ID:

der_1004

 Coordinate:

scaffold_4845:369881-370031 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.8 -7.6 -7.5

Flybase annnotation

exon [dere_GLEANR_6161:3]; CDS [Dere\GG21408-cds]; intron [Dere\GG21408-in]

Repeatable elements

NameClassFamilyStrand
Gypsy2-LTR_DMLTRGypsy-
mature
  1. scaffold_1361:2507-2532 -
  2. der_1004  scaffold_4845:369950-369975 -
star
  1. scaffold_1361:2555-2578 -
  2. der_1004  scaffold_4845:369998-370021 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGATTGCTAGGGACTTAGGGAAATATTTTGTATCCTAGTTTCAGTTTCAAACGAACAATTACAATAAACGGTCGCTTGTGATCTACAAAATAAAAACCAATTAATTGTAATAATTTACTGGAGCGTTGGAGTCTTCTATAGACTCAAGGAGAAAACTAATGGCAGTGACAAAACTCGGTCTTTTGTTGGTGTCGGCGCAGATGGATGTGATCGAGAAGATAGAGATAATGACAAGGAAAAAGATAGGAAA
************************************************************.......((((.((....((((..(((((................))))).....))))..)).))))....*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528801
follicle cells		 M055
female body
 V040
embryo
 V108
head
 V107
male body		 M057
embryo
..........................................................................................................TGTAATAATTTACTGGAGCGTTGGAG....................................................................................................................... 26 0 2 12.50 25 21 4 0 0 0 0
...........................................................................................................................................................................................TGGTGTCGGCGCAGATGGATGTGAT....................................... 25 0 3 3.67 11 11 0 0 0 0 0
.........................................................................................................TTGTAATAATTTACTGGAGCGTTGGAG....................................................................................................................... 27 0 2 3.50 7 6 1 0 0 0 0
............................................................TACAATAAACGGTCGCTTGTGATC....................................................................................................................................................................... 24 0 2 3.00 6 0 6 0 0 0 0
..........................................................................................................................................................................................TTGGTGTCGGCGCAGATGGATGTGA........................................ 25 0 3 2.33 7 7 0 0 0 0 0
..........................................................................................................TGTAATAATTTACTGGAGCGTTGGA........................................................................................................................ 25 0 2 2.00 4 4 0 0 0 0 0
...................................................................AACGATCGCTTGTGATCTACAAAACGA............................................................................................................................................................. 27 3 2 2.00 4 4 0 0 0 0 0
........................................................................................................................................................................................TGTTGGTGTCGGCGCAGATGGATG........................................... 24 0 3 1.67 5 4 1 0 0 0 0
......................................................................................................................................................................................TTTGTTGGTGTCGGCGCAGATGGA............................................. 24 0 3 1.33 4 4 0 0 0 0 0
..........................................................................................................TGTAATAATTTACTGGCGCGTTGGAG....................................................................................................................... 26 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................................TACTGGAGCGTTGGAGTCTTCTATAGAC........................................................................................................... 28 0 2 1.00 2 2 0 0 0 0 0
...............................................................................................................TAATTTACTGGAGCGTTGGAGTCT.................................................................................................................... 24 0 2 1.00 2 0 2 0 0 0 0
.........................................................................................................................................TATAGACTCAAGGAGAAAACTAATG......................................................................................... 25 0 2 1.00 2 0 2 0 0 0 0
............GACTTAGGGAAACATTTTGTACCCTAGAT.................................................................................................................................................................................................................. 29 3 2 1.00 2 2 0 0 0 0 0
..............................................................................................................................................................................................................TGTGATCGAGAAGATAGAGATAATGAC.................. 27 0 3 0.67 2 0 2 0 0 0 0
................................................................................................................................................................................................TCGGCGCAGATGGATGTGATCGAGAAGAT.............................. 29 0 3 0.67 2 2 0 0 0 0 0
............................................................................................................................................................................................................................TAGAGATAATGACAAGGAAAAAGA....... 24 0 3 0.67 2 0 2 0 0 0 0
.........................ATTTTGTATCCTAGTTTCA............................................................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 1 0 0
.........................................................................................................................................TATAGACTCAAGGAGAAAACTAATGGC....................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0
...............................................................AATAAACGGTCGCTTGTGATC....................................................................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0 0
.......................................................................................................................TGGAGCGTTGGAGTCTTCTATAGACTC......................................................................................................... 27 0 2 0.50 1 0 0 0 0 1 0
.............................................................................................................................................GACTCAAGGAGAAAACTAATGGCAG..................................................................................... 25 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................................TGTAATAATTTACGGGAGCGTTGGAG....................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................................TATAGACTCAAGGAGAAAACTAATGGCAG..................................................................................... 29 0 2 0.50 1 0 1 0 0 0 0
....................................................................................................ATTAATTGTAATAATTTACTGGAGC.............................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0
................................ATCCTAGTTTCAGTTTCAAACGAACAAAA.............................................................................................................................................................................................. 29 2 2 0.50 1 0 1 0 0 0 0
......................................................................................................TAATTGTAATAATTTACTGGAGCGT............................................................................................................................ 25 0 2 0.50 1 0 1 0 0 0 0
.........................................................................................................................................TATAGACTCAAGGAGAAAACTAATGG........................................................................................ 26 0 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................TAGACTCAAGGAGAAAACTAATGGCAG..................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0
....................................................................................................................TACTGGAGCGTTGGAGTCTTCTA................................................................................................................ 23 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................................TGTAATAATTTACTGGAGCGTTGG......................................................................................................................... 24 0 2 0.50 1 0 1 0 0 0 0
.............................................................ACAATACACGGTCGCTTGTGATC....................................................................................................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0
..........................................CAGTTTCAAACGAACAATTACAATA........................................................................................................................................................................................ 25 0 2 0.50 1 0 1 0 0 0 0
....................................................................................................................TACTGGAGCGTTGGAGTCTTCTAT............................................................................................................... 24 0 2 0.50 1 0 1 0 0 0 0
...............................................................................................................TAATTTACTGGAGCGTTGGAGTCTTC.................................................................................................................. 26 0 2 0.50 1 0 1 0 0 0 0
............................................................TACAATAAACGGTCGCTTGTGA......................................................................................................................................................................... 22 0 2 0.50 1 0 1 0 0 0 0
.................................................................TAAACGATCGCTTGTGATCTACAAAACGA............................................................................................................................................................. 29 3 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GATAGAGATAATGACAAGGAAAAAGA....... 26 0 3 0.33 1 0 1 0 0 0 0
..........................................................................................................................................................................................TTGGTGTCGGCGCAGATGGATGCG......................................... 24 1 3 0.33 1 0 0 1 0 0 0
...................................................................................................................................................................................................................TCGAGAAGATAGAGATAATGACAAGG.............. 26 0 3 0.33 1 0 1 0 0 0 0
..........................................................................................................................................................................................................TGGATGTGATCGAGAAGATAGAGA......................... 24 0 3 0.33 1 0 1 0 0 0 0
..............................................................................................................................................................................................TGTCGGCGCAGATGGATGTGATCGA.................................... 25 0 3 0.33 1 0 1 0 0 0 0
........................................................................................................................................................................................TGTTGGGGTCGGCGCGGAT................................................ 19 2 3 0.33 1 0 0 1 0 0 0
........................................................................................................................................................................................TGTTGGTGTCGGCGCAGATGG.............................................. 21 0 3 0.33 1 0 0 1 0 0 0
..............................................................................................................................................................................................TGTCGGCGCAGATGGATCTCATCGA.................................... 25 2 3 0.33 1 0 0 1 0 0 0
..........................................................................................................................................................................................TTGGTGTCGGCGCAGATGGA............................................. 20 0 3 0.33 1 0 1 0 0 0 0
.........................................................................................................................................................AAACTAATGGCAGTGACAAAACTCGGTC...................................................................... 28 0 3 0.33 1 0 1 0 0 0 0
...............................................................................................................................................................................................GTCGGCGCAGATGGATGTGATCGA.................................... 24 0 3 0.33 1 0 1 0 0 0 0
......................................................................................................................................................................TGACAAAACTCGGTCTTTTGTTGGTGT.......................................................... 27 0 3 0.33 1 0 1 0 0 0 0
.......................................................................................................................................................................GACAAAACTCGGTCTTTTGTTGGTG........................................................... 25 0 3 0.33 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................GAGATAATGACAAGGAAAAAGATAGGA.. 27 0 3 0.33 1 0 1 0 0 0 0
............................................................................................................................................................................................................GATGTGATCGAGAAGATAGAGA......................... 22 0 3 0.33 1 0 1 0 0 0 0
.............................................................................................................................................................TAATGGCAGTGACAAAACTCGGTC...................................................................... 24 0 3 0.33 1 0 1 0 0 0 0
........................................................................................................................................................................................TGTTGGTGTCGGCGCAGATGGA............................................. 22 0 3 0.33 1 0 1 0 0 0 0
..............................................................................................................................................................................CTCGGTATTTTGTTGGTGTCGGCGCA................................................... 26 1 3 0.33 1 0 0 0 1 0 0
..............................................................................................................................................................................................................TGTGATCGAGAAGATAGAGATAATGA................... 26 0 3 0.33 1 0 1 0 0 0 0
...............................................TCAAACGAACAATTACAATAAACGGTC................................................................................................................................................................................. 27 0 5 0.20 1 0 0 0 0 0 1
..................................................AACGAACAATTACAATAAACGGTCG................................................................................................................................................................................ 25 0 5 0.20 1 0 0 0 0 1 0
............................................GTTTCAAACGAACAATTACAATAAACGGT.................................................................................................................................................................................. 29 0 5 0.20 1 0 1 0 0 0 0
.TGATTGCGACGGACTCAGGGAAAT.................................................................................................................................................................................................................................. 24 3 18 0.17 3 3 0 0 0 0 0
......................................................................................................................................................................................................................................GACAAGGACAAAGATAGCA.. 19 2 16 0.06 1 0 0 1 0 0 0
.TGATTGCTAGGGACTTAGGGAAATAT................................................................................................................................................................................................................................ 26 0 16 0.06 1 0 1 0 0 0 0
.......................................................ACAATTACAATAAACGGTCGCTTG............................................................................................................................................................................ 24 0 18 0.06 1 0 1 0 0 0 0
........TAGGGACTTAGGGAAATATTTTG............................................................................................................................................................................................................................ 23 0 18 0.06 1 0 1 0 0 0 0
.......................................................ACAATTACAATAAACGGCCGCTTG............................................................................................................................................................................ 24 1 18 0.06 1 0 1 0 0 0 0

Anti-sense strand reads

AACTAACGATCCCTGAATCCCTTTATAAAACATAGGATCAAAGTCAAAGTTTGCTTGTTAATGTTATTTGCCAGCGAACACTAGATGTTTTATTTTTGGTTAATTAACATTATTAAATGACCTCGCAACCTCAGAAGATATCTGAGTTCCTCTTTTGATTACCGTCACTGTTTTGAGCCAGAAAACAACCACAGCCGCGTCTACCTACACTAGCTCTTCTATCTCTATTACTGTTCCTTTTTCTATCCTTT
***********************************************************************************************************************.......((((.((....((((..(((((................))))).....))))..)).))))....************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M055
female body
 GSM1528801
follicle cells		 V040
embryo
.....ACGATCCCTGAATCCCTTTATAAAACAT.......................................................................................................................................................................................................................... 28 0 14 0.64 9 9 0 0
.......GATCCCTGAATCCCTTTATAAAACAT.......................................................................................................................................................................................................................... 26 0 15 0.53 8 8 0 0
..........................AAAACATAGGATCAAAGTCAAAGTTTGC..................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0
.............................ACATAGGATCAAAGTCAAAGTTT....................................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0
............................................................ATGTTAGTTGCCAGCTACCA........................................................................................................................................................................... 20 3 7 0.43 3 0 3 0
......CGATCCCTGAATCCCTTTATAAAACAT.......................................................................................................................................................................................................................... 27 0 14 0.36 5 5 0 0
..............................................................................................................................................................................................ACAGCCGCGTCTACCTACACTAGCTCT.................................. 27 0 3 0.33 1 1 0 0
............................................................................................................................................................................................CCACAGCCGCGTCTACCTACACTAGCTT................................... 28 1 3 0.33 1 1 0 0
................................................................................................................................................................................................AGCCGCGTCTACCTACACTAGCTCTT................................. 26 0 3 0.33 1 0 1 0
....AACGATCCCTGAATCCCTTTATAAAACAT.......................................................................................................................................................................................................................... 29 0 14 0.29 4 4 0 0
...TAACGATCCCTGAATCCCTTTATAAAAC............................................................................................................................................................................................................................ 28 0 15 0.20 3 1 2 0
...........................................TCAAAGTTTGCTTGTTAATGTTAT........................................................................................................................................................................................ 24 0 5 0.20 1 1 0 0
..CTAACGATCCCTGAATCCCTTTGT................................................................................................................................................................................................................................. 24 1 17 0.18 3 0 3 0
.ACTAACGATCCCTGAATCCCT..................................................................................................................................................................................................................................... 21 0 17 0.18 3 1 2 0
.ACTAACGATCCCTGAATCCCTTTAT................................................................................................................................................................................................................................. 25 0 17 0.12 2 2 0 0
......................................................................................................................................................................................................................................CAGTGCCTTTTGCTATCCTT. 20 3 9 0.11 1 0 0 1
...............................................................................................................................................................................................GAGCCGATTCTACCTACACT........................................ 20 3 9 0.11 1 0 0 1
.....ACGATCCCTGAATCCCTTTATAAAACATG......................................................................................................................................................................................................................... 29 1 14 0.07 1 1 0 0
...TAACGATCCCTGAATCCCTTTATAAAA............................................................................................................................................................................................................................. 27 0 15 0.07 1 1 0 0
...TAACGATCCCTGAATCCCTTTATAAA.............................................................................................................................................................................................................................. 26 0 15 0.07 1 1 0 0
....AACGATCCCTGAATCCCTTTATAAAACA........................................................................................................................................................................................................................... 28 0 15 0.07 1 1 0 0
......CGATCCCTGAATCCCTTTATAAAACAC.......................................................................................................................................................................................................................... 27 1 15 0.07 1 1 0 0
...TAACGATCCCTGAATCCCTTTATAA............................................................................................................................................................................................................................... 25 0 15 0.07 1 1 0 0
....AACGATCGCTGAATCCCTTTATAAAACA........................................................................................................................................................................................................................... 28 1 15 0.07 1 1 0 0
.....ACGATCCCTGAATCCCTTTATAAAACA........................................................................................................................................................................................................................... 27 0 15 0.07 1 1 0 0
....AACGATCCCTCAATCCCTTTATAAAA............................................................................................................................................................................................................................. 26 1 16 0.06 1 1 0 0
.........TCCCTGAATCCCTTTATAAAACAT.......................................................................................................................................................................................................................... 24 0 16 0.06 1 1 0 0
....AACGATCCCTGAATCCCTTTATCAAA............................................................................................................................................................................................................................. 26 1 16 0.06 1 1 0 0
....AACGATCCCTGAATCCCTTTATAAAA............................................................................................................................................................................................................................. 26 0 16 0.06 1 1 0 0
...................................................................TTGCCAGCGAACTCTAGATGTTTTAT.............................................................................................................................................................. 26 1 16 0.06 1 0 1 0
..........CCCTGAATCCCTTTATAAAACATAAT....................................................................................................................................................................................................................... 26 2 16 0.06 1 1 0 0
.....................................................................GCCAGCGAACTCTAGATGTTTTAT.............................................................................................................................................................. 24 1 16 0.06 1 0 1 0
..........CCCTGAATCCCTTTATAAAACAT.......................................................................................................................................................................................................................... 23 0 16 0.06 1 1 0 0
..........CCCTGAATCCCTTTATAAAACATAAC....................................................................................................................................................................................................................... 26 2 16 0.06 1 1 0 0
.....ACGATCCCTGAATCCCTTTATAAAAC............................................................................................................................................................................................................................ 26 0 16 0.06 1 1 0 0
AACTAACGATCCCTGAATCCCTTTAT................................................................................................................................................................................................................................. 26 0 17 0.06 1 1 0 0
.ACTAACGATCCCTGAATCCCTT.................................................................................................................................................................................................................................... 22 0 17 0.06 1 1 0 0
..CTAACGATCCCTGAATCCCTTTAT................................................................................................................................................................................................................................. 24 0 17 0.06 1 1 0 0
..........CCCTGAATCCCTTTATAAAACA........................................................................................................................................................................................................................... 22 0 17 0.06 1 1 0 0
.AATAACGATCCCTGAATCCCT..................................................................................................................................................................................................................................... 21 1 17 0.06 1 0 1 0
AACTAACGATCCCTGAATCCCTTT................................................................................................................................................................................................................................... 24 0 17 0.06 1 1 0 0
.ACTCACGATCCCTGAATCCCT..................................................................................................................................................................................................................................... 21 1 17 0.06 1 0 1 0
.......GATCCCTGAATCCCTTTATA................................................................................................................................................................................................................................ 20 0 18 0.06 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4845:369831-370081 - der_1004 TTGATTGCTAGGGACTTAGGGAAATATTTTGTATCCTAGTTTCAGTTTCAAACGAACAATTACAATAAACGGTCGCTTGTGATCTACAAAATAAAAACCAATTAATTGTAATAATTTACTGGAGCGTTGGAGTCTTCTATAGACTCAAGGAGAAAACTAATGGCAGTGACAAAACTCGGTCTTTTGTTGGTGTCGGCG------------------CAGATGGA---TGTGAT------CGAGAAGATAGAG---------------------ATAATGACAAGGAAAAA------GATAGG---------AAA
droYak3 X:18791156-18791284 + TTGATTGCTAGGGACTTAGGGAAACATTTTGTACGCTAGATTTAGTTTCAAATGATAAATTGCAATAAACGGTCGCTTGCGATCTTCAAAATCAAA-TCGA-TAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTG------TATGTT---------TGA
droSec2 scaffold_443:75-198 + TTGATTGCTAGGGACTTAGGGAAACATTTTGTACGCTAGTTTTAGTTTCAAATGATAAATTTCAATAAACGGTCGCTTGCGATCTTCAAAATAAAA-TCAATTAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------CGC
droSim2 x:20297543-20297667 + TTGATTGCTAGGGACTTAGGGAAACATTTTGTATGTTAGTTTTAGTTTCAAATGATCAATTACAATAATCGGTCGCTTGCGATCTACAAAATAAAAACTAATTAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------CGC
dm3 chr3L:23437910-23438087 + TTGATTGCTAGGGACTTAGGGAAATATTTTGTATCTCAGCTTTAGTTTCAAATGAACAATTACAATAAACGGTCGCTTGCGATCTACAAAATAAAAATCAATAAACTGTAATTATTT----------------------------------------------------------ACT-------------------------------------------------------------TATATAAGTCGTATGAACTTTCGGAAACTTCTCTTGAAAGTACGTAAC-TT-------GGTCG---------TTT
droEug1 scf7180000409708:47893-48003 - A--------------------------------------------------------------------------------------------------------------------------------------------AAATCAAAAACAAAACAAAATGCAATGAGAAGTCCCGAGGTAGCGCCTGTGGCAGCG------------------TGGATGGG---CCCAAG------CGAGAAGAACGTG---------------------ATATAGACAAAGACAGG------GAGCGG---------AAA
droBia1 scf7180000299320:10453-10561 - CCAAA----------------------------------------------------------------------------------------------------------------------------------------AATATAAAGAGAAATATAAAGGAGGTGAGAAGTCCCGAGCAACCATTTGTGTCAGTG------------------GTGGCGCA---AAAAAT------AGGGAAGGTAGCGA---------------------------CAAAGACAAG------GAGCGG---------AAA
droTak1 scf7180000414226:619-711 + A--------------------------------------------------------------------------------------------------------------------------------------------AACTCAAGGAGAAAACCAAAGGCAGTGAAAAGTCCCGGACTAGCGCTG------------------------------GTGGA---AGTAAT------CGAGAAGAACGCGA---------------------------CAGAGACAAG------GAACGT---------AAA
droEle1 scf7180000490168:50345-50449 - A--------------------------------------------------------------------------------------------------------------------------------------------AACTCAAAGAGAACTCTAAGAGCAGTGAGAAGTCCCGAGCTATCACCG------GCG------------------GCGGAGGA---AGCCAT------CGAGAAGATCGCG---------------------ATAAGGACCGGGAACGG------GAGAGG---------AAA
droRho1 scf7180000763737:20982-21086 - A--------------------------------------------------------------------------------------------------------------------------------------------AATTAAAGGAGAGCACTAAACCCAGCGAGAAGTCCCGAGCTAGCTCCA------GCG------------------GAGGGGGG---ACCAAT------AGGGAAGAACGTG---------------------ATAAGGACAGGGATCGG------GAGCGG---------AAA
droFic1 scf7180000453168:46028-46138 + A--------------------------------------------------------------------------------------------------------------------------------------------AACTTAAAGAGAAAGCTAAAGGGATTGAAAAGTCTCGAGCTAGTGTTGCCGGAACTA------------------CGGGAGGA---TTCAAT------AGGGAAGAACGCG---------------------GCAAAGAGTGTGACAGG------GAGAGG---------AAA
droKik1 scf7180000299767:11221-11322 + A--------------------------------------------------------------------------------------------------------------------------------------------AATTAAAGGAAAAGACCAAAAGTGGTGAGAAATCCCGAAACAACAGTG------------------------------GGAACGGCAGTGGAAGCTGTCGCGAGGAACGCGA---------------------------AAGAGAAAGG------GAGCGG---------AAA
droAna3 scaffold_13230:399305-399394 - A--------------------------------------------------------------------------------------------------------------------------------------------AGCTTAAAGAAAGGTCCAAAAGTGTCGAAAAAACCCGTAGTAGTGCAGTAG------------------------------------GCAAT------AGAGAAGATCGCGA---------------------------TCGAGAAAGG------GAACGG---------AAA
droBip1 scf7180000393679:17087-17133 - G--------------------------------------------------------------------------------------------------------------------------------------------TGCTACAGGAA-------------------------------------------------------------------------------AT------AGAGAAGATCGTGA---------------------------CAGAGACAGG------GAACGA---------AAG
dp5 4_group4:6436250-6436360 + A--------------------------------------------------------------------------------------------------------------------------------------------AACTAAAAGAAAAAACGAAGAACAGTGAAAAGTCACGAAACAGTGGTGTTGGCGGCG------------------CTGGAGGA---TGCGGC------CGCGAAGACCGCG---------------------ATCGCGATAGGGATAGA------GATCGA---------AAA
droPer2 scaffold_16:425647-425757 - A--------------------------------------------------------------------------------------------------------------------------------------------AACTAAAAGAAAAAACGAAGAACAGTGAAAAGTCACGAAACAGTGGTGCTGGCGGCG------------------CTGGAGGA---TGCGGC------CGCGAAGACCGTG---------------------ATCGCGATAGGGATAGA------GATCGA---------AAA
droWil2 scf2_1100000004516:3729270-3729398 - A--------------------------------------------------------------------------------------------------------------------------------------------AGCTCAAAGAGAAGACAAAAAGTAGCGATAAATCACGGAATAGCGGCA------------------------------ACAAGGAGCATCGGAGTATTAACAAAGATCGAGATGGCCCA---------------CAGGAACGAGATCATGATCGCAAGCGTAATCGTGGTAGC
droVir3 scaffold_12963:2467898-2468008 - A--------------------------------------------------------------------------------------------------------------------------------------------AACTAAAGGACAAGACAAAGGGTAGTGACAAGTCACGCAACAGTGGCG------------------------------GAAGT---GGCAAT------CGCGAAGAGCGCGACCGAGAT------CGAG---ACAGGGATCGCGATCGG------GATCGT---------AAG
droMoj3 scaffold_6500:12630602-12630703 - A--------------------------------------------------------------------------------------------------------------------------------------------AGCTGAAGGATAAATCGAAGTCCAACGACAAGTCACGTAACAGTGGCG------------------------------GAAGCGCCAGTCGT------GGTGAGGATCGCG---------------------ATCGAGACAGAGATCGG------GATCGG---------GAT
droGri2 scaffold_15126:2540661-2540795 + A--------------------------------------------------------------------------------------------------------------------------------------------AACTCAAGGAGAAGACCAAGAGCAGCGATAAATCGCGCAATACTGGCGTTTCCAGCGGAACTGGAATTGCTGGTGGCAACAAC---AGCAAT------CGCGAGGATCGCGATCGTG---------------ATCGTGAACGAGATCGA------GATCGG---------AAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
TTGATTGCTAGGGACTTAGGGAAATATTTTGTATCCTAGTTTCAGTTTCAAACGAACAATTACAATAAACGGTCGCTTGTGATCTACAAAATAAAAACCAATTAATTGTAATAATTTACTGGAGCGTTGGAGTCTTCTATAGACTCAAGGAGAAAACTAATGGCAGTGACAAAACTCGGTCTTTTGTTGGTGTCGGCG------------------CAGATGGA---TGTGAT------CGAGAAGATAGAG---------------------ATAATGACAAGGAAAAA------GATAGG---------AAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................TGTAATAATTTACTGGAGCGTTGGAG......................................................................................................................................................................................26212.502540000021
...........................................................................................................................................................................................TGGTGTCGGCG------------------CAGATGGA---TGTGAT------...........................................................................2533.671100000011
.........................................................................................................TTGTAATAATTTACTGGAGCGTTGGAG......................................................................................................................................................................................2723.5071000006
............................................................TACAATAAACGGTCGCTTGTGATC......................................................................................................................................................................................................................................2423.0066000000
..........................................................................................................................................................................................TTGGTGTCGGCG------------------CAGATGGA---TGTGA..................................................................................2532.3370000007
..........................................................................................................TGTAATAATTTACTGGAGCGTTGGA.......................................................................................................................................................................................2522.0040000004
........................................................................................................................................................................................TGTTGGTGTCGGCG------------------CAGATGGA---TG.....................................................................................2431.6751000004
......................................................................................................................................................................................TTTGTTGGTGTCGGCG------------------CAGATGGA---.......................................................................................2431.3340000004
....................................................................................................................TACTGGAGCGTTGGAGTCTTCTATAGAC..........................................................................................................................................................................2821.0020000002
...............................................................................................................TAATTTACTGGAGCGTTGGAGTCT...................................................................................................................................................................................2421.0022000000
.........................................................................................................................................TATAGACTCAAGGAGAAAACTAATG........................................................................................................................................................2521.0022000000
...................................................................................................................................................................................................................................TGTGAT------CGAGAAGATAGAG---------------------ATAATGAC.................................2730.6722000000
................................................................................................................................................................................................TCGGCG------------------CAGATGGA---TGTGAT------CGAGAAGAT..................................................................2930.6720000002
.......................................................................................................................................................................................................................................................TAGAG---------------------ATAATGACAAGGAAAAA------GA................2430.6722000000
.........................ATTTTGTATCCTAGTTTCA..............................................................................................................................................................................................................................................................................1920.5010000010
.........................................................................................................................................TATAGACTCAAGGAGAAAACTAATGGC......................................................................................................................................................2720.5011000000
...............................................................AATAAACGGTCGCTTGTGATC......................................................................................................................................................................................................................................2120.5011000000
.......................................................................................................................TGGAGCGTTGGAGTCTTCTATAGACTC........................................................................................................................................................................2720.5010000100
.............................................................................................................................................GACTCAAGGAGAAAACTAATGGCAG....................................................................................................................................................2520.5011000000
.........................................................................................................................................TATAGACTCAAGGAGAAAACTAATGGCAG....................................................................................................................................................2920.5011000000
....................................................................................................ATTAATTGTAATAATTTACTGGAGC.............................................................................................................................................................................................2520.5010000001
................................ATCCTAGTTTCAGTTTCAAACGAACAAAA.............................................................................................................................................................................................................................................................2920.5011000000
......................................................................................................TAATTGTAATAATTTACTGGAGCGT...........................................................................................................................................................................................2520.5011000000
.........................................................................................................................................TATAGACTCAAGGAGAAAACTAATGG.......................................................................................................................................................2620.5011000000
...........................................................................................................................................TAGACTCAAGGAGAAAACTAATGGCAG....................................................................................................................................................2720.5011000000
....................................................................................................................TACTGGAGCGTTGGAGTCTTCTA...............................................................................................................................................................................2320.5011000000
..........................................................................................................TGTAATAATTTACTGGAGCGTTGG........................................................................................................................................................................................2420.5011000000
..........................................CAGTTTCAAACGAACAATTACAATA.......................................................................................................................................................................................................................................................2520.5011000000
....................................................................................................................TACTGGAGCGTTGGAGTCTTCTAT..............................................................................................................................................................................2420.5011000000
...............................................................................................................TAATTTACTGGAGCGTTGGAGTCTTC.................................................................................................................................................................................2620.5011000000
............................................................TACAATAAACGGTCGCTTGTGA........................................................................................................................................................................................................................................2220.5011000000
.....................................................................................................................................................................................................................................................GATAGAG---------------------ATAATGACAAGGAAAAA------GA................2630.3311000000
........................................................................................................................................................................................................................................T------CGAGAAGATAGAG---------------------ATAATGACAAGG.............................2630.3311000000
............................................................................................................................................................................................................................TGGA---TGTGAT------CGAGAAGATAGAG---------------------A........................................2430.3311000000
..............................................................................................................................................................................................TGTCGGCG------------------CAGATGGA---TGTGAT------CGA........................................................................2530.3311000000
........................................................................................................................................................................................TGTTGGTGTCGGCG------------------CAGATGG...........................................................................................2130.3310001000
..........................................................................................................................................................................................TTGGTGTCGGCG------------------CAGATGGA---.......................................................................................2030.3311000000
.........................................................................................................................................................AAACTAATGGCAGTGACAAAACTCGGTC.....................................................................................................................................2830.3311000000
...............................................................................................................................................................................................GTCGGCG------------------CAGATGGA---TGTGAT------CGA........................................................................2430.3311000000
......................................................................................................................................................................TGACAAAACTCGGTCTTTTGTTGGTGT.........................................................................................................................2730.3311000000
.......................................................................................................................................................................GACAAAACTCGGTCTTTTGTTGGTG..........................................................................................................................2530.3311000000
.........................................................................................................................................................................................................................................................GAG---------------------ATAATGACAAGGAAAAA------GATAGG---------A..2730.3311000000
..............................................................................................................................................................................................................................GA---TGTGAT------CGAGAAGATAGAG---------------------A........................................2230.3311000000
.............................................................................................................................................................TAATGGCAGTGACAAAACTCGGTC.....................................................................................................................................2430.3311000000
........................................................................................................................................................................................TGTTGGTGTCGGCG------------------CAGATGGA---.......................................................................................2230.3311000000
...................................................................................................................................................................................................................................TGTGAT------CGAGAAGATAGAG---------------------ATAATGA..................................2630.3311000000
...............................................TCAAACGAACAATTACAATAAACGGTC................................................................................................................................................................................................................................................2750.2010100000
..................................................AACGAACAATTACAATAAACGGTCG...............................................................................................................................................................................................................................................2550.2010000100
............................................GTTTCAAACGAACAATTACAATAAACGGT.................................................................................................................................................................................................................................................2950.2011000000
.TGATTGCTAGGGACTTAGGGAAATAT...............................................................................................................................................................................................................................................................................................26160.0611000000
.......................................................ACAATTACAATAAACGGTCGCTTG...........................................................................................................................................................................................................................................24180.0611000000
........TAGGGACTTAGGGAAATATTTTG...........................................................................................................................................................................................................................................................................................23180.0611000000
droYak3
TTGATTGCTAGGGACTTAGGGAAACATTTTGTACGCTAGATTTAGTTTCAAATGATAAATTGCAATAAACGGTCGCTTGCGATCTTCAAAATCAAA-TCGA-TAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTG------TATGTT---------TGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................AAA-TCGA-TAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTG------..................2711.00101000000000
.............................................................................................AAA-TCGA-TAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT..........................25130.38504100000000
TTGATTGCTAGGGACTTAGGGAA...................................................................................................................................................................................................................................................................................................23110.36422000000000
...............................TACGCTAGATTTAGTTTCAAATGAT..................................................................................................................................................................................................................................................................25130.23302100000000
....TTGCTAGGGACTTAGGGAAAC.................................................................................................................................................................................................................................................................................................21110.18200000020000
............................................................TGCAATAAACGGTCGCTTGCGATC......................................................................................................................................................................................................................................24120.17202000000000
.........................................................AATTGCAATAAACGGTCGCTTGCGA........................................................................................................................................................................................................................................25130.15202000000000
..............................................................CAATAAACGGTCGCTTGCGAT.......................................................................................................................................................................................................................................21130.15220000000000
...............................TACGCTAGATTTAGTTTCAAATGATA.................................................................................................................................................................................................................................................................26130.15202000000000
TTGATTGCTAGGGACTTAGGG.....................................................................................................................................................................................................................................................................................................21110.09100100000000
TTGATTGCTAGGGACTTAGGGAAA..................................................................................................................................................................................................................................................................................................24110.09101000000000
........TAGGGACTTAGGGAAACATTTTGTACGC......................................................................................................................................................................................................................................................................................28110.09101000000000
.TGATTGCTAGGGACTTAGGGAAACA................................................................................................................................................................................................................................................................................................25110.09101000000000
............GACTTAGGGAAACATTTTG...........................................................................................................................................................................................................................................................................................19110.09101000000000
TTGATTGCTAGGGACTTAGGGA....................................................................................................................................................................................................................................................................................................22110.09101000000000
TTGATTGCTAGGGACTTAGG......................................................................................................................................................................................................................................................................................................20110.09100100000000
............................................................TGCAATAAACGGTCGCTTGC..........................................................................................................................................................................................................................................20130.08101000000000
.............................................................................................AAA-TCGA-TAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT...........................24130.08101000000000
...............................TACGCTAGATTTAGTTTCAAATGA...................................................................................................................................................................................................................................................................24130.08101000000000
.............................................................................................AAA-TCGA-TAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC...........................24130.08101000000000
...............................................TCAAATGATAAATTGCAATAAACGGT.................................................................................................................................................................................................................................................26130.08100100000000
...............................................TCAAATGATAAATTGCAATAAACGGTC................................................................................................................................................................................................................................................27130.08100100000000
...........................TTTGTACGCTAGATTTAGTT...........................................................................................................................................................................................................................................................................20130.08101000000000
....................................................TGATAAATTGCAATAAACGGT.................................................................................................................................................................................................................................................21130.08101000000000
......................................................ATAAATTGCAATAAACGGTCG...............................................................................................................................................................................................................................................21130.08110000000000
..............................................................................................AA-TCGA-TAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT..........................24130.08101000000000
.....................................................GATAAATTGCAATAAACGGTCGCTTGC..........................................................................................................................................................................................................................................27130.08100100000000
droSec2
TTGATTGCTAGGGACTTAGGGAAACATTTTGTACGCTAGTTTTAGTTTCAAATGATAAATTTCAATAAACGGTCGCTTGCGATCTTCAAAATAAAA-TCAATTAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------CGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................CAATAAACGGTCGCTTGCGATCTT....................................................................................................................................................................................................................................24200.2555000
..............................................................CAATAAACGGTCGCTTGCGATC......................................................................................................................................................................................................................................22200.1022000
..........................TTTTGTACGCTAGTTTTAGTTTC.........................................................................................................................................................................................................................................................................23100.1011000
...............................................................AATAAACGGTCGCTTGCGATCTT....................................................................................................................................................................................................................................23200.1022000
........TAGGGACTTAGGGAAACATTTTGTACGC......................................................................................................................................................................................................................................................................................28140.0710100
..........GGGACTTAGGGAAACATTTTGTACGC......................................................................................................................................................................................................................................................................................26140.0711000
..............................................................CAATAAACGGTCGCTTGCGA........................................................................................................................................................................................................................................20200.0510010
droSim2
TTGATTGCTAGGGACTTAGGGAAACATTTTGTATGTTAGTTTTAGTTTCAAATGATCAATTACAATAATCGGTCGCTTGCGATCTACAAAATAAAAACTAATTAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------CGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................AATTACAATAATCGGTCGCTTGCGA........................................................................................................................................................................................................................................25246.00920000008201000000000
...............................................TCAAATGATCAATTACAATAATCGGT.................................................................................................................................................................................................................................................26226.00520000001602529000000
................TAGGGAAACATTTTGTATGTTAGT..................................................................................................................................................................................................................................................................................24411.2545000100000044000000
TTGATTGCTAGGGACTTAGGGAAA..................................................................................................................................................................................................................................................................................................242011.15223000000461462920000000
................TAGGGAAACATTTTGTATGTTAGTTT................................................................................................................................................................................................................................................................................26410.0040000206000032000000
.......................................................TCAATTACAATAATCGGTCGCTTGC..........................................................................................................................................................................................................................................2529.0018000000110700000000
................TAGGGAAACATTTTGTATGTTAGTT.................................................................................................................................................................................................................................................................................2547.7531000300001027000000
TTGATTGCTAGGGACTTAGGGAA...................................................................................................................................................................................................................................................................................................23205.6011200000025641931000000
.............................TGTATGTTAGTTTTAGTTTCAAATGA...................................................................................................................................................................................................................................................................2665.3332000000931370000000
.......................................................TCAATTACAATAATCGGTCGCTTG...........................................................................................................................................................................................................................................2424.50900020010600000000
.........................................................AATTACAATAATCGGTCGCTTGCGATC......................................................................................................................................................................................................................................2724.00800000070100000000
............................TTGTATGTTAGTTTTAGTTTCAAATGA...................................................................................................................................................................................................................................................................2763.6722000000221350000000
.........................................................AATTACAATAATCGGTCGCTTGCGAT.......................................................................................................................................................................................................................................2623.50700000040300000000
TTGATTGCTAGGGACTTAGGGA....................................................................................................................................................................................................................................................................................................22203.10620000001639610000000
TTGATTGCTAGGGACTTAGGGAAAC.................................................................................................................................................................................................................................................................................................25203.05610000001639420000000
..................................................................................................TAATTAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------C..2523.00600000050100000000
..............................................TTCAAATGATCAATTACAATAATCGGT.................................................................................................................................................................................................................................................2723.00600000000105000000
.......................................................TCAATTACAATAATCGGTCGCT.............................................................................................................................................................................................................................................2223.00600000040200000000
..................................................................................................TAATTAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------CGC2722.50500100020200000000
.........................................................AATTACAATAATCGGTCGCTTGC..........................................................................................................................................................................................................................................2322.00400000020100010000
............................................................TACAATAATCGGTCGCTTGCGATC......................................................................................................................................................................................................................................2422.00400000030100000000
...........................................................................................TAAAAACTAATTAACTGTAATTATT......................................................................................................................................................................................................2522.00400010000300000000
....TTGCTAGGGACTTAGGGAAACATT..............................................................................................................................................................................................................................................................................................24201.90380000001841501000000
TTGATTGCTAGGGACTTAGGGAAACA................................................................................................................................................................................................................................................................................................26201.70340000001018600000000
....TTGCTAGGGACTTAGGGAAACATTT.............................................................................................................................................................................................................................................................................................25201.6533000000195720000000
.......................................................TCAATTACAATAATCGGTCGCTT............................................................................................................................................................................................................................................2321.50300000030000000000
................TAGGGAAACATTTTGTATGTTAG...................................................................................................................................................................................................................................................................................2341.25500000000005000000
TTGATTGCTAGGGACTTAGGGAAACATT..............................................................................................................................................................................................................................................................................................28201.1523000000610520000000
.....................................................................................................TTAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------CGC24101.101100410031002000000
........................................TTTAGTTTCAAATGATCAATTACAATAAT.....................................................................................................................................................................................................................................................2921.00200010000001000000
.........................................................AATTACAATAATCGGTCGCTTGCG.........................................................................................................................................................................................................................................2421.00200000010100000000
.TGATTGCTAGGGACTTAG.......................................................................................................................................................................................................................................................................................................18201.0020000019000001000000
TTGATTGCTAGGGACTTAGGGAAACAT...............................................................................................................................................................................................................................................................................................27200.9018000000510300000000
.......................ACATTTTGTATGTTAGTTT................................................................................................................................................................................................................................................................................1940.75300000000003000000
................TAGGGAAACATTTTGTATGTTA....................................................................................................................................................................................................................................................................................2240.75300000000003000000
......................AACATTTTGTATGTTAGTTT................................................................................................................................................................................................................................................................................2040.75300000000003000000
.....TGCTAGGGACTTAGGGAAACATTT.............................................................................................................................................................................................................................................................................................24200.701400000063500000000
.TGATTGCTAGGGACTTAGGGAAACATT..............................................................................................................................................................................................................................................................................................27200.651300010005520000000
TTGATTGCTAGGGACTTAGGG.....................................................................................................................................................................................................................................................................................................21200.651300000048100000000
.................................................AAATGATCAATTACAATAATCGG..................................................................................................................................................................................................................................................2320.50100000010000000000
..........................................TAGTTTCAAATGATCAATTACAATAAT.....................................................................................................................................................................................................................................................2720.50100010000000000000
.......................................................TCAATTACAATAATCGGTC................................................................................................................................................................................................................................................1920.50100100000000000000
.................................................AAATGATCAATTACAATAATCGGT.................................................................................................................................................................................................................................................2420.50100000000100000000
.......................................................TCAATTACAATAATCGGTCGCTTGCGATC......................................................................................................................................................................................................................................2920.50100000010000000000
......................AACATTTTGTATGTTAGT..................................................................................................................................................................................................................................................................................1840.50200000000002000000
............................................................TACAATAATCGGTCGCTTGCGATCTA....................................................................................................................................................................................................................................2620.50100000000001000000
.............................................................................TGCGATCTACAAAATAAAAACTAAT....................................................................................................................................................................................................................2520.50100000001000000000
.......................................................TCAATTACAATAATCGGTCGCTTT...........................................................................................................................................................................................................................................2420.50100010000000000000
..................................................................................TCTACAAAATAAAAACTAATTAACT...............................................................................................................................................................................................................2520.50100000001000000000
...............................................................AATAATCGGTCGCTTGCGATCTAC...................................................................................................................................................................................................................................2420.50100000000001000000
.........................................................AATTACAATAATCGGTCGCTTGCGAA.......................................................................................................................................................................................................................................2620.50100000010000000000
.............................................................................TGCGATCTACAAAATAAAAACTAATTAAC................................................................................................................................................................................................................2920.50100000000010000000
..........................................................ATTACAATAATCGGTCGCTTGCGA........................................................................................................................................................................................................................................2420.50100000000001000000
................TAGGGAAACATTTTGTATGTTAGTGG................................................................................................................................................................................................................................................................................2640.50200000000002000000
..................................................................................TCTACAAAATAAAAACTAATTAACTGTAAT..........................................................................................................................................................................................................3020.50100000000100000000
............................................................................TTGCGATCTACAAAATAAAAACTAA.....................................................................................................................................................................................................................2520.50100000000100000000
..............................................TTCAAATGATCAATTACAATAATCGG..................................................................................................................................................................................................................................................2620.50100010000000000000
................TAGGGAAACATTTTGTATGTT.....................................................................................................................................................................................................................................................................................2140.50200000000002000000
.........................................................................CGCTTGCGATCTACAAAATAAAAACTA......................................................................................................................................................................................................................2720.50100010000000000000
............................................................................TTGCGATCTACAAAATAAAAACTAAT....................................................................................................................................................................................................................2620.50100000000100000000
...............................................................AATAATCGGTCGCTTGCGATCTACA..................................................................................................................................................................................................................................2520.50100000000001000000
..........................................................................GCTTGCGATCTACAAAATAAAAACTA......................................................................................................................................................................................................................2620.50100000000100000000
.........................................................AATTACAATAATCGGT.................................................................................................................................................................................................................................................1620.50100000000001000000
.......................................................TCAATTACAATAATCGGTCGCTTC...........................................................................................................................................................................................................................................2420.50100000010000000000
............................................................................TTGCGATCTACAAAATAAAAACTAATTAACT...............................................................................................................................................................................................................3120.50100000010000000000
................................................CAAATGATCAATTACAATAATCGGT.................................................................................................................................................................................................................................................2520.50100000010000000000
............................................................TACAATAATCGGTCGCTTGCGA........................................................................................................................................................................................................................................2220.50100000010000000000
.TGATTGCTAGGGACTTAGGGAAACAT...............................................................................................................................................................................................................................................................................................26200.45900000013401000000
.TGATTGCTAGGGACTTAGGGAAACA................................................................................................................................................................................................................................................................................................25200.45900000031410000000
.....TGCTAGGGACTTAGGGAAACATT..............................................................................................................................................................................................................................................................................................23200.40800000052100000000
.TGATTGCTAGGGACTTAGGGAAACATTT.............................................................................................................................................................................................................................................................................................28200.35700000014200000000
........TAGGGACTTAGGGAAACATTTTGTA.........................................................................................................................................................................................................................................................................................25200.35700100013101000000
....TTGCTAGGGACTTAGGGAAACAT...............................................................................................................................................................................................................................................................................................23200.35700000010411000000
...........................TTTGTATGTTAGTTTTAGTTTCAAATGA...................................................................................................................................................................................................................................................................2860.33200000000020000000
...............................TATGTTAGTTTTAGTTTCAAATGA...................................................................................................................................................................................................................................................................2460.33200000000200000000
..........................TTTTGTATGTTAGTTTTAGTT...........................................................................................................................................................................................................................................................................2160.33200000000200000000
TTGATTGCTAGGGACTTAGGGAAAA.................................................................................................................................................................................................................................................................................................25200.30600000013200000000
TTGATTGCTAGGGACTTAGGGAAT..................................................................................................................................................................................................................................................................................................24200.30600000013200000000
TTGATTGCTAGGGACTTAGGGAT...................................................................................................................................................................................................................................................................................................23200.30600000030300000000
....................................................................................................ATTAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------CGC25100.30300100010100000000
..........................................TAGTTTCAAATGATCAATTACAATA.......................................................................................................................................................................................................................................................2570.29200010001000000000
........................................TTTAGTTTCAAATGATCAATTACAA.........................................................................................................................................................................................................................................................2570.29200000020000000000
................TAGGGAAACATTTTGTATGTTAGTTTT...............................................................................................................................................................................................................................................................................2740.25100000000001000000
.......................ACATTTTGTATGTTAGTT.................................................................................................................................................................................................................................................................................1840.25100000000001000000
TTGATTGCTAGGGACTTAGG......................................................................................................................................................................................................................................................................................................20200.25500000004100000000
................TAGGGAAACATTTTGTATGTTAGTTC................................................................................................................................................................................................................................................................................2640.25100000000001000000
.......................................................................................................AACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------CGC22160.25400000004000000000
......................AACATTTTGTATGTTAGTTTT...............................................................................................................................................................................................................................................................................2140.25100000000001000000
.................AGGGAAACATTTTGTATGTTAGTTT................................................................................................................................................................................................................................................................................2540.25100000000001000000
...............TTAGGGAAACATTTTGTATGTTA....................................................................................................................................................................................................................................................................................2340.25100000000001000000
................TAGGGAAACATTTTGTATGTTAGTC.................................................................................................................................................................................................................................................................................2540.25100000000001000000
TTGATTGCTAGGGACTTAGGGAAC..................................................................................................................................................................................................................................................................................................24200.25500000023000000000
.TGATTGCTAGGGACTTAGGGAAAC.................................................................................................................................................................................................................................................................................................24200.25500000013010000000
.......................ACATTTTGTATGTTAGT..................................................................................................................................................................................................................................................................................1740.25100000000001000000
................TAGGGAAACATTTTGTATGTTAGTG.................................................................................................................................................................................................................................................................................2540.25100000000001000000
TTGATTGCTAGGGACT..........................................................................................................................................................................................................................................................................................................16200.20400000000004000000
...................................................................................................AATTAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------C..24100.20200010010000000000
..........................................................................GCTTGCGATCTACAAAATAAAAAC........................................................................................................................................................................................................................2450.20100000000001000000
................TAGGGAAACATTTTGTAT........................................................................................................................................................................................................................................................................................18110.18200000000002000000
............................TTGTATGTTAGTTTTAGTTTCAAATGAT..................................................................................................................................................................................................................................................................2860.17100000000010000000
..........................TTTTGTATGTTAGTTTTAGTTTCA........................................................................................................................................................................................................................................................................2460.17100000000100000000
............................TTGTATGTTAGTTTTAGTTTCAAATGT...................................................................................................................................................................................................................................................................2760.17100000010000000000
...........................TTTGTATGTTAGTTTTAGTTTCAAATGAT..................................................................................................................................................................................................................................................................2960.17100000000100000000
..........................TTTTGTATGTTAGTTTTAGAA...........................................................................................................................................................................................................................................................................2160.17100000010000000000
.............................TGTATGTTAGTTTTAGTTTCAAATGATCA................................................................................................................................................................................................................................................................2960.17100000001000000000
.................................TGTTAGTTTTAGTTTCAAATGA...................................................................................................................................................................................................................................................................2260.17100000000100000000
............................TTGTATGTTAGTTTTAGTTTCAAA......................................................................................................................................................................................................................................................................2460.17100000000100000000
.................................TGTTAGTTTTAGTTTCAAATGATCAA...............................................................................................................................................................................................................................................................2660.17100000000100000000
...........................TTTGTATGTTAGTTTTAGTTTCAAA......................................................................................................................................................................................................................................................................2560.17100000000100000000
......................................................................................................TAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------CGC23130.15200000000200000000
................TAGGGAAACATTTTGTA.........................................................................................................................................................................................................................................................................................17200.15300000000003000000
....TTGCTAGGGACTTAGGGA....................................................................................................................................................................................................................................................................................................18200.15300000020001000000
...........................................AGTTTCAAATGATCAATTAC...........................................................................................................................................................................................................................................................2070.14100000000001000000
.........................................TTAGTTTCAAATGATCAATTACAATA.......................................................................................................................................................................................................................................................2670.14100000010000000000
.........................................TTAGTTTCAAATGATCA................................................................................................................................................................................................................................................................17100.10100000000001000000
...................................................................................................AATTAACTGTAATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGG---------CGC26100.10100000010000000000
TTGATTGCTAGGGACTTAGGGAAACATTT.............................................................................................................................................................................................................................................................................................29200.10200000011000000000
.....TGCTAGGGACTTAGGGAA...................................................................................................................................................................................................................................................................................................18200.10200000000200000000
TTGATTGCTAGGGACTTAG.......................................................................................................................................................................................................................................................................................................19200.10200000000200000000
....TTGCTAGGGACTTAGGGAA...................................................................................................................................................................................................................................................................................................19200.10200000010001000000
.....TGCTAGGGACTTAGGGAAACATTTTG...........................................................................................................................................................................................................................................................................................26200.10200000000101000000
....TTGCTAGGGACTTAGGGAAACA................................................................................................................................................................................................................................................................................................22200.10200000020000000000
....TTGCTAGGGACTTAGGGAAA..................................................................................................................................................................................................................................................................................................20200.10200000010100000000
................TAGGGAAACATTTTG...........................................................................................................................................................................................................................................................................................15200.05100000000001000000
..............CTTAGGGAAACATTTT............................................................................................................................................................................................................................................................................................16200.05100000000001000000
.TGATTGCTAGGGACTTAGGGAAACATG..............................................................................................................................................................................................................................................................................................27200.05100000010000000000
TTGATTGCTAGGGACTTAGGT.....................................................................................................................................................................................................................................................................................................21200.05100000000001000000
....TTGCTAGGGACTTAGGGAAACATA..............................................................................................................................................................................................................................................................................................24200.05100000010000000000
................TAGGGAAACATTTTGT..........................................................................................................................................................................................................................................................................................16200.05100000000001000000
TTGATTGCTAGGGACTTAGGA.....................................................................................................................................................................................................................................................................................................21200.05100000001000000000
TTGATTGCTAGGGACA..........................................................................................................................................................................................................................................................................................................16200.05100000001000000000
............GACTTAGGGAAACATTTT............................................................................................................................................................................................................................................................................................18200.05100000000001000000
....TTGCTAGGGACTTAGGGAAACATTTT............................................................................................................................................................................................................................................................................................26200.05100000001000000000
.TGATTGCTAGGGACTTAGGGA....................................................................................................................................................................................................................................................................................................21200.05100000010000000000
....TTGCTAGGGACTTAGGGAAAC.................................................................................................................................................................................................................................................................................................21200.05100000010000000000
.....TGCTAGGGACTTAGGGAAACATTTT............................................................................................................................................................................................................................................................................................25200.05100000010000000000
........TAGGGACTTAGGGAAACA................................................................................................................................................................................................................................................................................................18200.05100000000001000000
TTGATTGCTAGGGACTTAGGGAAACT................................................................................................................................................................................................................................................................................................26200.05100000010000000000
dm3
TTGATTGCTAGGGACTTAGGGAAATATTTTGTATCTCAGCTTTAGTTTCAAATGAACAATTACAATAAACGGTCGCTTGCGATCTACAAAATAAAAATCAATAAACTGTAATTATTT----------------------------------------------------------ACT-------------------------------------------------------------TATATAAGTCGTATGAACTTTCGGAAACTTCTCTTGAAAGTACGTAAC-TT-------GGTCG---------TTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
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Head		V138
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Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droEug1
A--------------------------------------------------------------------------------------------------------------------------------------------AAATCAAAAACAAAACAAAATGCAATGAGAAGTCCCGAGGTAGCGCCTGTGGCAGCG------------------TGGATGGG---CCCAAG------CGAGAAGAACGTG---------------------ATATAGACAAAGACAGG------GAGCGG---------AAASizeHit CountTotal NormTotal
No Reads
droBia1
CCAAA----------------------------------------------------------------------------------------------------------------------------------------AATATAAAGAGAAATATAAAGGAGGTGAGAAGTCCCGAGCAACCATTTGTGTCAGTG------------------GTGGCGCA---AAAAAT------AGGGAAGGTAGCGA---------------------------CAAAGACAAG------GAGCGG---------AAASizeHit CountTotal NormTotal
No Reads
droTak1
A--------------------------------------------------------------------------------------------------------------------------------------------AACTCAAGGAGAAAACCAAAGGCAGTGAAAAGTCCCGGACTAGCGCTG------------------------------GTGGA---AGTAAT------CGAGAAGAACGCGA---------------------------CAGAGACAAG------GAACGT---------AAASizeHit CountTotal NormTotal
No Reads
droEle1
A--------------------------------------------------------------------------------------------------------------------------------------------AACTCAAAGAGAACTCTAAGAGCAGTGAGAAGTCCCGAGCTATCACCG------GCG------------------GCGGAGGA---AGCCAT------CGAGAAGATCGCG---------------------ATAAGGACCGGGAACGG------GAGAGG---------AAASizeHit CountTotal NormTotal
No Reads
droRho1
A--------------------------------------------------------------------------------------------------------------------------------------------AATTAAAGGAGAGCACTAAACCCAGCGAGAAGTCCCGAGCTAGCTCCA------GCG------------------GAGGGGGG---ACCAAT------AGGGAAGAACGTG---------------------ATAAGGACAGGGATCGG------GAGCGG---------AAASizeHit CountTotal NormTotal
No Reads
droFic1
A--------------------------------------------------------------------------------------------------------------------------------------------AACTTAAAGAGAAAGCTAAAGGGATTGAAAAGTCTCGAGCTAGTGTTGCCGGAACTA------------------CGGGAGGA---TTCAAT------AGGGAAGAACGCG---------------------GCAAAGAGTGTGACAGG------GAGAGG---------AAASizeHit CountTotal NormTotal
No Reads
droKik1
A--------------------------------------------------------------------------------------------------------------------------------------------AATTAAAGGAAAAGACCAAAAGTGGTGAGAAATCCCGAAACAACAGTG------------------------------GGAACGGCAGTGGAAGCTGTCGCGAGGAACGCGA---------------------------AAGAGAAAGG------GAGCGG---------AAASizeHit CountTotal NormTotal
No Reads
droAna3
A--------------------------------------------------------------------------------------------------------------------------------------------AGCTTAAAGAAAGGTCCAAAAGTGTCGAAAAAACCCGTAGTAGTGCAGTAG------------------------------------GCAAT------AGAGAAGATCGCGA---------------------------TCGAGAAAGG------GAACGG---------AAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................GGTCCAAAAGTGTCGAAAA..............................................................................................................................................1912.002000002
.......................................................................................................................................................................................GTGCAGTAG------------------------------------GCAAT------AGAGAAG....................................................................2111.001000010
........................................................................................................................................................................................TGCAGTAG------------------------------------GCAAT------AGAGAAGATCGCGA---------------------------T.................................2811.001000010
...................................................................................................................................................AAGAAAGGTCCAAAAGTGTCGAAA...............................................................................................................................................2411.001000001
....................................................................................................................................................................................GTAGTGCAGTAG------------------------------------GCAAT------AGA........................................................................2011.001010000
.......................................................................................................................................................................................GTGCAGTAG------------------------------------GCAAT------AGAGAAGAT..................................................................2311.001000010
.................................................................................................................................................................................GTAGTAGTGCAGTAG------------------------------------GCAAT------...........................................................................2011.001100000
...............................................................................................................................................................AAAGTGTCGAAAAAACCCGTA......................................................................................................................................2111.001010000
droBip1
G--------------------------------------------------------------------------------------------------------------------------------------------TGCTACAGGAA-------------------------------------------------------------------------------AT------AGAGAAGATCGTGA---------------------------CAGAGACAGG------GAACGA---------AAGSizeHit CountTotal NormTotal
No Reads
dp5
A--------------------------------------------------------------------------------------------------------------------------------------------AACTAAAAGAAAAAACGAAGAACAGTGAAAAGTCACGAAACAGTGGTGTTGGCGGCG------------------CTGGAGGA---TGCGGC------CGCGAAGACCGCG---------------------ATCGCGATAGGGATAGA------GATCGA---------AAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................AAAGTCACGAAACAGTGGT..............................................................................................................................1911.0010100000000
..................................................................................................................................................................................................GGCG------------------CTGGAGGA---TGCGGC------CG.........................................................................2011.0010100000000
droPer2
A--------------------------------------------------------------------------------------------------------------------------------------------AACTAAAAGAAAAAACGAAGAACAGTGAAAAGTCACGAAACAGTGGTGCTGGCGGCG------------------CTGGAGGA---TGCGGC------CGCGAAGACCGTG---------------------ATCGCGATAGGGATAGA------GATCGA---------AAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................GAAACAGTGGTGCTGGCGGCG------------------..................................................................................................2111.001000001
droWil2
A--------------------------------------------------------------------------------------------------------------------------------------------AGCTCAAAGAGAAGACAAAAAGTAGCGATAAATCACGGAATAGCGGCA------------------------------ACAAGGAGCATCGGAGTATTAACAAAGATCGAGATGGCCCA---------------CAGGAACGAGATCATGATCGCAAGCGTAATCGTGGTAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................AAAGATCGAGATGGCCCA---------------CAGGAAC................................2512.00220000
.................................................................................................................................................................AGTAGCGATAAATCACGGAATAGC.................................................................................................................................2411.00100010
..........................................................................................................................................................................AAATCACGGAATAGCGGCA------------------------------A..............................................................................................2011.00101000
............................................................................................................................................................................................A------------------------------ACAAGGAGCATCGGAGTATTAACA.......................................................................2511.00100100
...............................................................................................................................................................................................................................................AACAAAGATCGAGATGGCCCA---------------.......................................2111.00101000
droVir3
A--------------------------------------------------------------------------------------------------------------------------------------------AACTAAAGGACAAGACAAAGGGTAGTGACAAGTCACGCAACAGTGGCG------------------------------GAAGT---GGCAAT------CGCGAAGAGCGCGACCGAGAT------CGAG---ACAGGGATCGCGATCGG------GATCGT---------AAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................G---ACAGGGATCGCGATCGG------GAT...............2111.001000000010000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GACCGAGAT------CGAG---ACAGGGAT.................................2111.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
A--------------------------------------------------------------------------------------------------------------------------------------------AGCTGAAGGATAAATCGAAGTCCAACGACAAGTCACGTAACAGTGGCG------------------------------GAAGCGCCAGTCGT------GGTGAGGATCGCG---------------------ATCGAGACAGAGATCGG------GATCGG---------GATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
A--------------------------------------------------------------------------------------------------------------------------------------------AACTCAAGGAGAAGACCAAGAGCAGCGATAAATCGCGCAATACTGGCGTTTCCAGCGGAACTGGAATTGCTGGTGGCAACAAC---AGCAAT------CGCGAGGATCGCGATCGTG---------------ATCGTGAACGAGATCGA------GATCGG---------AAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................GCGGAACTGGAATTGCTGGTGGCAACA............................................................................................2711.00101

Generated: 05/17/2015 at 11:18 PM