der_1117

Name	Class	Family	Strand
(TTG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAACAACCACAACAACAACAACAACATCAACAACAACAACAACAACAAAATGTACTACTACAACAACAACAACAACAACTACAATTAAGTAGCGTCATAACAACAACAAGTACAACAGCAACAGCCAGTAACAATATGATTAATAATATTAATAATAAAAGTATCATAAACGCTGTAATTG ************************************************************..........................................................((((....)))).................****************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V107 male body	V108 head	M055 female body	M057 embryo
..................................TACGTGCCAGTCTCATGTGAGT...................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0
............CTATCAGCAGCTAATGCAGCC..........................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0
.............................................................................................................................TACTACAACAACAACAACAACAAC......................................................................................................	24	0	3	0.33	1	0	0	1	0
............................................................................................................................CTACTACAACAACAACAACAAC.........................................................................................................	22	0	3	0.33	1	0	0	0	1
.....................................................................ACAACAACCACAACAACAACCACAACA...........................................................................................................................................................	27	1	4	0.25	1	0	0	1	0
.....................................................................................................AACAACAACAACAACAAAATGT................................................................................................................................	22	0	5	0.20	1	0	0	1	0
..............................................................AACAACAACAACAACCACAAC........................................................................................................................................................................	21	0	7	0.14	1	0	0	1	0
.........................................................................................AACAACATCAACAACAACAAC.............................................................................................................................................	21	0	8	0.13	1	0	0	0	1
.....................................................................................................................................CAACAACAACAACAACTAC...................................................................................................	19	0	11	0.09	1	0	0	0	1
...................................................................CAACAACAACCACAACAAC.....................................................................................................................................................................	19	0	17	0.06	1	0	0	1	0

GCCACGCTGGCGGATAGTCGTCGATTACGTCGGGATGCACGGTCAGAGTACACTCATAGGGGTTGTTGTTGTTGTTGGTGTTGTTGTTGTTGTTGTAGTTGTTGTTGTTGTTGTTGTTTTACATGATGATGTTGTTGTTGTTGTTGTTGATGTTAATTCATCGCAGTATTGTTGTTGTTCATGTTGTCGTTGTCGGTCATTGTTATACTAATTATTATAATTATTATTTTCATAGTATTTGCGACATTAAC ****************************************************************************************************..........................................................((((....)))).................************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V040 embryo	M055 female body	V107 male body	GSM1528801 follicle cells	V108 head
..............................................................................................................................................................................................................................ATTATTTTCATAGTTTTTG..........	19	1	2	0.50	1	1	0	0	0	0
............................................................................................................................................................................................................................TAATTATTTTCATAGTTTTTG..........	21	2	4	0.25	1	1	0	0	0	0
.........................................................AGGGGTTGTTGCGGTAGTTGG.............................................................................................................................................................................	21	3	5	0.20	1	0	0	1	0	0
......................................................................................................TGTTGTTGTTGTTGTTTTAC.................................................................................................................................	20	0	7	0.14	1	0	1	0	0	0
..........................................................................................................................................................................................................................TATAATTATTTTCATAGTTTTTG..........	23	3	8	0.13	1	1	0	0	0	0
....................................................................................TGTTGTTCTTGTAGTTGTTGTTGTTGG............................................................................................................................................	27	2	9	0.11	1	0	0	0	1	0
..............................................................................................................................................................................................................................ATTATTTTCATAGTTTTTGA.........	20	2	9	0.11	1	1	0	0	0	0
...........................................................................................................................................................................................................................ATACTTATTTTCATAGTTTTTG..........	22	3	10	0.10	1	1	0	0	0	0
.............................................................................................................................................................................................ATGTCGGTAGTTGTTATAC...........................................	19	3	20	0.05	1	0	0	0	0	1
...................................................................................................................................................................CCCTATTGTTGTTGTTCACGT...................................................................	21	3	20	0.05	1	0	1	0	0	0
....................................................................................................GTTGTTGTTGTTGTTGTTTT...................................................................................................................................	20	0	20	0.05	1	0	0	0	0	1
...............................................................................GTTGTTGTTGTTGTTGTAGT........................................................................................................................................................	20	0	20	0.05	1	0	1	0	0	0

Species	Coordinate	ID	Alignment
droEre2	scaffold_4845:12603580-12603830 -	der_1117	CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAA------------------------CCACAACAACAACAACAA---------CATCAAC---------AACAACAACAAC---AACAAAATGTACTACTACAACAACAACAAC----------------------------AACAACTACAATTAAGTAGCGTCATAACAACAACAAG---TACAAC---A------GCAACAGCCAGTAACA---ATATGATTAATAA---------------------------TATTAATAA---TAA---AAG---TATCATAAACGC------TGTAATTG
droYak3	2R:18221512-18221756 -	dya_612	CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAA---------------------CCACCACAA---CAACAA---------CATCAAC---------AACAACAACAAC---AACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGTCATAACAACAACAACAAGTACAAC---A------GCAACAGCCAGTAACA---ATATGATTAATAA---------------------------TATTAATAA---TAA---AAG---TATCATAAACGC------TGTAATTG
droSec2	scaffold_1:10750447-10750685 +		CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CCA------------------------CCACCACAACAACAACAA---------CA---ACAT---------CA------AC---AACAAAATGTACTACTACAACAACAAC---------------------------AAC-------TACAATTAAGTAGCGTCATAACAACAACAAG---TACAAC---A------GCAACAGCCAGTAACA---ATATGATTAATAATAA------------------------TATTAATAA---TAA---AGG---TATCATAAACGC------TGTTATGG
droSim2	2r:13901553-13901794 +	dsi_17869	CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACCA------------------CCACCACAACAA---------------CAACAACAT---------CA------AC---AACAAAATGTACTACTACAACAACAAC---------------------------AAC-------TACAATTAAGTAGCGTCATAACAACAACAAG---TACAAC---A------GCAACAGCCAGTAACA---ATATGATTAATAATAA------------------------TATTAATAA---TAA---AGG---TATCATAAACGC------TGTTATGG
dm3	chr2R:13249553-13249797 +		CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACCA---------------------CCACCACAA---CAACAA---------CAACAAC---------AACAACATCAAC---AACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGTCATAACAACAACAAG---TACAAC---A------GCAACAGCCAGTAACA---ATATGATTAATAATAA------------------------TATTAATAA---TAA---AGG---TATCATAAACGC------TGTTATGG
droEug1	scf7180000409672:1866264-1866517 -		CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACAAC---------C------ACCACCACAACAACAACAA---------CAACTACAT---------CAACAACAAC---AACAATCTGTACTACTACAACAACAAC---------------------------AAC-------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATCTAATTAATAA---------------------------TATTAATAA---TAA---AAG---TATCATAAACGC------TGTAATTG
droBia1	scf7180000301754:5499567-5499808 +		CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CCA------------------------CCACCACAA---CAACAA---------CAACTACAT---------CAACAACAAC---AACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAG---TACAAC---A------GCAACAGCCAGTAATATCAATATGATTAATAA---------------------------TATTAACAA---TAA---AAG---TATCATGAACGC------TGTAATCG
droTak1	scf7180000415345:312637-312878 +		CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAA------------------------CCACCACAACAACAACAA---------CAACTACAT---------CAACAACAAC---AACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAA---------------------------TATTAATAA---TAA---AAG---TATCATAAACGC------TGTAATTG
droEle1	scf7180000491214:1058497-1058738 -		CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAA------------------------CCACAACAACAACAACAA---------CAACTACAT---------CAACA---AC---AACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAT---------------------------TATTAATAACAATAA---AAG---TACCATAAATGC------TGTAATTG
droRho1	scf7180000780084:55806-56050 -		CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAA------------------------CCACAACAACAACAACAA---------CAACTACAT---------CAACAACAACAACAACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAT---------------------------TATTAATAA---TAA---AAG---TACCATAAACGC------TGTAATTG
droFic1	scf7180000453948:2197718-2197977 -		CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACAAC---------C------ACCACCACAACAACAACAA---------CAACTACAT---CAACAACAACAACAAC---AACAAAATGTACTACTACAACA---AC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAA---------------------------TATAAATAACAACAAACAAAG---TATCATGAACGC------TGTAATTG
droKik1	scf7180000302476:2955998-2956230 -		CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAA------------------------CCACAACAACAACAACAA---------CAACTACAT---------CAACAACAAC---------------TACTACAACAACAAC---------------------------TAC-------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAA---------------------------TATTAATAA---TAA---AAG---TACCATAAACGC------TGTAATTG
droAna3	scaffold_13266:13378933-13379198 -	dan_1980	CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCATATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACTACAACAACAACCAGTACAACCACAACAACAACAACAA---------CAACTACAT---------CAACAACAAC---AACAATCTGTATTACTACAACAACAAC-------------------------------------TACAATTAAGTAACGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATAATTAATAA---------------------------TATTAATAA---TAA---TAA---TACCATAAACGC------TGTAATTG
droBip1	scf7180000396759:2758012-2758271 +		CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCATATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACTAC---------CAGTACAACCACAACAACAACAACAA---------CAACTACAT---------CAACAACAACAACAACAAAATGTATTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAA---------------------------TATTAATAA---TAA---TAA---TACCATAAATGC------TGTAACTG
dp5	3:16806434-16806732 +		CGGTGCGACTACGTATCAGCAGCTAATGCAGCCCTATGTTCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACAA------------------CTACAACAACAACATCAACAACAACAACAA---------------CCACAACAAC---AACAACAAGTACTACTACAACAACAACAACAAC-------------------------AACAATTAGCGTTAAGTAGCGCCATAACAACAACAAC---TACAAC---AGCAACAACAACAGCCAGTAATA---ATATTAATAATAACAACAACAACAACAACAACAACAGCAGTAATAACAA---TAA---CGCCATTCACGTAAATGC------TGTAATTG
droPer2	scaffold_13:85295-85499 +		CGCCGCCGCCGCCG--CAGCAGCCA----------------CAGTCGCA------------CAACAACAACAA---CAGCAGCAACAGCAA------------CAGTTGCAA---CAGCTG---------CAACTGC---------AACAGCAACAGC---AGCAGAATCAACAACAACAACAGCAAC-------------------------------------AACAAC----------AACAACAACAACAAC---AGCAGC---A------GCAACATTCAGTAGCA---GCACTA------G---------------------------CACCAGTAA---TAC---CAG---TAGCAAATACAC------TACAACTA
droWil2	scf2_1100000004822:517111-517376 -	dwi_2165	CGGTGCGACAACCTATCAACAATTAATGCAGCCCTTTGTGCCAGTCTCATGTGAGTATGACCAACAGCAACAG---CAAAAGCTACAACAACA---------ACTACAACAACAACAACAA---------CAACCACTACTACTACAACAACAACAAC---AACAACAAGAACAACTAGAACAACAAC---------------------------AAC-CACATGTTGCATTAAGTAGCGCCATAATAACAACAAC---AACTGCTGCTGCAACAGCAACAAGCAGCAGTA---ATTTAAATAATAA---------------------------TAATATTAA---TCA------------------------------AATTG
droVir3	scaffold_9769:2277-2508 +		---------------TCAGCAATTAGTACTGCCTCGCGAGCTGGCTATTCAAATATACCAGCAGCAACAACAG---CAG------------------------CAGCAACAGCAACAACAG---------CAGCAGCAA---------CAGCAACAAC---AGCAGCAGCAACAGCAACAACAGCAGCAGCAACAGCAACAACACCAGCAGCAACAGCA---------------GC-----AGCAACAGCAACAAG---AGCAG-------------------CAGCAACA---ACAGCAGCAGCAA---------------------------CACCAGTAC---CAA---CAG---CAGCATCAG--C------AACAGCAA
droMoj3	scaffold_6496:19300203-19300390 -		CGGTGCGACAACCTATCAACAATTAATGCAGCCCTACGTGCCAGTGTCATGTGAGTATCCCCCACAACAACAA---CAA---------------------------------------------------------CAT---------CAACAACAAC---------------------AACAACAAC-------------------------------------AACCAATATGTAGCGCCATAACAACAACAAC---TACAACAACAGCAGCAACAACAGCCAGTAATA---ATAATAATAAT---------------------------------------------------------------GCTGTAACTGTAACTG
droGri2	scaffold_15203:3640233-3640450 +		C----------------AACAGCAACAGCAACACTACGAGTAGAAGCCAC------AATACCAGCAATAACAACAGCACAACTA---------------------ACAACAACAA---------------CAA---------------CAACAGCAGC---AGCAGCAATAACAACAACAACAGCAACAGCAACAGTAACAATAATAATAATCACAGCA---------------GCAGCAACAC-----------------AAAC-------------ACAAACAGCAACA---ACAGCACCAACAA---------------------------CAACCATAA---TGA---TAA---TGCCATCAATAG------CAATAACA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAA------------------------CCACAACAACAACAACAA---------CATCAAC---------AACAACAACAAC---AACAAAATGTACTACTACAACAACAACAAC----------------------------AACAACTACAATTAAGTAGCGTCATAACAACAACAAG---TACAAC---A------GCAACAGCCAGTAACA---ATATGATTAATAA---------------------------TATTAATAA---TAA---AAG---TATCATAAACGC------TGTAATTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................TACGTGCCAGTCTCATGTGAGT........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
............CTATCAGCAGCTAATGCAGCC...............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................TACTACAACAACAACAAC----------------------------AACAAC...............................................................................................................................................................	24	3	0.33	1	1	0	0	0	0	0	0
............................................................................................................................................................................CTACTACAACAACAACAAC----------------------------AAC..................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0
..................................................................................................................................................AACAACAACAAC---AACAAAATGT.....................................................................................................................................................................................................................	22	5	0.20	1	1	0	0	0	0	0	0
..............................................................AACAACAACAA---CAA------------------------CCACAAC..................................................................................................................................................................................................................................................................................	21	7	0.14	1	1	0	0	0	0	0	0
....................................................................................................................AACAA---------CATCAAC---------AACAACAAC.....................................................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................CAACAACAAC----------------------------AACAACTAC............................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0	0
...................................................................CAACAA---CAA------------------------CCACAACAAC...............................................................................................................................................................................................................................................................................	19	17	0.06	1	1	0	0	0	0	0	0

droYak3

CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAA---------------------CCACCACAA---CAACAA---------CATCAAC---------AACAACAACAAC---AACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGTCATAACAACAACAACAAGTACAAC---A------GCAACAGCCAGTAACA---ATATGATTAATAA---------------------------TATTAATAA---TAA---AAG---TATCATAAACGC------TGTAATTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................ACAACAACAAGTACAAC---A------GCAACA.......................................................................................................	24	2	2.00	4	0	0	0	0	0	0	0	0	0	0	4
...................................................................CAACAA---CAACAA---------------------CCACCACAA---CAACAA---------C.............................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................CAA---CAACAA---------CATCAAC---------AACAACAACA....................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2
.........................................................................................................................................................................................................................................................CAACAACAAGTACAAC---A------GCAACAGCC....................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................ACAA---------CATCAAC---------AACAACAACAAC---...............................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................ACAA---CAACAA---------CATCAAC---------AACAA.........................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................C---------AACAACAACAAC---AACA...........................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1

droSec2

CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CCA------------------------CCACCACAACAACAACAA---------CA---ACAT---------CA------AC---AACAAAATGTACTACTACAACAACAAC---------------------------AAC-------TACAATTAAGTAGCGTCATAACAACAACAAG---TACAAC---A------GCAACAGCCAGTAACA---ATATGATTAATAATAA------------------------TATTAATAA---TAA---AGG---TATCATAAACGC------TGTTATGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................................................C---A------GCAACAGCCAGTAACA---AT........................................................................................	20	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................AGCGTCATAACAACAACAA.................................................................................................................................	19	1	1.00	1	0	0	1	0
.......................................GCCAGTCTCATGTGAGTAT......................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
............................................................................................................ACAACAACAACAA---------CA---ACAT---------CA------....................................................................................................................................................................................................................................	21	5	0.20	1	1	0	0	0

droSim2

CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACCA------------------CCACCACAACAA---------------CAACAACAT---------CA------AC---AACAAAATGTACTACTACAACAACAAC---------------------------AAC-------TACAATTAAGTAGCGTCATAACAACAACAAG---TACAAC---A------GCAACAGCCAGTAACA---ATATGATTAATAATAA------------------------TATTAATAA---TAA---AGG---TATCATAAACGC------TGTTATGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......GACCGCCTATCAGCAGCTAA......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................ACAAC---------------------------AAC-------TACAATTAAG.....................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ACAA---CAACAACCA------------------CCACCAC..................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACCA---------------------CCACCACAA---CAACAA---------CAACAAC---------AACAACATCAAC---AACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGTCATAACAACAACAAG---TACAAC---A------GCAACAGCCAGTAACA---ATATGATTAATAATAA------------------------TATTAATAA---TAA---AGG---TATCATAAACGC------TGTTATGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................ATGATTAATAATAA------------------------TATTAA............................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GCGACCGCCTATCAGCAGCTAAT.....................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TACGTGCCAGTCTCATGTGAGTATC.....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................AG---TACAAC---A------GCAACAGCCAG..................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................CAAAATGTACTACTACAACAACAAC-------------------------------------T..............................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CTACGTGCCAGTCTCAT..............................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................CAA---------CAACAAC---------AACAACATCA....................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................CCCCAACAACAACAA---CAACCA---------------------CACA.....................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CACAA---CAACAA---------CAACAAC---------AAC...........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CACAA---CAACAA---------CAACAAC---------..............................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................CAACAACAA---CAACCA---------------------CCAG.....................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................AACAACAACAA---CAACCA---------------------C........................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................CAACAA---------CAACAAC---------AACAACA.......................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCCTACGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACAAC---------C------ACCACCACAACAACAACAA---------CAACTACAT---------CAACAACAAC---AACAATCTGTACTACTACAACAACAAC---------------------------AAC-------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATCTAATTAATAA---------------------------TATTAATAA---TAA---AAG---TATCATAAACGC------TGTAATTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CCA------------------------CCACCACAA---CAACAA---------CAACTACAT---------CAACAACAAC---AACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAG---TACAAC---A------GCAACAGCCAGTAATATCAATATGATTAATAA---------------------------TATTAACAA---TAA---AAG---TATCATGAACGC------TGTAATCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAA------------------------CCACCACAACAACAACAA---------CAACTACAT---------CAACAACAAC---AACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAA---------------------------TATTAATAA---TAA---AAG---TATCATAAACGC------TGTAATTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAA------------------------CCACAACAACAACAACAA---------CAACTACAT---------CAACA---AC---AACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAT---------------------------TATTAATAACAATAA---AAG---TACCATAAATGC------TGTAATTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAA------------------------CCACAACAACAACAACAA---------CAACTACAT---------CAACAACAACAACAACAAAATGTACTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAT---------------------------TATTAATAA---TAA---AAG---TACCATAAACGC------TGTAATTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGGTGCGACCGCCTATCAGCAGCTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACAAC---------C------ACCACCACAACAACAACAA---------CAACTACAT---CAACAACAACAACAAC---AACAAAATGTACTACTACAACA---AC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAA---------------------------TATAAATAACAACAAACAAAG---TATCATGAACGC------TGTAATTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCCTATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAA------------------------CCACAACAACAACAACAA---------CAACTACAT---------CAACAACAAC---------------TACTACAACAACAAC---------------------------TAC-------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAA---------------------------TATTAATAA---TAA---AAG---TACCATAAACGC------TGTAATTG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCATATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACTACAACAACAACCAGTACAACCACAACAACAACAACAA---------CAACTACAT---------CAACAACAAC---AACAATCTGTATTACTACAACAACAAC-------------------------------------TACAATTAAGTAACGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATAATTAATAA---------------------------TATTAATAA---TAA---TAA---TACCATAAACGC------TGTAATTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................AACAACAA---CAACAACTACAAC.......................................................................................................................................................................................................................................................................................................	21	19	0.11	2	0	2	0	0	0	0
...................................................................CAACAA---CAACAACTACAAC.......................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
.............................................................CAACAACAACAA---CAACAACTACAAC.......................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0
..................................................................ACAACAA---CAACAACTACAAC.......................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...........................................................................................................AACAACAACAACAA---------CAACT.........................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droBip1

CGGTGCGACCGCCTATCAGCAGTTAATGCAGCCATATGTGCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACTAC---------CAGTACAACCACAACAACAACAACAA---------CAACTACAT---------CAACAACAACAACAACAAAATGTATTACTACAACAACAAC-------------------------------------TACAATTAAGTAGCGCCATAACAACAACAAC---TACAAC---A------GCAACAGCCAGTAATA---ATATGATTAATAA---------------------------TATTAATAA---TAA---TAA---TACCATAAATGC------TGTAACTG	Size	Hit Count	Total Norm	Total
No Reads

dp5

CGGTGCGACTACGTATCAGCAGCTAATGCAGCCCTATGTTCCAGTCTCATGTGAGTATCCCCAACAACAACAA---CAACAACAA------------------CTACAACAACAACATCAACAACAACAACAA---------------CCACAACAAC---AACAACAAGTACTACTACAACAACAACAACAAC-------------------------AACAATTAGCGTTAAGTAGCGCCATAACAACAACAAC---TACAAC---AGCAACAACAACAGCCAGTAATA---ATATTAATAATAACAACAACAACAACAACAACAACAGCAGTAATAACAA---TAA---CGCCATTCACGTAAATGC------TGTAATTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................GTTCCAGTCTCATGTGAGT........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................CAACAACAA---------------CCACAACAAC---AACAAC.........................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................C---TACAAC---AGCAACAACAACA.......................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
........................................................................A---CAACAACAA------------------CTACAACAACA..............................................................................................................................................................................................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................CAACAA---------------CCACAACAAC---AACAA..........................................................................................................................................................................................................................	21	16	0.06	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................CATCAACAACAACAACAA---------------C...........................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................ACAACAA---CAACAACAA------------------CTAC.....................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................ACATCAACAACAACAACA............................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................AATAACAACAACAACAACAACA............................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

CGCCGCCGCCGCCG--CAGCAGCCA----------------CAGTCGCA------------CAACAACAACAA---CAGCAGCAACAGCAA------------CAGTTGCAA---CAGCTG---------CAACTGC---------AACAGCAACAGC---AGCAGAATCAACAACAACAACAGCAAC-------------------------------------AACAAC----------AACAACAACAACAAC---AGCAGC---A------GCAACATTCAGTAGCA---GCACTA------G---------------------------CACCAGTAA---TAC---CAG---TAGCAAATACAC------TACAACTA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................AACAGC---AGCAGAATCAACAAC................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.GCCGCCGCCGCCG--CAGCAGCC........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................AACAACAACAGCAAC-------------------------------------AAC............................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................CAACAACAACAAC---AGCAGC---....................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................AC-------------------------------------AACAAC----------AACAACAACAACAAC---AGC..........................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
...............................................................ACAACAACAA---CAGCAGCAAC..........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................AC-------------------------------------AACAAC----------AACAACAACAACAAC---AGCAG........................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................ACAACAAC---AGCAGC---A------GCAACA.......................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................AACAACAACAACAAC---AGCAGC---A------.............................................................................................................	22	20	0.05	1	0	0	1	0	0	0

droWil2

CGGTGCGACAACCTATCAACAATTAATGCAGCCCTTTGTGCCAGTCTCATGTGAGTATGACCAACAGCAACAG---CAAAAGCTACAACAACA---------ACTACAACAACAACAACAA---------CAACCACTACTACTACAACAACAACAAC---AACAACAAGAACAACTAGAACAACAAC---------------------------AAC-CACATGTTGCATTAAGTAGCGCCATAATAACAACAAC---AACTGCTGCTGCAACAGCAACAAGCAGCAGTA---ATTTAAATAATAA---------------------------TAATATTAA---TCA------------------------------AATTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................................................ATAATAACAACAAC---AACTGCTGCTG..................................................................................................................	25	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................AAC-CACATGTTGCATTAAGTAGCG................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
..................................................GTGAGTATGACCAACAGC............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................AACAAGCAGCAGTA---ATTTAAATAAT...............................................................................	25	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................CTAGAACAACAAC---------------------------AAC-CACATGT..............................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.....................ATTAATGCAGCCCTTTGTGCCA.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................GACCAACAGCAACAG---CAA.................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	1	0	0	0
..........................................................................................................................................................CAAC---AACAACAAGAACAAC................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................ACAAC---AACAACAAGAACAAC................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0

droVir3

---------------TCAGCAATTAGTACTGCCTCGCGAGCTGGCTATTCAAATATACCAGCAGCAACAACAG---CAG------------------------CAGCAACAGCAACAACAG---------CAGCAGCAA---------CAGCAACAAC---AGCAGCAGCAACAGCAACAACAGCAGCAGCAACAGCAACAACACCAGCAGCAACAGCA---------------GC-----AGCAACAGCAACAAG---AGCAG-------------------CAGCAACA---ACAGCAGCAGCAA---------------------------CACCAGTAC---CAA---CAG---CAGCATCAG--C------AACAGCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................GCTATTCAAATATACCAGCAGC...............................................................................................................................................................................................................................................................................................................................	22	11	3.45	38	0	0	12	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	10	0	2	0	0	1	3	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................	26	11	2.18	24	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAGCA..............................................................................................................................................................................................................................................................................................................................	23	11	2.00	22	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	1	0	0	0	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATATACCAGCAGCAACAAC.........................................................................................................................................................................................................................................................................................................................	21	10	1.80	18	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	5	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAGCAA.............................................................................................................................................................................................................................................................................................................................	24	11	1.73	19	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	1	3	0	0	0	1	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATATACCAGCAGCAACAACAG---CA..................................................................................................................................................................................................................................................................................................................	25	10	1.70	17	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	2	0	2	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAG................................................................................................................................................................................................................................................................................................................................	21	11	1.64	18	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	1	3	0	0	0	2	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATATACCAGCAGCAACAA..........................................................................................................................................................................................................................................................................................................................	20	10	1.60	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	1	1	6	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAGCAAC............................................................................................................................................................................................................................................................................................................................	25	11	1.55	17	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	3	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
..................................................AAATATACCAGCAGCAACAACA........................................................................................................................................................................................................................................................................................................................	22	10	1.10	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAGCAACAA..........................................................................................................................................................................................................................................................................................................................	27	10	0.80	8	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCAGCAATTAGTACTGCCTCGC...........................................................................................................................................................................................................................................................................................................................................................	22	9	0.67	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCAGCAATTAGTACTGCCTCGCGAGC.......................................................................................................................................................................................................................................................................................................................................................	26	9	0.56	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAGCAACAACA........................................................................................................................................................................................................................................................................................................................	29	10	0.50	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAGCAACAAC.........................................................................................................................................................................................................................................................................................................................	28	10	0.50	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATATACCAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................	19	12	0.42	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTACTGCCTCGCGAGCTG.....................................................................................................................................................................................................................................................................................................................................................	18	12	0.42	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATATACCAGCAGCAACAACAG---....................................................................................................................................................................................................................................................................................................................	23	10	0.40	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATATACCAGCAGCAACAACAG---C...................................................................................................................................................................................................................................................................................................................	24	10	0.40	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCAGCAATTAGTACTGCCTCGCGAGCTG.....................................................................................................................................................................................................................................................................................................................................................	28	9	0.33	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAC---CAA---CAG---CAGCATCAG--C------A.......	20	11	0.27	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................AGCAACAACAG---CAG------------------------CAGCA....................................................................................................................................................................................................................................................................................	19	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CTATTCAAATATACCAGCAGCAACAACA........................................................................................................................................................................................................................................................................................................................	28	10	0.20	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CTATTCAAATATACCAGCAGCAAC............................................................................................................................................................................................................................................................................................................................	24	11	0.18	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTACTGCCTCGCGAGCTGGCT..................................................................................................................................................................................................................................................................................................................................................	21	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................AGCAGCAACAACAG---CAG------------------------C........................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCAGCAATTAGTACTGCCTCGCGAG........................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTAGTACTGCCTCGCGAGCTGGCTA.................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TAGTACTGCCTCGCGAGCTGGCTAT................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCAGCAATTAGTACTGCCTCGCGA.........................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCAGCAATTAGTACTGCCTCGCG..........................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCAGCAATTAGTACTGCCT..............................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................ATTCAAATATACCAGCAGCAACAACA........................................................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATATACCAGCAGCAACAACAG---CAG------------------------CA.......................................................................................................................................................................................................................................................................................	28	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GCAGCAACAACAG---CAG------------------------CAGCA....................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AG---------CAGCAGCAA---------CAGCAACAAC---...............................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CAGCAACAGCAACAACAG---------CAG...........................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCAGCAACAGCA---------------GC-----AGCAACAGC......................................................................................................................................	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TATACCAGCAGCAACAACAG---CA..................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TAGTACTGCCTCGCGAGCTG.....................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................AAATATACCAGCAGCAACAACAG---CAA------------------------.........................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTAGTACTGCCTCGCGAGCTG.....................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AG---CAGCATCAG--C------AACAGCA.	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATATACCAGCAGCAACAACAG---CAG------------------------.........................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CAAG---AGCAG-------------------CAGCAACA---ACAGCAG...................................................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TTCAAATATACCAGCAGCAACAAC.........................................................................................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................AG---CAG------------------------CAGCAACAGCAACAAC.........................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TATACCAGCAGCAACAACAG---....................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AGTACTGCCTCGCGAGCTGG....................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................AGCAACAAC---AGCAGCAGCAA....................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AACAGCAGCAGCAACAGCA..........................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATATACCAGCAGCAACAACAT---....................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................ATTCAAATATACCAGCAGCAACAAC.........................................................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATATACCAGCAGCAACAACAG---A...................................................................................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TATTCAAATATACCAGCAGCAACAACA........................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCA.................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CTATTCAAATATACCAGCAGC...............................................................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAGCAAG............................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAGCAT.............................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................C-----AGCAACAGCAACAAG---AGCAG-------------------.....................................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GAGCTGGCTATTCAAATATACCAGCAGC...............................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CCAGTAC---CAA---CAG---CAGCATCAG--...............	22	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TATTCAAATATACCAGCAGCA..............................................................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGC..................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CTATTCAAATATACCAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ACCAGTAC---CAA---CAG---CAGCATC...................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CTATTCAAATATACCAGC..................................................................................................................................................................................................................................................................................................................................	18	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CAGCAGCAA---------------------------CACCAGTAC---CAA---................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CTATTCAAATATACCAGCAGCA..............................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CCAGTAC---CAA---CAG---CAGCATCAG--C------AATT....	27	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CCAGTAC---CAA---CAG---CAGCATCAG--C------AA......	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACAGCA---------------GC-----AGCAACAGCAACAAG---AG...........................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CCAGTAC---CAA---CAG---CAGCATCAG--C------AACA....	27	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTATTCAAATATACCAGCAGCAACTT..........................................................................................................................................................................................................................................................................................................................	27	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................ATACCAGCAGCAACAACA........................................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TTCAAATATACCAGCAGCAAA............................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CAAG---AGCAG-------------------CAGCAACA---ACAG......................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................ATTCAAATATACCAGCAGCA..............................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................ATTCAAATATACCAGCAGCAAC............................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ACAGCAACAAG---AGCAG-------------------CAGCAACA---..........................................................................................	24	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CAACAGCAACAAG---AGCAG-------------------CAG..................................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CAA---CAG---CAGCATCAG--C------AACAGCA.	23	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CAACAACACCAGCAGCAACA........................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CAACACCAGCAGCAACAGCA---------------......................................................................................................................................................	20	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CAGCAACAGCAACAACACC..................................................................................................................................................................................	19	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................G------------------------CAGCAACAGCAACAACAG---------CAGCA.........................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AGCAACAACAGCAGCAGCAACAGCA..........................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GCAACAACAGCAGCAGCAAC..............................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................CAACAG---------CAGCAGCAA---------CAGCAA......................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................AGCAGCAACAACAG---CAG------------------------CAGCAA...................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AGCAACAACAGCAGCAGCAA...............................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AG------------------------CAGCAACAGCAACAACAG---------CAGCAGC.......................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................CAACAACAG---------CAGCAGCAA---------CA..........................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CAACAGCAACAACAGCAGCAGC.................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................AGCAGCAACAACAG---CAG------------------------CA.......................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................ACCAGCAGCAACAGCA---------------GC-----AGCA...........................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AGCAG-------------------CAGCAACA---ACAGCAGCAGC...............................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CAAC---AGCAGCAGCAACAGCAA..............................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................AGCAACAGCAACAACAGCAGCAGCA................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCAGCAACAGCA---------------GC-----AGCAACAGCAAC...................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AG------------------------CAGCAACAGCAACAAC.........................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................G------------------------CAGCAACAGCAACAACA........................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................CAACAACAG---------CAGCAGCAA---------CAG.........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AACAACAG---CAG------------------------CAGCAACAGCA..............................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGCAGCAA---------CAGCAACAAC---AGCAGCAGC......................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CAGCAACAAC---AGCAGCAGCAA....................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AA---------CAGCAACAAC---AGCAGCAGCA.....................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................ACAACAG---------CAGCAGCAA---------CAGCA.......................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GCAGCAACAACAG---CAG------------------------CAGC.....................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ACAGCAACAACAGCAGCAGCAAC..............................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CAACAAG---AGCAG-------------------CAGCAACA---..........................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ACAGCAACAACAGCAGCAGC.................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CAACAGCAGCAGCAACAGCAA.........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................G---------CAGCAGCAA---------CAGCAACAAC---AGCA...........................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CAACAAC---AGCAGCAGCAACAG.................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GCAGCAA---------CAGCAACAAC---A..............................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................CAGCAGCAACAACAG---CAG------------------------CA.......................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................ACAG---------CAGCAGCAA---------CAGCAACAAC---AG.............................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GCAGCAA---------CAGCAACAAC---AGCAGCA........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AACAAG---AGCAG-------------------CAGCAACA---AC........................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................ACAACAG---CAG------------------------CAGCAACAGCAACA...........................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AG-------------------CAGCAACA---ACAGCAGCAGCA..............................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................AC---AGCAGCAGCAACAGCAACAACAG........................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ACAACAGCAGCAGCAACAGCA..........................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................AAC---AGCAGCAGCAACAGCAACAA...........................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGCAACAACACCAGCAGC............................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AACAAG---AGCAG-------------------CAGCAACA---A.........................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AGCAGCAACAGCA---------------GC-----AGCAACAG.......................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCAGCAACAGCA---------------GC-----AGCAACA........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AACAG---------CAGCAGCAA---------CAGCAACAA...................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CAAC---AGCAGCAGCAACAGC................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AGCAG-------------------CAGCAACA---ACAGCAGCAGCAA---------------------------CA................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AACAG---CAG------------------------CAGCAACAGCAA.............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CAGCAACAGCAACAACAGCAG.....................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CAGCAACAACAGCAGCAGCAA...............................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AACAGCA---------------GC-----AGCAACAGCAA....................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AACA---ACAGCAGCAGCAA---------------------------CA................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................G---CAG------------------------CAGCAACAGCAACAACAG---------CA............................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CAACAGCA---------------GC-----AGCAACAGCA.....................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCAACAGCA---------------GC-----AGCAACAGC......................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................AGCAACAAC---AGCAGCAGCAACAGCA...............................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AACAG---CAG------------------------CAGCAACAGCAACAA..........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................CAACAG---------CAGCAGCAA---------CAGC........................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ACAG---CAG------------------------CAGCAACAGCAACAACAG---------..............................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACAGCA---------------GC-----AGCAACAGCAACA..................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................AGCAACAACAG---CAG------------------------CAGCAACAGCA..............................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................AGCAACAACAG---CAG------------------------CAGC.....................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................ACAACAG---CAG------------------------CAGCAACAGC...............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CAGCAACAACAG---------CAGCAGCAA---------............................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GCAGCAACAGCAACAACAGCAGCA...................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AACAGCAACAACAG---------CAGCAGCA......................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AGCAACAACAG---------CAGCAGCAA---------............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CAACAAG---AGCAG-------------------CAGCAAC..............................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................ACAAC---AGCAGCAGCAACAGCA...............................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GCAACAAC---AGCAGCAGCAAC...................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AG-------------------CAGCAACA---ACAGCAGCA.................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................A---------CAGCAACAAC---AGCAGCAGCAAC...................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CAG------------------------CAGCAACAGCAACAACAG---------CAGC..........................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................CAA---------CAGCAACAAC---AGCAGCAGC......................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................CAACAG---CAG------------------------CAGCAACAGC...............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CAACAACAGCAGCAGCAACAG............................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CAGCAA---------CAGCAACAAC---AGCAG..........................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CAGCAGCAA---------CAGCAACAAC---AGCAGC.........................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droMoj3

CGGTGCGACAACCTATCAACAATTAATGCAGCCCTACGTGCCAGTGTCATGTGAGTATCCCCCACAACAACAA---CAA---------------------------------------------------------CAT---------CAACAACAAC---------------------AACAACAAC-------------------------------------AACCAATATGTAGCGCCATAACAACAACAAC---TACAACAACAGCAGCAACAACAGCCAGTAATA---ATAATAATAAT---------------------------------------------------------------GCTGTAACTGTAACTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................CAACAA---CAA---------------------------------------------------------CAT---------CAACAACAAC---------------------AACAACA......................................................................................................................................................................................................	29	7	0.14	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................AACAACAAC---TACAACAACAGCA................................................................................................................	22	20	0.10	2	0	0	0	0	2	0
...............................................................ACAACAACAA---CAA---------------------------------------------------------CAT---------CAACAAC.....................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................AACAACAAC---TACAACAACAGC.................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
........................................................................A---CAA---------------------------------------------------------CAT---------CAACAACAAC---------------------AACA.........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droGri2

C----------------AACAGCAACAGCAACACTACGAGTAGAAGCCAC------AATACCAGCAATAACAACAGCACAACTA---------------------ACAACAACAA---------------CAA---------------CAACAGCAGC---AGCAGCAATAACAACAACAACAGCAACAGCAACAGTAACAATAATAATAATCACAGCA---------------GCAGCAACAC-----------------AAAC-------------ACAAACAGCAACA---ACAGCACCAACAA---------------------------CAACCATAA---TGA---TAA---TGCCATCAATAG------CAATAACA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................ATAACAACAGCACAACTA---------------------AC.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
......................................................................................................................................................ACAGCAGC---AGCAGCAATAACAACA...............................................................................................................................................................................................................	24	6	0.17	1	1	0
..................................................................................................................A---------------CAA---------------CAACAGCAGC---AGCAGCAATA.....................................................................................................................................................................................................................	24	7	0.14	1	1	0

der_1117

scaffold_4845:12603630-12603780 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

0.0	0.3