ID:

der-mir-6-3

 Coordinate:

scaffold_4845:9748475-9748554 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.1 -30.8 -30.5

Flybase annnotation

pre_miRNA [Dere\mir-6-3-RM]; utr3 [utr3_minus_3613]; miRNA [Dere\miR-6-3-RA]

No Repeatable elements found

mature

  1. der-mir-6-3  scaffold_4845:9748481-9748502 -
  2. der-mir-6-2  scaffold_4845:9748633-9748654 -
  3. der-mir-6-1  scaffold_4845:9748768-9748789 -
star

Sense Strand Reads

CATTTGTGGCACGCATTTGTGTCACCTTGGTGCGAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTCGAAACTCTCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTCAGTGGTTTGCCAGTACATGAAATAGAAATATTT

*******************************************.((((..((((.(((((((((((((.((((.((((((((.................)))))))))))).))))))))))))).)))).))))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total M057

embryo

 M055

female body

 V040

embryo

 V108

head

 V107

male body
......................................................................................................TATCACAGTGGCTGTTCTTTTT........................................................ 22 0 3 10965.67 32897 27970 4900 5 16 6
......................................................................................................TATCACAGTGGCTGTTCTTTT......................................................... 21 0 3 2527.67 7583 6863 713 1 1 5
......................................................................................................TATCACAGTGGCTGTTCTTTTTT....................................................... 23 0 1 1065.00 1065 1030 35 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTT........................................................ 22 1 3 393.00 1179 1175 4 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 327.33 982 976 6 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 223.33 670 669 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTC........................................................ 22 1 3 198.00 594 585 9 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTT.......................................................... 20 0 3 195.67 587 505 75 1 4 2
.......................................................................................................ATCACAGTGGCTGTTCTTTTT........................................................ 21 0 3 131.67 395 25 370 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTT......................................................... 21 1 3 96.33 289 287 2 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTT......................................................... 21 1 3 78.33 235 235 0 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 67.00 201 201 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTT......................................................... 21 1 3 53.00 159 159 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 45.00 45 45 0 0 0 0
..........................................................AGGGAACGGTGGCTGATGATGTA................................................................................................... 23 0 1 44.00 44 8 8 28 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 39.33 118 112 5 1 0 0
......................................................................................................TATCACAGCGGCTGTTCTTTTT........................................................ 22 1 3 34.67 104 87 17 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 34.00 34 34 0 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 29.00 87 83 4 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTC......................................................... 21 1 3 26.00 78 77 1 0 0 0
......................................................................................................AATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 22.00 66 55 11 0 0 0
......................................................................................................TATCACAGTGGCTGCTCTTTTT........................................................ 22 1 3 21.33 64 57 2 5 0 0
......................................................................................................TATCACAGTGGCTTTTCTTTTT........................................................ 22 1 3 20.00 60 36 22 2 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTC....................................................... 23 1 3 19.00 57 56 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTA....................................................... 23 1 3 18.67 56 38 16 0 2 0
.......................................................................................................ATCACAGTGGCTGTTCTTTT......................................................... 20 0 3 17.33 52 11 41 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTTT......................................................... 21 1 3 17.33 52 52 0 0 0 0
......................................................................................................TATCTCAGTGGCTGTTCTTTTT........................................................ 22 1 3 16.67 50 50 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTC.......................................................... 20 1 3 16.33 49 48 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTGT........................................................ 22 1 3 15.33 46 20 26 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTTTT........................................................ 22 1 3 15.33 46 46 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTT........................................................... 19 0 3 14.33 43 30 10 1 1 1
......................................................................................................TATCACAGTGGCTGATCTTTTT........................................................ 22 1 3 14.00 42 42 0 0 0 0
......................................................................................................TATCACAGTGGCTGTCCTTTTT........................................................ 22 1 3 14.00 42 38 4 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 14.00 14 14 0 0 0 0
......................................................................................................TATCACCGTGGCTGTTCTTTTT........................................................ 22 1 3 12.67 38 2 36 0 0 0
..........................................................AGGGAACGGTGGCTGATGATGT.................................................................................................... 22 0 1 11.00 11 5 3 3 0 0
......................................................................................................TATCACAGTTGCTGTTCTTTTT........................................................ 22 1 3 10.67 32 17 14 1 0 0
........................................................................................................TCACAGTGGCTGTTCTTTTT........................................................ 20 0 3 10.67 32 9 23 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTT........................................................ 22 1 3 10.00 30 13 5 12 0 0
......................................................................................................TATCACAGTGGCTGTTTTTTTT........................................................ 22 1 3 9.67 29 20 5 4 0 0
......................................................................................................TGTTACAGTGGCTGTTCTTTTT........................................................ 22 2 3 9.67 29 29 0 0 0 0
.....................................................................................................CTATCACAGTGGCTGTTCTTTTT........................................................ 23 1 3 9.33 28 25 3 0 0 0
......................................................................................................TATCACAGTGGCTGTTCCTTTT........................................................ 22 1 3 9.33 28 21 6 1 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTT.......................................................... 20 1 3 9.00 27 27 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTT...................................................... 24 1 2 9.00 18 17 0 1 0 0
......................................................................................................TATCACAGTAGCTGTTCTTTTT........................................................ 22 1 3 8.33 25 13 2 10 0 0
......................................................................................................TATCACAGTGACTGTTCTTTTT........................................................ 22 1 3 8.00 24 12 4 8 0 0
......................................................................................................TATAACAGTGGCTGTTCTTTTT........................................................ 22 1 3 8.00 24 1 23 0 0 0
......................................................................................................TATCACAGTGGTTGTTCTTTTT........................................................ 22 1 3 7.67 23 12 11 0 0 0
......................................................................................................TATCACACTGGCTGTTCTTTTT........................................................ 22 1 3 7.67 23 12 11 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 7.33 22 22 0 0 0 0
......................................................................................................TATCACAGTGGCTGTGCTTTTT........................................................ 22 1 3 7.33 22 18 4 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTT.......................................................... 20 1 3 7.33 22 22 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCTT........................................................ 22 1 3 7.33 22 20 2 0 0 0
..........................................................ATGGAACGGTGGCTGATGATGTA................................................................................................... 23 1 1 7.00 7 7 0 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 7.00 21 20 1 0 0 0
......................................................................................................TATCACATTGGCTGTTCTTTTT........................................................ 22 1 3 6.67 20 11 9 0 0 0
......................................................................................................TATCATAGTGGCTGTTCTTTTT........................................................ 22 1 3 6.67 20 16 4 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTC........................................................ 22 2 3 6.33 19 19 0 0 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 6.00 18 17 1 0 0 0
......................................................................................................TATCACAGCGGCTGTTCTTTT......................................................... 21 1 3 6.00 18 17 1 0 0 0
......................................................................................................TACTACAGTGGCTGTTCTTTTT........................................................ 22 2 3 6.00 18 18 0 0 0 0
......................................................................................................TATCACAGTGGCTTTTCTTTT......................................................... 21 1 3 6.00 18 15 3 0 0 0
..........................................................AGGGAACGGTGGCTGATGATG..................................................................................................... 21 0 1 6.00 6 2 1 3 0 0
......................................................................................................CATCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 6.00 6 6 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCCTTTTT....................................................... 23 1 1 6.00 6 6 0 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTTT......................................................... 21 1 3 5.67 17 17 0 0 0 0
......................................................................................................TATCAGAGTGGCTGTTCTTTTT........................................................ 22 1 3 5.67 17 17 0 0 0 0
......................................................................................................TATCTCAGTGGCTGTTCTTTT......................................................... 21 1 3 5.67 17 17 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTA........................................................ 22 1 3 5.33 16 10 6 0 0 0
......................................................................................................TATCACAGAGGCTGTTCTTTTT........................................................ 22 1 3 5.33 16 5 11 0 0 0
......................................................................................................TATCACAGTCGCTGTTCTTTTT........................................................ 22 1 3 5.33 16 6 10 0 0 0
......................................................................................................TATCACAGTGGCCGTTCTTTTT........................................................ 22 1 3 5.33 16 11 4 1 0 0
......................................................................................................TATCACGGTGGCTGTTCTTTTT........................................................ 22 1 3 5.33 16 15 0 1 0 0
......................................................................................................TATCACAGTGGCTGATCTTTT......................................................... 21 1 3 5.00 15 15 0 0 0 0
......................................................................................................TATCGCAGTGGCTGTTCTTTTT........................................................ 22 1 3 5.00 15 14 1 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 5.00 5 5 0 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTTTTT....................................................... 22 0 1 5.00 5 1 4 0 0 0
......................................................................................................AATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 5.00 15 15 0 0 0 0
......................................................................................................TATCACAGTGGCTGCTCTTTT......................................................... 21 1 3 4.67 14 13 1 0 0 0
......................................................................................................TATCACAGTGGCTATTCTTTTT........................................................ 22 1 3 4.33 13 10 3 0 0 0
......................................................................................................TAACACAGTGGCTGTTCTTTTT........................................................ 22 1 3 4.00 12 12 0 0 0 0
......................................................................................................TATCACAGTTGCTGTTCTTTT......................................................... 21 1 3 4.00 12 7 5 0 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTTTTTT.................................................... 26 3 1 4.00 4 0 0 4 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTG...................................................... 24 0 1 4.00 4 2 2 0 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 4.00 4 4 0 0 0 0
......................................................................................................TATCACAATGGCTGTTCTTTTT........................................................ 22 1 3 3.67 11 11 0 0 0 0
......................................................................................................TATCACAGTGTCTGTTCTTTTT........................................................ 22 1 3 3.67 11 5 4 2 0 0
......................................................................................................TATCACAGTGGCTGTTCGTTTT........................................................ 22 1 3 3.67 11 11 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTGTT........................................................ 22 1 3 3.67 11 6 5 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTCTTT........................................................ 22 1 3 3.33 10 7 3 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTT.......................................................... 20 1 3 3.33 10 10 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTGTTTTT........................................................ 22 1 3 3.33 10 8 2 0 0 0
......................................................................................................TATCACAGGGGCTGTTCTTTTT........................................................ 22 1 3 3.33 10 6 4 0 0 0
......................................................................................................TATCACAGTGGCTGTCCTTTT......................................................... 21 1 3 3.00 9 9 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTT.......................................................... 20 1 3 3.00 9 9 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTTT..................................................... 25 1 1 3.00 3 3 0 0 0 0
......................................................................................................TATCACAGTAGCTGTTCTTTT......................................................... 21 1 3 3.00 9 8 0 1 0 0
......................................................................................................TATCACAGAGGCTGTTCTTTTTT....................................................... 23 1 1 3.00 3 2 1 0 0 0
......................................................................................................TATAACAGTGGCTGTTCTTTT......................................................... 21 1 3 3.00 9 0 8 0 1 0
......................................................................................................TATCACCGTGGCTGTTCTTTT......................................................... 21 1 3 3.00 9 1 8 0 0 0
......................................................................................................TATCACAGTGGCTGGGTTTTTTT....................................................... 23 3 1 3.00 3 0 0 3 0 0
......................................................................................................TATCACAGTGGCTGGTTTTTTTTTTTT................................................... 27 3 1 3.00 3 0 0 3 0 0
......................................................................................................TATCACAGTGGGTGTTCTTTTT........................................................ 22 1 3 3.00 9 8 0 1 0 0
......................................................................................................TATCACAGCGGCTGTTCTTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0 0
......................................................................................................AATCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTGTTT........................................................ 22 1 3 2.67 8 2 6 0 0 0
......................................................................................................TATCACAGTGGCTGTTTTTTT......................................................... 21 1 3 2.67 8 6 1 1 0 0
......................................................................................................TTTTACAGTGGCTGTTCTTTTT........................................................ 22 2 3 2.67 8 8 0 0 0 0
......................................................................................................TAGCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 2.67 8 2 6 0 0 0
......................................................................................................TATCACAGTGCCTGTTCTTTTT........................................................ 22 1 3 2.67 8 4 4 0 0 0
......................................................................................................TGTTACAGTGGCTGTTCTTTT......................................................... 21 2 3 2.67 8 8 0 0 0 0
......................................................................................................TATCAGAGTGGCTGTTCTTTT......................................................... 21 1 3 2.67 8 8 0 0 0 0
......................................................................................................TATCACATTGGCTGTTCTTTT......................................................... 21 1 3 2.33 7 5 2 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTT......................................................... 21 1 3 2.33 7 0 4 3 0 0
......................................................................................................TATCACAGTGGCTGTTCTCTT......................................................... 21 1 3 2.33 7 7 0 0 0 0
.....................................................................................................CTATCACAGTGGCTGTTCTTTT......................................................... 22 1 3 2.33 7 6 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTG......................................................... 21 1 3 2.33 7 3 4 0 0 0
......................................................................................................TATCACAGTCGCTGTTCTTTT......................................................... 21 1 3 2.33 7 3 3 1 0 0
......................................................................................................TATCACGGTGGCTGTTCTTTT......................................................... 21 1 3 2.33 7 4 0 3 0 0
......................................................................................................TATCACAGTGGCTGGTTTTTTT........................................................ 22 2 3 2.33 7 0 0 7 0 0
......................................................................................................TATCGCAGTGGCTGTTCTTTT......................................................... 21 1 3 2.33 7 6 1 0 0 0
......................................................................................................TATCACAGTGGCTGTACTTTTT........................................................ 22 1 3 2.00 6 4 2 0 0 0
......................................................................................................TATCTCAGTGGCTGTTCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTTTTTTTTTTT.................................................... 26 3 1 2.00 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTTT....................................................... 23 2 1 2.00 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTGCTCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGCTTTTTT....................................................... 23 2 1 2.00 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTGGGCTTTTTTTT..................................................... 25 3 1 2.00 2 0 0 2 0 0
.........................................................................................................CACAGTGGCTGTTCTTTTT........................................................ 19 0 3 2.00 6 5 1 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTT.......................................................... 19 0 3 2.00 6 0 6 0 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTTTT...................................................... 24 3 2 2.00 4 0 0 4 0 0
......................................................................................................TATCACAGTGGCTGTGTTTTTTTTTT.................................................... 26 3 1 2.00 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTGTTCTCTTTT....................................................... 23 1 1 2.00 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCCTTT......................................................... 21 1 3 2.00 6 5 1 0 0 0
..........................................................AGGGAACGGTGGCTGATGATGC.................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTTTTTTT................................................... 27 3 1 2.00 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCAGTTCTTTTT........................................................ 22 1 3 2.00 6 6 0 0 0 0
......................................................................................................TATCACAGTCGCTGTTCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCT......................................................... 21 1 3 1.67 5 5 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 1.67 5 5 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTCT........................................................ 22 1 3 1.67 5 5 0 0 0 0
.....................................................................................................GTATCACAGTGGCTGTTCTTTTT........................................................ 23 1 3 1.67 5 0 5 0 0 0
.....................................................................................................TTATCACAGTGGCTGTTCTTTTT........................................................ 23 1 3 1.67 5 0 5 0 0 0
....................................................................................................TCTATCACAGTGGCTGTTCTTTTT........................................................ 24 1 3 1.67 5 5 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTCC...................................................... 24 2 3 1.67 5 5 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTATT........................................................ 22 1 3 1.67 5 5 0 0 0 0
.......................................................................................................AGCACAGTGGCTGTTCTTTTT........................................................ 21 1 3 1.67 5 5 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGGTTTTT........................................................ 22 3 4 1.50 6 0 0 6 0 0
........................................................................................................TATCAGTGGCTGTTCTTTTT........................................................ 20 2 4 1.50 6 4 2 0 0 0
.....................................................................................................ATATCACAGTGGCTGTTCTTTTT........................................................ 23 0 3 1.33 4 2 2 0 0 0
......................................................................................................TATCATAGTGGCTGTTCTTTT......................................................... 21 1 3 1.33 4 3 1 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTC......................................................... 21 2 3 1.33 4 4 0 0 0 0
.....................................................................................................ATATCACAGTGGCTGTTCTTTT......................................................... 22 0 3 1.33 4 3 1 0 0 0
.....................................................................................................CGATCACAGTGGCTGTTCTTTT......................................................... 22 2 3 1.33 4 4 0 0 0 0
......................................................................................................TATCACAGTGGCGGTTCTTTTT........................................................ 22 1 3 1.33 4 2 2 0 0 0
......................................................................................................TATTACAGTGGCTGCTCTTTT......................................................... 21 2 3 1.33 4 4 0 0 0 0
......................................................................................................TATCACTGTGGCTGTTCTTTTT........................................................ 22 1 3 1.33 4 2 1 1 0 0
......................................................................................................TATCACAGAGGCTGTTCTTTT......................................................... 21 1 3 1.33 4 3 1 0 0 0
......................................................................................................TATCCCAGTGGCTGTTCTTTTT........................................................ 22 1 3 1.33 4 3 1 0 0 0
......................................................................................................TATCACAGTGGCCGTTCTTTT......................................................... 21 1 3 1.33 4 4 0 0 0 0
..........................................................................................................ACAGTGGCTGTTCTTTTT........................................................ 18 0 3 1.33 4 4 0 0 0 0
......................................................................................................TATCACAGTGGCTATTCTTTT......................................................... 21 1 3 1.33 4 4 0 0 0 0
......................................................................................................TATCACAGTGCCTGTTCTTTT......................................................... 21 1 3 1.33 4 1 3 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTC....................................................... 23 2 3 1.00 3 0 0 3 0 0
......................................................................................................TATCACGGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATTACAGTGGCTGCTCTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0 0
......................................................................................................TATCACAGTGGCCGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTCC........................................................ 22 2 3 1.00 3 3 0 0 0 0
...........................................................GGGAACGGTGGCTGATGATGTA................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
.................................................................................GTTCGAAACTCTCACAATTTA.............................................................................. 21 0 1 1.00 1 0 1 0 0 0
..........................................................AGGGAACGGTGGCTGATGGTGTA................................................................................................... 23 1 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGGGTTTTTT....................................................... 23 3 2 1.00 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTTTGT..................................................... 25 2 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTTGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
..........................................................AGGGAACGGTGGCGGATGATG..................................................................................................... 21 1 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
................................................................................................AATTTATATCACAGTGGCTGTTCTTTTT........................................................ 28 0 1 1.00 1 1 0 0 0 0
..........................................................AGGGAACGGTGGCTGAGGACGT.................................................................................................... 22 2 1 1.00 1 0 0 1 0 0
......................................................................................................TAGCACAGTGGCTGTTCTTTT......................................................... 21 1 3 1.00 3 2 1 0 0 0
..........................................................AGGGCACGGTGGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTA......................................................... 21 1 3 1.00 3 3 0 0 0 0
......................................................................................................TATCACAGTGGCTGGCCTTTTTTCT..................................................... 25 3 1 1.00 1 0 0 1 0 0
..........................................................AGGGAACGGTGGCTGATGATGTAT.................................................................................................. 24 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTTTT..................................................... 25 2 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGCGCTTTTTTTT..................................................... 25 3 1 1.00 1 0 0 1 0 0
..........................................................ATGGAACGGTGGCTGATGATGT.................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..........................................................AGGGAACGGTGGCTGGTGATGTT................................................................................................... 23 2 1 1.00 1 0 0 1 0 0
......................................................................................................TATTACAGCGGCTGTTCTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0 0
......................................................................................................TATCACAGAGGATGTTCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAATGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTT....................................................... 23 1 1 1.00 1 0 0 1 0 0
......................................................................................................TACCACAGCGGCTGTTCTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0 0
..........................................................ATGGAACGGTGGCTGATGATG..................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGTACTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
..........................................................AGGGAATGGTGGCTGGTGATGTA................................................................................................... 23 2 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGACTCTTTT....................................................... 23 3 1 1.00 1 0 0 1 0 0
.............................................................GAACGGTGGCTGATGATG..................................................................................................... 18 0 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGGCTTTTTTTTT.................................................... 26 3 1 1.00 1 0 0 1 0 0
..........................................................AGGGAACGGAGGCTTATTATG..................................................................................................... 21 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGCGCGTTTTT....................................................... 23 3 1 1.00 1 0 0 1 0 0
..........................................................AGGGAACGGTGGCTGATCATGT.................................................................................................... 22 1 1 1.00 1 0 0 1 0 0
..........................................................AGGGAACGGGGGCTGCTGATGTA................................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..........................................................AGGGAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
......................................................................................................TATCACAGAGGCTCTTCTTTTTTTTT.................................................... 26 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATTATAGTGGCTGTTCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCT............................................................ 18 0 3 1.00 3 1 2 0 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTTTTT..................................................... 25 3 1 1.00 1 0 0 1 0 0
.................................................................................GGTCGAAACTCTCACAATTTA.............................................................................. 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTTTGTT.................................................... 26 2 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTTTTT.................................................... 26 2 1 1.00 1 0 0 1 0 0
..........................................................AGGGAACGGTGGCTTATGATGTA................................................................................................... 23 1 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACCGCGGCTGTTCTTTTT........................................................ 22 2 3 1.00 3 0 3 0 0 0
......................................................................................................TATCACAGTGGCTGGTATTTTT........................................................ 22 2 3 1.00 3 0 0 3 0 0
......................................................................................................TATCGCAGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTTTTTTTTTT..................................................... 25 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTCTCT.......................................................... 20 1 3 1.00 3 2 0 1 0 0
......................................................................................................TATCACAGTGGTTGTTCTTTT......................................................... 21 1 3 1.00 3 1 1 1 0 0
.........................................................................................................CACAGTGGCTGTTCTTTTTTGT..................................................... 22 0 1 1.00 1 1 0 0 0 0
..........................................................AGGGAACGGTGGCACACGATGTA................................................................................................... 23 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTC......................................................... 21 2 3 1.00 3 3 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTGT......................................................... 21 1 3 1.00 3 1 2 0 0 0
......................................................................................................TATCACACTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
..........................................................AGGGAACGGGGGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGAGGCTGGTATTTTT........................................................ 22 3 3 1.00 3 0 0 3 0 0
..........................................................AGTGAACGGTGGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..........................................................AGGGAACGGCGGCTGTTGGTGT.................................................................................................... 22 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTTTTTTTTTT..................................................... 25 2 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTGGTTTTT....................................................... 23 2 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTAGCTGATCTTTTTT....................................................... 23 2 1 1.00 1 0 0 1 0 0
......................................................................................................TACTACAGTGGCTGTTCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0
..........................................................AGGGAACGGTGGCTGATGGTGG.................................................................................................... 22 2 1 1.00 1 0 0 1 0 0
.......................................................................................................ATAACAGTGGCTGTTCTTTTT........................................................ 21 1 3 1.00 3 3 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTTTT.................................................... 26 1 1 1.00 1 0 0 1 0 0
..........................................................AGGGAACGGTGGCTGATGATTT.................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..........................................................AGGGAACGGAGGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
......................................................................................................TATCACATTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTCGCTGTTGATTTTT....................................................... 23 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGGGGCTGTTCTTTT......................................................... 21 1 3 1.00 3 3 0 0 0 0
......................................................................................................TATCACAGTTGCTGTTATTTTTTTTTT................................................... 27 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTGTTTTTT....................................................... 23 1 1 1.00 1 0 0 1 0 0
........................................................................................................TCACAGTGGCTGGTCTTTTTT....................................................... 21 1 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGCGGCTGTTCTTTTC........................................................ 22 2 3 1.00 3 3 0 0 0 0
..........................................................AGGGAACGGTGGCTGATGA....................................................................................................... 19 0 1 1.00 1 0 0 1 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTGT........................................................ 22 2 3 1.00 3 3 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTCTCT..................................................... 25 3 1 1.00 1 0 0 1 0 0
..................................................................................................ATCGTATCACAGTGGCTGTTCTTTTT........................................................ 26 3 1 1.00 1 0 1 0 0 0
..........................................................AGGGAACGGTGGCTGATGATTTA................................................................................................... 23 1 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTCT..................................................... 25 1 1 1.00 1 1 0 0 0 0
.....................................................................................................CTATCACAGTGGCTGTTCTTTTTT....................................................... 24 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGTCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTTC....................................................... 23 2 3 1.00 3 3 0 0 0 0
......................................................................................................TATCACAGTGGCTCTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGAGAGTTCTTTTTT....................................................... 23 3 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGTGCTTTT......................................................... 21 1 3 1.00 3 2 1 0 0 0
..........................................................AGGGAACAGTGGCTGATGATG..................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTGTT....................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTGTCTTTTTTT.................................................... 26 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTTC....................................................... 23 2 3 1.00 3 3 0 0 0 0
..........................................................AGGGAACGGTGGCTGATGATGTAG.................................................................................................. 24 0 1 1.00 1 0 0 1 0 0
...........................................................GGGAACGGTGGCTGATGATGT.................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTC...................................................... 24 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGAGTTTTTTTGT..................................................... 25 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGATGGTCGTTTTT....................................................... 23 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTTT...................................................... 24 2 2 1.00 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTTTTTT................................................... 27 2 1 1.00 1 0 0 1 0 0
........................................................................................................TCACAGTGGCTGTTCTTTTTTGT..................................................... 23 0 1 1.00 1 1 0 0 0 0
..........................................................AGGGAACTGTGGCTGATGATGTAA.................................................................................................. 24 2 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTGGTTTTTTTTTTG.................................................. 28 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGGTTTTT......................................................... 21 3 5 0.80 4 0 0 4 0 0
......................................................................................................TATCACAGTGGCTGGTTTTT.......................................................... 20 2 4 0.75 3 0 0 3 0 0
......................................................................................................TATCACAGTGGCTGGGATTTTT........................................................ 22 3 4 0.75 3 0 0 3 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTC......................................................... 21 2 3 0.67 2 2 0 0 0 0
......................................................................................................TGTCACAGTGGCTGCTCTTTTT........................................................ 22 2 3 0.67 2 2 0 0 0 0
......................................................................................................TATCACAGTAGCTGTTCTTT.......................................................... 20 1 3 0.67 2 1 0 1 0 0
.......................................................................................................ATCACAGTGGCTGTTTTTTTT........................................................ 21 1 3 0.67 2 0 2 0 0 0
......................................................................................................TATCACAATGGCTGTTCTTTT......................................................... 21 1 3 0.67 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTCC....................................................... 23 2 3 0.67 2 2 0 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 0.67 2 2 0 0 0 0
.....................................................................................................CTAGCACAGTGGCTGTTCTTTTT........................................................ 23 2 3 0.67 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTAA...................................................... 24 2 3 0.67 2 0 2 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTT.......................................................... 20 1 3 0.67 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTCTTCTTTTT........................................................ 22 1 3 0.67 2 1 0 1 0 0
......................................................................................................TATCGCAGTGGCTGTTCTTT.......................................................... 20 1 3 0.67 2 1 1 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTTA....................................................... 23 2 3 0.67 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGTCCTTTTC........................................................ 22 2 3 0.67 2 2 0 0 0 0
........................................................................................................TCACAGTGGCTGTTCTTTT......................................................... 19 0 3 0.67 2 2 0 0 0 0
.......................................................................................................TTCACAGTGGCTGTTCTTTTT........................................................ 21 1 3 0.67 2 0 2 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTAT......................................................... 21 1 3 0.67 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCAGTTCTTTT......................................................... 21 1 3 0.67 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTGTTTT......................................................... 21 1 3 0.67 2 1 0 1 0 0
......................................................................................................TGTCACAGTGGATGTTCTTTTT........................................................ 22 2 3 0.67 2 2 0 0 0 0
.....................................................................................................CGATCACAGTGGCTGTTCTTTTT........................................................ 23 2 3 0.67 2 2 0 0 0 0
........................................................................................................TGACAGTGGCTGTTCTTTTT........................................................ 20 1 3 0.67 2 2 0 0 0 0
......................................................................................................TATCACAGTGACTGTTCTTTT......................................................... 21 1 3 0.67 2 1 0 1 0 0
......................................................................................................TATCACACTGGCTGTTCTTT.......................................................... 20 1 3 0.67 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGGTTTT......................................................... 21 3 6 0.67 4 0 0 4 0 0
......................................................................................................TATCACAGTGGCTGTTTTTT.......................................................... 20 1 3 0.67 2 2 0 0 0 0
......................................................................................................TATTACGGTGGCTGTTCTTTTT........................................................ 22 2 3 0.67 2 2 0 0 0 0

Anti-sense strand reads

GTAAACACCGTGCGTAAACACAGTGGAACCACGCTTTTAACTTTTAACAAGTTTTTCTTCCCTTGCCACCGACTACTACATCAAGCTTTGAGAGTGTTAAATATAGTGTCACCGACAAGAAAAAACAAACGGTTAGCTAGACGCAAGTCACCAAACGGTCATGTACTTTATCTTTATAAA

*****************************************.((((..((((.(((((((((((((.((((.((((((((.................)))))))))))).))))))))))))).)))).))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total V040

embryo

 V107

male body
.....................................................................................................TATAGCGTAACCAACAAGAAAA......................................................... 22 3 6 0.17 1 1 0
............................................................CCTTGCCACCGAGTAGTG...................................................................................................... 18 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4845:9748425-9748604 - der-mir-6-3 Known_mirbase CATTTGTGG-------CACGCATTTGTG---------TCACCTTG-GTGC--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTCAGTGGTTTGCCAGTA-------------------------CATGAAATAGAAA-TATTT
droYak3 2R:13624439-13624618 + dya-mir-6-3 Known_mirbase CATTTGTGG-------CCCGCATTTTTG---------TCACCTCA-GTGC--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCTCAA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTCAGTGGTGTGCCAGGA-------------------------CATGAAATAGAAA-TGCTT
droSec2 scaffold_1:13062904-13063083 - dse-mir-6-3 Known_mirbase CATTTGTGG-------CACGCATTTGTG---------TCACCTCA-GTGC--G---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGA-------------------------CATGAAACAGAAA-TATTT
droSim2 2r:16195443-16195622 - dsi-mir-6-3 Known_mirbase CATTTGTGG-------CACGCATTTGTG---------TCACCTCA-GTGC--G---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGA-------------------------CATGAAACAGAAA-TATTT
dm3 chr2R:15548171-15548350 - dme-mir-6-3 Known_mirbase CATTTGTGG-------CACGCATTTGTG---------TCACCTCA-GTGC--G---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGA-------------------------CATGAAACAGAAA-TATTT
droEug1 scf7180000409474:2397499-2397679 + CATCTGTGG-------CATGCATTTGTG---------TCACCTCA-ATGT--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAA-ATTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAATGGTTTACCAGGA-------------------------CATGAAATTGAAAACATTC
droBia1 scf7180000302143:3059089-3059269 - CATCTGTGG-------CACGCATTTGTG---------TCACCTCA-GTGC--G---------------------AAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAA-ACTCTCACAG-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTTAGTGGTTTTCCAGGA-------------------------CATGAAATGGAAAACATTC
droTak1 scf7180000415384:84701-84887 + CATCTGTGG-------CATGCATTTGTG---------TCAACTGA-ATGT--GAAAACT--------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTTGCTGATTTTCCAGGA-------------------------CATGAAATAGAAA-TTATT
droEle1 scf7180000491201:2013239-2013428 - CATACAGGG-------AACGGATTTGTG---------TCACCTCA-ATTT--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGAGGTTTTAAAA----------------TAAATAGCGCACATAAAACAGAAAATATTT
droRho1 scf7180000780066:74321-74500 + CATCCAGGA-------AACGCATTTGTG---------TCACCTCA-ATTT--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTTCAGTGGTTTTTCAGGA-------------------------CACGAAATTGAAA-ATATT
droFic1 scf7180000454039:847310-847490 - CATCTGCGG-------CACGCATTCGTG---------TCTCCTCA-ATGT--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGTTCAGTGGTTTTCCAGGA-------------------------CACGAAATAGAAAATATCC
droKik1 scf7180000302679:88616-88796 - CATCAGCGC-------GGCCTCAGTGTA---------TCATCTCT-GTTG--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAA-ATTCACACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTACCCAGGA-------------------------CACGAAATTGAAA-ATATA
droAna3 scaffold_13266:9732070-9732214 + dan-mir-6-3 Known_mirbase CATTTGTGG-------CACGCATTTGTG---------TCACGTTG-GTGGACA---------------------GAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT------ATTCGCATCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTC-----------------------------------------------------------
droBip1 scf7180000396427:875015-875192 + CATCTGTGG-------CACGAATTTGTG------GCATCACCTTG-GTGGA-C---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT------ATTCGCCTCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCTGGATTCTGAAAGGA---------------------------TAATATAGATA-CCTCC
dp5 3:12676787-12676922 - dps-mir-6-3 Known_mirbase CATCTCCGC----CGCCGCGCATTCGC-----------------------------------------------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG-TTTTGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGATC-----------------------------------------------------------
droPer2 scaffold_2:8906750-8906920 + dpe-mir-6-2 Known_mirbase CATCTCCGC----CGCCGCGCATT--------------CACC---------------------------------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG-TTTCGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGATC----------CAGGACTTCAGTTTCGAAAT-----------AT--AAAAAAAA-AGTGT
droWil2 scf2_1100000004514:1650988-1651124 - dwi-mir-6-3 Known_mirbase TATTTTTAGATTTCTCTGTTTTACCGTTTT----CTTTCATTT-----------------------------------------TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATC------------------------------------------------------------------
droVir3 scaffold_12875:4112887-4113040 + dvi-mir-6-3 Known_mirbase CAGCCGAAA--------GTACTTTTA--------TTATTAACTAACTTGT--GCAATTTGTTCACTTT--AATGACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GAC-CTTTGTACTC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAAT-----------------------------------------------------------------------
droMoj3 scaffold_6496:20935939-20936112 - dmo-mir-6-3 Known_mirbase C---TGTGA-------AATAAATCTTG---AATAGTGTTATCTTAAGTAT--GTGATTTGTTCAGTTTCAAATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AAT-TCATTTAATC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTGAG---------------------------------------------------------
droGri2 scaffold_5621:3503-3640 + dgr-mir-6-5 Known_mirbase CAACCGCTG-------CATAAATTCAC-----------CA------ATGC----------------------------------TATGTTTAACC-ACAGGGAACTGCTGCTGCTGATATACAAC-CAT-ATTTATACACGACTATATCACAGTGGCTGTTCTTTTTGGTTGC---ATCG--CCATTTGCAACGATTTGTCAGT---------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
CATTTGTGG-------CACGCATTTGTG---------TCACCTTG-GTGC--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTCAGTGGTTTGCCAGTA-------------------------CATGAAATAGAAA-TATTTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................22310965.6732897490027970056160
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................2132527.677583713686301510
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................2311065.00106535103000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..................................................................................223198.00594958500000
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................203195.675877550501240
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................213131.673953702500000
..................................................................................................AGGGAACGGTGGCTGATGATGTA................................................................................................................................23144.004488028000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTC...................................................................................21326.007817700000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.................................................................................23319.005715600000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................23318.6756163800020
..................................................................................................................................................ATCACAGTGGCTGTTCTTTT...................................................................................20317.3352411100000
.................................................................................................................................................TATCACAGTGGCTGTTCTTC....................................................................................20316.334904801000
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................19314.3343103001110
..................................................................................................AGGGAACGGTGGCTGATGATGT.................................................................................................................................22111.00113503000
...................................................................................................................................................TCACAGTGGCTGTTCTTTTT..................................................................................20310.673223900000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................................................2429.001801701000
..................................................................................................AGGGAACGGTGGCTGATGATG..................................................................................................................................2116.0061203000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................2235.331661000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.................................................................................2215.0054100000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG................................................................................2414.0042200000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTG...................................................................................2132.3374300000
....................................................................................................................................................CACAGTGGCTGTTCTTTTT..................................................................................1932.0061500000
..................................................................................................................................................ATCACAGTGGCTGTTCTTT....................................................................................1932.0066000000
..................................................................................................AGGGAACGGTGGCTGATGATGC.................................................................................................................................2212.0020200000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC................................................................................2431.6750500000
................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..................................................................................2331.3342200000
................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...................................................................................2231.3341300000
.....................................................................................................................................................ACAGTGGCTGTTCTTTTT..................................................................................1831.3340400000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTCC..................................................................................2231.0030300000
...................................................................................................GGGAACGGTGGCTGATGATGTA................................................................................................................................2211.0011000000
.........................................................................................................................GTTC-GAA-ACTCTCACAA-TTTA........................................................................................................2111.0011000000
..........................................................................................................................................AA-TTTATATCACAGTGGCTGTTCTTTTT..................................................................................2811.0010100000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTA...................................................................................2131.0030300000
..................................................................................................AGGGAACGGTGGCTGATGATGTAT...............................................................................................................................2411.0010100000
.....................................................................................................GAACGGTGGCTGATGATG..................................................................................................................................1811.0010001000
.................................................................................................................................................TATCACAGTGGCTGTTCT......................................................................................1831.0032100000
....................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT...............................................................................2211.0010100000
..................................................................................................AGGGAACGGTGGCTGATGA....................................................................................................................................1911.0010001000
..................................................................................................AGGGAACGGTGGCTGATGATGTAG...............................................................................................................................2411.0010001000
...................................................................................................GGGAACGGTGGCTGATGATGT.................................................................................................................................2111.0011000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC................................................................................2411.0010100000
...................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT...............................................................................2311.0010100000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.................................................................................2330.6720200000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA................................................................................2430.6722000000
...................................................................................................................................................TCACAGTGGCTGTTCTTTT...................................................................................1930.6720200000
droYak3
CATTTGTGG-------CCCGCATTTTTG---------TCACCTCA-GTGC--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCTCAA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTCAGTGGTGTGCCAGGA-------------------------CATGAAATAGAAA-TGCTTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................22388528.672655860234265335500120000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................21315870.00476100634753810080000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................23110507.0010507021050500000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..................................................................................2232566.67770000770000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................2031006.673020015300310010000
..................................................................................................AGGGAACGGTTGCTGATGATGTA................................................................................................................................231878.00878007761020000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTC...................................................................................213276.008280082800000000
..................................................................................................AGGGAACGGTTGCTGATGATGT.................................................................................................................................221177.0017701159170000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.................................................................................233165.004950149400000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTC....................................................................................203138.334150041500000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................................................242104.502090020900000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................21392.002760926700000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................23390.332710226900000000
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................19362.001860218400000000
..................................................................................................AGGGAACGGTTGCTGATGATG..................................................................................................................................21149.0049104080000000
.....................................................................................................................................................ACAGTGGCTGTTCTTTTT..................................................................................18347.001410114000000000
..................................................................................................AGGGAACGGTTGCTGATGATGC.................................................................................................................................22133.0033003300000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................22331.3394009400000000
...................................................................................................................................................TCACAGTGGCTGTTCTTTTT..................................................................................20322.3367006700000000
...............................................................................................AGAAGGGAACGGTTGCTGATGAT...................................................................................................................................23122.0022001920100000
....................................................................................................................................................CACAGTGGCTGTTCTTTTT..................................................................................19321.0063016200000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTG...................................................................................21316.6750005000000000
.................................................................................................AAGGGAACGGTTGCTGATGATGT.................................................................................................................................23115.0015001320000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC................................................................................24113.0013001300000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTT...................................................................................20312.6738023600000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.................................................................................22112.0012011100000000
....................................................................................................................................................CACAGTGGCTGTTCTTTTTT.................................................................................2019.00900900000000
...............................................................................................AGAAGGGAACGGTTGCTGATGA....................................................................................................................................2219.00900720000000
...............................................................................................AGAAGGGAACGGTTGCTGATG.....................................................................................................................................2119.00900720000000
..................................................................................................AGGGAACGGTTGCTGATGA....................................................................................................................................1918.00800710000000
.................................................................................................................................................TATCACAGTGGCTGTTCT......................................................................................1837.3322012100000000
.....................................................................................................................................................ACAGTGGCTGTTCTTTTTT.................................................................................1917.00700700000000
.................................................................................................AAGGGAACGGTTGCTGATGATGTA................................................................................................................................2416.00600420000000
................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...................................................................................2235.6717001700000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..................................................................................2235.6717001700000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..................................................................................2134.6714001400000000
..................................................................................................AGGGAACGGTTGCTGATGAT...................................................................................................................................2014.00400400000000
...................................................................................................................................................TCACAGTGGCTGTTCTTTTTT.................................................................................2114.00400400000000
..................................................................................................AGGGAACGGTTGCTGATGATGTT................................................................................................................................2314.00400400000000
...............................................................................................AGAAGGGAACGGTTGCTGATGAC...................................................................................................................................2313.00300300000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTTT................................................................................2323.00600600000000
droSec2
CATTTGTGG-------CACGCATTTGTG---------TCACCTCA-GTGC--G---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGA-------------------------CATGAAACAGAAA-TATTTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................22327140.338142117131478922772
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................2138065.33241962271023821138
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................2031417.004251233419035
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................231502.00502614941
..................................................................................................AGGGAACGGTTGCTGATGATGTA................................................................................................................................231262.002621422424
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................193259.677793075719
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................233126.33379203689
.....................................................................................................................................................ACAGTGGCTGTTCTTTTT..................................................................................183112.00336003342
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................21392.0027614701281
.................................................................................................................................................TATCACAGTGGCTGTTCT......................................................................................18367.33202101965
..................................................................................................AGGGAACGGTTGCTGATGATGT.................................................................................................................................22135.003500350
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................22332.339720941
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..................................................................................22329.008710851
...................................................................................................................................................TCACAGTGGCTGTTCTTTTT..................................................................................20319.6759100481
..................................................................................................AGGGAACGGTTGCTGATGATG..................................................................................................................................21115.001500150
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA................................................................................24314.004200411
..................................................................................................................................................ATCACAGTGGCTGTTCTTTT...................................................................................20311.3334230110
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.................................................................................23311.003310320
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..................................................................................2237.332220200
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................................................2427.001400140
....................................................................................................................................................CACAGTGGCTGTTCTTTTT..................................................................................1936.331920170
...................................................................................................................................................TCACAGTGGCTGTTCTTTT...................................................................................1935.331620140
.................................................................................................................................................TATCACAGTGGCTGTTCTTTA...................................................................................2134.331300130
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG................................................................................2414.0040040
.................................................................................................AAGGGAACGGTTGCTGATGATGTA................................................................................................................................2414.0040040
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.................................................................................2214.0041030
..................................................................................................AGGGAACGGTTGCTGATGAT...................................................................................................................................2014.0040130
..................................................................................................AGGGAACGGTTGCTGATGATGTAA...............................................................................................................................2414.0040040
.................................................................................................................................................TATCACAGTGGCTGTTCTTTC...................................................................................2133.671100110
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.................................................................................2333.331000100
..................................................................................................AGGGAACGGTTGCTGATGATGTAG...............................................................................................................................2413.0030030
..................................................................................................................................................ATCACAGTGGCTGTTCTTT....................................................................................1932.3375020
....................................................................................................................................................CACAGTGGCTGTTCTTTT...................................................................................1832.3371060
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA................................................................................2412.0020020
.................................................................................................................................................TATCACAGTGGCTGTTCTTTG...................................................................................2132.0062040
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC................................................................................2411.0010010
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT...............................................................................2511.0010010
.................................................................................................AAGGGAACGGTTGCTGATGATG..................................................................................................................................2211.0010010
..............................................................................................................................................TTATATCACAGTGGCTGTTCT......................................................................................2111.0010010
...................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG................................................................................2211.0010010
.................................................................................................................................................TATCACAGTGGCTGTTCTTA....................................................................................2031.0030030
.................................................................................................................................................TATCACAGTGGCTGTTCTTC....................................................................................2031.0030021
................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...................................................................................2231.0030030
..................................................................................................AGGGAACGGTTGCTGATGATGTAT...............................................................................................................................2411.0010010
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA.................................................................................2231.0030030
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA................................................................................2430.6720020
droSim2
CATTTGTGG-------CACGCATTTGTG---------TCACCTCA-GTGC--G---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGA-------------------------CATGAAACAGAAA-TATTTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................223816.00244800797972722282537553601315000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................213162.6748810811199451247312154104000
..................................................................................................AGGGAACGGTTGCTGATGATGTA................................................................................................................................231137.00137001710092131307624000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................23196.0096007680244100001000
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................19361.3318400212713562641000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................20350.671520033123571614952001000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................23350.671520001009061000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA................................................................................24343.331300000007852000000000
.................................................................................................................................................TATCACAGTGGCTGTTCT......................................................................................18339.001170000610514001000000
..................................................................................................AGGGAACGGTTGCTGATGATG..................................................................................................................................21125.0025003000005301301000
..................................................................................................AGGGAACGGTTGCTGATGATGT.................................................................................................................................22122.0022001100115101200000
........................................................................................................................................................GTGGCTGTTCTTTTT..................................................................................15318.67560000000027281000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................21318.3355000550000000000000
.................................................................................................................................................TATCACAGTGGCTGT.........................................................................................15315.00450000000012302010000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.................................................................................23313.33400000002119000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA................................................................................24312.67380000002117000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................2237.3322000000128101000000
..................................................................................................AGGGAACGGTTGCTGATGAT...................................................................................................................................2014.00400200000100100000
..................................................................................................AGGGAACGGTTGCTGATGATGTAT...............................................................................................................................2413.00300000000300000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTT...................................................................................2032.67800053000000000000
.................................................................................................................................................TATCACAGTGGCTGTT........................................................................................1632.67800000010052000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................................................2422.50500500000000000000
.........................................................................................................................GTTC-GAA-ACTCTCACAA-TTTA........................................................................................................2112.00200100000010000000
..................................................................................................AGGGAACGGTTGCTGATGATGTAA...............................................................................................................................2412.00200000000000101000
.......................................ACCTCA-GTGC--G---------------------AAAATTG........................................................................................................................................................................1812.00200200000000000000
.................................................................................................AAGGGAACGGTTGCTGATGATGTA................................................................................................................................2412.00200000000000200000
....................................................................................................................................................................................................TTGCCAGGA-------------------------CATGAAACAGAAA-TATTT2712.00200000000200000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA...............................................................................2521.50300000030000000000
...................................................................................................................................................TCACAGTGGCTGTTCTTTTT..................................................................................2031.33400030010000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTA...................................................................................2131.33400000022000000000
.........................................................................................................................GTTC-GAA-ACTCTCACAA-TT..........................................................................................................1911.00100100000000000000
.......................................................................................................................................................................TGTTTGGCAATCGATCTACG..............................................................2011.00100000000010000000
..................................................................................................AGGGAACGGTTGCTGATGATGTT................................................................................................................................2311.00100000000000100000
..................................................................................................AGGGAACGGTTGCTGATGATGTAGT..............................................................................................................................2511.00100000000000100000
.................................................................................................AAGGGAACGGTTGCTGATGATG..................................................................................................................................2211.00100000000010000000
.........................................................................................................................GTTC-GAA-ACTCTCACAA-TTT.........................................................................................................2011.00100100000000000000
..................................................................................................AGGGAACGGTTGCTGATGG....................................................................................................................................1911.00100100000000000000
.................................................................................................AAGGGAACGGTTGCTGATGAT...................................................................................................................................2111.00100000000010000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA................................................................................2411.00100000001000000000
...............................................................................................AGAAGGGAACGGTTGCTGATGA....................................................................................................................................2211.00100000000000100000
......................................................................................................AACGGTTGCTGATGATGTA................................................................................................................................1911.00100000000000100000
...............................................................................................AGAAGGGAACGGTTGCTGATG.....................................................................................................................................2111.00100000000000100000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA.................................................................................2230.67200000002000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTG...................................................................................2130.67200020000000000000
dm3
CATTTGTGG-------CACGCATTTGTG---------TCACCTCA-GTGC--G---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGA-------------------------CATGAAACAGAAA-TATTTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................................................AGGGAACGGTTGCTGATGATGTA................................................................................................................................23138897.00388970000303324285800100000000000000000000034501000000000000000000000000000000000000000000007583125013510238892101100040020582660971910041171150047519810900010002000000000000000002811721412901213020000051000000000000120100000000000000000000400000000000000000000120200000000000100000006832010000000010000340113020000000000000100001100012016730901140001001000002032821126632202101190510100
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................2316947.00694700005072175351212800000000000000000000000000000000000000000000000100000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010021647202570854621801290000000000000000000000000000000000000001010100000000001247961920100002000000000000000010001010100000100
..................................................................................................AGGGAACGGTTGCTGATGATGT.................................................................................................................................2216352.006352000000233921000000000000000000000000362000000000000000000000000000000000000000000000062261479338000010000000000140000458910040127400100000000000000000000036749517271720000200000000000000000001000000000000000000000000000000000010000000000000000000000000000014600000010000000000000000000000000000000000000000002883800800001000000000005000010000000040000000
..................................................................................................AGGGAACGGTTGCTGATGATG..................................................................................................................................2114948.004948000000231000000000000000000000000039670000000000000000000000000000000000000000000000871012124500000000000100020000204000800800000000000000000000000031207162293000000000000000000000000000000000000000000000000000100000000000000000000000000000000000003300000000000000000000000000000000000000000001001003101000200000000000000001000000000000010000010
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
..................................................................................................AGGGAACGGTTGCTGATGAT...................................................................................................................................2013286.003286000000020000000000000000000000000029730000000000000000000000000000000000000000000000320041500000000000000000000060005000000000000000000000000000021186000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000201100100000000000000000000000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................................................242585.501171000001011412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000076132109070500300000000000000000000000000000000000000000000000000000007627500000000000000000000000000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
..................................................................................................AGGGAACGGTTGCTGATGA....................................................................................................................................191212.002120000000000000000000000000000000000102000000000000000000000000000000000000000000000010100130000000000000000000001000300200000000000000000000000001612000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000049200000000000000000000000000000000000000000
.................................................................................................AAGGGAACGGTTGCTGATGATGTA................................................................................................................................241193.001930000003100000000000000000000000000000000000000000000000000000000000000000000000001811260000000000000000000016000200100000000000000000000000011117000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000129000000000000000000000000000000000000000000
...................................................................................................GGGAACGGTTGCTGATGATGTA................................................................................................................................221167.001670000001400000000000000000000000000100000000000000000000000000000000000000000000005840029000000000000000603007220002008000000000000000000000000054000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.................................................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
..................................................................................................AGGGAACGGTTGCTGATGATGTAA...............................................................................................................................241134.0013400000023000000000000000000000000002000000000000000000000000000000000000000000000028510270000000000000000000014800020012000000000000000000000000256000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
..................................................................................................AGGGAACGGTTGCTGATGATGTC................................................................................................................................231127.001270000000000000000000000000000000000000000000000000000000000000000000000000000000003102500000000000000020000040000003000000000000000000000000047420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
..................................................................................................AGGGAACGGTTGCTGATGATGTAG...............................................................................................................................24196.009600000001000000000000000000000000001000000000000000000000000000000000000000000000019903300000000000000050000300000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049000000000000000000000000000000000000000000
..................................................................................................AGGGAACGGTTGCTGATGATGTT................................................................................................................................23186.0086000000330000000000000000000000000000000000000000000000000000000000000000000000000250150000000000000002000028000100200000000000000000000000001120020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000016000000000000000000010000000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
..................................................................................................AGGGAACGGTTGCTGATGATGTG................................................................................................................................23171.007100000061000000000000000000000000000000000000000000000000000000000000000000000000010301300000000000000010000250000017000000000000000000000000023300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..................................................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
.................................................................................................AAGGGAACGGTTGCTGATGATGT.................................................................................................................................23164.006400000000000000000000000000000000000000000000000000000000000000000000000000000000040003000000000000000000000000000000000000000000000000000000601900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000
..................................................................................................AGGGAACGGTTGCTGATGATGTAT...............................................................................................................................24151.005100000013000000000000000000000000002000000000000000000000000000000000000000000000011100300000000000000000000000001003000000000000000000000000143600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000010000000
.................................................................................................................................................TATCACAGTGGCTGTTCT......................................................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
.....................................................................................................................................................ACAGTGGCTGTTCTTTTT..................................................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG................................................................................24144.004400000006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261100000000000000000000000000000000000000000
..................................................................................................AGGGAACGGTTGCTGATG.....................................................................................................................................18144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000003000100000000000000000000010000002000000000000000000000000785000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA................................................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA................................................................................24133.00330000001450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000
.................................................................................................AAGGGAACGGTTGCTGATGATG..................................................................................................................................22130.00300000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
...................................................................................................GGGAACGGTTGCTGATGATGT.................................................................................................................................21127.0027000000000000000000000000000000000010000000000000000000000000000000000000000000000800030000000000000000000000000300500000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
..................................................................................................AGGGAACGGTTGCTGATGATGTAAA..............................................................................................................................25125.0025000000100000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000003100000100000000000000000000000002202000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..................................................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
..................................................................................................AGGGAACGGTTGCTGATGATGC.................................................................................................................................22122.0022000000100000000000000000000000000000000000000000000000000000000000000000000000000300010000000000001000000001000000000000000000000000000000000511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC................................................................................24121.00210000001022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000014100000000000000000000000000000000000000000
.........................................................................................................................GTTT-GAA-ACTCTCACAA-TTTA........................................................................................................21121.0021000000000000000000000000000000000010000000000000000000000000000000000000000000000700060000000000000000000004000100000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.................................................................................22121.0021000000040100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000009400000000000000000000000000000000000000000
droEug1
CATCTGTGG-------CATGCATTTGTG---------TCACCTCA-ATGT--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAA-ATTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAATGGTTTACCAGGA-------------------------CATGAAATTGAAAACATTCSizeHit CountTotal NormTotal
No Reads
droBia1
CATCTGTGG-------CACGCATTTGTG---------TCACCTCA-GTGC--G---------------------AAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAA-ACTCTCACAG-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTTAGTGGTTTTCCAGGA-------------------------CATGAAATGGAAAACATTCSizeHit CountTotal NormTotal
No Reads
droTak1
CATCTGTGG-------CATGCATTTGTG---------TCAACTGA-ATGT--GAAAACT--------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTTGCTGATTTTCCAGGA-------------------------CATGAAATAGAAA-TTATTSizeHit CountTotal NormTotal
No Reads
droEle1
CATACAGGG-------AACGGATTTGTG---------TCACCTCA-ATTT--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGAGGTTTTAAAA----------------TAAATAGCGCACATAAAACAGAAAATATTTSizeHit CountTotal NormTotal
No Reads
droRho1
CATCCAGGA-------AACGCATTTGTG---------TCACCTCA-ATTT--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTTCAGTGGTTTTTCAGGA-------------------------CACGAAATTGAAA-ATATTSizeHit CountTotal NormTotal
No Reads
droFic1
CATCTGCGG-------CACGCATTCGTG---------TCTCCTCA-ATGT--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGTTCAGTGGTTTTCCAGGA-------------------------CACGAAATAGAAAATATCCSizeHit CountTotal NormTotal
No Reads
droKik1
CATCAGCGC-------GGCCTCAGTGTA---------TCATCTCT-GTTG--G---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAA-ATTCACACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTACCCAGGA-------------------------CACGAAATTGAAA-ATATASizeHit CountTotal NormTotal
No Reads
droAna3
CATTTGTGG-------CACGCATTTGTG---------TCACGTTG-GTGGACA---------------------GAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT------ATTCGCATCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTC-----------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................22315043.3345130367447520074
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................2133049.3391489790392028
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................2312039.002039920300000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..................................................................................223462.001386013860000
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................203276.00828267920082
..................................................................................................AGGGAACGGTCGCTGCTGATGTA................................................................................................................................23165.006514320001
.................................................................................................................................................TATCACAGTGGCTGTTCTTTC...................................................................................21357.6717301720001
.................................................................................................................................................TATCACAGTGGCTGTTCTTC....................................................................................20337.0011101110000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................21335.6710740670000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.................................................................................23334.6710401040000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................23333.671013980000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................................................24132.00320320000
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................19317.33528390023
..................................................................................................AGGGAACGGTCGCTGCTGATGT.................................................................................................................................22110.0010091000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.................................................................................2219.009450000
....................................................................................................................................................CACAGTGGCTGTTCTTTTT..................................................................................1938.67260260000
...................................................................................................................................................TCACAGTGGCTGTTCTTTTT..................................................................................2038.00245190000
..................................................................................................AGGGAACGGTCGCTGCTGATGC.................................................................................................................................2217.007070000
.....................................................................................................................................................ACAGTGGCTGTTCTTTTT..................................................................................1836.00180180000
.................................................................................................................................................TATCACAGTGGCTGTTCT......................................................................................1836.00180180000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTT...................................................................................2036.00187110000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................2235.33160150001
.................................................................................................................................................TATCACAGTGGCTGTTCTTTG...................................................................................2134.33130130000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..................................................................................2233.3310190000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA................................................................................2433.009170010
..................................................................................................................................................ATCACAGTGGCTGTTCTTT....................................................................................1932.006330000
...................................................................................................................................................TCACAGTGGCTGTTCTTTT...................................................................................1931.675050000
................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...................................................................................2231.675050000
..................................................................................................AGGGAACGGTCGCTGCTGATGTAA...............................................................................................................................2411.001010000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC................................................................................2421.002020000
..................................................................................................AGGGAACGGTCGCTGCTGAT...................................................................................................................................2011.001010000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG................................................................................2411.001010000
.................................................................................................................................................TATCACAGTGGCTGTTCTC.....................................................................................1931.003030000
....................................................................................................................................................CACAGTGGCTGTTCTTTTTTT................................................................................2111.001010000
.....................................................................................................................................................ACAGTGGCTGTTCTTTTTT.................................................................................1911.001010000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..................................................................................2131.003030000
....................................................................................................................................................CACAGTGGCTGTTCTTTTTT.................................................................................2011.001010000
droBip1
CATCTGTGG-------CACGAATTTGTG------GCATCACCTTG-GTGGA-C---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT------ATTCGCCTCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCTGGATTCTGAAAGGA---------------------------TAATATAGATA-CCTCCSizeHit CountTotal NormTotal
No Reads
dp5
CATCTCCGC----CGCCGCGCATTCGC-----------------------------------------------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG-TTTTGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGATC-----------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................22338201.331146040681510770178307000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................2136091.0018273012371700029205000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................2314325.00432505542662002000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..................................................................................2231760.0052800452724000000
..................................................................................................AGGGAACGGTTGCTGCTGATGTA................................................................................................................................231431.00431015280013500001
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................203403.001209013410741000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................213194.005820505770000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTC...................................................................................213169.33508025060000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.................................................................................233159.004770124641000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................233100.003000222770001000
.................................................................................................................................................TATCACAGTGGCTGTTCTTC....................................................................................20362.00186001842000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................................................24257.50115021121000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTT...................................................................................20340.001200106140000000
................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...................................................................................22330.339107840000000
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................19327.6783024590000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................22324.677406680000000
..................................................................................................AGGGAACGGTTGCTGCTGATGT.................................................................................................................................22119.001901120600000
...................................................................................................................................................TCACAGTGGCTGTTCTTTTT..................................................................................20317.0051032190000000
................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..................................................................................23313.674108330000000
..................................................................................................AGGGAACGGTTGCTGCTGATG..................................................................................................................................21112.00120060600000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.................................................................................22112.00120570000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC................................................................................24310.673206260000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..................................................................................22310.333109220000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTT....................................................................................1938.332502230000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTG...................................................................................2138.002401230000000
....................................................................................................................................................CACAGTGGCTGTTCTTTTT..................................................................................1937.6723010130000000
.................................................................................................................................................TATCACAGTGGCTGTTCT......................................................................................1837.002108130000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC................................................................................2417.0070070000000
....................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT...............................................................................2216.0060060000000
................................................................................................................................................ATATCACAGTGGCTGTTCTTT....................................................................................2135.331600160000000
.....................................................................................................................................................ACAGTGGCTGTTCTTTTT..................................................................................1835.001503120000000
..................................................................................................AGGGAACGGTTGCTGCTGATGTAA...............................................................................................................................2414.0040010300000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA................................................................................2434.001202100000000
..................................................................................................AGGGAACGGTTGCTGCTGATGTT................................................................................................................................2314.0040020200000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.................................................................................2333.0090180000000
..................................................................................................AGGGAACGGTTGCTGCTGATGTC................................................................................................................................2313.0030020100000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGTA..............................................................................2612.0020020000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.................................................................................2332.0060230001000
..................................................................................................AGGGAACGGTTGCTGCTGATGC.................................................................................................................................2212.0020020000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..................................................................................2132.0060150000000
................................................................................................................................................ATATCACAGTGGCTGTTCTTTTTT.................................................................................2412.0020020000000
...................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT...............................................................................2312.0020020000000
..................................................................................................................................................ATCACAGTGGCTGTTCTT.....................................................................................1831.6750500000000
.................................................................................................................................................TATCACAGTGGCTGTTCTC.....................................................................................1931.6750050000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTTC...............................................................................2521.5030030000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTCC..................................................................................2231.3340040000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.................................................................................2231.3340310000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...............................................................................2531.3340040000000
droPer2
CATCTCCGC----CGCCGCGCATT--------------CACC---------------------------------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG-TTTCGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGATC----------CAGGACTTCAGTTTCGAAAT-----------AT--AAAAAAAA-AGTGTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................223146.00438941300115
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................21325.00758620005
..................................................................................................AGGGAACGGTTGCTGCTGATGTA................................................................................................................................23115.00154011000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................21314.67440440000
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................2035.0015680001
..................................................................................................AGGGAACGGTTGCTGCTGATG..................................................................................................................................2114.004102010
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................2314.004220000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTT...................................................................................2033.009090000
..................................................................................................AGGGAACGGTTGCTGCTGATGTAA...............................................................................................................................2412.002002000
..................................................................................................AGGGAACGGTTGCTGCTGATGT.................................................................................................................................2211.001001000
..................................................................................................AGGGAACGGTTGCTGCTGATGTAGT..............................................................................................................................2511.001001000
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................1931.003030000
...................................................................................................................................................TCACAGTGGCTGTTCTTTTT..................................................................................2030.672020000
.................................................................................................................................................TATCACAGTGGCTGTTCTTC....................................................................................2030.331100000
....................................................................................................................................................CACAGTGGCTGTTCTTTTT..................................................................................1930.331010000
................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...................................................................................2230.331010000
...................................................................................................................................................TCACAGTGGCTGTTCTTTT...................................................................................1930.331010000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................2230.331010000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................2330.331010000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..................................................................................2230.331010000
droWil2
TATTTTTAGATTTCTCTGTTTTACCGTTTT----CTTTCATTT-----------------------------------------TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATC------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................22335155.671054670180701036555
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................2138217.002465103441243042
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................2311572.001572026015451
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................2031168.673506059534411
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................2331099.333298010032880
..................................................................................................AGGGAACGGTTGCTGTTGATGTA................................................................................................................................231841.008410008410
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................193320.009600609504
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA................................................................................243217.006510506460
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................223189.675690405650
.................................................................................................................................................TATCACAGTGGCTGTTCT......................................................................................183128.333850303820
..................................................................................................AGGGAACGGTTGCTGTTGATGT.................................................................................................................................22185.0085000850
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................21370.3321101430680
..................................................................................................AGGGAACGGTTGCTGTTGATG..................................................................................................................................21154.0054000540
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA...............................................................................25346.001380001380
.....................................................................................................................................................ACAGTGGCTGTTCTTTTT..................................................................................18345.001350101340
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.................................................................................23341.671250001250
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..................................................................................22340.331210101200
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.................................................................................23332.3397000970
..................................................................................................AGGGAACGGTTGCTGTTGATGTAA...............................................................................................................................24131.0031000310
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA................................................................................24130.0030000300
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..................................................................................22318.6756000560
..................................................................................................................................................ATCACAGTGGCTGTTCTTTT...................................................................................20316.00480310170
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................................................24210.5021010200
...................................................................................................................................................TCACAGTGGCTGTTCTTTTT..................................................................................20310.33310120190
....................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT...............................................................................22110.0010000100
.................................................................................................................................................TATCACAGTGGCTGTTCTTTA...................................................................................2139.3328010270
................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...................................................................................2238.6726000260
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA...............................................................................2518.00800080
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA................................................................................2437.3322000220
..................................................................................................AGGGAACGGTTGCTGTTGA....................................................................................................................................1917.00700070
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.................................................................................2217.00703040
..................................................................................................AGGGAACGGTTGCTGTTGATGTAAA..............................................................................................................................2516.00600060
....................................................................................................................................................CACAGTGGCTGTTCTTTTT..................................................................................1936.0018000180
...............................................................................................AGAAGGGAACGGTTGCTGTTGA....................................................................................................................................2215.00500050
................................................................................................................................................ATATCACAGTGGCTGTTCTTT....................................................................................2134.6714000140
.................................................................................................................................................TATCACAGTGGCTGTTCTTTC...................................................................................2134.3313000130
.................................................................................................AAGGGAACGGTTGCTGTTGATG..................................................................................................................................2214.00400040
..................................................................................................AGGGAACGGTTGCTGTTGAT...................................................................................................................................2014.00400040
.....................................................................................................................................................ACAGTGGCTGTTCTTTTTT.................................................................................1914.00400040
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC................................................................................2433.6711000110
.................................................................................................................................................TATCACAGTGGCTGTTCTTTAA..................................................................................2243.2513000130
.................................................................................................AAGGGAACGGTTGCTGTTGATGTA................................................................................................................................2413.00300030
...................................................................................................................................................TCACAGTGGCTGTTCTTTTTT.................................................................................2113.00301020
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG................................................................................2413.00301020
..................................................................................................................................................ATCACAGTGGCTGTTCTTT....................................................................................1932.67807010
.....................................................................................................................................................ACAGTGGCTGTTCTTTTTA.................................................................................1932.67800080
...............................................................................................AGAAGGGAACGGTTGCTGTTGAT...................................................................................................................................2312.00200020
...................................................................................................................................................TCACAGTGGCTGTTCTTTT...................................................................................1932.00600060
......................................CATTT-----------------------------------------TTTGTTTAAAAAGA.......................................................................................................................................................1912.00200020
.........................................................................................................................GTAT-ACCATTTTGTTTAACAATA........................................................................................................2312.00200020
...................................................................................................GGGAACGGTTGCTGTTGATGTA................................................................................................................................2212.00200020
..................................................................................................AGGGAACGGTTGCTGTTGATGTG................................................................................................................................2312.00200020
....................................................................................................................................................CACAGTGGCTGTTCTTTT...................................................................................1831.67500050
................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..................................................................................2331.33402020
................................................................................................................................................ATATCACAGTGGCTGTTCTT.....................................................................................2031.33400040
...................................................................................................................................................TCACAGTGGCTGTTCTTTTTAA................................................................................2231.33400040
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAC...............................................................................2511.00100010
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT...............................................................................2511.00100010
..................................................................................................AGGGAACGGTTGCTGTTGATGTAT...............................................................................................................................2411.00100010
....................................................................................................................................................CACAGTGGCTGTTCTTTTTTG................................................................................2111.00100010
..................................................................................................AGGGAACGGTTGCTGTTGATGTAG...............................................................................................................................2411.00100010
..........................................................................................................................................AACAATATATCACAGTGGCTGTTCTTTT...................................................................................2811.00100010
.....................................TCATTT-----------------------------------------TTTGTTTAAAAAGA.......................................................................................................................................................2011.00100010
....................................................................................................................................................CACAGTGGCTGTTCTTTTTTAA...............................................................................2211.00100010
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC................................................................................2411.00100010
..................................................................................................AGGGAACGGTTGCTGTTGATGTT................................................................................................................................2311.00100010
..................................................................................................AGGGAACGGTTGCTGTTGATGTGT...............................................................................................................................2411.00100010
..................................................................................................AGGGAACGGTTGCTGTTGATGC.................................................................................................................................2211.00100010
.......................................................................................................ACGGTTGCTGTTGATGTA................................................................................................................................1811.00100010
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC...............................................................................2531.00300030
.................................................................................................................................................TATCACAGTGGCTGTTCTTTG...................................................................................2131.00300030
droVir3
CAGCCGAAA--------GTACTTTTA--------TTATTAACTAACTTGT--GCAATTTGTTCACTTT--AATGACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GAC-CTTTGTACTC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAAT-----------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
..................................................................................................AGAGAACGTTCGCTGTTGATGTA................................................................................................................................23114177.0014177001161000000001212500000000000000010085130602073140069101934372554485419368238212483151470000027027024290220301677245259282338
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................2314063.00406300014990000000000000000000000000000000000000268161105918516791160102701046300025020000042413180000202151591868180
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.................................................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
..................................................................................................AGAGAACGTTCGCTGTTGATG..................................................................................................................................2111078.0010780002800000000020000000000000000002010610000794555949451014779523433280001433601000611551000002722221615
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC................................................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..................................................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
..................................................................................................AGAGAACGTTCGCTGTTGATGT.................................................................................................................................221402.004020002400000000212000000000000000000205318180000113219311111212010007400000098570000005119141117
..................................................................................................AGAGAACGTTCGCTGTTGATGTAA...............................................................................................................................241238.0023800050000000001000000000000000000002034000081612333132502000000000007552000000494181416
.................................................................................................AAGAGAACGTTCGCTGTTGATGTA................................................................................................................................241197.00197000200000000010000000000000000001001420000174943310211000100021000003528000000201260
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC................................................................................241130.0013000041000000000000000000000000000000000000000213425611104620002400000012200000001120
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...............................................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................................................24268.50137000370000000000000000000000000000000000000004432574946410003000000221600000065625
..................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-.............................................................................................................................25166.006600010000000000000000000000000000000001000011253202111000000010000012900000062528
..................................................................................................AGAGAACGTTCGCTGTTGAT...................................................................................................................................20164.006400000000000000000000000000000000000011000000300051523410001310000020700000024252
..................................................................................................AGAGAACGTTCGCTGTTGATGTC................................................................................................................................23158.0058000000000000000000000000000000000000010000318272100110100000120000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
.........................................................................................................................GT-C-GAC-CTTTGTACTC-TTTA........................................................................................................20145.004500040000000010000000000000000000601431600001110000000000000010000000500000000001
.................................................................................................AAGAGAACGTTCGCTGTTGATG..................................................................................................................................22142.00420002000000000000000000000000000000100000000750154131320000300000002100000001000
..................................................................................................AGAGAACGTTCGCTGTTGA....................................................................................................................................19240.5081000000000000010000000000000000000000000000221195342060111000400000001500000041000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTC...................................................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC...............................................................................25132.00320008000000000000000000000000000000000000000001410210212000900000000100000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA................................................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.................................................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
.................................................................................................AAGAGAACGTTCGCTGTTGATGT.................................................................................................................................23127.00270002000000000000000000000000000000001200000320001010100000220000011500000000111
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
.................................................................................................................................................TATCACAGTGGCTGTTCT......................................................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
.................................................................................................................................................TATCACAGTGGCTGTTCTTC....................................................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..................................................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
..................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-A-...........................................................................................................................26114.00140000000000000000000000000000000000000000001210000000001000000000001100000023110
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
..................................................................................................AGAGAACGTTCGCTGTTGATGC.................................................................................................................................22111.00110007000000001000000000000000000000000000000000000000000000010000010100000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA................................................................................2419.0090000000000000000000000000000000000000000000001000121100000000000011100000000000
..................................................................................................AGAGAACGTTCGCTGTTGATGTAG...............................................................................................................................2419.0090000000000000100000000000000000000000000000100020100000000000000000210000000010
.................................................................................................AAGAGAACGTTCGCTGTTGAT...................................................................................................................................2119.0090000000000000000000000000000000000000000000000110100002000200000000000000000101
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA................................................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
..................................................................................................AGAGAACGTTCGCTGTTGATGTT................................................................................................................................2318.0080000000000000000000000000000000000000000000110000020000000030000000100000000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.................................................................................2218.0080003000000000000000000000000000000000000000010001000000000100000010100000000000
................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..................................................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
.....................................................................................................................................................ACAGTGGCTGTTCTTTTT..................................................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
..................................................................................................AGAGAACGTTCGCTGTTGATGTG................................................................................................................................2317.0070000000000000000000000000000000000000000001320000000000000010000000000000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC................................................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG................................................................................2416.0060001000000000000000000000000000000000000000000002020000000000000000000000001000
.................................................................................................................................................TATCACAGTGGCTGTTC.......................................................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.................................................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
...............................................................................................................................................TATATCACAGTGGCTGTTCTTT....................................................................................2225.00100001000000000000000000000000000000000000000110000000100000000000000200000011200
..................................................................................................AGAGAACGTTCGCTGTTGATGTAT...............................................................................................................................2415.0050000000000000000000000000000000010000000000200000000000000100000000000000010000
.................................................................................................AAGAGAACGTTCGCTGTTGATGTAA...............................................................................................................................2515.0050000000000000000000000000000000000000000000100000000000000000000000200000001001
...................................................................................................................................................TCACAGTGGCTGTTCTTTTT..................................................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCCC..............................................................................2624.5090002000000000000000000000000000000000000000100000002000000400000000000000000000
..................................................................................................AGAGAACGTTCGCTGTTGATC..................................................................................................................................2124.5090001000000000000000000000000000000000000000110010100100000210000000000000000000
................................................................................................GAAGAGAACGTTCGCTGTTGATG..................................................................................................................................2314.0040000000000000000000000000000000000000000000100000100010000000000000000000000010
.....................................................................................................GAACGTTCGCTGTTGATGTA................................................................................................................................2014.0040000000000000000000000000000000000001000000200000000000000000000000000000010000
.......................................................................................................ACGTTCGCTGTTGATGTA................................................................................................................................1814.0040000000000000000000000000000000000000000000210000000000000000000000100000000000
..................................................................................................AGAGAACGTTCGCTGTTGATGA.................................................................................................................................2214.0040000000000000000000000000000000000000000000120000000000000010000000000000000000
....................................................................................................AGAACGTTCGCTGTTGATGTA................................................................................................................................2114.0040001000000000100000000000000000000001000000000000000000000000000000100000000000
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA................................................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC................................................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
..................................................................................................................................................ATCACAGTGGCTGTTCTTTT...................................................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
.............................................................................CTCGTCAATTGTTTAAAAGGA.......................................................................................................................................................2113.0030000000000000000000000000000000000000000000100000000000000000000000100000001000
droMoj3
C---TGTGA-------AATAAATCTTG---AATAGTGTTATCTTAAGTAT--GTGATTTGTTCAGTTTCAAATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AAT-TCATTTAATC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTGAG---------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................223175659.67526979301005269462
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................21371420.67214262141002142425
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.................................................................................23120128.00201280000201271
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.................................................................................2339565.33286966000286900
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................2035461.67163853000163802
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..................................................................................2234979.00149371000149360
.................................................................................................................................................TATCACAGTGGCTGTTCTTTC...................................................................................2131153.673461000034610
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC................................................................................243749.332248000022480
.................................................................................................................................................TATCACAGTGGCTGTTCTTC....................................................................................203612.001836000018360
..................................................................................................AGAGAACGTTCGCTGTTGATGT.................................................................................................................................221586.005860204003820
..................................................................................................AGAGAACGTTCGCTGTTGATGTA................................................................................................................................231565.005651146004180
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.................................................................................221463.0046300004630
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC................................................................................241402.0040200004020
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..................................................................................213393.671181200011790
.................................................................................................................................................TATCACAGTGGCTGTTCTT.....................................................................................193276.6783001008281
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................................................233230.3369100006910
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................................................242181.5036320003610
..................................................................................................AGAGAACGTTCGCTGTTGATG..................................................................................................................................211171.00171064001070
..................................................................................................................................................ATCACAGTGGCTGTTCTTTT...................................................................................203132.3339710003960
..................................................................................................AGAGAACGTTCGCTGTTGATGC.................................................................................................................................221129.0012900001290
.................................................................................................AAGAGAACGTTCGCTGTTGATGT.................................................................................................................................231116.0011604500710
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..................................................................................22389.6726900002690
...................................................................................................................................................TCACAGTGGCTGTTCTTTTT..................................................................................20389.6726900002690
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC...............................................................................25170.00700000700
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.................................................................................23368.6720600002060
....................................................................................................................................................CACAGTGGCTGTTCTTTTT..................................................................................19365.3319600001960
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...............................................................................25353.6716100001610
.....................................................................................................................................................ACAGTGGCTGTTCTTTTT..................................................................................18347.6714300001430
.................................................................................................AAGAGAACGTTCGCTGTTGATG..................................................................................................................................22147.004701900280
.................................................................................................................................................TATCACAGTGGCTGTTCTTTG...................................................................................21346.6714000001400
...................................................................................................................................................TCACAGTGGCTGTTCTTTT...................................................................................19331.33940000940
................................................................................................................................................ATATCACAGTGGCTGTTCTTT....................................................................................21331.33940000940
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..................................................................................22328.67860000860
....................................................................................................................................................CACAGTGGCTGTTCTTTT...................................................................................18328.33850000850
.................................................................................................................................................TATCACAGTGGCTGTTCT......................................................................................18326.33790000790
..................................................................................................AGAGAACGTTCGCTGTTGATGTAA...............................................................................................................................24124.00240600180
.................................................................................................AAGAGAACGTTCGCTGTTGATGC.................................................................................................................................23122.00220000220
..................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.................................................................................22316.00480000480
..................................................................................................AGAGAACGTTCGCTGTTGATGTT................................................................................................................................23115.0015080070
.................................................................................................................................................TATCACAGTGGCTGTTCTC.....................................................................................19314.67440000440
...................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG................................................................................22113.00130000130
....................................................................................................................................................CACAGTGGCTGTTCTTTTTT.................................................................................20112.00120000120
...................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT...............................................................................23111.00110000110
..................................................................................................................................................ATCACAGTGGCTGTTCTTT....................................................................................19311.00330000330
droGri2
CAACCGCTG-------CATAAATTCAC-----------CA------ATGC----------------------------------TATGTTTAACC-ACAGGGAACTGCTGCTGCTGATATACAAC-CAT-ATTTATACACGACTATATCACAGTGGCTGTTCTTTTTGGTTGC---ATCG--CCATTTGCAACGATTTGTCAGT---------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..................................................................................2262.5015105
.................................................................................................................................................TATCACAGTGGCTGTTCTTTT...................................................................................2161.831129
.................................................................................................................................................TATCACAGTGGCTGTTCTTT....................................................................................2060.33202

Generated: 10/20/2015 at 06:52 PM