der_1081

Name	Class	Family	Strand
GA-rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGGCGGCGTCTCCAGTGCGTAATAGTGCGGCAACTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGATGAGGAGGTGGAGGAGGAGGAGGAAGAAGACGAAGAGGAAGACGAGGATGAGGAGGAGGGGGAAGAACAAGCGGAGGAATCTGTAGAAGATACGGGTAGGGAACTGCTTAACCTCCCAGAAGAAGCTCTG *************************************************************************..........(((...((.((....)).))...)))...............................***********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V107 male body	V040 embryo	M055 female body	V060 head	V108 head
...........................................................................AAGAAGAAGGCGTGGCCAGTGAAAGC......................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0
.............................................................TGAGGCAAATACAGAAGAAGAAGGC.....................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0
...............................AACTACGACGCGAGCCGAGT........................................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0
....................................................AAGTGTGAATGAGGCAAATAC..................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................AAGAGGAAGACGGGGATGAGG.............................................................................	21	1	2	0.50	1	1	0	0	0	0
........................................................................................................GACAACGAGGAAGAGCATGAAGA............................................................................................................................	23	3	7	0.29	2	2	0	0	0	0
..............................................................................................................GAGGAAGAGGATGAGGAGGG.........................................................................................................................	20	1	6	0.17	1	0	1	0	0	0
.....................................................................ATACGGAAGAAGAGGGCG....................................................................................................................................................................	18	2	6	0.17	1	0	0	1	0	0
...................................................................CAAGGCAGAAGAAGAAGGCGT...................................................................................................................................................................	21	3	6	0.17	1	1	0	0	0	0
...................................................................AAAAACAGAAGAAGAAGG......................................................................................................................................................................	18	1	7	0.14	1	0	1	0	0	0
...........................................................................................................................AGGAGGTGGAGGAGGAGGA.............................................................................................................	19	0	8	0.13	1	0	0	1	0	0
..........................................................................................................................................................................................................TGTGGTTGATACGGGTAGG..............................	19	3	13	0.08	1	0	1	0	0	0
............................................................................................................................GGAGGTGGAGGAGGAGGA.............................................................................................................	18	0	15	0.07	1	1	0	0	0	0
...............................................................................................................................GGTGGAGGAGGAGGAGGA..........................................................................................................	18	0	18	0.06	1	0	0	1	0	0
............................................................................................................................................................AGGAAGACGAGGATGACGG............................................................................	19	2	19	0.05	1	0	0	0	1	0
.....................................................................................................................................AGAGGAGGAGGAAGAAGA....................................................................................................	18	1	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droEre2	scaffold_4845:9081442-9081692 +	der_1081	AG-GCG--------------GCGTCTCCAGTGCGTAATAGTGCGGCAACTACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGATGAGGAGGT------GGAGGAG------------GAGGA--GGAAGAAGA---CGAAGA-GGAAGACGA----------GGA---TGAGGAGGAGGGGGAAGAACAAGCGGAGGAATCTGTA-------------------------------------------------------------------------------GAAGATACGGGTAGGGAA------------------CTGCTTAACCTCCC--AGAAGAAGC-TCTG
droYak3	2R:14307860-14308110 -	dya_571	AG-GCG--------------GCGTCTCCAGTGCGTAGTAGTGCGGCATCCACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGATGAAGAGGAGGAGGATGT------AGAGGAG------------GAAGA--TGAAGAAGAAGACGAGGA-GGAGGAAGA----------TGA---TGAGGAGGAGGGTGAACAACAAGTA---GAACAAGTA-------------------------------------------------------------------------------GAAGAAACGGGTAGGGAA------------------TTGCTTAACCTCCC--GGAAGAGTC-ACTG
droSec2	scaffold_1:12392166-12392398 +		AG-GCG--------------GCGTCCCCAGTGCGTAATAGTGCGACATCCACGACGCGAGCAGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AAGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGA---------------------AGAAGAAG---------------------AAGAAGAGGT----------GGA---GGAGGAGGAGGAGGAAGAACAAGTAGAGGAATCTGTA-------------------------------------------------------------------------------GAAGGGACTCCTAGGGAA------------------TTGCTTAACCTACC--AGAGGAAGC-TCTG
droSim2	2r:15534855-15535084 +	dsi_25601	AG-GCG--------------GCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCAGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGA---------------------AGAAGAAG---------------------AAGATGA-------------GGT---GGAGGAGGAGGAGGAAGAACAAGTAGAGGAATCTGTA-------------------------------------------------------------------------------GAAGGGACTCCTAGGGAA------------------TTGCTTAACCTACC--AGAGGAAGC-TCTG
dm3	chr2R:14885879-14886117 +		AG-GCG--------------GCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCTGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGATGAGGAAGTTGA---------------------AGATGAAGA--TGAAGA-------------AGAAGA-------------GGT------AGACGAGGAGGAGGAACAAGTAGAAGAATCTGTAGAAGAA-------------------------------------------------------------------------GAAGAGGCTCCCAGGGAA------------------TTGCTGAACCTACC--AGAGGAAGC-TCTG
droEug1	scf7180000409663:443316-443530 -		AG-GCA--------------GCGTCTCCAGTGCGTAATAGTGCCGCAGCTACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAAGA---------------------AGAAGAGG----------------------------------------------------ATGAGGGTCCAGAACAAGCAGAAGAATTTGCA-------------------------------------------------------------------------------GAAGTGGCTTCTAGGGAC------------------CGGCTTAACCCACC--GGAGGAATC-CCTG
droBia1	scf7180000302292:1478900-1479102 -		AG-GCG--------------GCGTCTCCAGTGCGTAACAGTGCAGCCTCTACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGAGGAGGAGGA---------------------G-------------------------------------------------------------GCGGGGGGAGAGCAACCGGAAGAATCTGTT-------------------------------------------------------------------------------CAAGTGGTTCTACAGGAT------------------GTGCTTAGTCT-----AGGAGAGCC-TCAG
droTak1	scf7180000415991:355335-355564 +		AG-GCG--------------GCGTCTCCAGTGCGTAACAGTGCGGCCTCAACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAGAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGA---------------------GGATGAGGA---------------------GGAAGAATC----------GGT------AGAGGAGGGGGCAGAACAAGCTGAAGAATCTGTA-------------------------------------------------------------------------------GAAGGGGCTCCTAGGGAA------------------TTGCTTAATCCCCC--AGAAGAATC-TCTG
droEle1	scf7180000491228:23867-24075 -		AG-GCG--------------GCGTCTCCAGTGCGTAATAGTGCGGCATCTGCGACGCGGGCTGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGACTGCAGTGACGGCGAAGAGGAAGAAGAAGAGGA---------------------A----------------------------------------------------------GAGGAGGGG------------GAAGAATCTGTAGAGGC-------------------------------GGA---------------------------AATC---------GAAGAGGCTCCCAGGGAA------------------TCTCTTAACCTTCC--AGAGGAATC-TCTG
droRho1	scf7180000779618:14868-15073 +		AG-GCA--------------GCGTCTCCAGTGCGTAATAGTGCGGCGACTACGACGCGAGCTGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGACAGCAGTGACAGCGAAGAAGAGGGGGAGGAGGA---------------------GGAGGAGG-------------------------------------------------------------ATGAGGAGGGGGAGGAATCCGTA-------------------------------------------------------------------------------CAGGAAGCTACCGGAAAT------------------GTGCTTAACCTTCC--AGAAGAAGC-TCTT
droFic1	scf7180000454044:681142-681425 +		AG-GCG--------------GCGTCTCCAGTGCGTAACAGTGCCGCATCGACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAATGACAGCAGTGACAGCGAAGAAGAAGTTGAAGAGGA------AGGGGAG------------GAGGA--GGAGGAGGA---GGAGGA-GGAGGA-------------GGA---GGAGGAGGAGGAGGA---------AGAAGAATCAGCAGGGGAAGGGGTAGAACAGGTGG-AGGAACCTTCAGTGGG---------TGT---------------GGTA---------GAAGAGGCTTCAAGAGAA------------------GTTCTTAATCTACC--AGAAAAGGC-TTCG
droKik1	scf7180000302682:642209-642429 +		AG-GCG--------------GCGTCTCCAGTGCGTAATTCGGCGGCAGCGGCAACGCGAGCTGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGACAGCAGTGACAGCGAGGAAGAGGAGGAGGATGA------TGAGACT------------GAGGA----------------------------------------GGAAG---------------ATGATGAAG------------TA-------------------------------------------------------------------------------GAAGAGTCTCCTGAGGTCCTGCCAGAGTTGGCCCAAGGTCTTAGCCCCCC--AGAAGTGCC-TGCA
droAna3	scaffold_13266:17449138-17449346 -	dan_2079	AG-GCG--------------GCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAA---GTG----TGAATG--------------------------AGACAAATACA-------------------------GAAGAAGA------------------------------AGCCCTGGCCAGCGAAGGCAGTGATAGCGAAGAGGAGGAGGAAGAAAC----------------------------------------------------------------------------------------------------AGAAGAGTCTGAAGAAAGTGAAGTAGAACAGGAGGC----A---------------------------------------------------GGTGTGGCGCCGCAGGAC------------------ACGCTTAATGTTCC--AGA---AGC-TAGC
droBip1	scf7180000396735:710723-710935 -		AG-GCG--------------GCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAA---GTG----TGAATG--------------------------AGACAAATACA-------------------------GAAGAAGA------------------------------AGCCATAGCCAGCGAAAGCAGTGACAGCGAAGAGGAGGAGGAAGAAAC----------------------------------------------------------------------------------------------------AGAAGAGTCTGAAGAAAGTGAAGTAGAACAGGAGGC----A---------------------------------------------------GAAGTAAGGCCACAGGAC------------------CAGCTTGATGTGCC--AGAAGCTAGCCAGG
dp5	3:5960643-5960838 +		AG-GCG--------------TCATCTCCAGTGCGTA---CAGCGACAGCAGCGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAATGA---------------------GGAACAGGGGG------------------CAGAAGA-------------GGAAGATCAGCAGCAGCAG---------------------------------------------GC----AGAGGTAGAGGA---------------------------AGTCGAAAAC--------GACTCCGAAGA--------------------------------------------------
droPer2	scaffold_2:6161599-6161794 +		AG-GCG--------------TCATCTCCAGTGCGTA---CAGCGACAGCAGCGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAATGA---------------------GGAACAGGGGG------------------CAGAAGA-------------GGAAGATCAGCAGCAGCAG---------------------------------------------GC----AGAAGTAGAGGA---------------------------AGTCGAAAAC--------GACTCCGAAGA--------------------------------------------------
droWil2	scf2_1100000004510:2489661-2489862 +	dwi_441	AG-GCA--------------GCATCTCCAGTGCGTA---CAGCCACGACAAGCGCGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAAT----------------------------GAAGAAGA------------------------------AGATCTGTCCAGTGA---CAGTGGCAGCGAGGAAGAGGACGACGAAGA---------------------GGAAGATGATG------------------CAG-------CAGTTGAACAGAAAGAAGTAGTGCCACAG---------------------------------------------GT----ACAAGAGGAGGA---------------------------AAAGGAAAATGAGGATGAAGCTTC-------------------------------------------------------
droVir3	scaffold_12875:19589786-19590036 -	dvi_7992	ATCAGTCGGCGACAGCGGCGGCATCTCCAGTGCGTACAACGACAGCGTCGACAGCGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AAACAAAT----------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGACAACAGTGGCAGCAGCGAGACGGAGAGTGAGACGGGAAGTGAGAGC---------------GAGG------------------CGGAGGA-------------AGAAGAGCAGCAGCAGCAG----CAGCAGCAGGCGCAGTTGGC--------------------GC-AGGCACCCGCTGAGGA---------TCA---------------AGTGGATAACGA--TTCCAGCTCCG----------------------------------------------------AG
droMoj3	scaffold_6496:6639868-6640151 -		AGAGCA------G-------AGCATGCCAGTGATAAATATTGTGCCGCCAGAG-AATGAGCTGATGGAGAAGGCGTCAGAGAATGAATGCAATATGGATGTCATAAGCGATAGGCATATAGAGCAGGAGATTGAGGAGAAGCAGGAGGAGGAAGA------------------------------GGGCGA------------------TGGCGAGGAAGTTAAAGTGGAAGT------AGCAGAGGAGGAAGAGGAAGAGATTA------------------CAGATGATGA----------GGA---GGAGGAGGAGGAGGAAGATGAAGAAAATGAGATTGAG-------------------------------------------------------------------------------G--------CAGAGGTGA------------------AGGCAGAGCCAATTGCAGA--AGCA-GCTG
droGri2	scaffold_15245:17961626-17961895 +		AA-GCG-----ACAACAGCATCATCTTCAGTGCGTACAGCAACAACGGCGACAGCACGAGCCGAGGTAA---GTG----TGAATG--------------------------AAACAAATGAA-------------------------GAAGAAGAAGTGGCAGCAGCAGCAGAAAATGATGAAGTAGGTGTGGCCAGTGACGACAGTGGCAGCAGCGACATTGAGAGCGAAAC---------------------AGAACAAG---------------------AGCGTGAAC-AAGTTCAAGAGCAAGAGTTGCAACCACAA---------------------------------------------GC----AGTAGCGGTGATAAATGAAGATCAAGTGGACAACGACGACGTCG---------ATG--ACGCC------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

AG-GCG--------------GCGTCTCCAGTGCGTAATAGTGCGGCAACTACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGATGAGGAGGT------GGAGGAG------------GAGGA--GGAAGAAGA---CGAAGA-GGAAGACGA----------GGA---TGAGGAGGAGGGGGAAGAACAAGCGGAGGAATCTGTA-------------------------------------------------------------------------------GAAGATACGGGTAGGGAA------------------CTGCTTAACCTCCC--AGAAGAAGC-TCTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................AAGAAGA------------------------------AGGCGTGGCCAGTGAAAGC...............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
...................................................................................TG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGC..............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..............................................AACTACGACGCGAGCCGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...................................................................AA---GTG----TGAATG--------------------------AGGCAAATAC..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................GAGGAAGAGGATGAGGAGGG------............................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................AGGAGGT------GGAGGAG------------GAGGA--..................................................................................................................................................................................................................................	19	8	0.13	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................GGAGGT------GGAGGAG------------GAGGA--..................................................................................................................................................................................................................................	18	15	0.07	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................GGT------GGAGGAG------------GAGGA--GGA...............................................................................................................................................................................................................................	18	18	0.06	1	1	0	0	0	0	0	0

droYak3

AG-GCG--------------GCGTCTCCAGTGCGTAGTAGTGCGGCATCCACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGATGAAGAGGAGGAGGATGT------AGAGGAG------------GAAGA--TGAAGAAGAAGACGAGGA-GGAGGAAGA----------TGA---TGAGGAGGAGGGTGAACAACAAGTA---GAACAAGTA-------------------------------------------------------------------------------GAAGAAACGGGTAGGGAA------------------TTGCTTAACCTCCC--GGAAGAGTC-ACTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................GACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................GTGCGTAGTAGTGCGGCATCCACGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................GACGCGAGCCGAGGTAA---GT.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
............................AGTGCGTAGTAGTGCGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0

droSec2

AG-GCG--------------GCGTCCCCAGTGCGTAATAGTGCGACATCCACGACGCGAGCAGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AAGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGA---------------------AGAAGAAG---------------------AAGAAGAGGT----------GGA---GGAGGAGGAGGAGGAAGAACAAGTAGAGGAATCTGTA-------------------------------------------------------------------------------GAAGGGACTCCTAGGGAA------------------TTGCTTAACCTACC--AGAGGAAGC-TCTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................................GAGGT----------GGA---GGAGGAGGAGGAGGA.......................................................................................................................................................................	23	2	3.00	6	0	5	0	1
................................................................................................................................................................................................................................................................................................GAGGT----------GGA---GGAGGAGGAGGAGGAA......................................................................................................................................................................	24	1	2.00	2	0	2	0	0
...................................................................................................................................................................................................................................GGAGGA---------------------AGAAGAAG---------------------AAGAAGAGGT----------GG..........................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..........................................CGACATCCACGACGCGAGCAGAGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................AAGAGGT----------GGA---GGAGGAGGAGGAGGAAG.....................................................................................................................................................................	27	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................................GAGGT----------GGA---GGAGGAGGAGGAGGAAG.....................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................AGAGGAGGAGGAGGA---------------------AGA..........................................................................................................................................................................................................................................	18	6	0.50	3	1	2	0	0
....................................................................................................................................................................................................................................GAGGA---------------------AGAAGAAG---------------------AAGAAGA.........................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................AAGAGGT----------GGA---GGAGGAGGA.............................................................................................................................................................................	19	2	0.50	1	0	1	0	0
................................................................................................................................................................................................................................................................................................GAGGT----------GGA---GGAGGAGGAGGA..........................................................................................................................................................................	20	6	0.33	2	0	2	0	0
......................................................................................................................................................................................................................AAGAAGAGGAGGAGGAGGA---------------------AGT..........................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	1
...........................................................................................................................................................................................................................GAGGAGGAGGAGGA---------------------AGAAGA.......................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................AGGT----------GGA---GGAGGAGGAGGAG.........................................................................................................................................................................	20	5	0.20	1	0	0	0	1
.........................................................................................................................................................................................................................AAGAGGAGGAGGAGGA---------------------AGA..........................................................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................AGGT----------GGA---GGAGGAGGAGG...........................................................................................................................................................................	18	12	0.17	2	0	0	0	2
.................................................................................................................................................................................................................................................................................................AGGT----------GGA---GGAGGAGGAGGA..........................................................................................................................................................................	19	8	0.13	1	0	0	0	1
.....................................................................................................................................................................................................................GAAGAAGAGGAGGAGGAGG...................................................................................................................................................................................................................................................................	19	9	0.11	1	0	1	0	0
................................................................................................................................................................................................................................................................................................................GA---GGAGGAGGAGGAGGAAG.....................................................................................................................................................................	19	14	0.07	1	1	0	0	0

droSim2

AG-GCG--------------GCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCAGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGA---------------------AGAAGAAG---------------------AAGATGA-------------GGT---GGAGGAGGAGGAGGAAGAACAAGTAGAGGAATCTGTA-------------------------------------------------------------------------------GAAGGGACTCCTAGGGAA------------------TTGCTTAACCTACC--AGAGGAAGC-TCTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................GCGTGGCCAGTGAAAGCAGTGACAG.......................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GAGGAGGAAGAACAAGTAGAGGAAT......................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................CAAGTAGAGGAATCTGTA-------------------------------------------------------------------------------GAAGGGA...........................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GA-------------GGT---GGAGGAGGAGGAGGAAG.....................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................A-------------GGT---GGAGGAGGAGGAGGAA......................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................GT---GGAGGAGGAGGAGGAAG.....................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................GA-------------GGT---GGAGGAGGAGGAGGAA......................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................AGAGGAGGAGGAGGA---------------------A............................................................................................................................................................................................................................................	16	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

AG-GCG--------------GCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCTGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGATGAGGAAGTTGA---------------------AGATGAAGA--TGAAGA-------------AGAAGA-------------GGT------AGACGAGGAGGAGGAACAAGTAGAAGAATCTGTAGAAGAA-------------------------------------------------------------------------GAAGAGGCTCCCAGGGAA------------------TTGCTGAACCTACC--AGAGGAAGC-TCTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................CCAGTGCGTAATAGTGCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTGCGTAATAGTGCGGCATCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................GGT------AGACGAGGAGGAGGAACAAGTAGAA..........................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................AGAATCTGTAGAAGAA-------------------------------------------------------------------------GAAGA.............................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGGAA------------------TTGCTGAAC.....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GGCATCCACGACGCGAGCTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------------------------GAAGAGGCTCCCAGGGAA------------------T.............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................A-------------GGT------AGACGAGGAGGAGGAAC..................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................GTGCGTAATAGTGCGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CGTGGCCAGTGAAAGCAGTGA..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AGTGCGTAATAGTGCGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGAAGAATCTGTAGAAGA............................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TAGAAGAATCTGTAGAAGA............................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TGA---------------------AGATGAAGA--TGAAGA-------------A..............................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

AG-GCA--------------GCGTCTCCAGTGCGTAATAGTGCCGCAGCTACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAAGA---------------------AGAAGAGG----------------------------------------------------ATGAGGGTCCAGAACAAGCAGAAGAATTTGCA-------------------------------------------------------------------------------GAAGTGGCTTCTAGGGAC------------------CGGCTTAACCCACC--GGAGGAATC-CCTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AG-GCG--------------GCGTCTCCAGTGCGTAACAGTGCAGCCTCTACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGAGGAGGAGGA---------------------G-------------------------------------------------------------GCGGGGGGAGAGCAACCGGAAGAATCTGTT-------------------------------------------------------------------------------CAAGTGGTTCTACAGGAT------------------GTGCTTAGTCT-----AGGAGAGCC-TCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AG-GCG--------------GCGTCTCCAGTGCGTAACAGTGCGGCCTCAACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGAGAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGA---------------------GGATGAGGA---------------------GGAAGAATC----------GGT------AGAGGAGGGGGCAGAACAAGCTGAAGAATCTGTA-------------------------------------------------------------------------------GAAGGGGCTCCTAGGGAA------------------TTGCTTAATCCCCC--AGAAGAATC-TCTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AG-GCG--------------GCGTCTCCAGTGCGTAATAGTGCGGCATCTGCGACGCGGGCTGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGACTGCAGTGACGGCGAAGAGGAAGAAGAAGAGGA---------------------A----------------------------------------------------------GAGGAGGGG------------GAAGAATCTGTAGAGGC-------------------------------GGA---------------------------AATC---------GAAGAGGCTCCCAGGGAA------------------TCTCTTAACCTTCC--AGAGGAATC-TCTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AG-GCA--------------GCGTCTCCAGTGCGTAATAGTGCGGCGACTACGACGCGAGCTGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGACAGCAGTGACAGCGAAGAAGAGGGGGAGGAGGA---------------------GGAGGAGG-------------------------------------------------------------ATGAGGAGGGGGAGGAATCCGTA-------------------------------------------------------------------------------CAGGAAGCTACCGGAAAT------------------GTGCTTAACCTTCC--AGAAGAAGC-TCTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AG-GCG--------------GCGTCTCCAGTGCGTAACAGTGCCGCATCGACGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAATGACAGCAGTGACAGCGAAGAAGAAGTTGAAGAGGA------AGGGGAG------------GAGGA--GGAGGAGGA---GGAGGA-GGAGGA-------------GGA---GGAGGAGGAGGAGGA---------AGAAGAATCAGCAGGGGAAGGGGTAGAACAGGTGG-AGGAACCTTCAGTGGG---------TGT---------------GGTA---------GAAGAGGCTTCAAGAGAA------------------GTTCTTAATCTACC--AGAAAAGGC-TTCG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AG-GCG--------------GCGTCTCCAGTGCGTAATTCGGCGGCAGCGGCAACGCGAGCTGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGACAGCAGTGACAGCGAGGAAGAGGAGGAGGATGA------TGAGACT------------GAGGA----------------------------------------GGAAG---------------ATGATGAAG------------TA-------------------------------------------------------------------------------GAAGAGTCTCCTGAGGTCCTGCCAGAGTTGGCCCAAGGTCTTAGCCCCCC--AGAAGTGCC-TGCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AG-GCG--------------GCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAA---GTG----TGAATG--------------------------AGACAAATACA-------------------------GAAGAAGA------------------------------AGCCCTGGCCAGCGAAGGCAGTGATAGCGAAGAGGAGGAGGAAGAAAC----------------------------------------------------------------------------------------------------AGAAGAGTCTGAAGAAAGTGAAGTAGAACAGGAGGC----A---------------------------------------------------GGTGTGGCGCCGCAGGAC------------------ACGCTTAATGTTCC--AGA---AGC-TAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................GACGCGGGCCGAGGTAA---GTG----TGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droBip1

AG-GCG--------------GCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAA---GTG----TGAATG--------------------------AGACAAATACA-------------------------GAAGAAGA------------------------------AGCCATAGCCAGCGAAAGCAGTGACAGCGAAGAGGAGGAGGAAGAAAC----------------------------------------------------------------------------------------------------AGAAGAGTCTGAAGAAAGTGAAGTAGAACAGGAGGC----A---------------------------------------------------GAAGTAAGGCCACAGGAC------------------CAGCTTGATGTGCC--AGAAGCTAGCCAGG	Size	Hit Count	Total Norm	Total
No Reads

dp5

AG-GCG--------------TCATCTCCAGTGCGTA---CAGCGACAGCAGCGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAATGA---------------------GGAACAGGGGG------------------CAGAAGA-------------GGAAGATCAGCAGCAGCAG---------------------------------------------GC----AGAGGTAGAGGA---------------------------AGTCGAAAAC--------GACTCCGAAGA--------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................CAGCGACAGCAGCGACGCGAGCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................CAGCGACAGCAGCGACGCGAGCCGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................GAAGAAGA------------------------------AGGCGTGGCCAGTG---GCA..............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GTAGACGAGGAGAATGA---------------------GGAAC........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.................................................................................AATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGC..............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................CAGCAGCGACGCGAGCCGAGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................GTGCGTA---CAGCGACAGCAGCGACGCGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

AG-GCG--------------TCATCTCCAGTGCGTA---CAGCGACAGCAGCGACGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAATACA-------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAATGA---------------------GGAACAGGGGG------------------CAGAAGA-------------GGAAGATCAGCAGCAGCAG---------------------------------------------GC----AGAAGTAGAGGA---------------------------AGTCGAAAAC--------GACTCCGAAGA--------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................AGTG---GCAGTGACAGCGAGGTA................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...GCG--------------TCATCTCCAGTGCGTA---CAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............................................GCAGCGACGCGAGCCGAGGTAA---GTG----TGA.........................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.................................GTA---CAGCGACAGCAGCGACGCGAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0

droWil2

AG-GCA--------------GCATCTCCAGTGCGTA---CAGCCACGACAAGCGCGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AGGCAAAT----------------------------GAAGAAGA------------------------------AGATCTGTCCAGTGA---CAGTGGCAGCGAGGAAGAGGACGACGAAGA---------------------GGAAGATGATG------------------CAG-------CAGTTGAACAGAAAGAAGTAGTGCCACAG---------------------------------------------GT----ACAAGAGGAGGA---------------------------AAAGGAAAATGAGGATGAAGCTTC-------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................AGCGAGGAAGAGGACGACGA.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................AAGTAGTGCCACAG---------------------------------------------GT----AC....................................................................................................................	18	1	1.00	1	0	1	0	0	0

droVir3

ATCAGTCGGCGACAGCGGCGGCATCTCCAGTGCGTACAACGACAGCGTCGACAGCGCGAGCCGAGGTAA---GTG----TGAATG--------------------------AAACAAAT----------------------------GAAGAAGA------------------------------AGGCGTGGCCAGTGACAACAGTGGCAGCAGCGAGACGGAGAGTGAGACGGGAAGTGAGAGC---------------GAGG------------------CGGAGGA-------------AGAAGAGCAGCAGCAGCAG----CAGCAGCAGGCGCAGTTGGC--------------------GC-AGGCACCCGCTGAGGA---------TCA---------------AGTGGATAACGA--TTCCAGCTCCG----------------------------------------------------AG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................ACAGCGTCGACAGCGCGAGCCGAGTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTGCGTACAACGACAGCGTCGACAGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGTCGGCGACAGCGGCGGCATCTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCAGTCGGCGACAGCGGCGGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GACAGCGTCGACAGCGCGAGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTCGGCGACAGCGGCGGCATCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TGGC--------------------GC-AGGCACCCGCTGAGGA---------T................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....TCGGCGACAGCGGCGGCATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................ACGACAGCGTCGACAGCGCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CGACAGCGGCGGCATCTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
ATCAGTCGGCGACAGCGGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTGCGTACAACGACAGCGTCGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................ACGACAGCGTCGACAGCGCGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCGTCGACAGCGCGAGCCGAGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CAGCGTCGACAGCGCGAGCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGA--TTCCAGCTC........................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................GA-------------AGAAGAGCAGCAGCAGC...........................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................A-------------AGAAGAGCAGCAGCAGCA..........................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAG----CAGCAGCAGGCGC........................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................AGCAGCAG----CAGCAGCAGGCGC........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

AGAGCA------G-------AGCATGCCAGTGATAAATATTGTGCCGCCAGAG-AATGAGCTGATGGAGAAGGCGTCAGAGAATGAATGCAATATGGATGTCATAAGCGATAGGCATATAGAGCAGGAGATTGAGGAGAAGCAGGAGGAGGAAGA------------------------------GGGCGA------------------TGGCGAGGAAGTTAAAGTGGAAGT------AGCAGAGGAGGAAGAGGAAGAGATTA------------------CAGATGATGA----------GGA---GGAGGAGGAGGAGGAAGATGAAGAAAATGAGATTGAG-------------------------------------------------------------------------------G--------CAGAGGTGA------------------AGGCAGAGCCAATTGCAGA--AGCA-GCTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................................GT------AGCAGAGGAGGAAGAGGAAGAGAT....................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................AGCAGGAGGAGGAAGA------------------------------GGG...............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGA----------GGA---GGAGGAGGAGGAGGAAC.....................................................................................................................................................................	23	7	0.14	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................TGA----------GGA---GGAGGAGGAGGA..........................................................................................................................................................................	18	20	0.10	2	0	0	0	2	0	0
................................................................................................................................................................................................................................................................................................GATGA----------GGA---GGAGGAGGAGGAG.........................................................................................................................................................................	21	11	0.09	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................TGA----------GGA---GGAGGAGGAGGAGG........................................................................................................................................................................	20	13	0.08	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GA----------GGA---GGAGGAGGAGGAGGAA......................................................................................................................................................................	21	15	0.07	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................A----------GGA---GGAGGAGGAGGAGGAA......................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................GA---GGAGGAGGAGGAGGAA......................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1

droGri2

AA-GCG-----ACAACAGCATCATCTTCAGTGCGTACAGCAACAACGGCGACAGCACGAGCCGAGGTAA---GTG----TGAATG--------------------------AAACAAATGAA-------------------------GAAGAAGAAGTGGCAGCAGCAGCAGAAAATGATGAAGTAGGTGTGGCCAGTGACGACAGTGGCAGCAGCGACATTGAGAGCGAAAC---------------------AGAACAAG---------------------AGCGTGAAC-AAGTTCAAGAGCAAGAGTTGCAACCACAA---------------------------------------------GC----AGTAGCGGTGATAAATGAAGATCAAGTGGACAACGACGACGTCG---------ATG--ACGCC------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................ACAACGGCGACAGCACGAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
...........ACAACAGCATCATCTTCAGTGCGTACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0

der_1081

scaffold_4845:9081492-9081642 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.7	-4.3