ID:

der-mir-9a

 Coordinate:

scaffold_4784:19355677-19355754 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

5pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.0 -33.4 -33.4

Flybase annnotation

pre_miRNA [Dere\mir-9a-RM]; utr5 [utr5_plus_8673]; miRNA [Dere\miR-9a-RA]

No Repeatable elements found

Sense Strand Reads

CCTTCCCTTTCAACCATCTGCAGTGTTACATAACCGACTCTATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAGCGAAACAGCCAAAAACAAAGCCCACGTTGCGTATACTTAA

********************************************((((..(((((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))).)))).)))).******************************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 V108

head

 V107

male body		 V040

embryo

 M057

embryo

 V060

head

 GSM1528801

follicle cells
...........................................................TCTTTGGTTATCTAGCTGTATG................................................................................................. 22 0 1 235258.00 235258 50634 73233 62222 26387 14529 8240 13
...........................................................TCTTTGGTTATCTAGCTGTATGA................................................................................................ 23 0 1 145370.00 145370 58277 18481 28411 11794 24265 4047 95
...........................................................TCTTTGGTTATCTAGCTGTAT.................................................................................................. 21 0 1 49365.00 49365 27227 8029 8183 702 1612 3607 5
..................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................... 21 0 1 7174.00 7174 682 3814 1695 268 420 295 0
..................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................... 22 0 1 7095.00 7095 1520 3254 901 972 272 176 0
...........................................................TCTTTGGTTATCTAGCTGTATT................................................................................................. 22 1 1 6564.00 6564 344 344 87 5168 9 612 0
...........................................................TCTTTGGTTATCTAGCTGTATGT................................................................................................ 23 1 1 4531.00 4531 2372 715 1008 64 204 163 5
............................................................CTTTGGTTATCTAGCTGTATGA................................................................................................ 22 0 1 4385.00 4385 4278 39 27 8 22 1 10
............................................................CTTTGGTTATCTAGCTGTATG................................................................................................. 21 0 1 3455.00 3455 3280 101 43 17 9 5 0
...........................................................TCTTTGGTTATCTAGCTGTA................................................................................................... 20 0 1 3216.00 3216 1175 365 596 31 927 122 0
...........................................................TCTTTGGTTATCTAGCTGTATTA................................................................................................ 23 1 1 2399.00 2399 48 142 13 1994 5 197 0
.................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................... 22 0 1 2257.00 2257 303 837 666 157 234 60 0
...........................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................... 24 1 1 2152.00 2152 768 517 583 82 106 84 12
............................................................CTTTGGTTATCTAGCTGTAT.................................................................................................. 20 0 1 1881.00 1881 1860 15 5 1 0 0 0
.................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................... 23 0 1 1623.00 1623 420 650 254 201 68 30 0
...........................................................TCTTTGGTTATCTAGCTTTATG................................................................................................. 22 1 1 1475.00 1475 29 137 36 1028 16 229 0
...........................................................TCTTTGGTTATCTATCTGTATG................................................................................................. 22 1 1 1451.00 1451 247 378 41 662 7 116 0
...........................................................TGTTTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 1073.00 1073 105 1 55 7 905 0 0
...........................................................TCTTTTGTTATCTAGCTGTATG................................................................................................. 22 1 1 943.00 943 74 660 52 88 64 5 0
...........................................................TGTTTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 856.00 856 95 15 140 9 595 2 0
...........................................................TCTTTGGTTATCTATCTGTATGA................................................................................................ 23 1 1 818.00 818 330 84 28 295 15 66 0
...........................................................TCCTTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 784.00 784 29 29 17 14 691 4 0
..................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................... 23 0 1 710.00 710 65 405 78 148 6 8 0
...........................................................TCCTTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 707.00 707 19 132 33 48 466 9 0
...........................................................TCTTTGGTTATCTAGCTTTATT................................................................................................. 22 2 1 700.00 700 0 3 0 626 0 71 0
...........................................................TATTTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 613.00 613 2 539 34 28 2 8 0
...........................................................TCTTTGGTTATCTAGCTTTATGA................................................................................................ 23 1 1 579.00 579 32 47 24 379 22 75 0
...........................................................TCTTTGGTTATCTAGCTGT.................................................................................................... 19 0 1 573.00 573 249 107 180 11 1 25 0
...........................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................... 24 1 1 547.00 547 205 130 138 10 30 29 5
.............................................................TTTGGTTATCTAGCTGTATG................................................................................................. 20 0 1 509.00 509 165 105 167 36 9 27 0
...........................................................TCTTTGGTTATCTAGATGTATG................................................................................................. 22 1 1 487.00 487 1 407 20 34 1 24 0
...........................................................TCTTTGGTTATCTATCTGTATT................................................................................................. 22 2 1 469.00 469 2 1 0 414 0 52 0
...........................................................TCTTTGGCTATCTAGCTGTATG................................................................................................. 22 1 1 466.00 466 202 93 50 69 40 12 0
...........................................................TCTTTGTTTATCTAGCTGTATG................................................................................................. 22 1 1 453.00 453 103 145 49 93 59 4 0
...........................................................TCTTTTGTTATCTAGCTGTATGA................................................................................................ 23 1 1 412.00 412 75 133 23 47 132 1 1
...........................................................TCTTTGGTTATCTAGCTGTAA.................................................................................................. 21 1 1 397.00 397 138 150 86 2 1 20 0
...........................................................TCTTTGGTTATCTAGCTGTATGC................................................................................................ 23 1 1 397.00 397 26 209 22 52 59 29 0
...........................................................TCTTTGGTTATCTAGCTGTCTG................................................................................................. 22 1 1 390.00 390 4 38 27 226 0 95 0
...........................................................TCTTTGGTTATATAGCTGTATG................................................................................................. 22 1 1 383.00 383 6 308 20 23 18 8 0
.............................................................TTTGGTTATCTAGCTGTATGA................................................................................................ 21 0 1 357.00 357 208 31 71 21 16 10 0
...........................................................TCTTTGGCTATCTAGCTGTATGA................................................................................................ 23 1 1 347.00 347 222 19 12 32 57 4 1
...........................................................TCTCTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 346.00 346 40 16 19 9 260 2 0
...........................................................TCTTTGGTTATCTAGCTGTATGAAA.............................................................................................. 25 2 1 338.00 338 62 149 101 10 1 15 0
...........................................................TCTTTGGTTATCTAGCTGTATGG................................................................................................ 23 1 1 319.00 319 77 155 22 30 28 7 0
...........................................................TCTTTGGTTATCTAGCTATG................................................................................................... 20 2 1 315.00 315 67 163 78 0 7 0 0
...........................................................CCTTTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 315.00 315 89 88 57 30 47 4 0
...........................................................TCTTTGGTTATCTATCTGTAT.................................................................................................. 21 1 1 311.00 311 137 62 7 22 3 80 0
...........................................................TCTGTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 300.00 300 7 9 4 6 274 0 0
...........................................................TCTTTGTTTATCTAGCTGTATGA................................................................................................ 23 1 1 299.00 299 117 31 19 44 83 5 0
...........................................................TCTTTGGTTATCTAGCTGTAGGA................................................................................................ 23 1 1 296.00 296 277 1 2 1 15 0 0
...........................................................TCTCTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 296.00 296 21 46 44 22 159 4 0
...........................................................TCTTTGGTTATCTAGCTGTAGG................................................................................................. 22 1 1 292.00 292 254 4 2 13 15 4 0
...........................................................TCTTTGGTTATCTAGCTGTATA................................................................................................. 22 1 1 291.00 291 83 75 53 33 33 14 0
...........................................................TTTTTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 275.00 275 67 13 17 2 173 3 0
..................................................................................................TAAAGCTAGCTTACCGAAGT............................................................ 20 0 1 272.00 272 17 157 63 2 25 8 0
...........................................................TCTGTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 267.00 267 6 39 3 24 191 4 0
...........................................................TTTTTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 263.00 263 60 40 31 13 119 0 0
...........................................................TCTTTGGGTATCTAGCTGTATG................................................................................................. 22 1 1 252.00 252 22 12 63 118 12 25 0
...........................................................GCTTTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 246.00 246 66 34 76 30 40 0 0
...........................................................CCTTTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 240.00 240 95 28 32 14 65 6 0
...........................................................TCTTTGGTTATCTCGCTGTATG................................................................................................. 22 1 1 227.00 227 5 66 51 83 0 21 1
...........................................................TCTTTGGTTATCTAGCTGGATG................................................................................................. 22 1 1 225.00 225 114 24 9 62 5 11 0
...........................................................TCTTTGGTTATCTAGCTGTAC.................................................................................................. 21 1 1 222.00 222 10 8 7 0 194 3 0
...........................................................TCTTTGGTTATCTAGCCGTATG................................................................................................. 22 1 1 220.00 220 18 95 49 47 5 6 0
...........................................................TCGTTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 219.00 219 36 48 94 32 2 7 0
...........................................................TCTTTGGTTATCTAGCTGCATG................................................................................................. 22 1 1 218.00 218 21 93 38 48 8 10 0
...........................................................GCTTTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 212.00 212 83 11 36 10 72 0 0
...........................................................TCTTTGGTTATCTAGCTTTATTA................................................................................................ 23 2 1 206.00 206 1 0 0 186 0 19 0
...........................................................TCTTTGGTTATTTAGCTGTATG................................................................................................. 22 1 1 203.00 203 132 32 20 10 4 5 0
...........................................................TCTTTGGTTATCTAGCTGTGTG................................................................................................. 22 1 1 190.00 190 37 50 21 71 3 8 0
.................................................................................................ATAAAGCTAGCTTACCGAAG............................................................. 20 0 1 190.00 190 12 142 34 1 1 0 0
...........................................................TCTTTGGTTATCTAGCTGGATGA................................................................................................ 23 1 1 188.00 188 139 2 6 29 8 4 0
...........................................................TCTTTGGTTACCTAGCTGTATG................................................................................................. 22 1 1 186.00 186 20 88 35 30 7 6 0
...........................................................TCTTCGGTTATCTAGCTGTATG................................................................................................. 22 1 1 185.00 185 50 70 27 21 13 4 0
...........................................................TCTTTGGTTATCTATCTGTATTA................................................................................................ 23 2 1 184.00 184 1 2 0 162 0 19 0
...........................................................TCTTTGGTTATCTAGCTTTAT.................................................................................................. 21 1 1 181.00 181 13 13 3 34 1 117 0
.................................................................................................ATAAAGCTAGCTTACCGAAGT............................................................ 21 0 1 180.00 180 16 69 79 3 7 6 0
...........................................................TCTTTGGTTATCTAGATGTATGA................................................................................................ 23 1 1 179.00 179 6 129 10 22 1 10 1
...........................................................TATTTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 178.00 178 4 144 13 10 2 5 0
...........................................................TCTTTGGTTATCTAGTTGTATGA................................................................................................ 23 1 1 178.00 178 75 9 11 9 69 5 0
............................................................CTTTGGTTATCTAGCTGTATGT................................................................................................ 22 1 1 177.00 177 175 2 0 0 0 0 0
...........................................................TCTTTGGTTATCTAGCTGTATC................................................................................................. 22 1 1 175.00 175 22 32 25 69 12 15 0
...........................................................TCTTTCGTTATCTAGCTGTATG................................................................................................. 22 1 1 175.00 175 64 39 27 41 2 2 0
...........................................................TCTTTGGTTATCTAGCTCTATG................................................................................................. 22 1 1 171.00 171 19 53 20 70 2 7 0
............................................................TCTTGGTTATCTAGCTGTATG................................................................................................. 21 2 1 171.00 171 20 75 63 5 4 4 0
...........................................................ACTTTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 169.00 169 111 5 14 10 27 2 0
...........................................................TCTTTAGTTATCTAGCTGTATG................................................................................................. 22 1 1 169.00 169 35 40 27 39 7 21 0
...........................................................TCTTTGGTTATCTAGCTGTACG................................................................................................. 22 1 1 166.00 166 17 69 36 32 6 6 0
.................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................... 24 0 1 165.00 165 15 77 38 33 0 2 0
...........................................................ACTTTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 164.00 164 88 18 23 9 26 0 0
..................................................................................................TAAAGCTAGCTTACCGAAG............................................................. 19 0 1 164.00 164 6 137 15 3 2 1 0
...........................................................TCTTTGGTTATCTACCTGTATG................................................................................................. 22 1 1 163.00 163 31 35 29 59 5 4 0
...........................................................TCTTTGGTTATCTAGTTGTATG................................................................................................. 22 1 1 163.00 163 53 37 25 10 35 3 0
...........................................................TCTTTGGTTATTTAGCTGTATGA................................................................................................ 23 1 1 160.00 160 125 3 9 5 14 4 0
...........................................................TCTTTGGTTATCTGGCTGTATG................................................................................................. 22 1 1 155.00 155 18 59 45 18 4 11 0
............................................................TCTTTGTTATCTAGCTGTATGA................................................................................................ 22 3 1 152.00 152 108 14 23 0 7 0 0
...........................................................TCTTTGGTTATCTAGCTGTAG.................................................................................................. 21 1 1 152.00 152 127 11 5 2 0 7 0
...........................................................TCTATGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 151.00 151 21 5 3 3 119 0 0
...........................................................TCTTTGGGTATCTAGCTGTATGA................................................................................................ 23 1 1 151.00 151 27 2 29 53 24 15 1
...........................................................TCTTTGGTTATATAGCTGTATGA................................................................................................ 23 1 1 150.00 150 2 90 8 12 35 3 0
...........................................................TCTTTGGTTATCTAGCTGTTTG................................................................................................. 22 1 1 150.00 150 4 15 4 78 32 17 0
...........................................................TCTTTGGTTATCCAGCTGTATG................................................................................................. 22 1 1 147.00 147 14 59 32 36 2 4 0
...........................................................TCTTTGGTTGTCTAGCTGTATG................................................................................................. 22 1 1 147.00 147 12 52 32 36 2 13 0
...........................................................TCTTTGGTTATCTAGCTATATG................................................................................................. 22 1 1 145.00 145 27 41 24 40 5 8 0
...........................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................... 24 2 1 143.00 143 54 37 42 0 2 8 0
...........................................................TCTTTGGTTATCTAACTGTATG................................................................................................. 22 1 1 143.00 143 15 34 19 61 7 7 0
...........................................................TCTTTGGTTATCTATCTTTATG................................................................................................. 22 2 1 142.00 142 0 2 0 117 0 23 0
...........................................................TCTTTTGTTATCTAGCTGTAT.................................................................................................. 21 1 1 140.00 140 37 82 6 1 13 1 0
...........................................................TGTTTGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 137.00 137 45 1 13 1 77 0 0
...........................................................TCTTTGGTTATCTAGCTGTATAA................................................................................................ 23 1 1 131.00 131 61 17 8 16 18 11 0
..........................................................CTCTTTGGTTATCTAGCTGTATG................................................................................................. 23 1 1 130.00 130 30 69 4 18 3 6 0
...........................................................TCTTTGGTCATCTAGCTGTATG................................................................................................. 22 1 1 129.00 129 11 58 26 17 7 10 0
...........................................................TCTTTGGCTATCTAGCTGTAT.................................................................................................. 21 1 1 128.00 128 105 8 5 2 2 6 0
.............................................................TTTGGTTATCTAGCTGTAT.................................................................................................. 19 0 1 122.00 122 81 20 12 0 2 7 0
...........................................................TCTTCGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 122.00 122 60 22 11 16 11 2 0
...........................................................TCTTTCGTTATCTAGCTGTATGA................................................................................................ 23 1 1 120.00 120 74 14 11 16 5 0 0
...........................................................TCGTTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 120.00 120 34 11 51 15 3 6 0
...........................................................TCTATGGTTATCTAGCTGTATG................................................................................................. 22 1 1 119.00 119 17 23 5 0 73 1 0
...........................................................TCTTTGGTTATCTTGCTGTATG................................................................................................. 22 1 1 118.00 118 37 20 18 36 1 6 0
...........................................................TCTTTGGTTATCTACCTGTATGA................................................................................................ 23 1 1 114.00 114 59 17 7 26 4 1 0
...........................................................TCTTTGGTTATCTAGCTGTCTGA................................................................................................ 23 1 1 112.00 112 4 11 8 61 2 26 0
..................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................... 23 1 1 111.00 111 5 78 18 8 0 2 0
...........................................................TCTTTGGATATCTAGCTGTATG................................................................................................. 22 1 1 109.00 109 25 15 11 24 34 0 0
...........................................................TCTTTAGTTATCTAGCTGTATGA................................................................................................ 23 1 1 102.00 102 39 11 10 16 8 18 0
...........................................................TCTTTGGTTATCTAGCTGGAT.................................................................................................. 21 1 1 101.00 101 88 4 2 2 1 4 0
...................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................... 21 0 1 100.00 100 89 5 2 3 1 0 0
...........................................................TCTTTGCTTATCTAGCTGTATG................................................................................................. 22 1 1 99.00 99 13 35 23 21 3 4 0
...........................................................TCTTTGGTTATCTAGCTGCATGA................................................................................................ 23 1 1 96.00 96 18 19 21 18 14 6 0
...........................................................TCTTTGGTTCTCTAGCTGTATG................................................................................................. 22 1 1 95.00 95 0 28 22 39 0 6 0
...........................................................TCTTTGTTTATCTAGCTGTAT.................................................................................................. 21 1 1 94.00 94 60 14 8 1 9 2 0
...........................................................TCTTTGGTTATCTAGCTGTGTGA................................................................................................ 23 1 1 94.00 94 35 9 8 21 11 10 0
...........................................................TCTTTGGTTATCTAGCTATATGA................................................................................................ 23 1 1 93.00 93 43 12 8 17 10 3 0
...........................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................... 24 0 1 91.00 91 38 29 16 4 2 2 0
...........................................................TCTTTGGTTATCTTGCTGTATGA................................................................................................ 23 1 1 90.00 90 59 6 5 16 1 3 0
...........................................................TCTTTGGTTATTTAGCTGTAT.................................................................................................. 21 1 1 90.00 90 76 9 1 0 1 3 0
............................................................CTTTGGTTATCTAGCTGTA................................................................................................... 19 0 1 88.00 88 86 1 0 0 0 1 0
...........................................................TCTTTGGATATCTAGCTGTATGA................................................................................................ 23 1 1 87.00 87 26 2 4 16 38 1 0
...........................................................TCTTTGATTATCTAGCTGTATG................................................................................................. 22 1 1 87.00 87 17 31 10 19 6 4 0
..............................................................TTGGTTATCTAGCTGTATG................................................................................................. 19 0 1 86.00 86 21 28 24 11 1 1 0
...........................................................TATTTGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 86.00 86 3 74 5 0 0 4 0
..........................................................CTCTTTGGTTATCTAGCTGTATGA................................................................................................ 24 1 1 85.00 85 36 23 1 7 13 5 0
...........................................................TCTTTGGTTACCTAGCTGTATGA................................................................................................ 23 1 1 84.00 84 23 26 12 12 7 4 0
...........................................................TCTTTGGTTATCTAGCCGTATGA................................................................................................ 23 1 1 83.00 83 17 21 17 18 9 1 0
............................................................TCTTGGTTATCTAGCTGTATGA................................................................................................ 22 2 1 83.00 83 19 19 39 1 4 1 0
...........................................................TCTTTGGTTATCTAGCTGTACGA................................................................................................ 23 1 1 80.00 80 12 23 21 9 11 4 0
...........................................................TCTTTGGTGATTTAGCTGTATG................................................................................................. 22 2 1 80.00 80 20 38 20 0 1 1 0
...........................................................TCATTGGTTATCTAGCTGTATG................................................................................................. 22 1 1 80.00 80 3 69 0 4 4 0 0
..............................................................TTGGTTATCTAGCTGTATGA................................................................................................ 20 0 1 78.00 78 47 8 11 3 8 1 0
...........................................................TCTTTGGTTATCTCGCTGTATGA................................................................................................ 23 1 1 76.00 76 3 12 16 33 1 9 2
...........................................................TCTTTGGTTATCTAGCTCTATGA................................................................................................ 23 1 1 76.00 76 26 11 12 25 1 1 0
...........................................................TCCTTGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 76.00 76 5 9 6 0 55 1 0
...........................................................TCTTTGGTTATCTGGCTGTATGA................................................................................................ 23 1 1 75.00 75 26 12 14 10 6 3 4
...........................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................... 24 1 1 73.00 73 17 15 3 22 13 3 0
...........................................................TCTTTGGTCATCTAGCTGTATGA................................................................................................ 23 1 1 72.00 72 18 23 12 8 10 1 0
...........................................................TCTTTGGTTGTCTAGCTGTATGA................................................................................................ 23 1 1 71.00 71 14 14 15 16 5 6 1
...........................................................TCTTTGGTTATCTAGATGTAT.................................................................................................. 21 1 1 70.00 70 6 52 5 1 0 6 0
...........................................................TCTTTGGTTATCTAGCTGTATCA................................................................................................ 23 1 1 69.00 69 10 9 8 36 3 3 0
...........................................................CCTTTGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 67.00 67 45 7 8 0 4 3 0
...................................................................................................AAAGCTAGCTTACCGAAGTT........................................................... 20 0 1 65.00 65 46 10 2 3 3 1 0
...........................................................TCTTTGGTTATCCAGCTGTATGA................................................................................................ 23 1 1 65.00 65 18 17 13 9 6 2 0
...........................................................TCTTTGGTTATCTAGCTGTTTGA................................................................................................ 23 1 1 65.00 65 4 6 0 12 36 7 0
...........................................................TCTTTGGTTATCTAGCGGTATG................................................................................................. 22 1 1 62.00 62 31 5 4 11 7 4 0
...........................................................TTTTTGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 61.00 61 33 7 5 0 15 1 0
...........................................................GCTTTGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 60.00 60 43 1 8 2 5 1 0
...........................................................TCTTTGGTTATCTATCTTTATGA................................................................................................ 23 2 1 60.00 60 0 0 0 49 0 11 0
............................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................... 23 1 1 59.00 59 56 0 3 0 0 0 0
...........................................................TCTTTGGTTATCTAGCTGTATTT................................................................................................ 23 2 1 56.00 56 25 2 1 14 1 13 0
...........................................................TCTTTGTTTATCTAGCTGTATT................................................................................................. 22 2 1 56.00 56 1 3 0 49 0 3 0
...........................................................TCTTTTGTTATCTAGCTTTATG................................................................................................. 22 2 1 55.00 55 0 5 2 44 0 4 0
...........................................................ACTTTGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 55.00 55 47 2 0 0 3 3 0
...........................................................TCTTTGGTTATCTAACTGTATGA................................................................................................ 23 1 1 54.00 54 21 5 6 15 6 1 0
...........................................................TCTTTCGTTATCTAGCTGTAT.................................................................................................. 21 1 1 54.00 54 38 8 5 2 0 1 0
...........................................................TCTTTGGTTATCTAGCTGTCTT................................................................................................. 22 2 1 53.00 53 0 0 0 51 0 2 0
............................................................CTTTGGTTATCTAGCTGTATT................................................................................................. 21 1 1 53.00 53 52 0 0 1 0 0 0
...........................................................TCTTTGGTTATCTACCTGTAT.................................................................................................. 21 1 1 53.00 53 32 8 4 3 4 2 0
...........................................................TCTTTGGTTATCTAGTTGTAT.................................................................................................. 21 1 1 52.00 52 34 8 2 0 7 1 0
...........................................................TCTCTGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 52.00 52 12 7 3 1 21 8 0
...........................................................TCTTTGGTTTTCTAGCTGTATGA................................................................................................ 23 1 1 51.00 51 13 1 0 0 35 2 0
...........................................................TCTTTGGTTATCTAGCTCTATT................................................................................................. 22 2 1 51.00 51 0 0 0 51 0 0 0
...........................................................TGTTTGGTTATCTAGCTGTA................................................................................................... 20 1 1 49.00 49 2 0 1 0 46 0 0
...........................................................TCTTTGGTTATATAGCTGTAT.................................................................................................. 21 1 1 49.00 49 2 39 2 3 0 3 0
...........................................................TCTTTGGTTATCTAGCTAT.................................................................................................... 19 1 1 48.00 48 36 6 5 0 0 1 0
...........................................................TCTTTGGTTATCTAGCTGTCT.................................................................................................. 21 1 1 48.00 48 1 1 2 7 0 37 0
...........................................................TCTTTGGTTATCTAGCTGTT................................................................................................... 20 1 1 48.00 48 28 8 10 0 2 0 0
...........................................................TCTTTGATTATCTAGCTGTATGA................................................................................................ 23 1 1 47.00 47 16 4 6 13 7 1 0
...........................................................TCTTTGGTTAACTAGCTGTATG................................................................................................. 22 1 1 46.00 46 14 13 6 9 3 1 0
...........................................................TCTTTGGTTATCTAGCTGTTTT................................................................................................. 22 2 1 45.00 45 1 0 0 33 1 10 0
.............................................................TCTTGTTATCTAGCTGTATG................................................................................................. 20 2 1 45.00 45 9 18 17 0 1 0 0
.................................................................................................AGAAAGCTAGCTTACCGAAGTT........................................................... 22 1 1 44.00 44 0 0 3 0 41 0 0
............................................................TTTTGGTTATCTAGCTGTATG................................................................................................. 21 1 1 44.00 44 10 21 10 0 2 1 0
.............................................................TCTTGTTATCTAGCTGTATGA................................................................................................ 21 2 1 44.00 44 27 6 9 0 2 0 0
...........................................................TCTTTGGTTATCTAGCTATGA.................................................................................................. 21 3 3 43.33 130 48 24 35 2 20 1 0
............................................................TCTTTGTTATCTAGCTGTATG................................................................................................. 21 3 4 43.00 172 64 56 47 3 2 0 0
...........................................................TCGTTGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 43.00 43 25 3 11 2 0 2 0
...........................................................TCTTTGGTTATCTAGCGGTATGA................................................................................................ 23 1 1 43.00 43 24 1 2 5 9 2 0
...........................................................TCTTTGGGTATCTAGCTGTAT.................................................................................................. 21 1 1 41.00 41 15 1 8 2 2 13 0
...........................................................TCTTTGCTTATCTAGCTGTATGA................................................................................................ 23 1 1 41.00 41 19 2 9 7 3 1 0
...........................................................TCTTTGGTTATCGAGCTGTATG................................................................................................. 22 1 1 41.00 41 27 1 0 10 0 3 0
..................................................................................................TAAAGCTAGCTTACCTAAGTTA.......................................................... 22 1 1 41.00 41 2 27 1 10 0 1 0
...........................................................TCTTCGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 40.00 40 22 13 3 0 2 0 0
...........................................................TCTTTGGTTTTCTAGCTGTATG................................................................................................. 22 1 1 40.00 40 8 2 5 10 14 1 0
............................................................CTTTGGTTATCTAGCTGTATTA................................................................................................ 22 1 1 39.00 39 38 0 0 1 0 0 0
...........................................................TCTTTGGTTATCTAGCTGAATG................................................................................................. 22 1 1 39.00 39 6 19 3 5 4 2 0
..................................................................................................TAAAGCTAGCTTACCTAAGTT........................................................... 21 1 1 39.00 39 2 35 1 1 0 0 0
...........................................................TCTTTGGTTATCTAGCAGTATG................................................................................................. 22 1 1 39.00 39 4 17 8 6 1 3 0
..................................................................................................TAAAGCTATCTTACCGAAGTT........................................................... 21 1 1 39.00 39 0 35 1 2 0 1 0
...........................................................TCTTTTGTTATCTAGCTGTATT................................................................................................. 22 2 1 38.00 38 1 8 0 28 0 1 0
..................................................................................................TGAAGCTAGCTTACCGAAGTT........................................................... 21 1 1 38.00 38 1 4 4 1 28 0 0
..................................................................................................TAAAGCTATCTTACCGAAGTTA.......................................................... 22 1 1 37.00 37 0 29 1 6 0 1 0
...........................................................TCTTTGGTTATCTAACTGTATT................................................................................................. 22 2 1 36.00 36 0 0 0 35 0 1 0
...........................................................TCTTTGGCTATCTAGCTGTATT................................................................................................. 22 2 1 36.00 36 3 0 0 32 0 1 0
...........................................................TCATTGGTTATCTAGCTGTATGA................................................................................................ 23 1 1 36.00 36 3 23 2 1 6 1 0
...........................................................TCTTTAGTTATCTAGCTGTAT.................................................................................................. 21 1 1 36.00 36 12 5 2 2 0 15 0
..................................................................................................TAAAGATAGCTTACCGAAGTTA.......................................................... 22 1 1 36.00 36 0 32 1 2 0 1 0
............................................................TTTTGGTTATCTAGCTGTATGA................................................................................................ 22 1 1 36.00 36 13 12 11 0 0 0 0
..........................................................GTCTTTGGTTATCTAGCTGTATGA................................................................................................ 24 0 1 36.00 36 36 0 0 0 0 0 0
...........................................................TCTTTGGTTATCGAGCTGTATGA................................................................................................ 23 1 1 35.00 35 28 0 0 5 0 2 0
...........................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................... 24 2 1 34.00 34 11 13 5 1 3 1 0
..........................................................TTCTTTGGTTATCTAGCTGTATGA................................................................................................ 24 1 1 34.00 34 34 0 0 0 0 0 0
...........................................................TCTTTGGTTATCAAGCTGTATG................................................................................................. 22 1 1 34.00 34 1 15 6 4 6 2 0
...........................................................TCTTTGGTTCTCTAGCTGTATGA................................................................................................ 23 1 1 34.00 34 4 8 1 17 0 4 0
...........................................................TCTTTGGTTATCTACCTGTATT................................................................................................. 22 2 1 34.00 34 0 0 0 33 0 1 0
...........................................................TCTTTGGTGATTTAGCTGTAT.................................................................................................. 21 2 1 33.00 33 17 9 6 0 0 1 0
...........................................................TCTTTGGTTATCTAGCTGCAT.................................................................................................. 21 1 1 32.00 32 9 9 6 0 1 7 0
..................................................................................................TAAATCTAGCTTACCGAAGTTA.......................................................... 22 1 1 32.00 32 2 24 2 4 0 0 0
...........................................................TCTTTGGTTATCTCGCTGTAT.................................................................................................. 21 1 1 32.00 32 3 3 4 4 0 18 0
...........................................................TCTTTGGTTACCTAGCTGTAT.................................................................................................. 21 1 1 32.00 32 14 9 7 1 0 1 0
...........................................................TCCTTGGTTATCTAGCTGTA................................................................................................... 20 1 1 32.00 32 2 2 0 1 27 0 0
...........................................................TCTTTGGTTATCTAGCTGTGT.................................................................................................. 21 1 1 31.00 31 11 4 3 2 0 11 0
............................................................TCTTGGTTATCTAGCTGTAT.................................................................................................. 20 2 1 31.00 31 14 4 8 0 1 4 0
.................................................................................................ATAAAGCTAGCTTACCGAA.............................................................. 19 0 1 30.00 30 1 21 5 1 1 1 0
..................................................................................................TAAAGCTAGCTTACCGAAGTC........................................................... 21 1 1 30.00 30 0 7 0 2 21 0 0
..................................................................................................TAAAGCTAGCTTACAGAAGTTA.......................................................... 22 1 1 29.00 29 0 26 2 1 0 0 0
...........................................................TCTTTGGTTATCTAACTGTAT.................................................................................................. 21 1 1 29.00 29 12 6 3 3 1 4 0
...........................................................TCTTTGGTTATCTATCTGTATGT................................................................................................ 23 2 1 28.00 28 19 3 2 2 0 2 0
..................................................................................................TAAAGATAGCTTACCGAAGTT........................................................... 21 1 1 28.00 28 0 27 1 0 0 0 0
...........................................................TCTTTGGTTATCTAGCGGTAT.................................................................................................. 21 1 1 27.00 27 21 2 0 1 2 1 0
...........................................................TCTTTGGTTATCTAGCTGTAAG................................................................................................. 22 1 1 27.00 27 7 10 1 6 1 2 0
..................................................................................................TAAAGCTAGCTTACAGAAGTT........................................................... 21 1 1 27.00 27 0 23 3 0 1 0 0
...........................................................TCTTTGGTTATCTGGCTGTAT.................................................................................................. 21 1 1 27.00 27 9 2 5 0 1 10 0
...........................................................TCTTTGGCTATCTAGCTGTATTA................................................................................................ 23 2 1 27.00 27 2 1 0 23 0 1 0
...........................................................TCTTTGGTTATCTATCTGTCTG................................................................................................. 22 2 1 26.00 26 0 0 0 25 0 1 0
..................................................................................................TAAATCTAGCTTACCGAAGTT........................................................... 21 1 1 26.00 26 1 22 2 1 0 0 0
...........................................................TCTTTGGTTATGTAGCTGTATG................................................................................................. 22 1 1 26.00 26 2 3 6 14 0 1 0
...........................................................TCTTTGGTTATCTAGCTGTATGATT.............................................................................................. 25 1 1 26.00 26 9 9 5 0 2 1 0
...........................................................TCTTTGGTTATCTAGCTCTAT.................................................................................................. 21 1 1 26.00 26 14 7 2 3 0 0 0
...............................................................TGGTTATCTAGCTGTATG................................................................................................. 18 0 1 26.00 26 5 16 2 2 1 0 0
...........................................................TCTTTGTTTATCTAGCTTTATG................................................................................................. 22 2 1 26.00 26 0 1 0 23 1 1 0
...........................................................TCTTTTGTTATCTATCTGTATG................................................................................................. 22 2 1 26.00 26 1 6 0 19 0 0 0
..........................................................ATCTTTGGTTATCTAGCTGTATG................................................................................................. 23 1 1 26.00 26 24 1 1 0 0 0 0
..........................................................ATCTTTGGTTATCTAGCTGTATGA................................................................................................ 24 1 1 25.00 25 25 0 0 0 0 0 0
...........................................................TCTTTGGTTATCTAGCTATAT.................................................................................................. 21 1 1 25.00 25 14 4 1 1 0 5 0
...........................................................TCTTAGGTTATCTAGCTGTATG................................................................................................. 22 1 1 25.00 25 3 8 3 6 5 0 0
...........................................................TCGTTGGTTATCTAGCTGGATG................................................................................................. 22 2 1 25.00 25 12 0 2 7 0 4 0
...........................................................TCTTTGGTTATCTAGCTGTTT.................................................................................................. 21 1 1 24.00 24 4 1 1 3 1 14 0
...........................................................TCTTTGGTTATCTAGCCGTAT.................................................................................................. 21 1 1 24.00 24 8 5 7 1 1 2 0
...........................................................TCTGTGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 24.00 24 1 4 1 0 17 1 0
...........................................................TCTTTGGTTATCTTGCTGTAT.................................................................................................. 21 1 1 24.00 24 16 3 2 1 0 2 0
..........................................................CTCTTTGGTTATCTAGCTGTAT.................................................................................................. 22 1 1 23.00 23 13 5 1 0 0 4 0
..........................................................TTCTTTGGTTATCTAGCTGTATG................................................................................................. 23 1 1 23.00 23 23 0 0 0 0 0 0
...........................................................TCTTTGGGTATCTAGCTGTATT................................................................................................. 22 2 1 23.00 23 0 0 0 20 0 3 0
..........................................................TTCTTTGGTTATCTAGCTGTAT.................................................................................................. 22 1 1 23.00 23 23 0 0 0 0 0 0
..................................................................................................TAAAGCTAGCTTACCGCAGTTA.......................................................... 22 1 1 23.00 23 0 4 0 15 0 4 0
...........................................................TCTTTGGTTGTCTAGCTGTAT.................................................................................................. 21 1 1 23.00 23 9 4 1 1 1 7 0
..........................................................GTCTTTGGTTATCTAGCTGTATG................................................................................................. 23 0 1 22.00 22 22 0 0 0 0 0 0
...........................................................TCTTTGGTTATCTAGCTGTACT................................................................................................. 22 2 1 22.00 22 1 1 0 18 0 2 0
...........................................................TCTTTGGTTATCAAGCTGTATGA................................................................................................ 23 1 1 22.00 22 10 3 6 2 1 0 0
...........................................................TCTTTGGTTATCTAGCTG..................................................................................................... 18 0 1 22.00 22 10 8 3 0 1 0 0
..................................................................................................TAAAGCTAGCTTACCGAATTTA.......................................................... 22 1 1 22.00 22 8 9 0 2 1 2 0
...........................................................TCGTTGGTTATCTAGCTGGATGA................................................................................................ 23 2 1 21.00 21 14 0 0 5 0 2 0
.............................................................TCTGGTTATCTAGCTGTATG................................................................................................. 20 1 1 21.00 21 0 7 14 0 0 0 0
...............................................................TGGTTATCTAGCTGTATGA................................................................................................ 19 0 1 21.00 21 7 7 3 1 2 1 0
...........................................................TCTTTGGTTAGCTAGCTGTATG................................................................................................. 22 1 1 21.00 21 1 4 2 11 0 3 0
...........................................................TCTTTGGTTATCCAGCTGTAT.................................................................................................. 21 1 1 21.00 21 6 4 8 0 1 2 0
...........................................................TCTTTGTTTATCTATCTGTATG................................................................................................. 22 2 1 21.00 21 0 3 1 15 0 2 0
...........................................................TCTTTGGTTATCTAGGTGTATG................................................................................................. 22 1 1 21.00 21 2 10 3 5 0 1 0
...........................................................TCTTTGGTTATCTAGCGGTAGG................................................................................................. 22 2 1 20.00 20 19 0 0 1 0 0 0
...........................................................TCTTTCGTTATCTAGCTGTATT................................................................................................. 22 2 1 20.00 20 1 1 0 18 0 0 0
..................................................................................................TAAAGCTAGATTACCGAAGTT........................................................... 21 1 1 20.00 20 0 18 1 0 0 1 0
...........................................................TCTTTGGTTAACTAGCTGTATGA................................................................................................ 23 1 1 20.00 20 10 3 3 0 3 1 0
............................................................TTTTGGTTATCTAGCTGTAT.................................................................................................. 20 1 1 20.00 20 15 4 1 0 0 0 0
...........................................................TCTTTGGTTATCTAGCTGTATGAAT.............................................................................................. 25 1 1 20.00 20 4 8 7 0 1 0 0
...........................................................TCTTTTTTTATCTAGCTGTATGA................................................................................................ 23 2 1 20.00 20 14 0 1 5 0 0 0
...........................................................TCTTTGGTTATCTCGCTGTCTG................................................................................................. 22 2 1 20.00 20 0 1 3 14 0 2 0
...........................................................TCTTTGGTTATCTAGGTGTATGA................................................................................................ 23 1 1 20.00 20 6 4 3 5 1 1 0
...........................................................TCTTTGTTTATCTAGCTGTATTA................................................................................................ 23 2 1 20.00 20 0 0 0 20 0 0 0
..................................................................................................TGAAGCTAGCTTACCGAAGTTA.......................................................... 22 1 1 19.00 19 6 1 1 1 10 0 0
..................................................................................................TAAAGCTAGCTTACCGAATTT........................................................... 21 1 1 19.00 19 5 8 5 1 0 0 0
...........................................................TCTTTGGTTATCTAGATGTATT................................................................................................. 22 2 1 19.00 19 0 1 0 16 0 2 0
...........................................................TCTTTGGTTATCTAGCTGTATTAA............................................................................................... 24 2 1 19.00 19 3 3 0 10 0 3 0
...........................................................TCTTTGGTTATCTAACTGTATTA................................................................................................ 23 2 1 19.00 19 0 0 0 17 0 2 0
...........................................................TCTTTGCTTATCTAGCTGTAT.................................................................................................. 21 1 1 19.00 19 9 7 3 0 0 0 0
............................................................CTTTGGTTATCTATCTGTATGA................................................................................................ 22 1 1 19.00 19 19 0 0 0 0 0 0
...........................................................TCTATGGTTATCTAGCTGTAT.................................................................................................. 21 1 1 19.00 19 13 0 0 0 4 2 0
.............................................................TTTGGTTATCTAGCTGTATT................................................................................................. 20 1 1 18.00 18 1 0 0 13 0 4 0
.................................................................................................ATAAAGCTAGCTTACCGAAGTTT.......................................................... 23 1 1 18.00 18 3 8 5 0 1 1 0
..................................................................................................TAAAGCTAGCTTACCGAAGTTT.......................................................... 22 1 1 18.00 18 6 6 6 0 0 0 0
...........................................................TCTTTGGTTATCTATCTTTATT................................................................................................. 22 3 8 18.00 144 0 0 0 130 0 14 0
..................................................................................................TAAAGCTAGCCTACCGAAGTTA.......................................................... 22 1 1 18.00 18 3 6 3 6 0 0 0
...........................................................TCTTTGGTAATCTAGCTGTATG................................................................................................. 22 1 1 18.00 18 7 4 5 1 0 1 0
...........................................................TCTTGGGTTATCTAGCTGTATG................................................................................................. 22 1 1 18.00 18 1 5 0 6 5 1 0

Anti-sense strand reads

GGAAGGGAAAGTTGGTAGACGTCACAATGTATTGGCTGAGATATGTCCCACGATACAACAGAAACCAATAGATCGACATACTCACTATTTATTGCAGTATTTCGATCGAATGGCTTCAATTATAATCGCAGACTGGTCGCTTTGTCGGTTTTTGTTTCGGGTGCAACGCATATGAATT

********************************************((((..(((((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))).)))).)))).******************************************** 		Read size # Mismatch Hit Count Total Norm Total V107

male body		 M055

female body

 V040

embryo

 V060

head

 M057

embryo

 V108

head
GGAAGGGAAAGTTGTTAAA............................................................................................................................................................... 19 2 10 0.80 8 3 2 1 0 1 1
...........................................................................................................................................CTTGGTCGGTTGTTGTGTCGGG................. 22 3 2 0.50 1 0 0 0 1 0 0
GGAAGGGAAAGTTGTTAGAG.............................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0
GGAAGGGAAAGTTGTTAA................................................................................................................................................................ 18 2 19 0.47 9 5 3 0 0 0 1
.....................................................................................................................................AGGTCGCTTTGTAGGTTTT.......................... 19 2 3 0.33 1 0 0 1 0 0 0
................................................................................................GTATTTCGATCGCTTGGTTTC............................................................. 21 3 5 0.20 1 0 1 0 0 0 0
GGAAGGGAAAGTTGTTAGTG.............................................................................................................................................................. 20 3 11 0.18 2 0 2 0 0 0 0
.GAAGGGAAAGTTGTTAAACGG............................................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 1 0
...............................................................................................ATTATTTCGATCTATTGGCTT.............................................................. 21 3 8 0.13 1 0 0 1 0 0 0
.............................................................................................................ATAGGTTCATTTATAATCGC................................................. 20 3 19 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4784:19355627-19355804 + der-mir-9a Known_mirbase ----C-CTTCCCTTTCAACCATCTGCAG-----------------------------------------------------------TGTTACATAACCGACTC----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCA------------GCGAAACAG-CC-AAAAACAAAGCCCACGTTGCGTATAC---------------TTAA
droYak3 3L:20989367-20989544 - dya-mir-9a-1 Known_mirbase ----C-TTTCCCTTTCAACCATCCGCAG-----------------------------------------------------------TGTTACACAACCGACTC----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCA------------GCGAAACTG-CC-AAAAACAAAACCCACGTTGCGTATAC---------------TTAA
droSec2 scaffold_29:261332-261511 + dse-mir-9a Known_mirbase ----C-TTTCCCTTTCAACCATCTGCAG-----------------------------------------------------------TGTTACAAAACCGGCTC---T-----------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCA------------GCGAAACAG-CC-AAAAACGAAGCCCACATTGCGTATGC---------------TTAA
droSim2 3l:19208450-19208629 + dsi-mir-9a Known_mirbase ----C-TTTCCCTTTCAACCATTTGCAG-----------------------------------------------------------TGTTACACAACCGGCTC---T-----------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCA------------GCGAAACAG-CC-AAAAACGAAGCCCACATTGCGTATAC---------------TTAA
dm3 chr3L:19558179-19558358 + dme-mir-9a Known_mirbase ----C-TTTCCCTTTCAACCATCTGCAG-----------------------------------------------------------TGTTACACAATCGACTC---T-----------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGCCCA------------GCGAGACAG-CC-AAAAACGAGGCCCACATTGCGTATAC---------------TTAA
droEug1 scf7180000409472:104869-105046 + ----C-TTTCCCTTTCAACAATTCGCGG-----------------------------------------------------------CGTTATGCAATCTACTA----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCCGTCCA------------GCGAAACAG-CC-AAAAAGCAAGCCCACGTTGCGTATAC---------------TGAA
droBia1 scf7180000302377:2053585-2053758 - ----C-TTTCCCTTTCAGCGGTTCCCAG-----------------------------------------------------------TGTTATGCAATCGACTC----------------CATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCA------------GCGAAACAG-CC-G----CGAAACCCACATTGCTCGTAC---------------TGAA
droTak1 scf7180000415276:67401-67578 + ----CCTTTCCCTTTCAGCAATTCACAG-----------------------------------------------------------TGTTATATAATCGACTT----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAACAA-CC-GAAAA-GAAGCACACGTTGCGTATAC---------------TCAA
droEle1 scf7180000491249:6854968-6855146 + ----C-TTTCCCTTTCAACAATTCGCAG-----------------------------------------------------------TGTTATATAATCGACTC----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGTCCA------------GCGAAACAAACC-AAAAAGCCAACCCACGTTGCGTATAC---------------CGAA
droRho1 scf7180000779964:5254-5432 + ----C-TTTCCCTTTCAACAATTCCAAG-----------------------------------------------------------TGTTATATAACCGACTC----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGTCCA------------GCGAAACAAACC-AGAAAGTAAACCCACGTTGCGTATAC---------------TTAA
droFic1 scf7180000453831:108839-109020 + ----C-TTTCGCTTTCGACAATTGCCAG-----------------------------------------------------------TGTTACACAATCCCATC----------------CATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAACGG-CC-AAAAAGGAAACCCACGTTGCCTATGC---CA--------AGCCAG
droKik1 scf7180000302694:81661-81803 + ----C-TTTCCCTTTCAGCAATGCCGAG-----------------------------------------------------------TGTTACACAATCAACTC----------------CATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAA----------------------------------------------------
droAna3 scaffold_13337:17332387-17332569 - dan-mir-9a Known_mirbase ----C-TTTCCCTTTT--------------TTTCAAAC----------------------------------AATACTCCCACAAA-TCTTATATAA----CAC----------------TAT---GGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAACAGTCCAAAAAAGGAAACCCACATTGCGTATAC---------------TCAA
droBip1 scf7180000396741:632306-632488 - ----C-TTTCCCTTTT--------------TTTCAAAC----------------------------------AATACTCCCACAAA-TCTTATACAA----CAC----------------TAT---GGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCAAAACAGTCCAAAAAAGGAAACCCACATTGCGTATAC---------------TCAA
dp5 XR_group8:7634776-7634961 + dps-mir-9a Known_mirbase AGATC-GTTCCC----ATCGATAG-----------------------------------------------------AATG-----GTGTAATTTAAAGTTCTT----------------CAATCAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAACCG--------AAGAAACCCACGTTACGTA--CTGCGAGCCAACATAGCCAA
droPer2 scaffold_48:412916-413097 + dpe-mir-9a Known_mirbase AGATC-GTTCCC--------ATCGGTAG-------------------------------------------------AATG-----GTGTAATTTAAAGTTCTT----------------CAATCAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAAC----C-AA---AGAAACCCACGTTACGTA--CTGCGAC----CATAGCCAA
droWil2 scf2_1100000004540:842173-842354 + dwi-mir-9a Known_mirbase CAA---GTGCCCAATCAAT--------A-----------------------------------------------------------TGATGAACAATCGAAAATGTTGTGACCCTCGCATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATACATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTTCATCAGTCATGTGAACGAAAAAG----AAAAGTAAAACCT-------------------------------A
droVir3 scaffold_13049:13136983-13137133 + dvi-mir-9a Known_mirbase TAA---G------------------------------GCGAAACACAGCTAACGACCAGCCA-----------------------------------------G----------------GATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGCTCA------------ACGTA-------------------CCACAGCGCGTATAC---------------TTAA
droMoj3 scaffold_6680:14226478-14226636 - dmo-mir-9a Known_mirbase ----C-AAT--------------TGCAGAGAGTCAAAG-------------------------------------------------CGACAGCCAATGGG-AA----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGCTCA------------GCGTAACAA----------------CACAGTGCGTATAC---------------TTAA
droGri2 scaffold_15110:23882680-23882859 + dgr-mir-9a Known_mirbase ----G-CTGCATATTAAAACG---------------------------------AGCAACAAGCAGAAAGCAAATAGGATT-----GTGCAAGTT--TGTGCCG----------------CATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTCTTCA------------ACGTAAC-------------------ACGGCGCGTATAC---------------GCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
----C-CTTCCCTTTCAACCATCTGCAG-----------------------------------------------------------TGTTACATAACCGACTC----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCA------------GCGAAACAG-CC-AAAAACAAAGCCCACGTTGCGTATAC---------------TTAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................221235258.002352585063414529824026387622227323313
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................231145370.001453705827724265404711794284111848195
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21149365.00493652722716123607702818380295
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................2117174.007174682420295268169538140
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................2217095.007095152027217697290132540
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................2216564.00656434496125168873440
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................2314531.00453123722041636410087155
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................2214385.00438542782218273910
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................2113455.00345532809517431010
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................2013216.0032161175927122315963650
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................2212257.002257303234601576668370
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................2412152.002152768106848258351712
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................2011881.00188118600015150
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................2311623.00162342068302012546500
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................231710.007106568148784050
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................191573.00573249125111801070
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................241547.005472053029101381305
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................201509.00509165927361671050
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................211397.003971381202861500
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................231397.0039726592952222090
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................211357.0035720816102171310
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................251338.0033862115101011490
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................231319.003197728730221550
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................221291.002918333143353750
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................201272.00272172582631570
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................211222.002221019430780
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................201190.0019012101341420
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................211180.001801676379690
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................221177.00177175000020
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................221175.001752212156925320
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................241165.0016515023338770
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAG..........................................................................................191164.001646213151370
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................211152.001521270725110
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................241143.001435428042370
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................191122.001228127012200
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................231111.00111502818780
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................211100.0010089103250
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................24191.00913822416290
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................19188.008886010010
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................19186.008621111124280
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................20178.0078478131180
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................24173.007317133223150
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................20165.0065463132100
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................................................23159.005956000300
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................23156.00562511314120
............................................................................................................................................CTTTGGTTATCTAGCTGTATT..............................................................................................................................21153.005352001000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................20148.0048282001080
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATGA.............................................................................................................................24136.003636000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................................................24134.0034113115130
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAA...........................................................................................19130.003011115210
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTC........................................................................................21130.003002102070
...............................................................................................................................................TGGTTATCTAGCTGTATG..............................................................................................................................18126.002651022160
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATG..............................................................................................................................23122.002222000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTACT..............................................................................................................................22122.002210218010
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................18122.002210100380
...............................................................................................................................................TGGTTATCTAGCTGTATGA.............................................................................................................................19121.00217211370
.............................................................................................................................................TTTGGTTATCTAGCTGTATT..............................................................................................................................20118.001810413000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTT.......................................................................................23118.00183110580
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTT.......................................................................................22118.00186000660
droYak3
----C-TTTCCCTTTCAACCATCCGCAG-----------------------------------------------------------TGTTACACAACCGACTC----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCA------------GCGAAACTG-CC-AAAAACAAAACCCACGTTGCGTATAC---------------TTAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................232223497.0044699410306295693684402506725234070687723101009
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................222110485.0022097030542219012149045129405265801843772290
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21220153.0040306493413150124447682277383229000100
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................2026345.00126906876871087026911541691050
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................2222988.505977191628177414891686132860000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................2122576.505153663228593261985945370010
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................2221715.0034300159275330821781091010
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................2421544.00308822750019051585011512012100
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................2321408.502817273583145985841951380000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................2221394.502789323274191655140000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................2321336.002672200542552582850000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................2121301.5026033471224113820000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................2221049.0020986115141777617420310000
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................212953.001906116991493402210000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................232843.00168645075714572688302100
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................202537.00107411060413320000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................242468.0093694172532382636380000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................232359.0071876115134476520000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................222238.00476125435126129120000
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................192231.00462831658244657211030
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................242206.504136021298292210000
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................212206.504130110228553790010
...........................................................................................................................................TCTTTGGTTATCTAGCT...................................................................................................................................172193.0038600000005713280
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................232185.0037005422228520410000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................222184.003682162526472250000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................252160.00320111369125623280000
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................202152.0030408361120512230000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................202134.002684341704724250000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTC........................................................................................212113.502270022610000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTC........................................................................................222107.502150021500000000
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................21271.501430129930200000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................21264.50129018781413150000
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................20263.501272298690010000
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................18262.0012460531001131220
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................24259.5011901767808100000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................24254.5010956271215260000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................21346.3313915571421423140000
...........................................................................................................................................TCTTTGGTTATCTAGC....................................................................................................................................16246.00920000000110810
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................20238.00760432820210000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................21236.00724071930120000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................20236.00721173614760000
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................19235.0070145733740000
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................19230.00600213070020000
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................19228.5057050700000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................24228.50576241750140000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................22225.0050047300000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................23223.0046029271430000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................................................23222.0044041210000000
...............................................................................................................................................TGGTTATCTAGCTGTATGA.............................................................................................................................19218.50370111922300000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................................................24216.003279703420000
................................................................................................................................................................................CATAAAGCTAGCTTACCGAAGTT........................................................................................23214.5029012800000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAC......................................................................................23214.50290114110120000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGC.........................................................................................20214.0028002800000000
.............................................................................................................................................TTTGGTTATCTAGCTGTATT..............................................................................................................................20213.5027020241000000
...............................................................................................................................................TGGTTATCTAGCTGTATG..............................................................................................................................18213.0026091240100000
...........................................................................................................................................TCTTTGGTTATCTAGCTGC.................................................................................................................................19312.67381901801000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................23312.0036070351920000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................20212.002418102660000
droSec2
----C-TTTCCCTTTCAACCATCTGCAG-----------------------------------------------------------TGTTACAAAACCGGCTC---T-----------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCA------------GCGAAACAG-CC-AAAAACGAAGCCCACATTGCGTATGC---------------TTAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................221235175.00235175159954970813400535467
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................231134949.001349491820717385899219436
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21133076.003307616283784840694876
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................2219922.00992258262468571859
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................2114781.004781266131413411860
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................2213539.00353927812367591266
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................2312709.0027092882111758452
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................2011866.001866778527170391
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................2411819.001819306373869271
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................2211498.00149813591411312
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................2111239.0012391086369720
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................2011197.0011971188252
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................2311138.001138439277261161
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................231837.008371146547233
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................201749.007495939544107
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................191672.0067227141120240
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................211483.00483762035829
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................241441.004417810121250
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................251391.003913098163100
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................221359.00359157894667
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................211356.0035696995156
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................231253.00253271514170
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................201243.0024354711180
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................221214.0021436468646
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................241206.0020631514741
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................201196.001966752293
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................211190.0019015841477
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................231152.0015213249421
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................201145.001455749039
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................221134.0013414296922
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................241131.001311679414
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAG..........................................................................................191130.001305811106
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................19197.00975751619
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................23189.0089064439
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................21185.0085664132
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................24163.0063853812
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................19153.0053154286
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................21151.0051352122
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................18148.0048102126
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................19144.004443100
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................20138.0038142202
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................24136.0036413316
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................20136.003623283
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTT.......................................................................................22135.0035410318
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................22132.003232000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................21126.00264868
............................................................................................................................................CTTTGGTTATCTAGCTGTATT..............................................................................................................................21124.002424000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAT......................................................................................24122.002201129
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAA...........................................................................................19120.002002414
.................................................................................................................................................................................ATAAAGCTAGCTTACCGA............................................................................................18119.001902611
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAAA..........................................................................................................................26118.001833102
...............................................................................................................................................TGGTTATCTAGCTGTATG..............................................................................................................................18118.001852101
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAC......................................................................................23117.001700152
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTT.......................................................................................23116.00163814
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................................................23115.001514001
...............................................................................................................................................TGGTTATCTAGCTGTATGA.............................................................................................................................19114.00142291
...........................................................................................................................................TCTTTGGTTATCTAGCTGA.................................................................................................................................19114.00143047
............................................................................................................................................CTTTGGTTATCTAGCTGT.................................................................................................................................18114.001414000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................................................24112.001210011
..................................................................................................................................................................................TAAAGCTAGCTTACCGAA...........................................................................................18112.00120192
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAAA..............................................................................................................................22112.00122406
..............................................................................................................................................TTGGTTATCTAGCTGTAT...............................................................................................................................18111.00119011
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................23111.00115501
...........................................................................................................................................TCTTTGGTTATCTAGCTGTGA...............................................................................................................................21110.00100280
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAGA..............................................................................................................................22210.002040142
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAC...........................................................................................................................2519.0091251
....................................................................................................................................................................................AAGCTAGCTTACCGAAGTTA.......................................................................................2019.0092160
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATGA.............................................................................................................................2419.0099000
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTAT...............................................................................................................................2219.0099000
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATG..............................................................................................................................2319.0099000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAG...........................................................................................................................2519.0091134
...........................................................................................................................................TCTTTGGTTATCTAGCTGTTG...............................................................................................................................2119.0092160
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTAA...........................................................................................................................2518.0082105
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAT............................................................................................................................2318.0086110
droSim2
----C-TTTCCCTTTCAACCATTTGCAG-----------------------------------------------------------TGTTACACAACCGGCTC---T-----------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCA------------GCGAAACAG-CC-AAAAACGAAGCCCACATTGCGTATAC---------------TTAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................231379049.0037904939411185541406661179819446218923479758566419010021390127754235193
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................221162934.00162934159788255294608013104250200418952255518575205552148354101440
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21170900.0070900302091076365078383111232503079103712466488902288102
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................23146036.00460366510428535126130033241215701001
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................20114374.00143744403167844443137471638461423694216138164234
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................2415310.005310933492146526500243995388381792374917
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................2213103.00310312440176150523107316385251825016010
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................1812566.00256642311930534681153211163200121741
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................2312401.002401104246734718800122394102311409000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................2212212.0022123741259920039351159100000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................2112186.002186157836323850010100000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................2312074.002074726183103520005342915900000
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................1911931.001931107334268686813431946886401029
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................2511649.0016494592694433300156268104040010101
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................2111517.001517281919643174553456293451105000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................2411100.00110032416331446006181248112102000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................221918.009181364375931503323001200002
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................241765.007651775441260012433603102010
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................231657.0065764105279621018219375020000
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................201627.00627420540175503240000000
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................211534.0053482145418072804201000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................221516.00516545461115178584124705000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................211480.0048024213265380000000300000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................211399.003992188115900922800100000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................201366.0036628074390000000000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................231335.003353138111067130102000
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................211331.00331922925008231017705303001
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................221300.003001302830350046141004300000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................241256.00256141871430031420100000
...........................................................................................................................................TCTTTGGTTATCTAGCTGG.................................................................................................................................191247.00247149811600000000100000
...........................................................................................................................................TCTTTGGTTATCTAGCTGC.................................................................................................................................191237.00237174441810000000000000
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................201205.002050132000432313013700010
...........................................................................................................................................TCTTTGGTTATCTAGCT...................................................................................................................................171165.0016500000003155000193993
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................221143.0014318833000134010300000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................241133.00133361142323101890800000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAAA..........................................................................................................................261132.00132413022300112590000000
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................20193.0093623380004111811000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................24186.0086010000000207804010
...........................................................................................................................................TCTTTGGTTATCTAGCTGTG................................................................................................................................20183.008318204320000000000000
...........................................................................................................................................TCTTTGGTTATCTAG.....................................................................................................................................15175.007500000022212320042514
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAC...........................................................................................................................25165.00651443800000340200000
...........................................................................................................................................TCTTTGGTTATCTAGCTGA.................................................................................................................................19161.00615010010000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................................................24157.00572921410000010100000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................20154.0054530452520531100000
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................19149.004910022111500000000000
...........................................................................................................................................TCTTTGGTTATCTAGC....................................................................................................................................16144.0044000000003910034618
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAG..........................................................................................19141.0041110352700000400000
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................19139.00391312152001230000000
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................19138.0038004300011651800000
................................................................................................................................................GGTTATCTAGCTGTATGA.............................................................................................................................18137.00372311000004132200000
.............................................................................................................................................TTTGGTTATCTAGCTGTATT..............................................................................................................................20136.0036000000000003600000
...............................................................................................................................................TGGTTATCTAGCTGTATGA.............................................................................................................................19133.00330020001110144100000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAG...........................................................................................................................25130.0030561300000310200000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGACA...........................................................................................................................25128.00281331000000000200000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................23127.002776040003000700000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGCA............................................................................................................................24125.002594910010000100000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................23125.0025000000000002500000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................................................23122.0022200200000000000000
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................21121.0021301110200000400000
...................................................................................................................................................TATCTAGCTGTATGA.............................................................................................................................15121.0021000000005151000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTC................................................................................................................................20120.0020181000000010000000
.................................................................................................................................................GTTATCTAGCTGTATGA.............................................................................................................................17120.002000000006770000000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................22119.0019000180000000001000
..................................................................................................................................................TTATCTAGCTGTATGA.............................................................................................................................16118.0018000000001431000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAAA..............................................................................................................................22117.001795030000000000000
..................................................................................................................................................TTATCTAGCTGTATG..............................................................................................................................15116.0016000000101122000000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGG.............................................................................................................................22115.0015101310000000000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................21115.001521131000121300000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGATA...........................................................................................................................25115.001551310001200200000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTC.............................................................................................................................23114.0014100000010001200000
.............................................................................................................................................TTTGGTTATCTAGCTGTATGATC...........................................................................................................................23114.0014201100000000001000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTGG...............................................................................................................................21113.001363400000000000000
dm3
----C-TTTCCCTTTCAACCATCTGCAG-----------------------------------------------------------TGTTACACAATCGACTC---T-----------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGCCCA------------GCGAGACAG-CC-AAAAACGAGGCCCACATTGCGTATAC---------------TTAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................2211191976.001191976000080348361201881051799905000281017284583660065320120151254531142625154671097813536648521665195123198621898722189470003427180000000000000000000009273728820721987962946367536153024635911424163841261223130305932671651641027520816319312088101975761010634651916110328470776666529894610321752143135201227114141301387353764441036539010817522819513830021062041481000002221186030364366488903652592411613600164276313542252465307119015401530420439217186643589144045572055302691000010824901147055233388230736283541318347381100223961424254200014600414742984316328297412941035721176651481021020384035300122001312211422123857617373561562333982168011529952341481835820266684161116442091115249348117931175714202585442991655452663124121744152921724308602160911345056513953674574215344991142024354781700000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................231620044.0062004400001596231329693513292485310010015880913280138602421292144464455971421170242925401036321041115141812872371075726000167121760000000000000000000101134796783185759900555162610641697501258310933916113689623133892106697925927462055646220140262164240375840672086211441882794163137391657671435116419521793556218813006111824300309203841736459411477769553899240917636000111550152181639484069973113135165061655054100786270992461010401400441918282662353203200134373003252011699870057413552191068839851101110101298325269621827311426300017011300290542024618149022666841155054263010277810100198811100150024013002006422076851586711395560222288826104896496623877969736541067574641822264799354998551257521549218010067475987652131313723240991227896146393645858469245492300512
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................211302390.0030239000002066006383730813505710475073542414680303564121485751611432701515214810547384161512226254857233384900058951315700000000000000000321226815779521343111720330393642396451120810361588371095513933604163987025621121744393072021566166464886834478297735298825259918837853001000015198330472396332452483113768641108530799129000100870130102731226006997208303059851405257721236912192662431107001183212974314916900012094470120000039720030072230153669116764356355210432249309677426100710030000570828890925158450327188728154138101110625103010020172310029779629686425210511906780240611624011384895099044070614343673579173698326593251434746722377472060237535443801301007311434541149207252145933902414278120010016
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................22131270.003127000001142274337141180920400342512401016186769865449416523212321118745102610500010000000000000000000000152063341838011001739762531483220931115152384147520813111273914960071324084179171361571283283512360000001000578138030925546441213413150000000010099511000753561827875174764217238513563318000069224329213150002200211000000161000000000079440256228371759447700001090080811780208312120003243300244000001632000000000400001714514841814118700100145359546047316682011395219051376782232702363081025142500100020000335130956094280171150000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................21126917.00269170000860258013050014001511400303017453223024422634124928231387100000000000000000000000000004149292130012932208144612262350971183005062310111102314137204710715117952761331220712000000000002744991592243231162433000003000005017580447483122734148352193899187128000004961491395160001170132000000030000000001510314515912517113200000000449359112128912002220252020100000195000000000050000171543615730189281190002310681300100212114879434743162883583133866206038160136303802000030020584214110332256364584211100000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGATC...........................................................................................................................25119742.00197420000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108788859001000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................22118350.001835000001000001110000200002460610000000023814161611048103214314106600000000000000000000000000014517725351304434988623124921201351022421001001971195611701733701817186156000000000016235064738415222219164250012000203200021149009010173712707208759000063141378211008059000000131500000000002398459211240000210027371319199436826002759892053100000253201000000010000433429250000223814813114314727872650105391029410310986140600211000000000009328415830563934000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................22116934.001693400003014242000021100009701012899273110148132001100005011210211000000000000000000000000000004813583140003830471701111910000050000620435264233113191324821260000000000363387862531710000808010000000000046215110284305148311643051161052125911772907000068175302000902700000030000000000617202001111000100000000206109032461001401170640000023000000000100000330314318018000035025047078431528437122690353111767074126002659030000200005501523622117154171165300000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................20115365.0015365000010001122402006000119830102206217193472861352144251103507525110002192200000000000000000000079526341001787922724352443207676641211290431117102752058112706218360117531441590015300000008132622025532560400000100000002943980209132922272342217752614312000012880222712000450162000002300000000073798521818234492363200002300128116177943002112196011000000340000010000500009401246113832900002778483436560182180189143126917311320474045881400213147000000000004721441658219402246324100000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................23113924.0013924000010326258176064000000615000676820416118776200110216041002321100000000000000000000000000023076939214731009152778815716352712144100111112212820293602711501352701421311000000000049208564308362123415102100000000000440585026812173492292241758330637646320800000138884451000370510000001200000000020803840117203323000012002562090422950007199065000002600000110001000041921012412100002206154239270248253310650123314147115767019320000102000012747219848613239000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................2319160.0091600000510147375010000001133000000000000200020502130321000000000000000000000000000004511061041002517426695531164492828696320112333151312251575021502083618451581070000000010219291011212322100100000000000279233022801361226105114302708000001616110311000570360000000300000502072818101820135794115320000130017893021745001266880570000031000000000000000294207304260000229929418019111818424817508699521250029826900166240000000000025157634783173159179000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................2418940.008940000012300815812400002000010000000000004011103020211112101000000000000000000000000000289472291468101074166192292874812625191041251981211539334918118147290700701313195100618756100000000005541013411002025100000000200000300292018600192044114615901691700003511176650002105300000076000000000322454067213125612100025280030823802954100095620500000018001000000000000511510713190000119614810281258366115780231219512344025229000162800000010000110387255571408480000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................1916934.006934000000000000001521960031141000972184867151131010113104110131010001162000000000000000000100201410246017224166131014231000101923302016213516190105605275511260110121500000922020301035220000001000000011815305899227920538013031702400000100201514000170680000000000000000515634312151828410000000025360233200005310703900000180000000000000001115151121100000124515919124480779577214268591500122221001281100000020000247694246759590141000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................2313520.0035200000000100212000000000140000000000000000100050007220000000000000000000000000000015119720000350203490300661100001112121314210110412032151844287830000001100371917200010301000000000001042380560023010103200000500400000020000000000000000012730001000000001190080450336200033180130000080000000000000001504170300000252010466177047153011901131650705900001000000000007261461577000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................2412413.0024130000310201150000010000100000000000000010101001001110000000000000000000000000000008424170012526841522132331812432211230312540601513130637080202200000000000714600010080000000000000005974049007440241230350000001528010300050700000011000000000073409214011250000162123006750081710004614013000001000000000000000004013327000018444383329813017039753980699100523000000000003710010723382818000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................2112161.002161000051000336500000000021000000000000000000114020001000000000000000000000000000003111000070110012220010030020000100052342201031529025220210000000000102000100240000000000000005178039001331027061010750000056421100040300000010000001000001831204221200001860052072600001644020000004000000000010000411362905000011441041271390662017241349031610010200000010000372866615253129000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATATC............................................................................................................................2412122.00212200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379743000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................2311973.001973000021000110200000200011000040000000011001003000010100000000000000000000000000201122300010012111220432000103002400219160606944180712000000000044414020000800010000000000054650271031362404420741000000880071000206000000100000000003151111001410000001000013150413900008371069000002400000000001000041002023400001415847534447261708141124020280001010000020000312165421292927000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................2211581.001581000056158153980000000002100000000000000000001010000010000000000000000000000000000022112000208102241100108140000001114010012102062130521070000000000039500000130100000000000002726013506543394280192000003212200005050000000100000000002761500000300001712002428047000011901600000800000000000000001012113000006963284550741017028114263158510011200000000000341187221342629000000
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................2011522.00152200000000000100000000003000006365560110000000001000110100000000000000000000000000000301000010000000300310000000000101000000000102010000000000014727200000900010000000000022034006138081000000000705000060600000000000000000005500170001000000001349106190000813032000003200000001000000002011101000002830231772140970410007014190002100000010000371137728594134000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................2211359.00135900003101111300000100000300000000000000000000003000100000000000000000000000000000111000000012011010004300000100001030511203460717200000000003511120000009100000000000001131701700135030811311000008320111000106000000100000000002111110000000000021170023180350000121501000000800000000001000022130502000001918114571742111024321318005355001100000000000043766326764239000000
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................2111322.0013220000200000000000000000000000402318100000000000000000000000001000000000000000000000000186000102002102016205001000002320003000011302110000000000004222001030400000000000000048050022102343031000008207200070300000000000000000114300100111000000004625019000043080000080000000000000000300030000000293311339816218905010018039520003200000010000501626415484430000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................2511296.00129600001100000100000000000000000000000000000000000000100000000000000000000000000000113183514155045321121218681415480141314262713540024032010117050144000000000006185000010300100000006000034380220061501802502800000097111000205000000300000000000254011316120000220018210370001147011000009000000000000000010102000000053262622163511100311044503033002000000000000016584814191416000000
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................2111234.00123400000000000000000000000300024312586100002000110100000010000000000000000000000000000000131100020400210300340000000000220300100000300020000000000003629300000200000000000000050060201084135420190000034010000002000000000000000000000112614120000220010767031000010608000001200000000000000003000011000001314981001158101020160950110000000000000329286945000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................2011210.0012100000110000000000010000150000100000110100000011000000000000000000000000000000000000000000000010010001004100000000000004600010206124000000000001100001007000000000000000932016001373711542570000027521300003000000000100000000007460000000000000000916071300005140700000300000000000000023084306000006277609321427170713104003440010310000000000032135805403624000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................2311182.0011820000202475311000000000130000000000000000000000000000000000000000000000000000000009126130000372233141017188000311111014507037100328140960000000000035710000000000000000000005352044002190613202310000014302000050100000000000000000004500010011000000004623062100011110800000400000000000000002220311000001119179148107281805030290111600110000000000001574203967000000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................2211145.0011450000001040000000000000110100132738003000001000000000000000221000000000000000000000015053262006822118407031936510000002983000630100260328400000000000870010000300000000000000043240230054632926015000000210040000102000000000000000000011221223210000030033240010000810300000000000000000000005120000000001393913414596030102401014000010000000000010281551193000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAATC.............................................................................................................................2311097.0010970000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000795301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................211989.0098900000000000000000000000000010243010000000000000001000000000000000000000000000000100000000000001000001200000000000000420100100000000000000000360000000300000000000000020940661432705361513000007200000020200000000000000000108700000000000000003402610002160600000200000000000000005012405000007244546771411100610111801817001300000000000051170401411147000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................241754.007540000000000200000000000100007170000000000000000000001010000000000000000000000000000001020000000010000013120000000003000015010057100010000000000124700000080000000000000002542010583136131912728360000016200000000200000000000000000151100001000000010003709160000143002400000400000000000000000030402000001115141453266301110060123001030000000000013621126310000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTATC.....................................................................................241727.007270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000350377000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................211719.0071900000200101310000000000400000000001000000000000010000000000000000000000000000000000000004100010010000000000000001100300001100504300000000000000000000100000000000000026150120038030124018000000016000000000300000000000000000013200000000000000005001200001300000000000000000000000140013030000033474461790103901016078000000000000000042370140000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................241575.005750000000100011000000000000000000000000000000000000000000000000000000000000000000002012110001140023140031000000000721000740002015061730000000000023200000000000000000000007603000402020100000020010000002000000000000000000010000102000000190123001130050000103050000010000000000000000000110000001943897200001012023001000000000000041130133000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................201543.00543000000000000000062000031000110000018000000000100000000000000000000000000000000000000000000010002000010200000000000000000000010000000000000000010000000100000000000000051401310410126340000011000000100000000000000000002574000000000000000011026100011409000002000000000000000000023010000032213059184212010020060010000000000000281441349177000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................201542.005420000000000000000110000010000000000000000000000000020000000000000000000000000000000000000101000101000200000000000000013020200062105001100000000000000002000000000000000101606003306030900000090000000000000000000000000000120120000110000000020002200061805000003000000000000000000300000000014714182101016111250412001020000000000041181314878000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................211542.00542000053001102101000000000000000000000000000000000001000000000000000000000000000002000000031110030100237100000002000017300010002010600000000000000000000010000000000000026250100081006027039000000520000000200000000000000000000000000000000000000010401000002802000002000000000000000010301020000021151028672301900212306190000000000010000142852538000000
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................191509.00509000000000000000000000131000000000000000000002000000010000000000000000000000000000000000000200022100100000000000000001000010003120000000000000040100003000000000000000316091021333143040200000011020000000000000000000000000000103610210000000027703200000404000001000000000000000000001000000010748511530000001014000000000000000061152434000000
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................181458.00458000000000000000000000000000030390100001000000000000000000200000000000000000001000006100010300010000103000000000000303303001006487100120000000000000000000000000000000041501130290441605110000014120000000000000000000000000038400100000000000006604500001000000002000000000000000000000010000142162541866301600001503500101000000000100222024000000
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................201398.00398000000000200000000000014000000000000000000100000000000001171000000000000000000000100040001124125350027000000000002000400001000202200000000000130000001100000000100000031180150023412711501800000016000000010000000000000000000000100120101000000007100100001002000001000000000000000120300030000087915813300200004056000010000000000021641101000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAG..........................................................................................191389.00389000000000000000011000010000020100000000000010000000000000000000000000000000000000000000000100000000000000000000200100000000201100000000000000100000004000000000000000210010200122104000003202000000000000000000000000024500000000000010000102800008708000003000000000010000000000010000022283741115101020050420000000000000000117520381710100000
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................201350.00350000000000000000000000000000113661020000000000000000000000000000000000000000000000000000000000000000000000000000000006603015151000200000000000414000000000000000000000002436014427747121643100000300020000000000000000000000000001000000000000000000013000013010000000000000000000000300000000000623810011000000100000000000000000005741011000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................241346.00346000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000010000013000000000000103101001500032000000000000000000100000000000000000770500180203012000000910000000000000000000000000001002001121100000100030060000730000000200000000000000000000010000001510149113102020010012140000000000000000165032137913000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTC.............................................................................................................................231313.0031300000000001000000000000000000000000000010000000000000000000000000000000000000000000114000002017200000000000001000000311600000004116535000000000000410000000100000000000000440700000000000000001101000000000000000000000000000100010000000018400126012000022010000000000000000000000000000000000100591231000000802600000000000000000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................231299.0029900000000000000000000000000000000000100000000000000000000000000000000000000000000054211001010010000000000000000000000073010100013013100000000000022100101050000000000000005308001202060620000082030000001000000010000000000000000000020000010020130303000128040000000000000000000000100000000000189793340080000407900000000000000005540001000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAA...........................................................................................191297.00297000000000000000020000000000011010100000000000000000000000000000000000000000000000000000000000000000000000000000000002050000000000000000000001100000000000000000000000330002001101430000000000000000000000000000000000000110000000000000000320000100010200000000000000000000000000000000009617201010010010202200000020000000001512863136000000
.............................................................................................................................................TTTGGTTATCTAGCTGTATGATC...........................................................................................................................231293.002930000000000000000000000000000000000000000000000000000000000000000000000000000000000002000001000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153135000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................211292.0029200000000000000000000000000000000000000000011000000000000100000000000000000000000010050000000000000000000000000000000920104130000100000000006290000100000000000000000030270141071111402514920000027000000000000000000000000000001000100001000000001101000000100000002000000000000000000000120000031028200000000100200000000000000000130000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................241278.00278000000001100000000000010000010000000000000000000000000005440000000000000000000000041311001101120242425013422001000203300013800000000000000011000000002000000000000000330600230215041000004300000000100000001000000000010100011010000010006200300003104000001000000000000000002000000000074456830000100505120000000000000000727112663000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................231277.0027700000000000000000100001000000000000001000010000000000000000000000000000000000000000000000000001000001000000000000000000000000101000000000000100000000300000000000000031020014030201000000320000001000000000000000000003100000000000000300130414000013140100000050000000000100000001020100000137111623240401003025002111000000000012401521612000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGA............................................................................................181235.00235000000000000000010000000000020001200000000000000000000000000000000000000000000010001000000000010000000000000000000002040000000210000000000000000000000000000000000000029000000002312000000000000000000000000000000000000110000000000000000010100000040000000100000000000000000000000000008111736600006000020210000000000000000055172053000000
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................191232.002320000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000011000100000000010001000000000000100000000000011030000010000000000000000100001801100004000000100000020100000001000000000006500000000000000001460100000000000000100000000000000001230000000002653163061020000404140010000000000000512951096000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTATC.....................................................................................251199.00199000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010198000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................201191.0019100000000010000000000000000000000000000000000000000000000000000000000000000000000000820000000000000010000000000110010300000000200000000000000140000000000000000000000002040001111200021000003200000000000000000000000000201100000000000000001260010000010000000000000000000000004011000000005314262433010100204300001000000000002752010000000
droEug1
----C-TTTCCCTTTCAACAATTCGCGG-----------------------------------------------------------CGTTATGCAATCTACTA----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCCGTCCA------------GCGAAACAG-CC-AAAAAGCAAGCCCACGTTGCGTATAC---------------TGAASizeHit CountTotal NormTotal
No Reads
droBia1
----C-TTTCCCTTTCAGCGGTTCCCAG-----------------------------------------------------------TGTTATGCAATCGACTC----------------CATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCA------------GCGAAACAG-CC-G----CGAAACCCACATTGCTCGTAC---------------TGAASizeHit CountTotal NormTotal
No Reads
droTak1
----CCTTTCCCTTTCAGCAATTCACAG-----------------------------------------------------------TGTTATATAATCGACTT----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAACAA-CC-GAAAA-GAAGCACACGTTGCGTATAC---------------TCAASizeHit CountTotal NormTotal
No Reads
droEle1
----C-TTTCCCTTTCAACAATTCGCAG-----------------------------------------------------------TGTTATATAATCGACTC----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGTCCA------------GCGAAACAAACC-AAAAAGCCAACCCACGTTGCGTATAC---------------CGAASizeHit CountTotal NormTotal
No Reads
droRho1
----C-TTTCCCTTTCAACAATTCCAAG-----------------------------------------------------------TGTTATATAACCGACTC----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGTCCA------------GCGAAACAAACC-AGAAAGTAAACCCACGTTGCGTATAC---------------TTAASizeHit CountTotal NormTotal
No Reads
droFic1
----C-TTTCGCTTTCGACAATTGCCAG-----------------------------------------------------------TGTTACACAATCCCATC----------------CATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAACGG-CC-AAAAAGGAAACCCACGTTGCCTATGC---CA--------AGCCAGSizeHit CountTotal NormTotal
No Reads
droKik1
----C-TTTCCCTTTCAGCAATGCCGAG-----------------------------------------------------------TGTTACACAATCAACTC----------------CATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAA----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
----C-TTTCCCTTTT--------------TTTCAAAC----------------------------------AATACTCCCACAAA-TCTTATATAA----CAC----------------TAT---GGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAACAGTCCAAAAAAGGAAACCCACATTGCGTATAC---------------TCAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................22182455.0082455142395765314672932479727215
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................23147153.00471531571392401627493692986339
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21125620.0025620124111188100466056671594
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................2112997.002997495269413564391397
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................2212546.002546839258156389290614
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................2212188.00218852625740100435830
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................2011979.0019797424465232446108
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................2311907.00190711749957117166294
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................2211759.0017592705670306274234
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................2311475.00147557710318201413163
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................2211246.0012461218153154
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................2111081.001081104112121411
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................201940.0094093200350
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................191611.0061125622912217725
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................241602.00602192781097106119
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................241493.00493221193778093
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................231400.00400499311741253
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................241311.003116074159216
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................211272.0027212218014244
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................211254.002548600355380
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................231205.0020524294602464
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................221164.0016452111302941
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................241151.0015111314319101
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................201139.00139140377108
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................201138.001381922183355
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................201132.0013251141081831
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................211125.0012525171173431
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................201124.00124480016546
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................211116.0011685104656
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................221106.00106171110401513
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................25189.008926656739
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................24185.00852110131931
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAG..........................................................................................19185.00856237562
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................23180.008045011888
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................23177.00772716461014
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................21174.00746720302
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................21172.00727207497
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................19169.00695501472
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................20157.005732502117
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................23148.00484138725
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................19148.00484800000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................22145.00454400010
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................19142.004219510116
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTT.......................................................................................23133.003311103126
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................20132.00321381343
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................24132.003210004711
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAT......................................................................................24128.00285000419
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTC........................................................................................21127.00270160155
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTT.......................................................................................22126.00265001911
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAT............................................................................................................................23122.00222110000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTC........................................................................................22121.00210170121
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAA...........................................................................................19121.0021541353
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................................................23119.00191900000
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATGA.............................................................................................................................24119.00191900000
............................................................................................................................................CTTTGGTTATCTAGCTGTATT..............................................................................................................................21119.00191900000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTC.............................................................................................................................23118.00181021302
..............................................................................................................................................TTGGTTATCTAGCTGTAT...............................................................................................................................18115.00151400010
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTA........................................................................................21114.00140100310
...............................................................................................................................................TGGTTATCTAGCTGTATG..............................................................................................................................18114.0014420044
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................18114.0014410711
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................................................24112.0012300135
............................................................................................................................................CTTTGGTTATCTAGCTGT.................................................................................................................................18110.00101000000
...............................................................................................................................................TGGTTATCTAGCTGTATGA.............................................................................................................................19110.0010640000
droBip1
----C-TTTCCCTTTT--------------TTTCAAAC----------------------------------AATACTCCCACAAA-TCTTATACAA----CAC----------------TAT---GGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCAAAACAGTCCAAAAAAGGAAACCCACATTGCGTATAC---------------TCAASizeHit CountTotal NormTotal
No Reads
dp5
AGATC-GTTCCC----ATCGATAG-----------------------------------------------------AATG-----GTGTAATTTAAAGTTCTT----------------CAATCAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAACCG--------AAGAAACCCACGTTACGTA--CTGCGAGCCAACATAGCCAASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................231169434.00169434408407753038613032284623985157146330862707
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................221135432.00135432125320261504113083761823601768162193727274
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21196899.00968994125964839813482252044025814146254413950
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................2016504.0065047236061173249681544143134631
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................2215353.0053533194481447180151716401350
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................2014459.00445904415180540719
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................2213498.00349813292261235806136
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................2112941.00294119086562273024653620416
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................2312839.00283920116556717521868181279364
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................2112452.00245202323204300220350
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................2212405.00240512929206411131037644539
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................2311987.001987110302791152088380317
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................1911678.0016781512848681514125121100
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................2411564.0015646551123121284274044584
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................2211406.00140604534917818099920211
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................2111374.001374322775568140001
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................211673.00673021321353920021333
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................211414.00414032704115540013
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................201406.0040601031128478106112
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................191346.00346024214592301151
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................231325.0032581215447664220111
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................221309.003090136441341141701133
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................231291.00291073112176818012
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................191274.00274027300000001
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................241269.002692973201381301391
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................201256.002565194190933005
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................251199.001991571411562401071
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................231197.0019716444926956006
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................211155.00155014430510002
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................201143.0014303659721722000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................221140.0014012246945310211
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................211134.0013405131741624001
............................................................................................................................................CTTTGGTTATCTAGCTGT.................................................................................................................................181126.00126012401000010
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................221119.00119011211100031
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................201104.00104038529210740
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................241101.00101024206454002
..............................................................................................................................................TTGGTTATCTAGCTGTAT...............................................................................................................................18186.0086057211020419
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................23182.008206003356041
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................24176.007601325217100216
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................19176.0076030118060030
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................24176.00762406240100210
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTC........................................................................................21174.0074006014000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................20168.006804650548000
............................................................................................................................................CTTTGGTTATCTAGCTGTATT..............................................................................................................................21162.006205800000013
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................20162.006205235200000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................................................23151.005105100000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTC........................................................................................22146.004600424000000
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTAT...............................................................................................................................22142.004204200000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................24141.0041015126030014
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAG..........................................................................................19140.004002815213000
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................18134.003461601201017
...............................................................................................................................................TGGTTATCTAGCTGTATGA.............................................................................................................................19134.003401750300009
.............................................................................................................................................TTTGGTTATCTAGCTGTATT..............................................................................................................................20132.003204012510001
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATGA.............................................................................................................................24132.003203100000001
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTT.......................................................................................22129.002901810640000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................23124.00240521961000
...........................................................................................................................................TCTTTGGTTATCTAGCTGC.................................................................................................................................19124.002410320000000
............................................................................................................................................CTTTGGTTATCTAGCTGTAA...............................................................................................................................20121.002102100000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTG.............................................................................................................................23121.002102101600110
...............................................................................................................................................TGGTTATCTAGCTGTATG..............................................................................................................................18120.002001010200007
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................21120.00201653311000
.............................................................................................................................................TTTGGTTATCTAGCTGTA................................................................................................................................18119.00190911014003
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAT............................................................................................................................23119.001901401000013
...........................................................................................................................................TCTTTGGTTATCTAGCT...................................................................................................................................17117.001700000000116
................................................................................................................................................GGTTATCTAGCTGTATGA.............................................................................................................................18117.001701000100015
....................................................................................................................................................................................AAGCTAGCTTACCGAAGTTA.......................................................................................20117.001701201211000
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATG..............................................................................................................................23117.001701700000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAC......................................................................................23116.00160171610000
............................................................................................................................................CTTTGGTTATCTAGCTGTT................................................................................................................................19115.001501500000000
droPer2
AGATC-GTTCCC--------ATCGGTAG-------------------------------------------------AATG-----GTGTAATTTAAAGTTCTT----------------CAATCAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCA------------GCGAAAC----C-AA---AGAAACCCACGTTACGTA--CTGCGAC----CATAGCCAASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................22147996.00479963602467186044197719719725
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................23142291.00422911652652775829339745486714
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21136435.00364352794128308496792100073163
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................2313266.00326632217134147
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................2012134.00213473746626237438230
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................2111608.001608010258361761326
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................2211508.00150821187305343509143
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................201961.00961293106175
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................221911.00911721715112936047
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................231810.008101771744897203111
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................241579.00579162793155129123
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................191494.00494321321011318225
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................221471.00471644056410
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................231388.00388851143789315
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................211366.00366133946115
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................231333.0033327232113240
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................221284.00284127447310336
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................211218.0021811491418729
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................191108.00108055324197
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................211106.0010673518181
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................23199.00990343152711
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................24197.009734812121912
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................20196.009601721131629
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................25195.0095388361624
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................22195.00951319132615
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................22180.0080051017471
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................21166.0066524941014
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................18164.00645060440
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................21158.0058020102917
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................24155.00553827170
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................20149.0049142102210
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................21142.00422451372
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................23142.0042014012142
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................20139.00391190784
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................24136.00361831365
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................24134.003402162104
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................19129.00290290000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................22122.00220200200
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTT.......................................................................................22122.0022032782
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAG..........................................................................................19121.0021050763
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................21118.00180152100
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................20116.0016343015
..............................................................................................................................................TTGGTTATCTAGCTGTAT...............................................................................................................................18115.00150110220
............................................................................................................................................CTTTGGTTATCTAGCTGTATT..............................................................................................................................21115.00150150000
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTAT...............................................................................................................................22113.00130130000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATCT.............................................................................................................................23111.00111000100
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................20111.0011054020
............................................................................................................................................CTTTGGTTATCTAGCTGT.................................................................................................................................18111.00110100010
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................19111.0011131123
.............................................................................................................................................TTTGGTTATCTAGCTGTATT..............................................................................................................................20111.0011024140
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................20110.0010020530
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAAA..........................................................................................................................26110.0010800020
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAAA..............................................................................................................................22110.0010020161
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................24110.0010220114
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................................................2418.008010151
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................2317.007011032
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTC.............................................................................................................................2317.007001150
droWil2
CAA---GTGCCCAATCAAT--------A-----------------------------------------------------------TGATGAACAATCGAAAATGTTGTGACCCTCGCATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATACATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTTCATCAGTCATGTGAACGAAAAAG----AAAAGTAAAACCT-------------------------------ASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................221328196.0032819615105184811650518746490641
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................231199658.001996583726824072489111501918408
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21132524.00325241405110386194929703168
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................22117216.001721659951152126933361
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................2118937.0089372840729244313779
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................2316003.006003579427611561
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................2314825.0048258250374088442
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................2013627.0036272650572126100179
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................2413518.003518987522791487443
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................2212610.0026100145691760636
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................2312115.0021151168524107147169
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................2212100.002100151892715333
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................2111676.001676513309184148
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................2311346.0013461206658247
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................2311333.00133324215833441
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................251893.008934206715251140
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................191757.00757426193285852
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................201752.007520749003
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................221582.00582115781530074
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................221580.005802425610106166
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................241564.005642501181111273
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................201527.0052759227243160
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................211502.005024954003
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................221443.00443534419143184
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................211351.0035114126617332
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................241331.0033119324177
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAG..........................................................................................191256.0025629218225
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................211243.002435568121098
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................201241.002410122346160
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................241218.002181011018026
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................181211.002112033014
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................241169.00169371337046
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................241131.0013197144214
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................201122.0012204311104
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................231122.001220235166
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATCC.............................................................................................................................231113.0011380190014
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................211109.001097531246
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................211104.001040670298
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................201102.001027219803
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATCCC............................................................................................................................24196.00966870021
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................19187.008713032528
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................20179.00792502169
...........................................................................................................................................TCTTTGGTTATCTAGCTGG.................................................................................................................................19167.0067660010
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................21166.006604121535
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................19164.00643460114
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................................................23155.0055054010
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................20154.005402811510
...............................................................................................................................................TGGTTATCTAGCTGTATGA.............................................................................................................................19151.005102701113
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAAA..........................................................................................................................26149.00492651134
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTC............................................................................................................................24144.0044325106
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................22142.0042141000
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................19139.0039039000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................................................24137.0037288100
...........................................................................................................................................TCTTTGGTTATCTAGCTGTC................................................................................................................................20134.0034285010
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTCC...........................................................................................................................25131.0031196006
...............................................................................................................................................TGGTTATCTAGCTGTATG..............................................................................................................................18129.00290100118
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAT......................................................................................24128.00280101116
..............................................................................................................................................TTGGTTATCTAGCTGTAT...............................................................................................................................18126.0026518021
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAG...........................................................................................................................25122.0022122044
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGCA............................................................................................................................24121.0021190011
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAC...........................................................................................................................25120.0020120062
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTC.......................................................................................22120.0020070211
...........................................................................................................................................TCTTTGGTTATCTAGCTGC.................................................................................................................................19218.0036360000
................................................................................................................................................GGTTATCTAGCTGTATGA.............................................................................................................................18118.0018010080
...........................................................................................................................................TCTTTGGTTATCTAGCTGTCC...............................................................................................................................21118.0018122004
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATGA.............................................................................................................................24118.0018018000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAAA..............................................................................................................................22117.0017310103
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTG.......................................................................................22116.0016101104
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATG..............................................................................................................................23114.0014014000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGACA...........................................................................................................................25114.0014120002
...........................................................................................................................................TCTTTGGTTATCTAGCTGTG................................................................................................................................20113.0013111010
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAGT...........................................................................................................................25113.001390112
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTC........................................................................................21113.001321136
....................................................................................................................................................................................AAGCTAGCTTACCGAAGTTA.......................................................................................20112.001204062
....................................................................................................................................................................................AAGCTAGCTTACCGAAGTT........................................................................................19112.001203054
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGATC...........................................................................................................................25112.001283001
............................................................................................................................................CTTTGGTTATCTAGCTGT.................................................................................................................................18112.0012012000
droVir3
TAA---G------------------------------GCGAAACACAGCTAACGACCAGCCA-----------------------------------------G----------------GATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGCTCA------------ACGTA-------------------CCACAGCGCGTATAC---------------TTAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................221237243.00237243128334782134821567183662056455824501133215402231800131048712875831631175320727142901131031851315313125404134121111610322539514265137161661710422996967719416433127014627619432726075107419573156493819603510730432462469106745013666342722894787710
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................231194084.00194084281892832547633299942894168166413632453803233345194258516998113543734323274912782821771095242116033699976197394911833935226636573141429252187633522522103797818961644106015851278775647128421287737413143282711216736935212816557523664117894017378251190612668
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21193444.009344412244619147532225116215533316225294600061973830148236413068964222614833649167937917110733775874231465355319751713185546622020024314112218312320125937215038971694654011178435041791106544884922126197197199
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................22123504.002350471411901375202725192112003216190930386097452030411391207101315151092618667242041626211335635335745980532561891894133736465013523762891149559165020755228504400100000000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................2318260.008260888325615515804600055341999727622815811024639345214276468145381348431321351070801114146119266194192383170291213137128867056103776113110901100000001010100
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................2317502.007502118405106774351337211553000222140591928139343382908538514061214043403560101839610121244751881014326192658604664410671281331961211628372950
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................2116684.00668419533164616678331274001735347131346408203121483392244531643041122230138305251510004064445107985355256461849700300100001000100
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................2216580.00658027772169248132481136520001074117773715481188314101072310120372000011230000000000000000021337842928802000021204000463
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................2015436.00543621969364710712709724400000946618483915512440723735710638840890000013111016102224365351886950655945453417072802950157823294417153171122131914
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................2414748.004748681675012122112528054100129012443157553817317279238103208328137361117681616612540001434313911138146146041672542572301010211013501118252520
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................2312963.00296370620333650051304000000000040000000471608010001200000210314322330041591901001112202010000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................2212434.002434214521240202362330000161743684964419828702252678827683215112903400013971142012198274343165217535404300100000001001
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................2212194.002194032050380302020000430000304000204155120200020800000010100010100011141000001000000001000
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................2111671.0016710015651403000500002002205010000029020400000600000000000000000001282900000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................2411436.0014363785177812230100270000432113291264165713020361074092052021107801210311266796578323219177010408332253512689
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................1911305.0013054310326460771262500004326142821735152962040316531520700100265000001101001300513041564600120000111600222
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................2011184.001184001111000000000003303620270000221851102000002000000000000000000002300000000000000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................231890.00890013020107030000122541884493176299020123872277403000105000011210011220110321322401100000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................251660.00660317761140122201130003913215541434400141131882301201410180000010121122651213164250000344431263298118
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................231627.006279763163124221400001022221381310010251502800001510010138273116285342756441200000000000000100
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................211617.006175325352450200000000350010803000001312030000050000000000000000001115700000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................211433.004332538430732190000231857523317000001225709000001200000000000000000001993300000000222000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................241420.004202511459140500030000121436511021410000115310011000011100000110111110011121283100000001200211010
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................201395.0039503962101070280000031112192400000993100280000131000000000000000000135304800000000000001000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................221360.00360321487416032150000125631071200000442905001006000001001021001110133304200000100000000040
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................241306.0030600151010802000038176211514523360010114242181100260000010000100000000016111400000000000000000
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................211292.0029220122290407260000320143204010106861206000105000000010001000110213122100000200000010000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................221292.00292325733021304000074032220071000041012040000010000000000000000000029802701000000000000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................211288.00288012560112050000181191813821412000108931209000001000000001001020010000315400000000000000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................201282.00282011315050209000029138131210330140210079250700000300010001101200002102223600000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................181216.00216236583140403200012004022390000051651801010003001000000121100024130000000101012000010
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................231193.0019310260000103000013532165136291001004120140000060000000000000000000719300000003000000000
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................211166.00166001151000000000074115002100000365300001100000000000011001100112200000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................241165.001654309370302020000000200312000001334020000010001021041232510103104400010200202000131
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................191152.001520270112010000003742212140000033413060000130000000000000000000111300001000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................201133.0013363931103000000001220113210000001030100000400000000000000000000191100000000010000000
...........................................................................................................................................TCTTTGGTTATCTAGC....................................................................................................................................161129.001290000000000000000000000000000000000000000000003391210172791210522800000000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................211114.00114165053010000000018000070001000131301000003000000000000000000016200000000000000100
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................201109.001090013000040300005506350860000043140000000000000000000000000001271100000000000000000
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................201103.0010302407070000000001010040400000222807000103000000000000000000023300300000001000000
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................191100.00100003830610000000011000111200000303803000009000000000000000100004400000000000010000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................24194.00942181550200000000100100101000101405010100020000000000000000000913800000000020000001
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................22194.009400921000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................23190.0090004000000100008831226051200000153301000001000001000001200000043400000000000000000
...............................................................................................................................................TGGTTATCTAGCTGTATG..............................................................................................................................18182.00820022002000000003124018030010011703010000004000000000000000000000000000000000000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTT.......................................................................................22178.0078017100000000009121041071100000242401000001000001000010000000006200000000000000000
...............................................................................................................................................TGGTTATCTAGCTGTATGA.............................................................................................................................19177.0077001900801000000330200303000102113217000003000000000000000000001000010100001000001
..............................................................................................................................................TTGGTTATCTAGCTGTAT...............................................................................................................................18168.006801350051000000004110000200010013504000003000000000000000000000100000000000000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAG..........................................................................................19167.006700511303010000322325176000000120010000020000000000000000100015000000000000000000
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................19161.006100600000000000000000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................20161.006100400000001000040022102200000220100000000000000000000000000002000000000000000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTT.......................................................................................23158.00580050000000000072263514600000030303000001000000000000000000003400000000000000000
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAT......................................................................................24151.00510030000001000071292325000110030400001000000000000000010000013100000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................................................24150.005031081021000000000110001200000010201000001000000000000011000005400000010000000201
...........................................................................................................................................TCTTTGGTTATCTAGCTGG.................................................................................................................................19146.004673900000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................................................23144.004400400000000000000000000200000010000000000000000000000000000001000000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAAA..........................................................................................................................26143.00433720000000000041210000500000212100004000000000000000000000001300000010000001101
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGATC...........................................................................................................................25137.00371519000000000000000000000000000000000000000003003023121001500000000000000000000
..................................................................................................................................................................GTGATAAATAACGTC..............................................................................................................15137.00370000000000000000000000000000000000000000000334258210113000400000000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAAT..............................................................................................................................22134.003401100000000000000010300000000000000000000000000000000000000422200000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTC.............................................................................................................................23132.0032010101000000001100001000000000000100000000000000000000000001410100000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGC.................................................................................................................................19132.003242401000000000000000010000000000000000000000000000000000000001000000001000000000
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTC.......................................................................................22131.00310001010200000020110317300000000100000002000000001000000000014000000000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTACT..............................................................................................................................22130.003000000000010000010000170000000000001000000000000000000000000081100000000000000000
................................................................................................................................................GGTTATCTAGCTGTATGA.............................................................................................................................18129.002900131010000000000100000200000111201100002000000000000000000001000010000000000000
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATCC.............................................................................................................................23126.002612110000000000000000000000000000000000000000000000000000000002100000000000000000
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATG..............................................................................................................................23126.002600260000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
----C-AAT--------------TGCAGAGAGTCAAAG-------------------------------------------------CGACAGCCAATGGG-AA----------------TATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGCTCA------------GCGTAACAA----------------CACAGTGCGTATAC---------------TTAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................231600396.0060039642805391914520649749237915004
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................221363672.00363672321387466684791112120448232786
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21188888.008888853252124738075387181807015
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................20115626.001562617351816923313064407
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................22113858.0013858238117921434228809311
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................2119095.0090957483732665806569559
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................2317091.0070919092211492065322284
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................2216258.006258464176871655111255
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................2315264.0052642139438441362372135
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................2214524.00452433692566109721
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................2013846.0038463817125156
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................2413741.0037417302221111912246241
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................2213504.003504248158712272859067
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................2113041.00304124224271154613
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................2212536.002536107395233343283509
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................2112353.0023531203723256
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................2412053.00205326810130611479114
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................2312030.002030208120731011416112
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................2111038.0010381708251674817
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................231953.009534584121478018
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................191856.008565436676942129
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................221795.007956449251862118
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................201676.0067635392956238
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................201654.0065499192182129133
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................231493.00493632942179324
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................241430.004302646223486
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTC........................................................................................211373.0037310013710
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................201349.003493210022969
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................211339.00339156042613644
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................251323.003237136194310747
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTC........................................................................................221317.0031711003123
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................211291.00291231122020629
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................211274.00274180300901
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................191224.0022419291015817
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................191218.00218170312111210
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTC............................................................................................................................241145.001452409244048
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................201133.0013346100842
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................241132.00132155568516
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................191122.00122109000130
...............................................................................................................................................TGGTTATCTAGCTGTATGA.............................................................................................................................191121.00121144001030
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATCC.............................................................................................................................231112.00112605816122
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................201111.001113803143818
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................241100.001001722134710
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................24197.00971938271714
................................................................................................................................................................................CATAAAGCTAGCTTACCGAAGTT........................................................................................23191.00913000880
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................22190.009078001110
............................................................................................................................................CTTTGGTTATCTAGCTGTATC..............................................................................................................................21172.00727200000
..............................................................................................................................................TTGGTTATCTAGCTGTAT...............................................................................................................................18169.006952011132
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................18168.006811272433
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGC.........................................................................................20166.00660000660
................................................................................................................................................GGTTATCTAGCTGTATGA.............................................................................................................................18164.00646100570
...............................................................................................................................................TGGTTATCTAGCTGTATG..............................................................................................................................18162.006216800380
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................................................23158.00585200060
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................23153.005319911644
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................23152.005212912136
.............................................................................................................................................TTTGGTTATCTAGCTGTATT..............................................................................................................................20151.005113612200
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................20149.00498342824
....................................................................................................................................................................................AAGCTAGCTTACCGAAGTTA.......................................................................................20147.004712400310
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................21145.00456823224
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTC.............................................................................................................................23143.0043414111013
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTC.......................................................................................22141.00414461233
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTT.......................................................................................23140.00401701895
droGri2
----G-CTGCATATTAAAACG---------------------------------AGCAACAAGCAGAAAGCAAATAGGATT-----GTGCAAGTT--TGTGCCG----------------CATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTCTTCA------------ACGTAAC-------------------ACGGCGCGTATAC---------------GCAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATG..............................................................................................................................22134668.00346681636218306
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGA.............................................................................................................................23126934.0026934206466288
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAT...............................................................................................................................21125994.0025994212524742
............................................................................................................................................CTTTGGTTATCTAGCTGTATGA.............................................................................................................................2211650.00165016455
............................................................................................................................................CTTTGGTTATCTAGCTGTAT...............................................................................................................................2011593.00159315903
............................................................................................................................................CTTTGGTTATCTAGCTGTATG..............................................................................................................................2111320.001320129822
...........................................................................................................................................TCTTTGGTTATCTAGCTGTA................................................................................................................................2011180.001180934246
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTA.......................................................................................2211100.001100943157
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTT........................................................................................211773.00773530243
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGT.............................................................................................................................231604.00604435169
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................................................241454.0045437579
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTA.......................................................................................231362.0036230557
...........................................................................................................................................TCTTTGGTTATCTAGCTGT.................................................................................................................................191345.0034525194
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTT........................................................................................221245.0024515986
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................................................241231.0023117853
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATT..............................................................................................................................221221.0022118041
.............................................................................................................................................TTTGGTTATCTAGCTGTATGA.............................................................................................................................21189.0089809
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTTA.......................................................................................21188.0088871
.............................................................................................................................................TTTGGTTATCTAGCTGTAT...............................................................................................................................19185.0085805
.............................................................................................................................................TTTGGTTATCTAGCTGTATG..............................................................................................................................20184.00846420
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGC.............................................................................................................................23181.00811566
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGG.............................................................................................................................23173.00733241
............................................................................................................................................CTTTGGTTATCTAGCTGTA................................................................................................................................19170.0070700
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGT.........................................................................................21149.00492524
............................................................................................................................................CTTTGGTTATCTAGCTGTATGT.............................................................................................................................22147.0047461
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGT.........................................................................................20147.00473116
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATA..............................................................................................................................22145.00453015
...................................................................................................................................................................................AAAGCTAGCTTACCGAAGTT........................................................................................20140.0040400
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................................................23135.0035350
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................................................24128.00281810
..............................................................................................................................................TTGGTTATCTAGCTGTAT...............................................................................................................................18125.0025241
...........................................................................................................................................TCTTTGGTTATCTAGCTG..................................................................................................................................18125.0025250
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................25125.00251510
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAA...............................................................................................................................21124.0024195
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATC..............................................................................................................................22122.0022814
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAG............................................................................................................................24121.0021183
..............................................................................................................................................TTGGTTATCTAGCTGTATG..............................................................................................................................19119.0019163
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAA......................................................................................23119.0019145
..............................................................................................................................................TTGGTTATCTAGCTGTATGA.............................................................................................................................20118.0018171
...........................................................................................................................................TCTTTGGTTATCTAGCTGTT................................................................................................................................20117.0017116
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTAT...............................................................................................................................22115.0015150
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAG..........................................................................................20114.0014104
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAT............................................................................................................................23113.0013130
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTT.............................................................................................................................23112.001275
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATGA.............................................................................................................................24112.0012120
............................................................................................................................................CTTTGGTTATCTAGCTGT.................................................................................................................................18112.0012120
............................................................................................................................................CTTTGGTTATCTAGCTGTATT..............................................................................................................................21111.0011110
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAG..........................................................................................19110.001073
...............................................................................................................................................TGGTTATCTAGCTGTATGA.............................................................................................................................19110.001091
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAA......................................................................................2419.00963
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAC...............................................................................................................................2118.00853
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTG.............................................................................................................................2318.00880
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTT.......................................................................................2217.00770
...............................................................................................................................................TGGTTATCTAGCTGTATG..............................................................................................................................1817.00770
..................................................................................................................................................................................TAAAGCTAGCTTACCGAAGTTAT......................................................................................2316.00633
..........................................................................................................................................GTCTTTGGTTATCTAGCTGTATG..............................................................................................................................2316.00660
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................................................2416.00633
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAC............................................................................................................................2416.00660
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTAT......................................................................................2415.00541
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGGC............................................................................................................................2414.00440
................................................................................................................................................GGTTATCTAGCTGTATGA.............................................................................................................................1814.00440
.............................................................................................................................................TTTGGTTATCTAGCTGTATGT.............................................................................................................................2113.00330
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGGCA...........................................................................................................................2513.00330
.....................................................................................................................................................................................AGCTAGCTTACCGAAGTTA.......................................................................................1913.00330
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATTC.............................................................................................................................2313.00330
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAG............................................................................................................................2313.00330
.................................................................................................................................................................................ATAAAGCTAGCTTACCGAAGTTT.......................................................................................2313.00330
....................................................................................................................................................................................AAGCTAGCTTACCGAAGTTA.......................................................................................2013.00330
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAC...........................................................................................................................2513.00330
............................................................................................................................................CTTTGGTTATCTAGCTGTATA..............................................................................................................................2113.00330
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGGCC...........................................................................................................................2513.00330
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAAA..............................................................................................................................2212.00220
............................................................................................................................................CTTTGGTTATCTAGCTGTATGG.............................................................................................................................2212.00220
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGCT............................................................................................................................2412.00220
.............................................................................................................................................TTTGGTTATCTAGCTGTA................................................................................................................................1812.00220
............................................................................................................................................CTTTGGTTATCTAGCTGTATGAAA...........................................................................................................................2412.00211
............................................................................................................................................CTTTGGTTATCTAGCTGTAA...............................................................................................................................2012.00220
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGCC............................................................................................................................2412.00220
................................................................................................................................................................................CATAAAGCTAGCTTACCGAAGTT........................................................................................2312.00220
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAGG...........................................................................................................................2512.00220
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAGA...........................................................................................................................2512.00220
............................................................................................................................................CTTTGGTTATCTAGCTGTT................................................................................................................................1912.00220
............................................................................................................................................CTTTGGTTATCTAGCTGTATGTT............................................................................................................................2312.00220
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATAT.............................................................................................................................2312.00220
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAAT..........................................................................................................................2612.00220
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAG...........................................................................................................................2512.00220
...........................................................................................................................................TCTTTGGTTATCTAGCTGTAG...............................................................................................................................2112.00211
............................................................................................................................................CTTTGGTTATCTAGCTGTATC..............................................................................................................................2112.00220
....................................................................................................................................................................................AAGCTAGCTTACCGAAGTT........................................................................................1912.00220
...........................................................................................................................................TCTTTGGTTATCTAGCTGTATCG.............................................................................................................................2312.00220

Generated: 10/20/2015 at 10:16 PM