der_1073

exon [dere_GLEANR_6652:2]; CDS [Dere\GG21876-cds]; CDS [Dere\GG21876-cds]; exon [dere_GLEANR_6652:1]; intron [Dere\GG21876-in]

##################################################---------------------------------------------------------------################################################## CTTCTCCGTCGCCACCGTTTTCGTGCTCGGTCTGCTGGCTGTGGCCAACGGTTAGTAAAACTATATTTTACTGCTGTTTGATTAGTTAATTAATTATTCATTTTATTCCTCAGCTGTGCCCCTGTCGCCCGAACCAGGAAATGTGGTGATCAACGGCGACTGC ************************************************..........((............((..((((((......))))))..))...........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V108 head	V107 male body	M055 female body	GSM1528801 follicle cells	V060 head
.............................................................................................................................CGCCCGAACCAGGAAATGTGGT................	22	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................CCAGGAAATGTGGTGATC............	18	0	1	1.00	1	1	0	0	0	0
...........................................................................................AATTATTCATTTTATACCCCA...................................................	21	2	2	1.00	2	0	0	1	0	1
.....................CGTGCTCGGTCTGCTGGC............................................................................................................................	18	0	1	1.00	1	0	1	0	0	0
.............................................................................................................................................TGTGGTGATCAACGGCGAC...	19	0	1	1.00	1	1	0	0	0	0
................GTTTTCGTGCTCGGTCTG.................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................................GTGGTGATCAACGGCGACTGT	21	1	1	1.00	1	1	0	0	0	0
......................GTGCTCGGTCTGCTGGCTGTGGCCA....................................................................................................................	25	0	2	0.50	1	0	0	0	1	0
............................................................................................ATTATTCATTTTATACCCCA...................................................	20	2	4	0.50	2	1	0	1	0	0
........................................................................................................................................GGTAATGTGGAGATCATCGG.......	20	3	12	0.08	1	0	0	1	0	0
............................................................................................................................................AAGTGGTGAACAACGGCAAC...	20	3	15	0.07	1	0	0	1	0	0
............................................................................................ATTATTCATTTTACACCCCA...................................................	20	3	20	0.05	1	0	0	1	0	0

GAAGAGGCAGCGGTGGCAAAAGCACGAGCCAGACGACCGACACCGGTTGCCAATCATTTTGATATAAAATGACGACAAACTAATCAATTAATTAATAAGTAAAATAAGGAGTCGACACGGGGACAGCGGGCTTGGTCCTTTACACCACTAGTTGCCGCTGACG ************************************************..........((............((..((((((......))))))..))...........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V108 head
....................AGAATGTGCCAGACGACCG............................................................................................................................	19	3	18	0.06	1	1

Species	Coordinate	ID	Alignment
droEre2	scaffold_4845:8480088-8480250 +	der_1073	CTTCTCCGTCGCCACCGTTTTCGTGCTCGGTCTGCTGGCTGTGGCCAACGGTTAGTA-A---A----ACTAT--A--T---TTTACTGCTGT----------TTGATTA--------GTTAATTAATTA---------------------------------------TTC-AT---------T-TTA-TTC-CTCAGCTGTGCCCCTGTCGCCCGAACCAGGAAATGTGGTGATCAACGGCGACTGC
droYak3	2R:14914060-14914222 -		CTTCTCCGTCGTCACCGTTTTCGTGTTCGGTCTGCTGGCTGTGGCCAACGGTTAGTA-T---A----ACTAT--A--T---TTAACTGCTAT----------TCGATTG--------CATAATTAATTA---------------------------------------TTC-AT---------T-TTC-CTC-CTCAGCTGTTCCCCTGTCGCCCGATCCAGGAAATGTGGTGATCAACGGCGACTGC
droSec2	scaffold_1:11749295-11749456 +		CTTCTCAGTCGTCACCGTCTTCGTGTTCGGTCTGCTGGCTCTGGCCAACGGTTAGTA-A---T----ACTAT--A--T---TTTACTGCTAT----------TTGATTA--------CTAAATTCATTA---------------------------------------TTT-AT-----------ATC-TTC-TGCAGCTGTTCCCCTGTCGCCCGATCCAGGAAATGTGGTGATCAACGGCGACTGC
droSim2	2r:14941513-14941667 +		CTTCTCAGTCGTTACCGTCTTCGTGCTCGGTCTGCTGGCTCTGGCCAACGGTTAGTA-A---T----ACTAT--A--T---TTTACTGCTAT----------TTGAT---------------TTAATTA---------------------------------------TTT-AT-----------ATC-TTC-TGCAGCTGTTCCCCTGTCGCCCGATCCAGGAAATGTGGTGATCAACGGCGACTGC
dm3	chr2R:14274186-14274347 +		CTTCTCAGTCGTCACCGTCTTTGTGTTCGGTCTGCTGGCTCTGGCCAACGGTTAGTA-A---T----ACTAT--A--T---TTTATAGCTAT----------TTGATTA--------CTTTATAAATTA---------------------------------------TTT-AT-----------TTC-TTC-CGCAGCTGTTCCCCTGTCGCCCGATCCAGGAAATGTGGTAATCAACGGGGACTGC
droEug1	scf7180000409672:3280264-3280429 +		CTTCTCAGTTGTCACTGTCTTTGTGCTCGGTCTGCTGGCACTGGCCAATGGTGAGTT-T---AAAC---TAT--A--A---GTAACTAATAG----------TTTATAAA-------TATAATTAATTA---------------------------------------TAT-AT---------T-TTA-CTCCAACAGCTGTCCCCCTGTCCCCCGATCCAGGCAATGTCATCATCAACGGTGACTGC
droBia1	scf7180000302292:2303519-2303681 +		CTTCTCAGTCGTCACCGTCCTTGTGCTCGGTCTGCTGGCCCTGGCCAACGGTGAGTT-G---AACC---TAC--A--A---GCTTCCAAGAG----------CTGATAA--------TTTTATTAACTA---------------------------------------ACC-AT-----------CTT-TCC-CTCAGCTGTTCCCCTGTCGCCCGATCCTGGCAATGTGGTCATCAACGGCGACTGC
droTak1	scf7180000416016:455335-455497 -		CTTCTCAGTCGTCACCGTCTTTGTGCTCGGTCTGCTGGCCCTGGCCAACGGTGAGTT-G---AATC---TAT--A--A---ACTTCCAATAC----------CCGAACA--------ATTAATAAATGA---------------------------------------ACT-AT-----------CTA-CCC-TTCAGCTGTTCCCCTGTCGCCCGATCCAGGAAATGTGGTTATCAACGGCGACTGC
droEle1	scf7180000489694:109043-109207 +		CTTCTCAGTCGTCACCGTCTTCGTGCTGGGTCTGCTGGCTCTGGCCAACGGTTAGTA-A---AGAC---TAT--A--A---GCTA------TTT--TAAA--------A--------CTTATTTATTTTACTAA-----------------------------TTT--GTT-TT-----------TTA-CCC-TTCAGCCGTTCCCCTGTCGCCCGATCCCGGAAATGTGATCATCAACGGCGACTGC
droRho1	scf7180000777700:9347-9507 -		CTTCTCAGTCGTCACCGTCTTTGTGCTCGGTTTGCTGGCTCTGGCCAATGGTTAGTA-A---AA----ATGT--A--A---ACTAT---TTC-----TTAACTTG------------TTTAAGTAATTT---------------------------------------ATT-AT---------T-TTA-TTC-CTCAGCTGTTCCGCTGTCCCCCGATCCAGGAAATGTGATCATCAACGGCGACTGC
droFic1	scf7180000453851:11317-11483 -		CTTCTCAGTCGTCACCGTCTTTGTTCTCGGTCTGCTGGCTCTCGCCAACGGTGAGTG-A---AGTC---TAT--T--C---GTTA------A----------TAGATCG--------CTAAATTAATTCATTAA-----------------------------TTT--GTT-GT---------TTATT-CCC-AACAGCCGTCCCCTTGTCGCCCGATCCAGGAAATGTTGTTATCAACGGCGACTGC
droKik1	scf7180000302471:67119-67286 -		CTTCTCCGTTGTCACCGTCTTCGTTTTCGGTCTGCTGGCCCTGGCCAACGGTGAGTT-G---AGGC---TCT--C--ATCTTC---C-----TG--AA----TGAATTA--------TTTTATT--------AATTCCTATTATTT--------------------------CT-----------ATT-ATT-TGTAGCTGTTCCCCTGTCGCCCGATCCCGGAAATGTGGTCATCAATGGCGACTGC
droAna3	scaffold_13266:4267429-4267599 -		CTTCTCAGTTGTCACTGTCTTCGTTCTCGGACTCCTGGCTCTGGCCAACGGTGAGTA-A---AATCTTCTAT--A--T---TCTAT------TT--AAAA-----TACA--------ATTTATT--------AAATA--TATATTT--------------------TTAAT-A------------TTT-TCC-AATAGCTGTTCCTCTGTCCCCTGATCCCGGAAATGTCATCATCAACGGCGACTGC
droBip1	scf7180000395751:81580-81751 -		CTTCTCAGTTGTCACTGTCTTCGTTCTCGGCCTCCTGGCTCTGGCCAATGGTGAGTT-T---AAACAACTAT--A--T---TTTTT------TA--AATA-----CGTA--------TTTAATT--------AAATA--AATATTT--------------------CTAAT-AT-----------TTT-CTA-AATAGCTGTTCCCCTGTCCCCTGATCCCGGCAATGTCATCATCAACGGCGACTGC
dp5	3:11533486-11533640 +		CTTCTCAGTTGTCACCGTCTTTGTGCTCGGTCTGCTCGCCCTGGCCAATGGTGAGTT-A---AGCGC-----CTG--ATAAGC-----------CTTC---A-------AT---------------------ATCTACTATAATTTACGATAT----------------------------------------TCCAGCTGTTCCCCTGTCGCCCGATCCCGGCAATGTGGTCATCAACGGCGACTGC
droPer2	scaffold_4:6934253-6934407 +		CTTCTCAGTTGTCACCGTCTTTGTGCTCGGTCTGCTCGCCCTGGCCAATGGTGAGTT-A---AGCGC-----CTG--ATAAGC-----------CTTC---A-------AT---------------------ATTTACTATAATTTACGATAT----------------------------------------TCCAGCTGTTCCCCTGTCGCCCGATCCCGGCAATGTGGTCATCAACGGCGACTGC
droWil2	scf2_1100000004954:3466069-3466239 +		CTTCTCAGTTGTCACCGTTTTCGTGCTGGGTCTTTTGGCTTTGGCCAATGGTAAGTC-TTAATTC-----AGATCTCT---AATG-----AT----------GCGAACT-TGTCATTTCTAAC-AATGA---------------------------------------TCT-TTTG---------CTT-CTA-TTCAGCTGTCCCTCTGTCACCTGATCCCGGCAATGTGGTCATCAACGGGGACTGC
droVir3	scaffold_12963:5776923-5777075 +		CCTGTCGGTTGC------ATTTCTGCTGGGTCTGCTGGCTTTGGCTAGTGGTGAGTACTTAAAGA-----AG--A--T---CATAATGCAAA----------AATAATA--------TTTAACACTTTC---------------------------------------TTT-TT-----------TGT-CTC-GACAGCCACGCCCTTG------AATCCTGGCAACGTGATCATCAACGGTGATTGC
droMoj3	scaffold_6496:6194556-6194741 +		CTTCTCAGTTGTTACCGTCTTTGTGCTCGGTCTCTTGGCTCTGGCCAATGGTGAGTA-GCA-AATGC-----TCA--AGCAGA-----------ATGG---G-------AT---------------------ATATGTATTAGCTAAATATATTTCT--------C--TCTCTCTCCCTCGTCCTCTCTCAC-TTTAGCTGTTCCATTGTCGCCCGATCCAGGCAATGTGGTCATCAATGGCGATTGC
droGri2	scaffold_15245:11534100-11534277 +		CTTCTCAGTTGTCACCGTATTCGTGCTCGGTCTCTTGGCTCTGGCCAGTGGTAAGTG-G---C------AAT--A--T---CTAACCA-----------------------------GTTAA-----------------TTCGCTCAGCACAATTCTAAAATATGC--TTTCTTTGTTTTGATTTATC-AAC-AACAGCCGTTCCACTGTCGCCCGAT---GGAGGTGTGGTCATCAACGGTGACTGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

CTTCTCCGTCGCCACCGTTTTCGTGCTCGGTCTGCTGGCTGTGGCCAACGGTTAGTA-A---A----ACTAT--A--T---TTTACTGCTGT----------TTGATTA--------GTTAATTAATTA---------------------------------------TTC-AT---------T-TTA-TTC-CTCAGCTGTGCCCCTGTCGCCCGAACCAGGAAATGTGGTGATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................CGCCCGAACCAGGAAATGTGGT................	22	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................CCAGGAAATGTGGTGATC............	18	1	1.00	1	0	0	0	0	0	1	0
.....................CGTGCTCGGTCTGCTGGC.................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................TGTGGTGATCAACGGCGAC...	19	1	1.00	1	0	0	0	0	0	1	0
................GTTTTCGTGCTCGGTCTG......................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................GTGGTGATCAACGGCGACTGT	21	1	1.00	1	0	0	0	0	0	1	0
......................GTGCTCGGTCTGCTGGCTGTGGCCA.........................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1

droYak3

CTTCTCCGTCGTCACCGTTTTCGTGTTCGGTCTGCTGGCTGTGGCCAACGGTTAGTA-T---A----ACTAT--A--T---TTAACTGCTAT----------TCGATTG--------CATAATTAATTA---------------------------------------TTC-AT---------T-TTC-CTC-CTCAGCTGTTCCCCTGTCGCCCGATCCAGGAAATGTGGTGATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................CCAGGAAATGTGGTGATCAACGGC......	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................TTCGGTCTGCTGGCTGTGGCCAACGC.....................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CGCCCGATCCAGGAAATGTGGT................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................................ATCCAGGAAATGTGGTGATCAACGGC......	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................GCCCGATCCAGGAAATGTGGTGAT.............	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................CGCCCGATCCAGGAAATGTGGTGAT.............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................ATCCAGGAAATGTGGTGATC............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................TGTGGTGATCAACGGCGAC...	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................GCCCGATCCAGGAAATGTGGTGATC............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................T---------T-TTC-CTC-CTCAGCTGTTCCCC.........................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................GGTCTGCTGGCTGTGGCCA.........................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0

droSec2

CTTCTCAGTCGTCACCGTCTTCGTGTTCGGTCTGCTGGCTCTGGCCAACGGTTAGTA-A---T----ACTAT--A--T---TTTACTGCTAT----------TTGATTA--------CTAAATTCATTA---------------------------------------TTT-AT-----------ATC-TTC-TGCAGCTGTTCCCCTGTCGCCCGATCCAGGAAATGTGGTGATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................................................................................TCCAGGAAATGTGGTGATCAACGGC......	25	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................CCAGGAAATGTGGTGATCAACGGC......	24	1	1.00	1	0	0	0	1
.........................................................................................................................................................................................................................TCCAGGAAATGTGGTGATCAACGGCG.....	26	1	1.00	1	0	0	0	1
.....................................................................................................................................................................................................GCTGTTCCCCTGTCGCCCG................................	19	1	1.00	1	0	0	1	0
...............CGTCTTCGTGTTCGGTCTGCTG...................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................................CTGTCGCCCGATCCAGGAAATGTG..................	24	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................CGATCCAGGAAATGTGGTGAT.............	21	1	1.00	1	1	0	0	0
...CTCAGTCGTCACCGTCTTCGTGTT.............................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
..............CCGTCTTCGTGTTCGGTCTGCT....................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................CTGTCGCCCGATCCAGGAAATGTGGTGA..............	28	1	1.00	1	0	1	0	0

droSim2

CTTCTCAGTCGTTACCGTCTTCGTGCTCGGTCTGCTGGCTCTGGCCAACGGTTAGTA-A---T----ACTAT--A--T---TTTACTGCTAT----------TTGAT---------------TTAATTA---------------------------------------TTT-AT-----------ATC-TTC-TGCAGCTGTTCCCCTGTCGCCCGATCCAGGAAATGTGGTGATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................TGTGGTGATCAACGGCGAC...	19	1	13.00	13	12	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGGTCTGCTGGCTCTGGCCAACGC.....................................................................................................................................................................................................	24	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TCGGTCTGCTGGCTCTGGCCAACGC.....................................................................................................................................................................................................	25	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CTTCTCAGTCGTTACCGTCTTC..................................................................................................................................................................................................................................	22	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................ATGTGGTGATCAACGGCGAC...	20	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................ATGTGGTGATCAACGGCGACT..	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CGTTACCGTCTTCGTGCTCGGT.........................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CTCGGTCTGCTGGCTCTGGCCAACGC.....................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TCCAGGAAATGTGGTGATCAACGGC......	25	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCTCGGTCTGCTGGCTCTGGCCAACGC.....................................................................................................................................................................................................	27	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................TCGGTCTGCTGGCTCTGGCCAAC.......................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AAATGTGGTGATCAACGGC......	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGGTCTGCTGGCTCTGGCCAA........................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGGTCTGCTGGCTCTGGCCAACGG.....................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTTCGTGCTCGGTCTGCT....................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGCTCGGTCTGCTGGCTCTGGC...........................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................ATGTGGTGATCAACGGCGACTGC	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ATC-TTC-TGCAGCTGTTCCC..........................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AATTA---------------------------------------TTT-AT-----------ATC-TTC-TGCAGCTGT..............................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTGTTCCCCTGTCGCCCG................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTTCGTGCTCGGTCTGCTGG..................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
CTTCTCAGTCGTTACCGTCT....................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTCTCAGTCGTTACCGTCT....................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................TTGAT---------------TTAATTA---------------------------------------TTT-AT-----------ATC-TTC-TGCAG..................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GGTGATCAACGGCGACTGC	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TCGGTCTGCTGGCTCTGGCCA.........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GTTCCCCTGTCGCCCGATCC............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................CGCCCGATCCAGGAAATGTG..................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GTGGTGATCAACGGCGAC...	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TCCAGGAAATGTGGTGATCAA..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................AATTA---------------------------------------TTT-AT-----------ATC-TTC-TGCAGCT................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GTCTTCGTGCTCGGTCTGCTGGC.................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGTGGTGATCAACGGCGACT..	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGTGGTGATCAACGGCGACC..	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CGCCCGATCCAGGAAATG....................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GGAAATGTGGTGATCAACGGC......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................ATCCAGGAAATGTGGTGATCAACGGC......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
CTTCTCAGTCGTTACCGTCTTCGTG...............................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GATCCAGGAAATGTGGTGATCAACGGC......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................TGCTCGGTCTGCTGGCTCTGGCCAACG......................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CGTTACCGTCTTCGTGCT.............................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCCCGATCCAGGAAATGTG..................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........TTACCGTCTTCGTGCTCGGTCTGCT....................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTCTGCTGGCTCTGGCCAA........................................................................................................................................................................................................	19	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTCTCAGTCGTTACCGTCTTCGTG...............................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTGCTCGGTCTGCTGGCTCTGGC...........................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCGTGCTCGGTCTGCTGGC.................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCGTGCTCGGTCTGCTGG..................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GGTCTGCTGGCTCTGGCCAA........................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

CTTCTCAGTCGTCACCGTCTTTGTGTTCGGTCTGCTGGCTCTGGCCAACGGTTAGTA-A---T----ACTAT--A--T---TTTATAGCTAT----------TTGATTA--------CTTTATAAATTA---------------------------------------TTT-AT-----------TTC-TTC-CGCAGCTGTTCCCCTGTCGCCCGATCCAGGAAATGTGGTAATCAACGGGGACTGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........GTCACCGTCTTTGTGTTC............................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GTCACCGTCTTTGTGTTCGGTCTGC.....................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCTCAGTCGTCACCGTCTTTG.................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................GCCCGATCCAGGAAATGTGGT................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0
................GTCTTTGTGTTCGGTCTGCT....................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................CTGTCGCCCGATCCAGGAAAT.....................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGTCGCCCGATCCAGGAAATGTG..................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................TCGGTCTGCTGGCTCTGGTTT.........................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

CTTCTCAGTTGTCACTGTCTTTGTGCTCGGTCTGCTGGCACTGGCCAATGGTGAGTT-T---AAAC---TAT--A--A---GTAACTAATAG----------TTTATAAA-------TATAATTAATTA---------------------------------------TAT-AT---------T-TTA-CTCCAACAGCTGTCCCCCTGTCCCCCGATCCAGGCAATGTCATCATCAACGGTGACTGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTTCTCAGTCGTCACCGTCCTTGTGCTCGGTCTGCTGGCCCTGGCCAACGGTGAGTT-G---AACC---TAC--A--A---GCTTCCAAGAG----------CTGATAA--------TTTTATTAACTA---------------------------------------ACC-AT-----------CTT-TCC-CTCAGCTGTTCCCCTGTCGCCCGATCCTGGCAATGTGGTCATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTTCTCAGTCGTCACCGTCTTTGTGCTCGGTCTGCTGGCCCTGGCCAACGGTGAGTT-G---AATC---TAT--A--A---ACTTCCAATAC----------CCGAACA--------ATTAATAAATGA---------------------------------------ACT-AT-----------CTA-CCC-TTCAGCTGTTCCCCTGTCGCCCGATCCAGGAAATGTGGTTATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTTCTCAGTCGTCACCGTCTTCGTGCTGGGTCTGCTGGCTCTGGCCAACGGTTAGTA-A---AGAC---TAT--A--A---GCTA------TTT--TAAA--------A--------CTTATTTATTTTACTAA-----------------------------TTT--GTT-TT-----------TTA-CCC-TTCAGCCGTTCCCCTGTCGCCCGATCCCGGAAATGTGATCATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTTCTCAGTCGTCACCGTCTTTGTGCTCGGTTTGCTGGCTCTGGCCAATGGTTAGTA-A---AA----ATGT--A--A---ACTAT---TTC-----TTAACTTG------------TTTAAGTAATTT---------------------------------------ATT-AT---------T-TTA-TTC-CTCAGCTGTTCCGCTGTCCCCCGATCCAGGAAATGTGATCATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTTCTCAGTCGTCACCGTCTTTGTTCTCGGTCTGCTGGCTCTCGCCAACGGTGAGTG-A---AGTC---TAT--T--C---GTTA------A----------TAGATCG--------CTAAATTAATTCATTAA-----------------------------TTT--GTT-GT---------TTATT-CCC-AACAGCCGTCCCCTTGTCGCCCGATCCAGGAAATGTTGTTATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTTCTCCGTTGTCACCGTCTTCGTTTTCGGTCTGCTGGCCCTGGCCAACGGTGAGTT-G---AGGC---TCT--C--ATCTTC---C-----TG--AA----TGAATTA--------TTTTATT--------AATTCCTATTATTT--------------------------CT-----------ATT-ATT-TGTAGCTGTTCCCCTGTCGCCCGATCCCGGAAATGTGGTCATCAATGGCGACTGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTTCTCAGTTGTCACTGTCTTCGTTCTCGGACTCCTGGCTCTGGCCAACGGTGAGTA-A---AATCTTCTAT--A--T---TCTAT------TT--AAAA-----TACA--------ATTTATT--------AAATA--TATATTT--------------------TTAAT-A------------TTT-TCC-AATAGCTGTTCCTCTGTCCCCTGATCCCGGAAATGTCATCATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................GTCATCATCAACGGCGACTGC	21	1	2.00	2	1	1	0	0	0	0
........................................................................................................................................................................................................GTTCCTCTGTCCCCTGATCCC...........................	21	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................TGTCATCATCAACGGCGAC...	19	1	2.00	2	0	0	0	1	0	1
...............................................................................................................................................................................................................................AAATGTCATCATCAACGGCGA....	21	1	1.00	1	1	0	0	0	0	0
......................GTTCTCGGACTCCTGGCTCTGGCC..........................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................CGTTCTCGGACTCCTGGCTCTGGC...........................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................CCTCTGTCCCCTGATCCCG..........................	19	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................CTGATCCCGGAAATGTCATC...............	20	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................GTCCCCTGATCCCGGAAATG....................	20	1	1.00	1	1	0	0	0	0	0
..........GTCACTGTCTTCGTTCTCGGACT.......................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................GGAAATGTCATCATCAACGG.......	20	1	1.00	1	1	0	0	0	0	0
.......................TTCTCGGACTCCTGGCTCTGGCCA.........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................CTTCGTTCTCGGACTCCTGGCTCTGGC...........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................CTCTGTCCCCTGATCCCGGA........................	20	1	1.00	1	1	0	0	0	0	0
............CACTGTCTTCGTTCTCGGACT.......................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................TCCTCTGTCCCCTGATCCCGGAAA......................	24	1	1.00	1	1	0	0	0	0	0
........................TCTCGGACTCCTGGCTCTGGCCAACGC.....................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......AGTTGTCACTGTCTTCGTTCTCGG..........................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................CCTCTGTCCCCTGATCCCGGAAATGTCA.................	28	1	1.00	1	1	0	0	0	0	0
..................CTTCGTTCTCGGACTCCTG...................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................TCCCGGAAATGTCATCATCAAC.........	22	1	1.00	1	0	1	0	0	0	0
............................GGACTCCTGGCTCTGGCC..........................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................TGATCCCGGAAATGTCATCATCAAC.........	25	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................AAATGTCATCATCAACGGC......	19	1	1.00	1	1	0	0	0	0	0
......................GTTCTCGGACTCCTGGCTCTGGC...........................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................GGAAATGTCATCATCAACGGC......	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................ATGTCATCATCAACGGCGA....	19	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................AATGTCATCATCAACGGCGAC...	21	1	1.00	1	0	1	0	0	0	0

droBip1

CTTCTCAGTTGTCACTGTCTTCGTTCTCGGCCTCCTGGCTCTGGCCAATGGTGAGTT-T---AAACAACTAT--A--T---TTTTT------TA--AATA-----CGTA--------TTTAATT--------AAATA--AATATTT--------------------CTAAT-AT-----------TTT-CTA-AATAGCTGTTCCCCTGTCCCCTGATCCCGGCAATGTCATCATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CTTCTCAGTTGTCACCGTCTTTGTGCTCGGTCTGCTCGCCCTGGCCAATGGTGAGTT-A---AGCGC-----CTG--ATAAGC-----------CTTC---A-------AT---------------------ATCTACTATAATTTACGATAT----------------------------------------TCCAGCTGTTCCCCTGTCGCCCGATCCCGGCAATGTGGTCATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................TGTGGTCATCAACGGCGACTG.	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......GTTGTCACCGTCTTTGTGCTCGGTCT.......................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........GTCACCGTCTTTGTGCTCGGTC........................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................TCGCCCTGGCCAATGGTGAGTT-A---AGCGC-----C...............................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................GCTGTTCCCCTGTCGCCCGATCCC...........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CTCAGTTGTCACCGTCTTTGTGCTC............................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................TGCTCGGTCTGCTCGCCCTG.............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CTCGGTCTGCTCGCCCTGGCCAA........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................ATCCCGGCAATGTGGTCATCAACG........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GTGGTCATCAACGGCGACT..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................CTTTGTGCTCGGTCTGCTC...................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GCTCGGTCTGCTCGCCCTGGC...........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................TGCTCGGTCTGCTCGCCCTGGC...........................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................TCTTTGTGCTCGGTCTGC.....................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CCGGCAATGTGGTCATCAACGGCG.....	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AATGTGGTCATCAACGGCGACTGC	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................GTGCTCGGTCTGCTCGCCCTGGCC..........................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCCCGATCCCGGCAATGTGGTCATCAACGG.......	30	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.......GTTGTCACCGTCTTTGTGCTCGGT.........................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................TTGTGCTCGGTCTGCTCGCCC...............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CGTCTTTGTGCTCGGTCTGCTCGCCCT..............................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GCTGTTCCCCTGTCGCCCGATCCCGGC........................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

CTTCTCAGTTGTCACCGTCTTTGTGCTCGGTCTGCTCGCCCTGGCCAATGGTGAGTT-A---AGCGC-----CTG--ATAAGC-----------CTTC---A-------AT---------------------ATTTACTATAATTTACGATAT----------------------------------------TCCAGCTGTTCCCCTGTCGCCCGATCCCGGCAATGTGGTCATCAACGGCGACTGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................AATGTGGTCATCAACGGC......	18	1	4.00	4	4	0	0	0	0	0
..................................................................................................................................................................................................................CGCCCGATCCCGGCAATGTGGT................	22	1	3.00	3	1	0	2	0	0	0
..TCTCAGTTGTCACCGTCTTTGTGCTC............................................................................................................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0
............CACCGTCTTTGTGCTCGGTCTGCT....................................................................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
...............CGTCTTTGTGCTCGGTCT.......................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.....................TGTGCTCGGTCTGCTCGCCCT..............................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................CGCCCGATCCCGGCAATGTG..................	20	1	2.00	2	2	0	0	0	0	0
......................GTGCTCGGTCTGCTCGCCCT..............................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
.....................TGTGCTCGGTCTGCTCGCCCTGG............................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................CCTGTCGCCCGATCCCGGC........................	19	1	2.00	2	0	0	0	0	2	0
...........................CGGTCTGCTCGCCCTGGC...........................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................GTTCCCCTGTCGCCCGATCCCGGCAATGG...................	29	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................CGGCAATGTGGTCATCAACGGC......	22	1	1.00	1	0	0	1	0	0	0
..................CTTTGTGCTCGGTCTGCG....................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.....................TGTGCTCGGTCTGCTCGCCCTGGCC..........................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................TTGTGCTCGGTCTGCTCGCCCTGGCCA.........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................TTGTGCTCGGTCTGCTCGCCCTGGCC..........................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........TGTCACCGTCTTTGTGCTCGGTCTGCG....................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................TTTGTGCTCGGTCTGCTCGCC................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
............CACCGTCTTTGTGCTCGGTCTGCG....................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................GTGCTCGGTCTGCTCGCCCTGGC...........................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................CTTTGTGCTCGGTCTGCTCGCCCT..............................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................GTCTTTGTGCTCGGTCTGCTC...................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droWil2

CTTCTCAGTTGTCACCGTTTTCGTGCTGGGTCTTTTGGCTTTGGCCAATGGTAAGTC-TTAATTC-----AGATCTCT---AATG-----AT----------GCGAACT-TGTCATTTCTAAC-AATGA---------------------------------------TCT-TTTG---------CTT-CTA-TTCAGCTGTCCCTCTGTCACCTGATCCCGGCAATGTGGTCATCAACGGGGACTGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........GTCACCGTTTTCGTGCTGGGTC........................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0
................GTTTTCGTGCTGGGTCTT......................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................CCCGGCAATGTGGTCATCAAC.........	21	2	1.00	2	2	0	0	0	0
...................TTCGTGCTGGGTCTTTTGGC.................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0
......................................................................................................................................................................................................................TGATCCCGGCAATGTGGTCA..............	20	2	0.50	1	0	0	0	0	1
...............................................................................................................................GA---------------------------------------TCT-TTTG---------CTT-CTA-TTCAG..................................................	20	2	0.50	1	0	1	0	0	0
.................................................................................................................................................................................................................TCACCTGATCCCGGCAATG....................	19	2	0.50	1	0	1	0	0	0
.......................................................................................................................................................................................................................GATCCCGGCAATGTGGTCATCAACGGGGA....	29	2	0.50	1	0	0	1	0	0
......................GTGCTGGGTCTTTTGGCTTTGGCCAAT.......................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	1
....................TCGTGCTGGGTCTTTTGGCTTTGG............................................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0
.........................CTGGGTCTTTTGGCTTTGGCC..........................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0
..............................................................................................................................................................................................................................GCAATGTGGTCATCAACGGGGACTG.	25	2	0.50	1	0	1	0	0	0

droVir3

CCTGTCGGTTGC------ATTTCTGCTGGGTCTGCTGGCTTTGGCTAGTGGTGAGTACTTAAAGA-----AG--A--T---CATAATGCAAA----------AATAATA--------TTTAACACTTTC---------------------------------------TTT-TT-----------TGT-CTC-GACAGCCACGCCCTTG------AATCCTGGCAACGTGATCATCAACGGTGATTGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................GCCCTTG------AATCCTGGCAACGTGAT................	24	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CCTTG------AATCCTGGCAACGTGAT................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CTTG------AATCCTGGCAACGTGA.................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GCCACGCCCTTG------AATCCTGGC........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TG------AATCCTGGCAACGTGAT................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTGC------ATTTCTGCTGGGTCTGC.....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................ATTTCTGCTGGGTCTGCT....................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AACGTGATCATCAACGGTGATTGC	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGC------ATTTCTGCTGGGTCTGC.....................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................G------AATCCTGGCAACGTGAT................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................ACTTAAAGA-----AG--A--T---CATAATGCAAA----------AA................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCTGGGTCTGCTGGCTTT..............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CTGGCAACGTGATCATCAACGGTG.....	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CTTCTCAGTTGTTACCGTCTTTGTGCTCGGTCTCTTGGCTCTGGCCAATGGTGAGTA-GCA-AATGC-----TCA--AGCAGA-----------ATGG---G-------AT---------------------ATATGTATTAGCTAAATATATTTCT--------C--TCTCTCTCCCTCGTCCTCTCTCAC-TTTAGCTGTTCCATTGTCGCCCGATCCAGGCAATGTGGTCATCAATGGCGATTGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................TTCCATTGTCGCCCGATCCAG..........................	21	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................CAATGTGGTCATCAATGGCGATTG.	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................TGGTCATCAATGGCGATTG.	19	1	1.00	1	0	0	0	1	0	0
.........................CTCGGTCTCTTGGCTCTGGCCAATG......................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................TTCCATTGTCGCCCGATC.............................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................ATGTGGTCATCAATGGCGATTGC	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................CCCGATCCAGGCAATGTGGTC...............	21	1	1.00	1	0	0	0	0	0	1
.....CAGTTGTTACCGTCTTTG.................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................GCAATGTGGTCATCAATGGCGATTG.	25	1	1.00	1	0	0	0	1	0	0

droGri2

CTTCTCAGTTGTCACCGTATTCGTGCTCGGTCTCTTGGCTCTGGCCAGTGGTAAGTG-G---C------AAT--A--T---CTAACCA-----------------------------GTTAA-----------------TTCGCTCAGCACAATTCTAAAATATGC--TTTCTTTGTTTTGATTTATC-AAC-AACAGCCGTTCCACTGTCGCCCGAT---GGAGGTGTGGTCATCAACGGTGACTGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................................................................................GTCGCCCGAT---GGAGGTGTGGTC...............	22	1	176.00	176	36	140
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGTGTGGTC...............	24	1	173.00	173	36	137
.............................................................................................................................................................................................................ACTGTCGCCCGAT---GGAGGTGTGGTC...............	25	1	120.00	120	24	96
...................................................................................................................................................................................................................GCCCGAT---GGAGGTGTGGTC...............	19	1	100.00	100	36	64
.............................................................................................................................................................................................................ACTGTCGCCCGAT---GGAGGTGTG..................	22	1	79.00	79	18	61
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGTGTGGTCA..............	25	1	70.00	70	12	58
.............................................................................................................................................................................................................ACTGTCGCCCGAT---GGAGGTGTGGTCA..............	26	1	54.00	54	16	38
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGTGTG..................	21	1	45.00	45	12	33
...................................................................................................................................................................................................................GCCCGAT---GGAGGTGTGGTCA..............	20	1	44.00	44	11	33
.............................................................................................................................................................................................................ACTGTCGCCCGAT---GGAGGTGTGGT................	24	1	44.00	44	10	34
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGAGGTGTGGTC...............	27	1	41.00	41	7	34
............................................................................................................................................................................................................CACTGTCGCCCGAT---GGAGGTGTGGTC...............	26	1	38.00	38	13	25
................................................................................................................................................................................................................GTCGCCCGAT---GGAGGTGTGGTCA..............	23	1	37.00	37	21	16
....................................................................................................................................................................................................................CCCGAT---GGAGGTGTGGTC...............	18	1	32.00	32	31	1
................................................................................................................................................................................................................GTCGCCCGAT---GGAGGTGTGGT................	21	1	30.00	30	15	15
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGAGGTGTG..................	24	1	26.00	26	6	20
.............................................................................................................................................................................................................ACTGTCGCCCGAT---GGAGGTGT...................	21	1	23.00	23	4	19
...............................................................................................................................................................................................................TGTCGCCCGAT---GGAGGTGTGGTC...............	23	1	23.00	23	6	17
.............................................................................................................................................................................................................ACTGTCGCCCGAT---GGAGGT.....................	19	1	22.00	22	10	12
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGTGTGGT................	23	1	22.00	22	9	13
................................................................................................................................................................................................................GTCGCCCGAT---GGAGGTGTG..................	19	1	21.00	21	21	0
.............................................................................................................................................................................................................ACTGTCGCCCGAT---GGAGGTG....................	20	1	20.00	20	19	1
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGTGT...................	20	1	19.00	19	3	16
..............................................................................................................................................................................................................................GAGGTGTGGTCATCAACGGT......	20	1	19.00	19	8	11
............................................................................................................................................................................................................CACTGTCGCCCGAT---GGAGGTGTG..................	23	1	17.00	17	6	11
....................................................................................................................................................................................................................CCCGAT---GGAGGTGTGGTCA..............	19	1	16.00	16	9	7
..................................................................................................................................................................................................................CGCCCGAT---GGAGGTGTGGTC...............	20	1	15.00	15	5	10
.......GTTGTCACCGTATTCGTGCTCG...........................................................................................................................................................................................................................	22	1	13.00	13	8	5
.........................CTCGGTCTCTTGGCTCTG.............................................................................................................................................................................................................	18	1	12.00	12	12	0
...................................................................................................................................................................................................................GCCCGAT---GGAGGTGTGGTCATC............	22	1	12.00	12	2	10
...................................................................................................................................................................................................................GCCCGAT---GGAGGTGTGGT................	18	1	11.00	11	11	0
.................................................................................................................................................................................................................TCGCCCGAT---GGAGGTGTGGTC...............	21	1	10.00	10	2	8
.........................CTCGGTCTCTTGGCTCTGG............................................................................................................................................................................................................	19	1	10.00	10	9	1
......................................................................................................................................................................................................................CGAT---GGAGGTGTGGTCATC............	19	1	10.00	10	1	9
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGT.....................	18	1	10.00	10	8	2
.....................CGTGCTCGGTCTCTTGGCTCTG.............................................................................................................................................................................................................	22	1	10.00	10	7	3
................................................................................................................................................................................................................GTCGCCCGAT---GGAGGTGTGG.................	20	1	9.00	9	3	6
................GTATTCGTGCTCGGTCTCTTG...................................................................................................................................................................................................................	21	1	9.00	9	6	3
............................................................................................................................................................................................................CACTGTCGCCCGAT---GGAGGTGTGGTCA..............	27	1	9.00	9	5	4
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGTGTGGTCATC............	27	1	9.00	9	4	5
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGAGGTGT...................	23	1	9.00	9	1	8
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGAGGT.....................	21	1	8.00	8	4	4
.........................CTCGGTCTCTTGGCTCTGGC...........................................................................................................................................................................................................	20	1	8.00	8	8	0
......................GTGCTCGGTCTCTTGGCTCTG.............................................................................................................................................................................................................	21	1	8.00	8	8	0
.............................................................................................................................................................................................................ACTGTCGCCCGAT---GGAGGTGTGG.................	23	1	7.00	7	0	7
.......................................................................................................................................................................................................................GAT---GGAGGTGTGGTCATC............	18	1	7.00	7	4	3
................................................................................................................................................................................................................................GGTGTGGTCATCAACGGT......	18	1	6.00	6	6	0
.......................................................................................................................................................................................................................GAT---GGAGGTGTGGTCATCAACGGT......	24	1	6.00	6	2	4
........................................................................................................................................................................................................GTTCCACTGTCGCCCGAT---G..........................	19	1	6.00	6	6	0
...CTCAGTTGTCACCGTATTCG.................................................................................................................................................................................................................................	20	1	6.00	6	3	3
.........................CTCGGTCTCTTGGCTCTGGCC..........................................................................................................................................................................................................	21	1	6.00	6	6	0
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGTGTGG.................	22	1	6.00	6	2	4
........................................................................................................................................................................................................GTTCCACTGTCGCCCGAT---GGAGGTGTG..................	27	1	6.00	6	2	4
............................................................................................................................................................................................................CACTGTCGCCCGAT---GGAGGTGTGGT................	25	1	6.00	6	3	3
..........GTCACCGTATTCGTGCTCG...........................................................................................................................................................................................................................	19	1	5.00	5	5	0
....TCAGTTGTCACCGTATTCG.................................................................................................................................................................................................................................	19	1	5.00	5	3	2
.......................................................................................................................................................................................................................GAT---GGAGGTGTGGTCATCA...........	19	1	5.00	5	1	4
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGTG....................	19	1	5.00	5	5	0
........................................................................................................................................................................................................GTTCCACTGTCGCCCGAT---GGAGGTGT...................	26	1	5.00	5	1	4
..............................................................................................................................................................................................................................GAGGTGTGGTCATCAACG........	18	1	5.00	5	3	2
.........................CTCGGTCTCTTGGCTCTGGCCA.........................................................................................................................................................................................................	22	1	5.00	5	5	0
............................................................................................................................................................................................................CACTGTCGCCCGAT---GGAGGTG....................	21	1	5.00	5	3	2
............................................................................................................................................................................................................CACTGTCGCCCGAT---GGAGGT.....................	20	1	5.00	5	2	3
.............................................................................................................................................................................................................ACTGTCGCCCGAT---GGAGG......................	18	1	5.00	5	4	1
.....................................................................................................................................................................................................................CCGAT---GGAGGTGTGGTCATC............	20	1	5.00	5	1	4
.............................................................................................................................................................................................................................GGAGGTGTGGTCATCAACGGT......	21	1	5.00	5	5	0
........................................................................................................................................................................................................GTTCCACTGTCGCCCGAT---GGAGGT.....................	24	1	4.00	4	1	3
...........................CGGTCTCTTGGCTCTGGCC..........................................................................................................................................................................................................	19	1	4.00	4	4	0
................................................................................................................................................................................................................GTCGCCCGAT---GGAGGTGTGGTCATCA...........	26	1	4.00	4	4	0
................GTATTCGTGCTCGGTCTCTTGGCTCTG.............................................................................................................................................................................................................	27	1	4.00	4	1	3
.......GTTGTCACCGTATTCGTGCTC............................................................................................................................................................................................................................	21	1	4.00	4	4	0
...............................................................................................................................................................................................................................AGGTGTGGTCATCAACGGT......	19	1	4.00	4	2	2
......................GTGCTCGGTCTCTTGGCTCTGG............................................................................................................................................................................................................	22	1	4.00	4	3	1
......................GTGCTCGGTCTCTTGGCTCTGGC...........................................................................................................................................................................................................	23	1	4.00	4	4	0
...............................................................................................................................................................................................................TGTCGCCCGAT---GGAGGTGTGGTCA..............	24	1	4.00	4	2	2
................GTATTCGTGCTCGGTCTCTT....................................................................................................................................................................................................................	20	1	4.00	4	3	1
........................GCTCGGTCTCTTGGCTCTGG............................................................................................................................................................................................................	20	1	4.00	4	4	0
.........................CTCGGTCTCTTGGCTCTGGCCAGTGCC....................................................................................................................................................................................................	27	1	4.00	4	4	0
..TCTCAGTTGTCACCGTATTCG.................................................................................................................................................................................................................................	21	1	4.00	4	2	2
................GTATTCGTGCTCGGTCTC......................................................................................................................................................................................................................	18	1	4.00	4	4	0
.......GTTGTCACCGTATTCGTGCTCGGTCT.......................................................................................................................................................................................................................	26	1	4.00	4	4	0
.........................CTCGGTCTCTTGGCTCTGGCCAGTG......................................................................................................................................................................................................	25	1	4.00	4	4	0
........................................................................................................................................................................................................GTTCCACTGTCGCCCGAT---GGA........................	21	1	4.00	4	3	1
...............................................................................................................................................................................................................TGTCGCCCGAT---GGAGGTGTGGTCATC............	26	1	4.00	4	1	3
.......GTTGTCACCGTATTCGTG...............................................................................................................................................................................................................................	18	1	4.00	4	4	0
.....................CGTGCTCGGTCTCTTGGCTCT..............................................................................................................................................................................................................	21	1	4.00	4	3	1
................................................................................................................................................................................................................GTCGCCCGAT---GGAGGTGTGGTCATC............	25	1	4.00	4	3	1
......................GTGCTCGGTCTCTTGGCTCTGGCC..........................................................................................................................................................................................................	24	1	4.00	4	4	0
........................................................................................................................................................................................................................AT---GGAGGTGTGGTCATCAACG........	21	1	3.00	3	1	2
.....................CGTGCTCGGTCTCTTGGCTCTGGC...........................................................................................................................................................................................................	24	1	3.00	3	2	1
......................................................................................................................................................................................................................CGAT---GGAGGTGTGGTCATCA...........	20	1	3.00	3	2	1
................GTATTCGTGCTCGGTCTCTTGGCT................................................................................................................................................................................................................	24	1	3.00	3	1	2
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGAGGTGTGGT................	26	1	3.00	3	2	1
.............................GTCTCTTGGCTCTGGCCAGTG......................................................................................................................................................................................................	21	1	3.00	3	3	0
..........................TCGGTCTCTTGGCTCTGGC...........................................................................................................................................................................................................	19	1	3.00	3	3	0
.......................................................................................................................................................................................................................GAT---GGAGGTGTGGTCATCAACG........	22	1	3.00	3	2	1
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGAGGTGTGGTCA..............	28	1	3.00	3	0	3
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGAGGTG....................	22	1	3.00	3	3	0
..............................................................................................................................................................................................................................GAGGTGTGGTCATCAACGGTGACTGC	26	1	3.00	3	3	0
.....................................................................................................................................................................................................................CCGAT---GGAGGTGTGGTCA..............	18	1	3.00	3	2	1
.......................TGCTCGGTCTCTTGGCTCTG.............................................................................................................................................................................................................	20	1	3.00	3	1	2
.....CAGTTGTCACCGTATTCGTG...............................................................................................................................................................................................................................	20	1	3.00	3	1	2
........................................................................................................................................................................................................................AT---GGAGGTGTGGTCATCAACGGT......	23	1	3.00	3	1	2
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGA........................	18	1	3.00	3	3	0
...................................................................................................................................................................................................................GCCCGAT---GGAGGTGTGGTCATCAACGGT......	28	1	3.00	3	1	2
..........GTCACCGTATTCGTGCTCGGTC........................................................................................................................................................................................................................	22	1	3.00	3	3	0
...CTCAGTTGTCACCGTATTCGTGCTCG...........................................................................................................................................................................................................................	26	1	3.00	3	1	2
........................................................................................................................................................................................................................AT---GGAGGTGTGGTCATCAAC.........	20	1	3.00	3	1	2
.............ACCGTATTCGTGCTCGGTCTCTTG...................................................................................................................................................................................................................	24	1	3.00	3	3	0
...................TTCGTGCTCGGTCTCTTG...................................................................................................................................................................................................................	18	1	3.00	3	3	0
..........................................................................................................................................................................................................TCCACTGTCGCCCGAT---GGAGGTGTGGTC...............	28	1	3.00	3	0	3
...............................................................................................................................................................................................................TGTCGCCCGAT---GGAGGTGTG..................	20	1	3.00	3	0	3
...................................................................................................................................................................................................................GCCCGAT---GGAGGTGTGGTCAT.............	21	1	3.00	3	3	0
............................................................................................................................................................................................................CACTGTCGCCCGAT---GGAG.......................	18	1	3.00	3	3	0
......................................................................................................................................................................................................................CGAT---GGAGGTGTGGTCATCAACGGT......	25	1	3.00	3	1	2
.......GTTGTCACCGTATTCGTGCTCGGT.........................................................................................................................................................................................................................	24	1	3.00	3	3	0
..........GTCACCGTATTCGTGCTCGGTCT.......................................................................................................................................................................................................................	23	1	3.00	3	3	0
.................................................................................................................................................................................................................TCGCCCGAT---GGAGGTGTGGTCA..............	22	1	3.00	3	1	2
.......................TGCTCGGTCTCTTGGCTCTGGCCAGTG......................................................................................................................................................................................................	27	1	3.00	3	3	0
.....................CGTGCTCGGTCTCTTGGCTC...............................................................................................................................................................................................................	20	1	2.00	2	0	2
.......................................................................................................................................................................................................CGTTCCACTGTCGCCCGAT---GGA........................	22	1	2.00	2	2	0
.............................................................................................................................................................................................................................GGAGGTGTGGTCATCAACGGTGACTGC	27	1	2.00	2	1	1
.......................................................................................................................................................................................................................GAT---GGAGGTGTGGTCATCAACGGTG.....	25	1	2.00	2	1	1
.....CAGTTGTCACCGTATTCGTGCTCG...........................................................................................................................................................................................................................	24	1	2.00	2	2	0
.....................CGTGCTCGGTCTCTTGGCT................................................................................................................................................................................................................	19	1	2.00	2	2	0
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGTGTGGTCATCA...........	28	1	2.00	2	1	1
................................................................................................................................................................................................................GTCGCCCGAT---GGAGGTGTGGTCT..............	23	1	2.00	2	0	2
....................................................................................................................................................................................................................CCCGAT---GGAGGTGTGGTCATC............	21	1	2.00	2	2	0
........................................................................................................................................................................................................................AT---GGAGGTGTGGTCATCAACGGTGACT..	27	1	2.00	2	1	1
........................................................................................................................................................................................................GTTCCACTGTCGCCCGAT---GG.........................	20	1	2.00	2	2	0
......................................................................................................................................................................................................................CGAT---GGAGGTGTGGTCATCAAC.........	22	1	2.00	2	0	2
....................TCGTGCTCGGTCTCTTGGCT................................................................................................................................................................................................................	20	1	2.00	2	1	1
..........GTCACCGTATTCGTGCTCGGT.........................................................................................................................................................................................................................	21	1	2.00	2	2	0
...............CGTATTCGTGCTCGGTCTCTTG...................................................................................................................................................................................................................	22	1	2.00	2	1	1
..................................................................................................................................................................................................................CGCCCGAT---GGAGGTGTGGTCA..............	21	1	2.00	2	2	0
........................GCTCGGTCTCTTGGCTCTGGC...........................................................................................................................................................................................................	21	1	2.00	2	2	0
.................................................................................................................................................................................................................TCGCCCGAT---GGAGGTGTGGTCATC............	24	1	2.00	2	2	0
......AGTTGTCACCGTATTCGTGCTCG...........................................................................................................................................................................................................................	23	1	2.00	2	2	0
......................GTGCTCGGTCTCTTGGCTCTGGCCA.........................................................................................................................................................................................................	25	1	2.00	2	2	0
.......................TGCTCGGTCTCTTGGCTCTGG............................................................................................................................................................................................................	21	1	2.00	2	1	1
........................................................................................................................................................................................................................AT---GGAGGTGTGGTCATCAACGGTG.....	24	1	2.00	2	0	2
......................GTGCTCGGTCTCTTGGCTCT..............................................................................................................................................................................................................	20	1	2.00	2	1	1
.......GTTGTCACCGTATTCGTGCTCGGTCTC......................................................................................................................................................................................................................	27	1	2.00	2	2	0
..........................TCGGTCTCTTGGCTCTGGCCAGTGCC....................................................................................................................................................................................................	26	1	2.00	2	2	0
.....................................................................................................................................................................................................GCCGTTCCACTGTCGCCCG................................	19	1	2.00	2	2	0
.........................................................................................................................................................................................................TTCCACTGTCGCCCGAT---GGAGGTGT...................	25	1	2.00	2	0	2
.............................................................................................................................................................................................................ACTGTCGCCCGAT---GGAGGTGTGGTCATC............	28	1	2.00	2	1	1
.................................................................................................................................................................................................................TCGCCCGAT---GGAGGTGTGGTCATCA...........	25	1	2.00	2	1	1
........................................................................................................................................................................................................GTTCCACTGTCGCCCGAT---GGAGG......................	23	1	2.00	2	2	0
......AGTTGTCACCGTATTCGTGCTCGGTCT.......................................................................................................................................................................................................................	27	1	2.00	2	2	0
....................................................................................................................................................................................................................CCCGAT---GGAGGTGTGGTCATCAACGGT......	27	1	2.00	2	1	1
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGAGG......................	20	1	2.00	2	2	0
.......................................................................................................................................................................................................................GAT---GGAGGTGTGGTCATCAACGGTGACT..	28	1	2.00	2	1	1
..............................................................................................................................................................................................................CTGTCGCCCGAT---GGAGGTGTGGTCAT.............	26	1	2.00	2	1	1
............................................................................................................................................................................................................CACTGTCGCCCGAT---GGAGGTGT...................	22	1	2.00	2	0	2
...................TTCGTGCTCGGTCTCTTGGCTCTG.............................................................................................................................................................................................................	24	1	2.00	2	2	0
.....CAGTTGTCACCGTATTCG.................................................................................................................................................................................................................................	18	1	2.00	2	2	0
........................GCTCGGTCTCTTGGCTCTGGCC..........................................................................................................................................................................................................	22	1	2.00	2	2	0
..........................................................................................................................................................................................................TCCACTGTCGCCCGAT---GGAG.......................	20	1	2.00	2	2	0
.............................................................................................................................................................................................................................GGAGGTGTGGTCATCAACG........	19	1	2.00	2	2	0
.........................................................................................................................................................................................................TTCCACTGTCGCCCGAT---GGAGGTGTGGTC...............	29	1	2.00	2	0	2
.TTCTCAGTTGTCACCGTATTCGTG...............................................................................................................................................................................................................................	24	1	2.00	2	2	0
..............CCGTATTCGTGCTCGGTCTC......................................................................................................................................................................................................................	20	1	2.00	2	2	0
.......................................................................................................................................................................................................................GAT---GGAGGTGTGGTCATCAACGGTGA....	26	1	2.00	2	2	0
.......................TGCTCGGTCTCTTGGCTC...............................................................................................................................................................................................................	18	1	2.00	2	0	2
.............................................................................................................................................................................................................................GGAGGTGTGGTCATCAACGGTGAC...	24	1	2.00	2	2	0
.......GTTGTCACCGTATTCGTGCT.............................................................................................................................................................................................................................	20	1	2.00	2	2	0
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGAGGTGTGG.................	25	1	2.00	2	2	0
......................................................................................................................................................................................................................CGAT---GGAGGTGTGGTCATCAACG........	23	1	2.00	2	0	2
.....................CGTGCTCGGTCTCTTGGCTCTGG............................................................................................................................................................................................................	23	1	2.00	2	1	1
...............................................................................................................................................................................................................TGTCGCCCGAT---GGAGGTG....................	18	1	2.00	2	2	0
...........................CGGTCTCTTGGCTCTGGC...........................................................................................................................................................................................................	18	1	2.00	2	2	0
.........................CTCGGTCTCTTGGCTCTGGCCAGT.......................................................................................................................................................................................................	24	1	2.00	2	0	2
.......................................................................................................................................................................................................CGTTCCACTGTCGCCCGAT---GGAGGT.....................	25	1	2.00	2	0	2
......................................................................................................................................................................................................CCGTTCCACTGTCGCCCGAT---G..........................	21	1	2.00	2	2	0
...........................CGGTCTCTTGGCTCTGGCCA.........................................................................................................................................................................................................	20	1	2.00	2	2	0
.......................TGCTCGGTCTCTTGGCTCT..............................................................................................................................................................................................................	19	1	2.00	2	2	0
................GTATTCGTGCTCGGTCTCTTGGCTCTGG............................................................................................................................................................................................................	28	1	2.00	2	2	0
........................GCTCGGTCTCTTGGCTCTG.............................................................................................................................................................................................................	19	1	2.00	2	2	0
.......................................................................................................................................................................................................................GAT---GGAGGTGTGGTCATCAAC.........	21	1	2.00	2	0	2
...................................................................................................................................................................................................................GCCCGAT---GGAGGTGTGGTCATCA...........	23	1	2.00	2	0	2
..............................................................................................................................................................................................................................GAGGTGTGGTCATCAACGGTGA....	22	1	2.00	2	2	0
......AGTTGTCACCGTATTCGTGCTCGGTC........................................................................................................................................................................................................................	26	1	2.00	2	1	1
.............ACCGTATTCGTGCTCGGTCTC......................................................................................................................................................................................................................	21	1	2.00	2	2	0
.......................TGCTCGGTCTCTTGGCTCTGGC...........................................................................................................................................................................................................	22	1	2.00	2	2	0
..........GTCACCGTATTCGTGCTCGGTCTCTTG...................................................................................................................................................................................................................	27	1	2.00	2	2	0
................GTATTCGTGCTCGGTCTCTTGGC.................................................................................................................................................................................................................	23	1	2.00	2	1	1
................................................................................................................................................................................................................GTCGCCCGAT---GGAGGTGTGGTCC..............	23	1	2.00	2	0	2
...............................CTCTTGGCTCTGGCCAGTGCCG...................................................................................................................................................................................................	22	2	1.50	3	3	0
............CACCGTATTCGTGCTCGGT.........................................................................................................................................................................................................................	19	1	1.00	1	1	0
...CTCAGTTGTCACCGTATTCGTG...............................................................................................................................................................................................................................	22	1	1.00	1	1	0
....................................................................................................................................................................................................................CCCGAT---GGAGGTGTGGTCATCA...........	22	1	1.00	1	1	0
..TCTCAGTTGTCACCGTATTCGTGCTC............................................................................................................................................................................................................................	26	1	1.00	1	1	0
.............................GTCTCTTGGCTCTGGCCAGTGCC....................................................................................................................................................................................................	23	1	1.00	1	1	0
.................................................................................................................................................................................................................TCGCCCGAT---GGAGGTGTGG.................	19	1	1.00	1	1	0
.........................CTCGGTCTCTTGGCTCTGGCCAGTGC.....................................................................................................................................................................................................	26	1	1.00	1	1	0
........................GCTCGGTCTCTTGGCTCTGGCCA.........................................................................................................................................................................................................	23	1	1.00	1	1	0
..........................TCGGTCTCTTGGCTCTGGCCAGTG......................................................................................................................................................................................................	24	1	1.00	1	1	0
......................................................................................................................................................................................................................CGAT---GGAGGTGTGGTCAT.............	18	1	1.00	1	0	1
..................ATTCGTGCTCGGTCTCTTGGCTC...............................................................................................................................................................................................................	23	1	1.00	1	1	0
..TCTCAGTTGTCACCGTATTCGTG...............................................................................................................................................................................................................................	23	1	1.00	1	1	0
...............CGTATTCGTGCTCGGTCTCTTGGC.................................................................................................................................................................................................................	24	1	1.00	1	1	0
...CTCAGTTGTCACCGTATTC..................................................................................................................................................................................................................................	19	1	1.00	1	1	0
...............CGTATTCGTGCTCGGTCTCTTGGCA................................................................................................................................................................................................................	25	1	1.00	1	1	0
....................................................................................................................................................................................................................CCCGAT---GGAGGTGTGGTCATCAACG........	25	1	1.00	1	1	0
...............................................................................................................................................................................................................................AGGTGTGGTCATCAACGGTGACTGC	25	1	1.00	1	1	0
.............................GTCTCTTGGCTCTGGCCAGTGCCG...................................................................................................................................................................................................	24	1	1.00	1	1	0
......................................................................................................................................................................................................CCGTTCCACTGTCGCCCGAT---GGAG.......................	24	1	1.00	1	0	1
.....................CGTGCTCGGTCTCTTGGCTCTGGCC..........................................................................................................................................................................................................	25	1	1.00	1	1	0
CTTCTCAGTTGTCACCGTATTCGT................................................................................................................................................................................................................................	24	1	1.00	1	0	1
...........TCACCGTATTCGTGCTCG...........................................................................................................................................................................................................................	18	1	1.00	1	1	0
..................................................................................................................................................................................................................CGCCCGAT---GGAGGTGTGGTCATC............	23	1	1.00	1	0	1
.............................................................................................................................................................................................................................GGAGGTGTGGTCATCAACGGTGACTG.	26	1	1.00	1	1	0
................GTATTCGTGCTCGGTCTCTTGG..................................................................................................................................................................................................................	22	1	1.00	1	1	0
......AGTTGTCACCGTATTCGTG...............................................................................................................................................................................................................................	19	1	1.00	1	0	1
...................................................................................................................................................................................................................GCCCGAT---GGAGGTGTGGTA...............	19	1	1.00	1	0	1
...........................................................................................................................................................................................................CCACTGTCGCCCGAT---GGAGGTGTGTC................	26	1	1.00	1	0	1
.............ACCGTATTCGTGCTCGGTCTCTT....................................................................................................................................................................................................................	23	1	1.00	1	1	0
...................................................................................................................................................................................................................GCCCGAT---GGAGGTGTGGTCATCAACG........	26	1	1.00	1	0	1
......................GTGCTCGGTCTCTTGGCTC...............................................................................................................................................................................................................	19	1	1.00	1	0	1
........................................................................................................................................................................................................GTTCCACTGTCGCCCGAT---...........................	18	1	1.00	1	1	0
..............................................................................................................................................................................................................................GAGGTGTGGTCATCAACGGTGACTG.	25	1	1.00	1	1	0
CTTCTCAGTTGTCACCGTATTCG.................................................................................................................................................................................................................................	23	1	1.00	1	1	0
........................GCTCGGTCTCTTGGCTCT..............................................................................................................................................................................................................	18	1	1.00	1	1	0
......................................................................................................................................................................................................................CGAT---GGAGGTGTGGTCATCAACGGTG.....	26	1	1.00	1	1	0
................................................................................................................................................................................................................GTCGCCCGAT---GGAGGTGTGGTT...............	22	1	1.00	1	1	0
.....CAGTTGTCACCGTATTCGTGCTCGGT.........................................................................................................................................................................................................................	26	1	1.00	1	0	1
..................ATTCGTGCTCGGTCTCTT....................................................................................................................................................................................................................	18	1	1.00	1	1	0
......................................................................................................................................................................................................CCGTTCCACTGTCGCCCGAT---...........................	20	1	1.00	1	0	1
.........................CTCGGTCTCTTGGCTCTGGCCAG........................................................................................................................................................................................................	23	1	1.00	1	1	0
.........................................................................................................................................................................................................TTCCACTGTCGCCCGAT---GGAGGT.....................	23	1	1.00	1	1	0
.....................CGTGCTCGGTCTCTTGGC.................................................................................................................................................................................................................	18	1	1.00	1	1	0
.................TATTCGTGCTCGGTCTCTTGGCT................................................................................................................................................................................................................	23	1	1.00	1	1	0

der_1073

scaffold_4845:8480138-8480200 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads