.00171600100
............................................................................................CGAATAGCGTTGTGACTG..............................................................................................................18115.00151400001
.............................................................................................GAATAGCGTTGTGACTGA.............................................................................................................18114.00141000103
.........................................................................................TCTCGAATAGCGTTGTGACTGATGGTA------T.................................................................................................28113.0013900130
.........................................................................................TCTCGAATAGCGTTGTGACTGATGGTT------..................................................................................................27113.0013300037
.........................................................................................TCTCGAATAGCGTTGTGAT................................................................................................................19112.0012800040
..........................................................................................CTCGAATAGCGTTGTGACTGT.............................................................................................................21111.00111000001
.........................................................................................TCTCGAATAGCGTTGTGAA................................................................................................................19110.0010500131
............................................................................................CGAATAGCGTTGTGACTGA.............................................................................................................19110.0010900010
........................................................................................................................................CGAGACAATGCTATTCTTGTAA..............................................................2219.009320103
..........................................................................................CTCGAATAGCGTTGTGACTGAG............................................................................................................2219.009900000
...........................................................................................TCGAATAGCGTTGTGACT...............................................................................................................1819.009900000
.........................................................................................TCTCGAATAGCGTTGTGTA................................................................................................................1918.008400400
........................................................................................................................................CGAGACAATGCTATTCTTGTA...............................................................2116.006600000
..........................................................................................CTCGAATAGCGTTGTGACTGAA............................................................................................................2216.006600000
........................................................................................ATCTCGAATAGCGTTGTGACTGA.............................................................................................................2315.005500000
.........................................................................................TCTCGAATAGCGTTGTGACTGATGGTA------TT................................................................................................2915.005500000
.........................................................................................TCTCGAATAGCGTTGTGACTGAG............................................................................................................2315.005500000
.........................................................................................TCTCGAATAGCGTTGTGACTGAAA...........................................................................................................2415.005500000
........................................................................................................................................CGAGACAATGCTATTCTTGT................................................................2014.004000004
.........................................................................................TCTCGAATAGCGTTGTGATA...............................................................................................................2014.004100030
..........................................................................................CTCGAATAGCGTTGTGACTT..............................................................................................................2013.003300000
........................................................................................ATCTCGAATAGCGTTGTGACT...............................................................................................................2113.003300000
..........................................................................................CTCGAATAGCGTTGTGACTGATGGT.........................................................................................................2513.003300000
..........................................................................................CTCGAATAGCGTTGTGACTGATGG..........................................................................................................2413.003200001
........................................................................................ATCTCGAATAGCGTTGTGACTG..............................................................................................................2213.003300000
.........................................................................................TCTCGAATAGCGTTGTGACC...............................................................................................................2013.003210000
.........................................................................................TCTCGAATAGCGTTGTGTG................................................................................................................1912.002100010
.........................................................................................TCTCGAATAGCGTTGTGG.................................................................................................................1812.002000101
.........................................................................................TCTCGAATAGCGTTGTGACTTC.............................................................................................................2212.002000101
.........................................................................................TCTCGAATAGCGTTGTG..................................................................................................................1712.002000200
.........................................................................................TCTCGAATAGCGTTGTGACA...............................................................................................................2012.002100010
.........................................................................................TCTCGAATAGCGTTGTGACTGAAT...........................................................................................................2412.002000011
.........................................................................................TCTCGAATAGCGTTGTGACTGTA............................................................................................................2312.002200000
...........................................................................................TCGAATAGCGTTGTGACTGAT............................................................................................................2111.001100000
..........................................................................................CTCGAATAGCGTTGTGACTGATT...........................................................................................................2311.001100000
........................................................................................ATCTCGAATAGCGTTGTGACTGATGGTA------..................................................................................................2811.001100000
.........................................................................................TCTCGAATAGCGTTGTGATAT..............................................................................................................2111.001000010
droBip1
GTAAAAG-------GCAT--TCTTTGT--AA-------------AAAGA-TTCCAGAGGA--T------ACA---CCCAAAATGACTCATCTCGAATAGCGTTGTGACTGATG-TG------TTAAAGAATAAATCCGAGACAATGCTATTCTTGTAAAGTCATCTTGACCA-A---GCAACTATT----------------------------CATAATSizeHit CountTotal NormTotal
No Reads
dp5
CGAATCTC----------CTTA----T-CT-CCTGAA-------------TC----GGAG--T------ACG---ACTGAAACAACCCGTCTCGAATAGCGTTGTGACTGAT---GACTGCATTTGTAATTTTCTCAGCGGCAGTGCTATTCCAGTTGGGTTGTTTGCGGCCAAACAACAACTATAAAAAC-----AGAAA-CAG------T--GCATAGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................TCTCGAATAGCGTTGTGACTGA.............................................................................................................22112319.00123192977340811985953977283791235439
.........................................................................................TCTCGAATAGCGTTGTGACTG..............................................................................................................2114429.00442920305443191392015654330144
.........................................................................................TCTCGAATAGCGTTGTGACT...............................................................................................................2012017.00201722313002646117426275315
..........................................................................................CTCGAATAGCGTTGTGACTGA.............................................................................................................211708.00708169011135024
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---G........................................................................................................241335.0033581741633719457251
..........................................................................................CTCGAATAGCGTTGTGACTG..............................................................................................................201263.00263026200001000
.........................................................................................TCTCGAATAGCGTTGTGACTGT.............................................................................................................221227.00227314452111204298
.....................................................................................................................................CTCAGCGGCAGTGCTATTCC...................................................................201206.00206011321002259000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---.........................................................................................................231188.001887144414673102
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GA.......................................................................................................251180.00180698143181016744
............................................................................................CGAATAGCGTTGTGACTGAT---GA.......................................................................................................221156.0015617980271051394
.........................................................................................TCTCGAATAGCGTTGTGACTGAA---.........................................................................................................231150.00150497531342580
.........................................................................................TCTCGAATAGCGTTGTGAC................................................................................................................191149.001495695516201010
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCAG.................................................................221144.00144071102151036000
............................................................................................CGAATAGCGTTGTGACTGAT---G........................................................................................................211115.001151716045106102
........................................................................................................................................AGCGGCAGTGCTATTCCAGTTG..............................................................221105.00105078221400000
.........................................................................................TCTCGAATAGCGTTGTGACTGAA---A........................................................................................................241100.00100075321011800
..........................................................................................CTCGAATAGCGTTGTGACT...............................................................................................................19189.008908700010001
...........................................................................................TCGAATAGCGTTGTGACTGA.............................................................................................................20163.006304310435241
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCA..................................................................21138.003803310103000
.........................................................................................TCTCGAATAGCGTTGTGACTT..............................................................................................................21127.002701600205040
.........................................................................................TCTCGAATAGCGTTGTGACTGG.............................................................................................................22122.002211800210000
...........................................................................................TCGAATAGCGTTGTGACTG..............................................................................................................19120.002001300124000
..........................................................................................CTCGAATAGCGTTGTGACTGT.............................................................................................................21120.002011900000000
..........................................................................................CTCGAATAGCGTTGTGACTGAT---.........................................................................................................22119.001901900000000
.........................................................................................TCTCGAATAGCGTTGTGACC...............................................................................................................20118.00183069000000
.........................................................................................................................................GCGGCAGTGCTATTCCAGTTG..............................................................21118.001801440000000
.....................................................................................................................................CTCAGCGGCAGTGCTATTC....................................................................19118.001801600020000
.........................................................................................TCTCGAATAGCGTTGTGA.................................................................................................................18116.00160100264012
..........................................................................................CTCGAATAGCGTTGTGACTGAT---GA.......................................................................................................24115.001501500000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GAC......................................................................................................26114.00140800100500
..........................................................................................CTCGAATAGCGTTGTGACTGAT---G........................................................................................................23113.001301300000000
............................................................................................CGAATAGCGTTGTGACTGA.............................................................................................................19113.001311200000000
.........................................................................................TCTCGAATAGCGTTGTGACTGC.............................................................................................................22112.00120121124010
............................................................................................CGAATAGCGTTGTGACTGAT---.........................................................................................................20111.00110900001010
......................................................................................................................................TCAGCGGCAGTGCTATTCC...................................................................19111.001101100000000
..........................................................................................CTCGAATAGCGTTGTGACTGAA---.........................................................................................................22110.001001000000000
.........................................................................................TCTCGAATAGCGTTGTGTT................................................................................................................19210.002001600013000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---T........................................................................................................2419.0091200002310
.............................................................................................GAATAGCGTTGTGACTGAT---GA.......................................................................................................2117.0070600001000
......................................................................................................................................TCAGCGGCAGTGCTATTCCAG.................................................................2117.0070700000000
.............................................................................................GAATAGCGTTGTGACTGA.............................................................................................................1817.0070500010001
..........................................................................................CTCGAATAGCGTTGTGACTGAA---A........................................................................................................2317.0070700000000
...............................................................................................................T---GACTGCATTTGTAATTTTCTC....................................................................................2217.0070320100010
.........................................................................................TCTCGAATAGCGTTGTGACTGAG---.........................................................................................................2316.0060600000000
...........................................................................................TCGAATAGCGTTGTGACT...............................................................................................................1816.0060410001000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GAA......................................................................................................2615.0050400100000
.........................................................................................................................................GCGGCAGTGCTATTCCAGTTGT.............................................................2215.0050500000000
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCAGTT...............................................................2415.0050201002000
..........................................................................................CTCGAATAGCGTTGTGAC................................................................................................................1815.0050500000000
.........................................................................................TCTCGAATAGCGTTGTGACA...............................................................................................................2014.0040400000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAC---.........................................................................................................2314.0040202000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GT.......................................................................................................2514.0040300001000
.............................................................................................GAATAGCGTTGTGACTGAT---G........................................................................................................2014.0040400000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAA---T........................................................................................................2414.0040100000120
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GACTG....................................................................................................2814.0040400000000
.........................................................................................TCTCGAATAGCGTTGTGACTA..............................................................................................................2114.0040300010000
........................................................................................GTCTCGAATAGCGTTGTGACTG..............................................................................................................2214.0040400000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAC---TG.......................................................................................................2514.0040000000040
......................................................................................................................................TCAGCGGCAGTGCTATTC....................................................................1814.0040400000000
............................................................................................CGAATAGCGTTGTGACTGAT---GT.......................................................................................................2213.0030100100001
.........................................................................................................................................GCGGCAGTGCTATTCCAGTTGA.............................................................2213.0030120000000
............................................................................................CGAATAGCGTTGTGACTG..............................................................................................................1813.0030300000000
........................................................................................GTCTCGAATAGCGTTGTGACTGA.............................................................................................................2313.0030300000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GAG......................................................................................................2613.0030000000120
........................................................................................................................................AGCGGCAGTGCTATTCCAGT................................................................2013.0030210000000
............................................................................................CGAATAGCGTTGTGACTGAT---GAA......................................................................................................2313.0030100100001
........................................................................................................................................AGCGGCAGTGCTATTCCAGTT...............................................................2113.0030111000000
...........................................................................................TCGAATAGCGTTGTGACTGAT---.........................................................................................................2113.0030200001000
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCAGT................................................................2313.0030300000000
............................................................................................CGAATAGCGTTGTGACTGAT---GAAAA....................................................................................................2512.0020200000000
.........................................................................................TCTCGAATAGCGTTGTGACTGTA---A........................................................................................................2412.0020200000000
.........................................................................................TCTCGAATAGCGTTGTGT.................................................................................................................1812.0020000110000
.........................................................................................TCTCGAATAGCGTTGTGACTGAA---TG.......................................................................................................2512.0020000000200
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---TT.......................................................................................................2512.0020100001000
.........................................................................................TCTCGAATAGCGTTGTGACTTT.............................................................................................................2212.0020010001000
...........................................................................................TCGAATAGCGTTGTGACTGAT---GA.......................................................................................................2312.0020200000000
...........................................................................................TCGAATAGCGTTGTGACTGAG---.........................................................................................................2112.0020200000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GACTGC...................................................................................................2912.0020020000000
...................................................................................................................................TTCTCAGCGGCAGTGCTATTCC...................................................................2212.0020200000000
.........................................................................................TCTCGAATAGCGTTGTGAA................................................................................................................1912.0020200000000
.........................................................................................TCTCGAATAGCGTTGTGAT................................................................................................................1912.0020200000000
...........................................................................................TCGAATAGCGTTGTGACTGT.............................................................................................................2012.0020000011000
.........................................................................................TCTCGAATAGCGTTGTGACTGTA---C........................................................................................................2412.0020000000020
.........................................................................................TCTCGAATAGCGTTGTGACG...............................................................................................................2012.0022000000000
...........................................................................................TCGAATAGCGTTGTGACTGAT---G........................................................................................................2212.0020110000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GGG......................................................................................................2612.0020000000020
............................................................................................CGAATAGCGTTGTGACTGAT---T........................................................................................................2112.0020000002000
............................................................................................CGAATAGCGTTGTGACTGAT---GG.......................................................................................................2211.0010000010000
.........................................................................................TCTCGAATAGCGTTGTGACTC..............................................................................................................2111.0010100000000
..........................................................................................CTCGAATAGCGTTGTGACTGG.............................................................................................................2111.0010100000000
............................................................................................CGAATAGCGTTGTGACTTT.............................................................................................................1911.0010100000000
.........................................................................................TCTCGAATAGCGTTGTGACTAG.............................................................................................................2211.0010100000000
........................................................................................................................................AGCGGCAGTGCTATTCCAGTTGA.............................................................2311.0010100000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GAT......................................................................................................2611.0010100000000
..........................................................................................CTCGAATAGCGTTGTGACTGAG---.........................................................................................................2211.0010100000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---AG.......................................................................................................2511.0010000000010
..............................................................................................AATAGCGTTGTGACTGAT---G........................................................................................................1911.0010100000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---A........................................................................................................2411.0010000000010
.....................................................................................................................................CTCAGCGGCAGTGCTATTCA...................................................................2011.0010100000000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---CC.......................................................................................................2511.0010000000010
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GAAG.....................................................................................................2711.0010000000010
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCAGTTGT.............................................................2611.0010000001000
..........................................................................................CTCGAATAGCGTTGTGACTGAT---A........................................................................................................2311.0010100000000
.............................................................................................GAATAGCGTTGTGACTGAT---.........................................................................................................1911.0010100000000
............................................................................................CGAATAGCGTTGTGACTGAT---GAAA.....................................................................................................2411.0010100000000
..........................................................................................CTCGAATAGCGTTGTGACTT..............................................................................................................2011.0010100000000
droPer2
CGAATCTC----------CTTG----T-CT-CCTGAA-------------TC----GGAG--T------ACG---ACTGAAACAACCCGTCTCGAATAGCGTTGTGACTGAT---GACTGCATTTGTAATTTTCTCAGCGGCAGTGCTATTCCAGTTGGGTTGTTTGCGGCCAAACAACAACTATAAAAAC-----AGAAA-CAG------T--GCATAGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................TCTCGAATAGCGTTGTGACTGA.............................................................................................................2218391.00839146311432141500718969
.........................................................................................TCTCGAATAGCGTTGTGACTG..............................................................................................................2112240.00224011461545268406792
.........................................................................................TCTCGAATAGCGTTGTGACT...............................................................................................................2011391.001391569256976229252
.........................................................................................TCTCGAATAGCGTTGTGACTGG.............................................................................................................221850.0085084051130
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---G........................................................................................................241244.0024490247132090
.....................................................................................................................................CTCAGCGGCAGTGCTATTCC...................................................................201202.0020202002410553
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GA.......................................................................................................251141.001417020182022
.........................................................................................TCTCGAATAGCGTTGTGACTGAA---.........................................................................................................231140.001401002300710
............................................................................................CGAATAGCGTTGTGACTGAT---GA.......................................................................................................221135.0013525181151462
..........................................................................................CTCGAATAGCGTTGTGACTGA.............................................................................................................211123.0012301190121
.........................................................................................TCTCGAATAGCGTTGTGACTGT.............................................................................................................221100.00100827091145
.........................................................................................TCTCGAATAGCGTTGTGAC................................................................................................................19180.008053121293
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---.........................................................................................................23177.00771321371419
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCAG.................................................................22174.00740252151418
............................................................................................CGAATAGCGTTGTGACTGAT---G........................................................................................................21156.005601812629
..........................................................................................CTCGAATAGCGTTGTGACTG..............................................................................................................20146.00460430111
.........................................................................................TCTCGAATAGCGTTGTGACTGAA---A........................................................................................................24134.003421130000
.........................................................................................TCTCGAATAGCGTTGTGACC...............................................................................................................20129.00292800001
..........................................................................................CTCGAATAGCGTTGTGACT...............................................................................................................19129.00290270020
...........................................................................................TCGAATAGCGTTGTGACTGA.............................................................................................................20124.00243122142
.....................................................................................................................................CTCAGCGGCAGTGCTATTC....................................................................19124.00240303171
.........................................................................................TCTCGAATAGCGTTGTGA.................................................................................................................18123.0023230981
.........................................................................................TCTCGAATAGCGTTGTGACG...............................................................................................................20117.00171700000
.........................................................................................TCTCGAATAGCGTTGTGACTGC.............................................................................................................22117.0017301490
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCA..................................................................21116.00160140020
.........................................................................................TCTCGAATAGCGTTGTGTT................................................................................................................19114.0014030443
........................................................................................................................................AGCGGCAGTGCTATTCCAGTTG..............................................................22113.00130110110
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GG.......................................................................................................25113.00131300000
...........................................................................................TCGAATAGCGTTGTGACTG..............................................................................................................1919.009050040
.........................................................................................TCTCGAATAGCGTTGTGT.................................................................................................................1818.008000161
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---T........................................................................................................2417.007100123
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCAGT................................................................2317.007000214
............................................................................................CGAATAGCGTTGTGACTGAT---.........................................................................................................2017.007010006
.........................................................................................TCTCGAATAGCGTTGTGACTT..............................................................................................................2117.007010042
...........................................................G--T------ACG---ACTGAAACAACCCG...................................................................................................................................1916.006600000
.........................................................................................TCTCGAATAGCGTTGTGACTGAC---.........................................................................................................2316.006500001
............................................................................................CGAATAGCGTTGTGACTGA.............................................................................................................1915.005200003
.........................................................................................TCTCGAATAGCGTTGTGACTC..............................................................................................................2115.005000140
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GACTG....................................................................................................2815.005030002
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GAC......................................................................................................2614.004121000
.........................................................................................TCTCGAATAGCGTTGTGACA...............................................................................................................2014.004220000
............................................................................................CGAATAGCGTTGTGACTGAT---GT.......................................................................................................2214.004000013
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GT.......................................................................................................2514.004000013
..........................................................................................CTCGAATAGCGTTGTGACTGAT---GA.......................................................................................................2414.004130000
..........................................................................................CTCGAATAGCGTTGTGACTGAA---A........................................................................................................2313.003030000
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GACT.....................................................................................................2713.003210000
............................................................................................CGAATAGCGTTGTGACTGAT---GG.......................................................................................................2213.003200010
........................................................................................GTCTCGAATAGCGTTGTGACTGA.............................................................................................................2313.003030000
.............................................................................................GAATAGCGTTGTGACTGA.............................................................................................................1813.003200010
............................................................................................CGAATAGCGTTGTGACTGAT---GAC......................................................................................................2313.003000003
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GACTGC...................................................................................................2913.003300000
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCAT.................................................................2213.003000021
......................................................................................................................................TCAGCGGCAGTGCTATTCC...................................................................1913.003020010
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GAA......................................................................................................2613.003210000
..........................................................................................CTCGAATAGCGTTGTGACTGT.............................................................................................................2113.003020001
.........................................................................................TCTCGAATAGCGTTGTGACTGAG---.........................................................................................................2313.003210000
..........................................................................................CTCGAATAGCGTTGTGAC................................................................................................................1812.002020000
.....................................................................................................................................CTCAGCGGCAGTGCTATT.....................................................................1812.002010010
.....................................................................................................................................CTCAGCGGCAGTGCTATTT....................................................................1912.002000110
.........................................................................................TCTCGAATAGCGTTGTGACTA..............................................................................................................2112.002100010
............................................................................................CGAATAGCGTTGTGACTGAT---GAA......................................................................................................2312.002010001
.............................................................................................GAATAGCGTTGTGACTGAT---GA.......................................................................................................2112.002020000
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCC..................................................................2112.002000011
.....................................................................................................................................CTCAGCGGCAGTGCTATTCCAC.................................................................2212.002000110
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GGAA.....................................................................................................2711.001010000
.........................................................................................TCTCGAATAGCGTTGTGTA................................................................................................................1911.001000001
........................................................................................................................................AGCGGCAGTGCTATTCCAGTT...............................................................2111.001010000
..........................................................................................CTCGAATAGCGTTGTGACTGAT---G........................................................................................................2311.001000100
...........................................................................................TCGAATAGCGTTGTGACTGAT---G........................................................................................................2211.001000001
.........................................................................................TCTCGAATAGCGTTGTGACTGAT---GACTGT...................................................................................................2911.001100000
............................................................................................CGAATAGCGTTGTGACTG..............................................................................................................1811.001001000
......................................................................................................................................TCAGCGGCAGTGCTATTCCA..................................................................2011.001010000
...............................................................................................................T---GACTGCATTTGTAATTTTCTC....................................................................................2211.001000010
droWil2
AAAAATA-----------TTTA----C-----------------T-----ACACAAAGTGAACAGTTCGATG---ACTTAAATGCCCAATCTCGAATAGCGTTGTAACTGATG---ATTGTGAT-ATGAGAGAGTCAGCCACTATGCTATACGAGGTGGGGCATTTGTGGGTAA---ACAACCAAATTACGTGAACGTA-TACAACGCATAT--AACTACSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................TCTCGAATAGCGTTGTAACTGA.............................................................................................................221121238.001212381083243869125356632129
.........................................................................................TCTCGAATAGCGTTGTAACTGG.............................................................................................................22114438.0014438144293024
.........................................................................................TCTCGAATAGCGTTGTAACTG..............................................................................................................21110155.00101554312170775713981981
.........................................................................................TCTCGAATAGCGTTGTAACT...............................................................................................................2014197.004197345823011599295
.........................................................................................TCTCGAATAGCGTTGTAACTGAA............................................................................................................2313808.0038083338972429356
.........................................................................................TCTCGAATAGCGTTGTAAC................................................................................................................1911579.00157915627046
.........................................................................................TCTCGAATAGCGTTGTAACTGAT............................................................................................................2311250.001250110059155026
.........................................................................................TCTCGAATAGCGTTGTAACTGAAA---........................................................................................................241451.004511868321746
..........................................................................................CTCGAATAGCGTTGTAACTGA.............................................................................................................211329.0032948270074
...........................................................................................TCGAATAGCGTTGTAACTGATG---........................................................................................................221312.0031211816512998
...........................................................................................TCGAATAGCGTTGTAACTGAT............................................................................................................211182.0018212439964
.........................................................................................TCTCGAATAGCGTTGTAACTGAC............................................................................................................231176.001761724000
.........................................................................................TCTCGAATAGCGTTGTAACTGT.............................................................................................................221172.0017215110416
...........................................................................................TCGAATAGCGTTGTAACTGA.............................................................................................................201163.0016311725786
.........................................................................................TCTCGAATAGCGTTGTAACC...............................................................................................................201147.001471460001
..........................................................................................CTCGAATAGCGTTGTAACTG..............................................................................................................201117.001178105013
...............................................................................................................TG---ATTGTGAT-ATGAGAGAGTC....................................................................................21183.00831723565
........................................................................................................................................AGCCACTATGCTATACGAGGTG..............................................................22181.00813541041
.........................................................................................TCTCGAATAGCGTTGTAACTGC.............................................................................................................22164.0064581203
.........................................................................................TCTCGAATAGCGTTGTAA.................................................................................................................18161.00615153911
......................................................................................................................................TCAGCCACTATGCTATACGAGT................................................................22154.0054362934
.........................................................................................TCTCGAATAGCGTTGTAACTGATT---........................................................................................................24150.0050432014
.........................................................................................TCTCGAATAGCGTTGTAACG...............................................................................................................20132.0032320000
......................................................................................................................................TCAGCCACTATGCTATACGAGG................................................................22127.0027017064
.............................................................................................GAATAGCGTTGTAACTGA.............................................................................................................18123.0023156002
.........................................................................................TCTCGAATAGCGTTGTAACTGAG............................................................................................................23122.0022182020
......................................................................................................................................TCAGCCACTATGCTATACGAG.................................................................21120.0020150113
.........................................................................................TCTCGAATAGCGTTGTAACTGATC---........................................................................................................24119.0019151003
.........................................................................................TCTCGAATAGCGTTGTAACTA..............................................................................................................21119.001933157
...........................................................................................TCGAATAGCGTTGTAACTGG.............................................................................................................20118.0018180000
..........................................................................................CTCGAATAGCGTTGTAACT...............................................................................................................19117.0017115001
..........................................................................................CTCGAATAGCGTTGTAACTGAA............................................................................................................22115.0015312000
.........................................................................................TCTCGAATAGCGTTGTAACTGATG---A.......................................................................................................25114.0014110120
........................................................................................................................................AGCCACTATGCTATACGAGGTGT.............................................................23114.001400275
............................................................................................CGAATAGCGTTGTAACTGA.............................................................................................................19114.001459000
...........................................................................................TCGAATAGCGTTGTAACTGATT---........................................................................................................22114.001483021
.........................................................................................TCTCGAATAGCGTTGTAACTT..............................................................................................................21113.001361015
...........................................................................................TCGAATAGCGTTGTAACTG..............................................................................................................19113.001306205
.........................................................................................TCTCGAATAGCGTTGTAACTGATG---........................................................................................................24111.001150033
...........................................................................................TCGAATAGCGTTGTAACT...............................................................................................................18110.001054001
...............................................................................................................TG---ATTGTGAT-ATGAGAGAGT.....................................................................................20110.001011143
......................................................................................................................................TCAGCCACTATGCTATACGAGGT...............................................................2319.00903033
..........................................................................................CTCGAATAGCGTTGTAACTGAT............................................................................................................2219.00909000
.........................................................................................TCTCGAATAGCGTTGTAACTC..............................................................................................................2119.00920313
..........................................................................................CTCGAATAGCGTTGTAACTGG.............................................................................................................2119.00990000
.........................................................................................TCTCGAATAGCGTTGTAACTGATA---........................................................................................................2418.00851020
.......................................................................................................................................CAGCCACTATGCTATACGAGGT...............................................................2218.00800044
...........................................................................................TCGAATAGCGTTGTAACTGATG---A.......................................................................................................2317.00730220
............................................................................................CGAATAGCGTTGTAACTGAT............................................................................................................2016.00615000
...........................................................................................TCGAATAGCGTTGTAACTGAA............................................................................................................2116.00660000
.........................................................................................TCTCGAATAGCGTTGTAACTGAAC---........................................................................................................2416.00650010
........................................................................................ATCTCGAATAGCGTTGTAACTGA.............................................................................................................2315.00512110
.........................................................................................TCTCGAATAGCGTTGTAACTGAAT---........................................................................................................2414.00422000
........................................................................................................................................AGCCACTATGCTATACGAGGT...............................................................2114.00400040
...............................................................................................................TG---ATTGTGAT-ATGAGAGAGTCT...................................................................................2214.00400220
.........................................................................................TCTCGAATAGCGTTGTAACTGACA---........................................................................................................2414.00440000
.........................................................................................TCTCGAATAGCGTTGTAACA...............................................................................................................2014.00430010
............................................................................................CGAATAGCGTTGTAACTG..............................................................................................................1813.00303000
..........................................................................................CTCGAATAGCGTTGTAACTGAAA---........................................................................................................2313.00303000
...........................................................................................TCGAATAGCGTTGTAACTGATG---T.......................................................................................................2313.00320001
..........................................................................................CTCGAATAGCGTTGTAACTGT.............................................................................................................2113.00303000
...........................................................................................TCGAATAGCGTTGTAACTGATG---ATTG....................................................................................................2613.00300021
................................................................................................................G---ATTGTGAT-ATGAGAGAGTC....................................................................................2012.00210001
.........................................................................................TCTCGAATAGCGTTGTAACTGTA............................................................................................................2312.00210001
...........................................................................................TCGAATAGCGTTGTAACTGATG---AT......................................................................................................2412.00202000
...........................................................................................TCGAATAGCGTTGTAACTGAC............................................................................................................2112.00220000
droVir3
ATAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
ATTAGTTGAAAAG-TTT-CAAA----G-TT-GTTG------GCG-AA---CTTTCAATGG-CTCATTTAACT---GGCTAATTGCCTTCTCTCGAATTGCATTATGGCCGATG-ACACAATTCTGCAAAATC-ATCAGTTGGAATGCCATTCGGGTCAAGGCATTTACGAATCG---CCA-----ACGAGC-----AGCAA------------------ASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................TCTCGAATTGCATTATGGCCGA.............................................................................................................22111060.001106056355515972349592832
.........................................................................................TCTCGAATTGCATTATGGCCG..............................................................................................................2111951.001951937233650319154
..........................................................................................CTCGAATTGCATTATGGCCGA.............................................................................................................211494.0049448800240
........................................................................................................................................AGTTGGAATGCCATTCGGGTCA..............................................................221346.003464216448018146
.....................................................................................................................................ATCAGTTGGAATGCCATTCGGG.................................................................221318.00318409444921155
.....................................................................................................................................ATCAGTTGGAATGCCATTCGG..................................................................211215.0021522322321135
.........................................................................................TCTCGAATTGCATTATGGCC...............................................................................................................201141.0014157116302611
.........................................................................................TCTCGAATTGCATTATGGCCGC.............................................................................................................221104.0010440465022
..........................................................................................CTCGAATTGCATTATGGCCG..............................................................................................................20181.00818000100
.........................................................................................TCTCGAATTGCATTATGGCCGAT............................................................................................................23179.007949071715
........................................................................................................................................AGTTGGAATGCCATTCGGGTC...............................................................21163.006395582511
........................................................................................CTCTCGAATTGCATTATGGCCGA.............................................................................................................23159.0059111123230
.........................................................................................TCTCGAATTGCATTATGGCCGT.............................................................................................................22151.005112062922
...........................................................................................TCGAATTGCATTATGGCCGA.............................................................................................................20141.00412524622
............................................................................................CGAATTGCATTATGGCCGATG-A.........................................................................................................22137.00372722213
.........................................................................................TCTCGAATTGCATTATGGC................................................................................................................19133.00332102613
...............................................................................................................TG-ACACAATTCTGCAAAATC-ATC....................................................................................23128.00284010230
.........................................................................................TCTCGAATTGCATTATGGCCGAA............................................................................................................23127.00271701603
.....................................................................................................................................ATCAGTTGGAATGCCATTCG...................................................................20126.00266034013
.....................................................................................................................................ATCAGTTGGAATGCCATTCGGGT................................................................23121.00214003014
.........................................................................................TCTCGAATTGCATTATGGCCGG.............................................................................................................22119.00190061210
.........................................................................................TCTCGAATTGCATTATGGCCT..............................................................................................................21112.0012309000
...........................................................................................TCGAATTGCATTATGGCCG..............................................................................................................19111.0011702200
.........................................................................................TCTCGAATTGCATTATGGCCGATG-..........................................................................................................24110.0010501202
.............................................................................................GAATTGCATTATGGCCGA.............................................................................................................1819.009500310
......................................................................................................................................TCAGTTGGAATGCCATTCGGG.................................................................2118.008302111
........................................................................................................................................AGTTGGAATGCCATTCGGGT................................................................2018.008202103
.....................................................................................................................................ATCAGTTGGAATGCCATTCGGGA................................................................2317.007000106
........................................................................................CTCTCGAATTGCATTATGGCCG..............................................................................................................2217.007402100
..........................................................................................CTCGAATTGCATTATGGCCGAT............................................................................................................2217.007700000
............................................................................................CGAATTGCATTATGGCCGATG-..........................................................................................................2117.007401200
............................................................................................CGAATTGCATTATGGCCGA.............................................................................................................1917.007700000
..........................................................................................CTCGAATTGCATTATGGCC...............................................................................................................1916.006600000
.....................................................................................................................................ATCAGTTGGAATGCCATTCGGT.................................................................2216.006003003
.........................................................................................................................................GTTGGAATGCCATTCGGGTCA..............................................................2116.006600000
......................................................................................................................................TCAGTTGGAATGCCATTCGGGT................................................................2215.005301010
.........................................................................................TCTCGAATTGCATTATGGCCGATT-..........................................................................................................2415.005401000
.........................................................................................TCTCGAATTGCATTATGGCCGAG............................................................................................................2315.005500000
........................................................................................................................................AGTTGGAATGCCATTCGGG.................................................................1914.004101200
.........................................................................................TCTCGAATTGCATTATGG.................................................................................................................1814.004101110
.........................................................................................TCTCGAATTGCATTATGGCCGAC............................................................................................................2314.004400000
.....................................................................................................................................ATCAGTTGGAATGCCATTCGGC.................................................................2214.004100021
........................................................................................CTCTCGAATTGCATTATGGCCGC.............................................................................................................2313.003001200
.........................................................................................TCTCGAATTGCATTATGGCCGAAA-..........................................................................................................2413.003300000
..........................................................................................................................................TTGGAATGCCATTCGGGTCA..............................................................2013.003200001
......................................................................................................................................TCAGTTGGAATGCCATTCGGGTC...............................................................2313.003000012
.....................................................................................................................................ATCAGTTGGAATGCCATTCGT..................................................................2113.003100101
.........................................................................................TCTCGAATTGCATTATGGCCGTC............................................................................................................2313.003100101
.....................................................................................................................................ATCAGTTGGAATGCCATTCGGA.................................................................2212.002000002
............................................................................................CGAATTGCATTATGGCCGATG-AA........................................................................................................2312.002001001
................................................................................ATTGCCTTCTCTCGAATTGCA.......................................................................................................................2112.002000101
..........................................................................................CTCGAATTGCATTATGGCCGAA............................................................................................................2212.002200000
........................................................................................................................................AGTTGGAATGCCATTCGGGTCC..............................................................2212.002002000
.........................................................................................TCTCGAATTGCATTATGGCCA..............................................................................................................2112.002101000
......................................................................................................................................TCAGTTGGAATGCCATTCGGGTCA..............................................................2412.002100010
.........................................................................................TCTCGAATTGCATTATGGCCGAAT-..........................................................................................................2412.002200000
......................................................................................................................................TCAGTTGGAATGCCATTCGG..................................................................2012.002200000
.............................................................................................GAATTGCATTATGGCCGATG-A.........................................................................................................2112.002200000
.........................................................................................TCTCGAATTGCATTATGGCCC..............................................................................................................2112.002000020
.........................................................................................TCTCGAATTGCATTATGGCCTC.............................................................................................................2212.002000200
.....................................................................................................................................ATCAGTTGGAATGCCATTCGGGAT...............................................................2412.002000200
.....................................................................................................................CAATTCTGCAAAATC-ATC....................................................................................1811.001000010
.........................................................................................................................................GTTGGAATGCCATTCGGGT................................................................1911.001100000
..........................................................................................CTCGAATTGCATTATGGCCGATT-..........................................................................................................2311.001100000
........................................................................................................................................AGTTGGAATGCCATTCGGGTCAA.............................................................2311.001001000
.........................................................................................TCTCGAATTGCATTATGGCCGGG............................................................................................................2311.001100000
.........................................................................................TCTCGAATTGCATTATGGCCGTA............................................................................................................2311.001000100
.........................................................................................TCTCGAATTGCATTATGGCA...............................................................................................................2011.001001000
droGri2
AGTTTAT-----------T-------A-CT----GAAATGG----AAAG-TTGCAA--AG--T---TTGAAT---GGCTTATTGCCTTTTCTCGAATTGCATTGTGACTGATG-AAAAT----TTAGAAATTCATCAGTTAAAATGCCATTCGAGTTAAGGCACTTATG-----------CATTAACAACC-----AAAAATCATTTGTATT--A-----SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................TCTCGAATTGCATTGTGACTGA.............................................................................................................221267.0026717988
.........................................................................................TCTCGAATTGCATTGTGACTG..............................................................................................................21188.00884741
.........................................................................................TCTCGAATTGCATTGTGACT...............................................................................................................20137.00372611
.........................................................................................TCTCGAATTGCATTGTGACTGAT............................................................................................................23123.0023203
..........................................................................................CTCGAATTGCATTGTGACTGA.............................................................................................................21116.0016160
...........................................................................................TCGAATTGCATTGTGACTGAT............................................................................................................2115.00541
..........................................................................................CTCGAATTGCATTGTGACTG..............................................................................................................2015.00550
.........................................................................................TCTCGAATTGCATTGTGA.................................................................................................................1815.00505
.........................................................................................TCTCGAATTGCATTGTGACTGAA............................................................................................................2313.00321
..........................................................................................CTCGAATTGCATTGTGACT...............................................................................................................1912.00220
.........................................................................................TCTCGAATTGCATTGTGACTGATG-..........................................................................................................2412.00202
...........................................................................................TCGAATTGCATTGTGACTGA.............................................................................................................2012.00220
.........................................................................................TCTCGAATTGCATTGTGACTGAG............................................................................................................2312.00220
............................................................................................CGAATTGCATTGTGACTGATG-..........................................................................................................2111.00110
..........................................................................................CTCGAATTGCATTGTGACTGAT............................................................................................................2211.00101
.........................................................................................TCTCGAATTGCATTGTGACTGG.............................................................................................................2211.00110
.........................................................................................TCTCGAATTGCATTGTGACTGATC-..........................................................................................................2411.00101
............................................................................................CGAATTGCATTGTGACTGAT............................................................................................................2011.00110
..............................................................................................AATTGCATTGTGACTGATG-A.........................................................................................................2011.00110
........................................................................................................................................AGTTAAAATGCCATTCGAGTT...............................................................2111.00101
...........................................................................................TCGAATTGCATTGTGACTG..............................................................................................................1911.00101
.........................................................................................................................................GTTAAAATGCCATTCGAGTTA..............................................................2111.00110
........................................................................................................................................AGTTAAAATGCCATTCGAGTTA..............................................................2211.00101
.........................................................................................TCTCGAATTGCATTGTGACTGATT-..........................................................................................................2411.00110

Generated: 10/20/2015 at 10:19 PM