ID:

der-mir-318

 Coordinate:

scaffold_4770:15383908-15383975 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

5pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.6 -27.5 -27.4

Flybase annnotation

pre_miRNA [Dere\mir-318-RM]; utr5 [utr5_plus_10186]; miRNA [Dere\miR-318-RA]

No Repeatable elements found

Sense Strand Reads

TATCCGAGTGCTAGGCGTGTATCCTGGCTGAAGAGGTCCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAACATGAAAGTCACACCTATATGTAAAAAAATCTAT

*****************************************.((((((.((((((((((((.(((.((((((((..(((..........)))..)))))))).))).))))))))))..))))))))..*************************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 GSM1528801

follicle cells		 V107

male body		 V108

head

 V060

head

 V040

embryo
............................................................................................TCACTGGGCTTTGTTTATCTCA...................................................... 22 0 1 93046.00 93046 92641 144 238 19 2 2
............................................................................................TCACTGGGCTTTGTTTATCTC....................................................... 21 0 1 11122.00 11122 11031 72 18 1 0 0
.............................................................................................CACTGGGCTTTGTTTATCTCA...................................................... 21 0 1 7522.00 7522 7522 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCT........................................................ 20 0 1 3717.00 3717 3680 29 3 3 2 0
.............................................................................................CACTGGGCTTTGTTTATCTC....................................................... 20 0 1 879.00 879 879 0 0 0 0 0
............................................................................................TCACTGGGATTTGTTTATCTCA...................................................... 22 1 1 392.00 392 392 0 0 0 0 0
............................................................................................TCAATGGGCTTTGTTTATCTCA...................................................... 22 1 1 383.00 383 382 0 1 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTGA...................................................... 22 1 1 340.00 340 340 0 0 0 0 0
..............................................................................................ACTGGGCTTTGTTTATCTCA...................................................... 20 0 1 335.00 335 335 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTCAA..................................................... 23 1 1 304.00 304 302 0 1 1 0 0
.............................................................................................CACTGGGCTTTGTTTATCT........................................................ 19 0 1 273.00 273 273 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTCT...................................................... 22 1 1 265.00 265 264 0 0 1 0 0
............................................................................................TCACTGGCCTTTGTTTATCTCA...................................................... 22 1 1 194.00 194 194 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTCAT..................................................... 23 0 1 165.00 165 122 43 0 0 0 0
............................................................................................TCACTGGGCTTTTTTTATCTCA...................................................... 22 1 1 165.00 165 165 0 0 0 0 0
............................................................................................CCACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 138.00 138 138 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATC......................................................... 19 0 1 138.00 138 128 10 0 0 0 0
............................................................................................ACACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 130.00 130 130 0 0 0 0 0
............................................................................................TCACTGGGCTTTGGTTATCTCA...................................................... 22 1 1 126.00 126 120 6 0 0 0 0
............................................................................................TGACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 121.00 121 120 0 1 0 0 0
............................................................................................TTACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 114.00 114 114 0 0 0 0 0
............................................................................................TCGCTGGGCTTTGTTTATCTCA...................................................... 22 1 1 113.00 113 112 0 1 0 0 0
............................................................................................TCACTTGGCTTTGTTTATCTCA...................................................... 22 1 1 104.00 104 103 0 0 1 0 0
............................................................................................GCACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 102.00 102 101 0 1 0 0 0
........................................................GGATACACACAGTTCAGTTTTG.......................................................................................... 22 0 1 98.00 98 98 0 0 0 0 0
...........................................................................................CTCACTGGGCTTTGTTTATCTCA...................................................... 23 1 1 95.00 95 95 0 0 0 0 0
............................................................................................TCACCGGGCTTTGTTTATCTCA...................................................... 22 1 1 87.00 87 87 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCGCA...................................................... 22 1 1 85.00 85 85 0 0 0 0 0
...........................................................................................TTCACTGGGCTTTGTTTATCTCA...................................................... 23 1 1 82.00 82 82 0 0 0 0 0
............................................................................................TCACTGGGCTTCGTTTATCTCA...................................................... 22 1 1 70.00 70 70 0 0 0 0 0
............................................................................................TCACTGGGCTTGGTTTATCTCA...................................................... 22 1 1 62.00 62 62 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTT....................................................... 21 1 1 60.00 60 60 0 0 0 0 0
............................................................................................TCACTGGGCCTTGTTTATCTCA...................................................... 22 1 1 56.00 56 56 0 0 0 0 0
...........................................................................................GTCACTGGGCTTTGTTTATCTCA...................................................... 23 1 1 54.00 54 54 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTTA...................................................... 22 1 1 52.00 52 52 0 0 0 0 0
............................................................................................TCACTGGACTTTGTTTATCTCA...................................................... 22 1 1 51.00 51 51 0 0 0 0 0
............................................................................................TCACTGGTCTTTGTTTATCTCA...................................................... 22 1 1 50.00 50 50 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTG....................................................... 21 1 1 49.00 49 49 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTACCTCA...................................................... 22 1 1 47.00 47 47 0 0 0 0 0
...............................................................................................CTGGGCTTTGTTTATCTCA...................................................... 19 0 1 46.00 46 46 0 0 0 0 0
...........................................................................................ATCACTGGGCTTTGTTTATCTCA...................................................... 23 0 1 45.00 45 45 0 0 0 0 0
............................................................................................TCACTGGGCTTTGCTTATCTCA...................................................... 22 1 2 45.00 90 89 1 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCCCA...................................................... 22 1 1 44.00 44 44 0 0 0 0 0
............................................................................................TCACTAGGCTTTGTTTATCTCA...................................................... 22 1 1 44.00 44 43 0 0 0 1 0
............................................................................................TCACTGGGCTTTGTTCATCTCA...................................................... 22 1 1 44.00 44 44 0 0 0 0 0
............................................................................................TCACTGAGCTTTGTTTATCTCA...................................................... 22 1 1 44.00 44 44 0 0 0 0 0
............................................................................................TCACTGGGATTTGTTTATCTC....................................................... 21 1 1 43.00 43 41 2 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTCAG..................................................... 23 1 1 40.00 40 40 0 0 0 0 0
............................................................................................TCATTGGGCTTTGTTTATCTCA...................................................... 22 1 1 40.00 40 40 0 0 0 0 0
............................................................................................TCACTCGGCTTTGTTTATCTCA...................................................... 22 1 1 39.00 39 39 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTAATCTCA...................................................... 22 1 1 39.00 39 39 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATGTCA...................................................... 22 1 1 39.00 39 39 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTGTATCTCA...................................................... 22 1 1 38.00 38 38 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTGATCTCA...................................................... 22 1 1 37.00 37 37 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTCTATCTCA...................................................... 22 1 1 37.00 37 37 0 0 0 0 0
............................................................................................TCACTGGGCGTTGTTTATCTCA...................................................... 22 1 1 37.00 37 36 1 0 0 0 0
............................................................................................TCACTGGGTTTTGTTTATCTCA...................................................... 22 1 1 37.00 37 36 0 1 0 0 0
..............................................................................................ACTGGGCTTTGTTTATCTC....................................................... 19 0 1 36.00 36 36 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTGTCTCA...................................................... 22 1 1 36.00 36 36 0 0 0 0 0
............................................................................................TCAATGGGCTTTGTTTATCTC....................................................... 21 1 1 35.00 35 35 0 0 0 0 0
............................................................................................TCAACGGGCTTTGTTTATCTCA...................................................... 22 2 1 35.00 35 35 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATCTCAA..................................................... 22 1 1 34.00 34 34 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATATCA...................................................... 21 1 1 32.00 32 32 0 0 0 0 0
............................................................................................TCACTGGGCTCTGTTTATCTCA...................................................... 22 1 1 30.00 30 30 0 0 0 0 0
............................................................................................TTACTGGGCTTTGTTTATCTC....................................................... 21 1 1 29.00 29 29 0 0 0 0 0
............................................................................................TCACTGCGCTTTGTTTATCTCA...................................................... 22 1 1 28.00 28 28 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTCTCTCA...................................................... 22 1 1 28.00 28 2 26 0 0 0 0
............................................................................................TCAATGGGCTTTTTTTATCTCA...................................................... 22 2 1 27.00 27 27 0 0 0 0 0
............................................................................................TCACTGGGCTTTATTTATCTCA...................................................... 22 1 1 26.00 26 26 0 0 0 0 0
............................................................................................TCACTGGCCTTTGTTTATCTC....................................................... 21 1 1 25.00 25 25 0 0 0 0 0
............................................................................................TCACTGGGCTTTTTTTATCTC....................................................... 21 1 1 24.00 24 24 0 0 0 0 0
............................................................................................TCACTGTGCTTTGTTTATCTCA...................................................... 22 1 1 24.00 24 23 0 1 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTCAC..................................................... 23 1 1 24.00 24 24 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTAT.......................................................... 18 0 1 23.00 23 23 0 0 0 0 0
............................................................................................TCACTGGGATTTGTTTATCGCA...................................................... 22 2 1 23.00 23 23 0 0 0 0 0
.............................................................................................CACTGGGATTTGTTTATCTCA...................................................... 21 1 1 22.00 22 22 0 0 0 0 0
............................................................................................TCACTGGGCTTTGATTATCTCA...................................................... 22 1 1 21.00 21 21 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTCC...................................................... 22 1 1 20.00 20 20 0 0 0 0 0
............................................................................................TGACTGGGCTTTGTTTATCTC....................................................... 21 1 1 20.00 20 20 0 0 0 0 0
............................................................................................TCACTGGGCTTAGTTTATCTCA...................................................... 22 1 1 19.00 19 19 0 0 0 0 0
................................................................................................TGGGCTTTGTTTATCTCA...................................................... 18 0 1 19.00 19 19 0 0 0 0 0
............................................................................................TCAGTGGGCTTTGTTTATCTCA...................................................... 22 1 1 19.00 19 19 0 0 0 0 0
............................................................................................TCTCTGGGCTTTGTTTATCTCA...................................................... 22 1 1 19.00 19 19 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATTTCA...................................................... 22 1 1 19.00 19 19 0 0 0 0 0
.............................................................................................TACTGGGCTTTGTTTATCTCA...................................................... 21 1 1 18.00 18 18 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTCG...................................................... 22 1 2 17.50 35 35 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATCTCT...................................................... 21 1 1 16.00 16 16 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTCTCTC....................................................... 21 1 1 16.00 16 0 16 0 0 0 0
.............................................................................................CGCTGGGCTTTGTTTATCTCA...................................................... 21 1 1 16.00 16 16 0 0 0 0 0
............................................................................................ACACTGGGCTTTGTTTATCTC....................................................... 21 1 1 15.00 15 15 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTATATCTCA...................................................... 22 1 1 15.00 15 15 0 0 0 0 0
............................................................................................TCACGGGGCTTTGTTTATCTCA...................................................... 22 1 1 15.00 15 15 0 0 0 0 0
............................................................................................TCACTGGGGTTTGTTTATCTCA...................................................... 22 1 1 14.00 14 14 0 0 0 0 0
............................................................................................GCACTGGGCTTTGTTTATCTC....................................................... 21 1 1 14.00 14 14 0 0 0 0 0
............................................................................................CCACTGGGCTTTGTTTATCTC....................................................... 21 1 1 14.00 14 14 0 0 0 0 0
.............................................................................................CACTGGCCTTTGTTTATCTCA...................................................... 21 1 1 14.00 14 14 0 0 0 0 0
.............................................................................................CACTGGACTTTGTTTATCTCA...................................................... 21 1 1 13.00 13 13 0 0 0 0 0
............................................................................................TCCCTGGGCTTTGTTTATCTCA...................................................... 22 1 1 13.00 13 12 0 1 0 0 0
.............................................................................................CACTGGGCTTTGTTTATCTCG...................................................... 21 1 2 12.50 25 25 0 0 0 0 0
............................................................................................TCGCTGGGCTTTGTTTATCTC....................................................... 21 1 1 12.00 12 12 0 0 0 0 0
.............................................................................................CACTGGGCTTTGGTTATCTCA...................................................... 21 1 1 12.00 12 12 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCGC....................................................... 21 1 1 12.00 12 12 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCA........................................................ 20 1 1 11.00 11 11 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATCTCAT..................................................... 22 0 1 11.00 11 11 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTTTCTCA...................................................... 21 1 1 11.00 11 11 0 0 0 0 0
............................................................................................TCACTGGCCTTTGTTTATCT........................................................ 20 1 1 11.00 11 11 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTGTCTC....................................................... 21 1 1 11.00 11 11 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTAACTCA...................................................... 22 1 1 10.00 10 10 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTCATT.................................................... 24 1 1 10.00 10 4 6 0 0 0 0
............................................................................................TCAATGGGCTTTGTTTATCT........................................................ 20 1 1 10.00 10 10 0 0 0 0 0
............................................................................................TAACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 10.00 10 10 0 0 0 0 0
............................................................................................TCACTGGGCTTTGGTTATCTC....................................................... 21 1 2 10.00 20 17 2 0 0 1 0
............................................................................................TCACTGGGATTTGTTTATCT........................................................ 20 1 1 10.00 10 10 0 0 0 0 0
............................................................................................TCACTTGGCTTTGTTTATCTC....................................................... 21 1 1 9.00 9 9 0 0 0 0 0
............................................................................................CCACTGGGCTTTGTTTATCT........................................................ 20 1 1 9.00 9 9 0 0 0 0 0
............................................................................................TCACTGGGCTTTTTTTATCT........................................................ 20 1 1 9.00 9 9 0 0 0 0 0
............................................................................................TCACTGGGCTTCGTTTATCTC....................................................... 21 1 1 9.00 9 9 0 0 0 0 0
.............................................................................................CACTGGGTTTTGTTTATCTCA...................................................... 21 1 1 9.00 9 9 0 0 0 0 0
............................................................................................TCACTGGGCTATGTTTATCTCA...................................................... 22 1 1 9.00 9 9 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATC......................................................... 18 0 1 8.00 8 8 0 0 0 0 0
.............................................................................................CTCTGGGCTTTGTTTATCTCA...................................................... 21 1 1 8.00 8 8 0 0 0 0 0
............................................................................................TCACTGGGCTTTCTTTATCTCA...................................................... 22 1 1 8.00 8 8 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTGTATCTCA...................................................... 21 1 1 8.00 8 8 0 0 0 0 0
............................................................................................TCACCGGGCTTTGTTTATCTC....................................................... 21 1 1 8.00 8 8 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATCGCA...................................................... 21 1 1 8.00 8 8 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTACCTC....................................................... 21 1 1 8.00 8 8 0 0 0 0 0
............................................................................................TCACTAGGCTTTGTTTATCTC....................................................... 21 1 1 8.00 8 8 0 0 0 0 0
.............................................................................................CACTCGGCTTTGTTTATCTCA...................................................... 21 1 1 7.00 7 7 0 0 0 0 0
............................................................................................TCACTGGGATATGTTTATCTCA...................................................... 22 2 1 7.00 7 7 0 0 0 0 0
............................................................................................TCAATGGGCTTTTTTTATCTC....................................................... 21 2 1 7.00 7 7 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTCTCTCAT..................................................... 23 1 1 7.00 7 0 7 0 0 0 0
............................................................................................TCAATGGGCTTTGTTTAACTCA...................................................... 22 2 1 7.00 7 7 0 0 0 0 0
...........................................................................................TTCACTGGGCTTTGTTTATCTC....................................................... 22 1 1 7.00 7 7 0 0 0 0 0
.............................................................................................CACTGGGCTTTTTTTATCTCA...................................................... 21 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................CTCACTGGGCTTTGTTTATCTC....................................................... 22 1 1 7.00 7 7 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTAA...................................................... 22 1 1 7.00 7 5 1 0 1 0 0
............................................................................................TCACTGGGCATTGTTTATCTCA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0
............................................................................................TCAATTGGCTTTGTTTATCTCA...................................................... 22 2 1 7.00 7 7 0 0 0 0 0
..........................................................................................ATTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 7.00 7 7 0 0 0 0 0
............................................................................................TCACTGGGCTTTTGTTATCTCA...................................................... 22 2 1 7.00 7 7 0 0 0 0 0
.............................................................................................CACTGGGCCTTGTTTATCTCA...................................................... 21 1 1 7.00 7 7 0 0 0 0 0
............................................................................................TCACTGGGCTTGGTTTATCTC....................................................... 21 1 1 6.00 6 6 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTACCTCT...................................................... 22 2 1 6.00 6 6 0 0 0 0 0
.............................................................................................CACTGGTCTTTGTTTATCTCA...................................................... 21 1 1 6.00 6 6 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATATCA...................................................... 22 1 1 6.00 6 6 0 0 0 0 0
.............................................................................................CACTGTGCTTTGTTTATCTCA...................................................... 21 1 1 6.00 6 6 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCACA...................................................... 22 1 1 6.00 6 6 0 0 0 0 0
...........................................................................................ATCACTGGGCTTTGTTTATCTC....................................................... 22 0 1 6.00 6 6 0 0 0 0 0
............................................................................................TGACTGGGCTTTGTTTATCT........................................................ 20 1 1 6.00 6 6 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTTTCTCA...................................................... 22 1 1 6.00 6 6 0 0 0 0 0
.............................................................................................CACTGAGCTTTGTTTATCTCA...................................................... 21 1 1 6.00 6 6 0 0 0 0 0
............................................................................................GCACTGGGCTTTGTTTATCT........................................................ 20 1 1 6.00 6 6 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCCC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
............................................................................................ACACTGGGCTTTGTTTATCT........................................................ 20 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTGATCTC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCAATGGGATTTGTTTATCTCA...................................................... 22 2 1 5.00 5 5 0 0 0 0 0
..........................................................................................GTTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..............................................................................................ACTGGGCTTTGTTTATCT........................................................ 18 0 1 5.00 5 5 0 0 0 0 0
.............................................................................................CACTGGGCTCTGTTTATCTCA...................................................... 21 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGGCCTTGTTTATCTC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................CACTGGGATTTGTTTATCTC....................................................... 20 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGGCGTTGTTTATCTC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGGCTTTGGTTATCTCAT..................................................... 23 1 1 5.00 5 0 5 0 0 0 0
............................................................................................TCACTGGGCTTTGTCTATCTC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTA....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGAGCTTTGTTTATCTC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTAGCTCA...................................................... 22 1 1 5.00 5 3 2 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATCTCAG..................................................... 22 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTTTCTC....................................................... 20 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGTCTTTGTTTATCTC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCCA....................................................... 21 2 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTAATCTC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGACTTTGTTTATCTC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
..........................................................................................CGTCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACCGGGCTTTGTTTATCT........................................................ 20 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTAACTC....................................................... 21 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................CACTGGACTTTGTTTATCTC....................................................... 20 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCAATGGGCTTTTGTTATCTCA...................................................... 22 3 1 4.00 4 4 0 0 0 0 0
..........................................................................................CTTCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TACTGGGCTTTGTTTATCTC....................................................... 20 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTTTCTC....................................................... 21 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGGGATATGTTTATCGCA...................................................... 22 3 1 4.00 4 4 0 0 0 0 0
.............................................................................................CACTGGGGTTTGTTTATCTCA...................................................... 21 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGTGCTTTGTTTATCTC....................................................... 21 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTAATCT........................................................ 20 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTCATCTC....................................................... 21 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGGGATTTGTTTATCTCT...................................................... 22 2 1 4.00 4 4 0 0 0 0 0
.........................................................GATACACACAGTTCAGTTTTG.......................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0
.............................................................................................CACTTGGCTTTGTTTATCTCA...................................................... 21 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTATATCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACAGGGCTTTGTTTATCTCA...................................................... 22 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGCTTTGCTTATCTCA...................................................... 21 1 2 3.00 6 6 0 0 0 0 0
............................................................................................TCACTGGGCTTTTTTTAACTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGCTCTGTTTATCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGCTTCGTTTATCTCA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTAGCTCA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................TATCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGCTTCGTTTATCT........................................................ 20 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGATTTGTTTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATA......................................................... 19 1 2 3.00 6 6 0 0 0 0 0
...........................................................................................CTCACTGGGCTTTGTTTATCT........................................................ 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTATATCTCA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATCA........................................................ 19 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGCTTTGATTATCTCA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................GCTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGATTTGTTTATCTCAA..................................................... 23 2 1 3.00 3 3 0 0 0 0 0
.............................................................................................CATTGGGCTTTGTTTATCTCA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTCAAAA................................................... 25 2 1 3.00 3 0 3 0 0 0 0
............................................................................................TCACTGGGGTTTGTTTATCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATTTC....................................................... 20 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCATTGGGCTTTGTTTATCTC....................................................... 21 1 1 3.00 3 2 0 1 0 0 0
.............................................................................................CGCTGGGCTTTGTTTATCTC....................................................... 20 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGCGCTTTGTTTATCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGATTTGTTTATCGC....................................................... 21 2 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGATTTGGTTATCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGATTTGTTTATCT........................................................ 19 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGATTTGTTCATCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0
............................................................................................TTACTGGGCTTTGTTTATCT........................................................ 20 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGCTTTGGTTATATCA...................................................... 21 2 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGCTTGGTTTATCT........................................................ 20 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATCTGA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTTGGCTTTGTTTATCT........................................................ 20 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTGATCT........................................................ 20 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGCATTGTTTATCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTCTC......................................................... 19 1 1 3.00 3 0 3 0 0 0 0
............................................................................................TCACTGGGCTTTGATTATCTC....................................................... 21 1 2 2.50 5 3 2 0 0 0 0
..............................................................................................TCTGGGCTTTGTTTATCTCA...................................................... 20 1 2 2.50 5 5 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTGTCTGA...................................................... 22 2 2 2.50 5 5 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTTT...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.......................................................GGGATACACACAGTTCAGTTTTG.......................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGCCTTTGTTTATCTCT...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCAGTGGGCTTTGTTTATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGTCTTTGTTTATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTGTCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATGTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATCTT....................................................... 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTTTTTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTTTCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTAGGCTTTGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCATTGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCCTTGTTTATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGATTTGTTTAACTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGATTTTTTTATCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTGATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATATC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TAACTGGGCTTTGTTTATCTC....................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..........................................................................................AATCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGATTTGTGTATCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTAGTTTATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTTTTTATCTCT...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCGCTGGGCTTTGTTTATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCAATGGGCTTTGTTTATCTCT...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................GTCACTGGGCTTTGTTTATCTC....................................................... 22 1 2 2.00 4 4 0 0 0 0 0
...........................................................................................TTCACTGGGCTTTGTTTATCT........................................................ 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCAATGGGCTTTTTTTAACTCA...................................................... 22 3 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCG........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTACCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTCATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTGTCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCTCACC.................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................CCTCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.........................................................................................TGCTCACTGGGCTTTGTTTATCTCA...................................................... 25 3 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTCGGCTTTGTTTATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCTGTGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................GCACTGGGCTTTGGTTATCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCCTGGGCTTTGTTTATCTCA...................................................... 21 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCTCTGGGCTTTGTTTATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACGGGGCTTTGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATCGGA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCTCTGGGCTTTGTTTATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................AGGTCACTGGGCTTTGTTTATCTCA...................................................... 25 3 1 2.00 2 2 0 0 0 0 0
..............................................................................................ACTGGGCTTTGTTTATCTCAT..................................................... 21 0 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTCATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATATC....................................................... 20 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................AACTCACTGGGCTTTGTTTATCTCA...................................................... 25 3 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATGTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTACCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CAGTGGGCTTTGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CGCTGGGCTTTGTTTATCT........................................................ 19 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCTTTGTTTATTTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGACTTTGTTTATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCAATGGGCTTTGGTTATCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGCACTTTGTTTATCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATTT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTGTTTTATCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACCGGGCTTTGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTAGTTTATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTCTCT........................................................ 20 1 1 2.00 2 1 1 0 0 0 0
............................................................................................TCACTGGGCTTTGTCTATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................ACTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACGGGGCTTTGTTTATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTATGTTTATCGCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGTTTTGTTTATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTGTATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTA........................................................... 17 0 1 2.00 2 0 2 0 0 0 0
............................................................................................TCACTGGGTTTTGTTTATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATTTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCTTTGGTTATCT........................................................ 20 1 2 1.50 3 3 0 0 0 0 0
............................................................................................TCACTGGGCTTTGTTTATT......................................................... 19 1 2 1.50 3 3 0 0 0 0 0
...........................................................................................TCCACTGGGCTTTGTTTATCTCA...................................................... 23 2 1 1.00 1 1 0 0 0 0 0

Anti-sense strand reads

ATAGGCTCACGATCCGCACATAGGACCGACTTCTCCAGGAGGCCAAAGTCAAATACCCTATGTGTGTCAAGTCAAAACAGTGTGAAGTTCGTAGTGACCCGAAACAAATAGAGTACTCTCGCTTTAAACAAGTTGTACTTTCAGTGTGGATATACATTTTTTTAGATA

***************************************.((((((.((((((((((((.(((.((((((((..(((..........)))..)))))))).))).))))))))))..))))))))..***************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4770:15383858-15384025 - der-mir-318 Known_mirbase TATC-CGAGT--GCTAG-G--------------------CGTGTATCCTGGC-TGAA------------------------------GAG-G-----------TCCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACATGAAA------GTCACACC--TATA-----------------------------------------------TGTAAAAAAATCTAT
droYak3 3R:10262489-10262647 + dya-mir-318 Known_mirbase TATC-CGAGT--GCCTA-G--------------------CGTGTATCCTGGA-TGAA------------------------------AAG-G-----------TCCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCGCACTA--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACAGA-AACCTTAAATCACT---------------------------------------------------------------AATCTGT
droSec2 scaffold_0:15709267-15709440 - dse-mir-318 Known_mirbase TATC-CGAGT--GCCTT-G--------------------CGTGAATCCTGTA-TGAA------------------------------AAG-G-----------TCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA---ACAGGGAACCTTAAATCCTACC--TATA-----------------------------------------------TCTCAAAAAATCTGT
droSim2 3r:14842698-14842871 - dsi-mir-318 Known_mirbase TATC-CGAGT--GCCTT-G--------------------CGTGAATCCTGTA-TGAA------------------------------AAG-G-----------TCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--TAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA---ACAGGGAACCTTAAATCCTACC--TATA-----------------------------------------------TCTAAAAAAATCTGT
dm3 chr3R:6233974-6234147 + dme-mir-318 Known_mirbase TATC-CGAGT--GCCTT-G--------------------CGTGAATCCTGGA-TGAA------------------------------AAG-G-----------TCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA---ACAGGAAACCTTAAATCATACC--AATA-----------------------------------------------TATAAAAAAATCTGT
droEug1 scf7180000409692:710197-710365 + TATT-TAAGT--GCCTT-G--------------------AATGAATTCTGTAAGGAA------------------------------TAC-G-----------ACCCCTGGTTTCAGTTTATGGGATACACACAGCTCAGTCTTGTCACATGT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA---ACAGGCGGT------CCACTCC--ATTA-----------------------------------------------TTTCTCCATACCTAC
droBia1 scf7180000302402:8322920-8323084 + TGTCTTGAGT--GCCTT-G--------------------AGTGAATCCTGCA-GGAA------------------------------GGG-G-----------TCCCCCGGTTTCAGTTTATGGGATACACACAGTTCAGTCGTGTCGCATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACAGGGGT-------TCACTATTTTGTG------------------------------------------------CCC-AAGAAT---T
droTak1 scf7180000415380:1405947-1406172 - TATC-CGAGT--GCTTTTT--------------------GGTGAATCCTGAA-GGAA------------------------------AAG-GTCCAGTTTAAGAAAAAGGATTTCAGTTTATGGGATATACACAGTTCAGTCTTGTCGCCTTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACAAGGGATATTTATTCAAACC--CAAAAAAAGAAATGGTATAATCTGGATC-------CATTTCAAGGATTAAATTTGAAAAGGTATAT
droEle1 scf7180000490995:508425-508561 - TAGC-CGAGT--GCTTT-A--------------------GAAGAATCCTGCACGGAA------------------------------AAG-G-----------ACTCTCGGTTTCAATTTATGGGATACACACAGTTCAGTCTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGA--GAAATTTGTTCA---ACATG-------------------------------------------------------------------------------------
droRho1 scf7180000777158:16283-16465 - TATC-CGAGT--GCTTT-G--------------------GATGAATCCTGGAATTGA------------------------------AGG-G-----------GACCCCGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACATGGGGCCATAGAAAGCACA--CAC-------------------------TCAAATAAAGTTAAGGAATTA--------------AAC
droFic1 scf7180000453800:2313641-2313809 + TATC-TGTTT--GATTT-G--------------------AATTGATCCTGCA-GGGA------------------TG----------AAG-G-----------ATCCACGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTC--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACGGAATAC---AAATCTTCAA--TGTA-----------------------------------------------TCCTGAAAAA----T
droKik1 scf7180000302475:1425857-1426004 + T----CAAGT--G----------------------------TTAGTCCTAGA-AGGA------------------------------CCC-ACCCAGT-----GCCCCCGATTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTTTTCGATCCTCATCACTGGGCTTTGTTTATCTCATAAAAGCGAAATTTTAACACCAACGGGGG-------------------------------------------------------------------------------CTAT
droAna3 scaffold_13340:867196-867350 - dan-mir-318 Known_mirbase -ATC-CGAGT--GCCAA-G--------------------TGTCG-----------AAAGCATCCTGCCTCCTGCATCCTCCTTCCCCAGG-G-----------TCCTCCGGTTTCAATTTGTGGGATACACACGGTTCAGTTGTGTCACTTTT-GCGA---GCATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCA---AC----------------------------------------------------------------------------------------
droBip1 scf7180000394085:131896-132050 + AC-T-CGAGT--GCCCA-G--------------------TGT-----------TGAAATCATCCTGCCTCCCGCATCGATCTTCCCCAGG-G-----------TCCTCCGGTTTCAAATTATGGGATACACACAGTTCAGTTTTGTCACTTTT-GCGA---ACATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCA---AC----------------------------------------------------------------------------------------
dp5 2:7233332-7233467 - dps-mir-318 Known_mirbase AATC-CCTTT--C-------TGTGATGGTGCGTGTGAAACGTGTGCC--------------------------------------------------------TCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCA---AC----------------------------------------------------------------------------------------
droPer2 scaffold_0:1094014-1094155 - dpe-mir-318 Known_mirbase AATC-CCTTT--CCGGT-TCTGTGATGGTGCGTGCGAAACGTGTGCC--------------------------------------------------------TCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCA---AC----------------------------------------------------------------------------------------
droWil2 scf2_1100000004902:74235-74371 - dwi-mir-318-1 Known_mirbase TGCC-CGAGT--GCCT--G--------------------AGTGAATTTTGAA-TCAA------------------------------TTGTG-----------CCAGACGGTTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCGCATTCCACGA---GCATCACTGGGCTTTGTTTATCTCATAGAGGAGAAATGAATACA---AC----------------------------------------------------------------------------------------
droVir3 scaffold_13047:1194292-1194417 + dvi-mir-318 Known_mirbase GAGC-AGTTT--GA----------------------------GAATTTTTTA----G------------------------------AAG-T-----------GATTTGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAATTTGTTCA---AC----------------------------------------------------------------------------------------
droMoj3 scaffold_6540:5225306-5225429 + dmo-mir-318 Known_mirbase TTTG-AACTTGAGATT-------------------------------------TGAAA-----------------------------TGT-G-----------ATTAAGGATTTCAATTTATGGGATACACTAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCA---AC----------------------------------------------------------------------------------------
droGri2 scaffold_14906:5077289-5077437 - dgr-mir-318 Known_mirbase AG-C-CGG-T--TCGTCGT--------------------GGCATCTCGTTCA-GTTT----------------------AGT-----TCG-GCTCTGTTTGTGATTTCGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTAGTTCA---AC----------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
TATC-CGAGT--GCTAG-G--------------------CGTGTATCCTGGC-TGAA------------------------------GAG-G-----------TCCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACATGAAA------GTCACACC--TATA-----------------------------------------------TGTAAAAAAATCTATSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................22193046.00930469264102223819144
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................21111122.00111221103100018172
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................2117522.0075227522000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................2013717.00371736800203329
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................201879.00879879000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................201335.00335335000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................231304.00304302000110
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................191273.00273273000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................221265.00265264000010
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................231165.001651220000043
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................191138.001381280000010
...........................................................................................................................GGATACACACAGTTCAGTTTTG.........................................................................................................................................................22198.009898000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................21160.006060000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.................................................................................................................21149.004949000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................19146.004646000000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................23145.004545000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG...............................................................................................................23140.004040000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................19136.003636000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA...............................................................................................................22134.003434000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................23124.002424000000
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................18123.002323000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................22120.002020000000
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................18119.001919000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................22217.503535000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCT................................................................................................................21116.001616000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCG................................................................................................................21212.502525000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................20111.001111000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT...............................................................................................................22111.001111000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT..............................................................................................................24110.00104000006
.....................................................................................................................................................................CACTGGGCTTTGTTTATC...................................................................................................................1818.0088000000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.................................................................................................................2216.0066000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................1815.0055000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................2115.0055000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG...............................................................................................................2215.0055000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.................................................................................................................2115.0055000000
............................................................................................................................GATACACACAGTTCAGTTTTG.........................................................................................................................................................2114.0044000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATA...................................................................................................................1923.0066000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCA..................................................................................................................1913.0033000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT................................................................................................................2212.0022000000
..........................................................................................................................GGGATACACACAGTTCAGTTTTG.........................................................................................................................................................2312.0022000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTT.................................................................................................................2012.0022000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCG..................................................................................................................2012.0022000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCACC..............................................................................................................2412.0022000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT...............................................................................................................2112.0022000000
....................................................................................................................................................................TCACTGGGCTTTGTTTA.....................................................................................................................1712.0020000002
....................................................................................................................................................................TCACTGGGCTTTGTTTATT...................................................................................................................1921.5033000000
droYak3
TATC-CGAGT--GCCTA-G--------------------CGTGTATCCTGGA-TGAA------------------------------AAG-G-----------TCCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCGCACTA--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACAGA-AACCTTAAATCACT---------------------------------------------------------------AATCTGTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................22188093.00880931704854662120829732800087
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................2119211.00921191081231021363700083
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................2117718.00771807717001000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................2011577.001577271528008470003
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................201661.006610661000000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................201384.003842374003320000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................231318.003180315000210000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................221196.001960192000400000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................231156.001564152000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................222124.0024824224000000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................191103.001030103000000000
...........................................................................................................................GGATACACACAGTTCAGTTTTG.........................................................................................................................................................22197.0097096000010000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................23191.0091091000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................19167.00671156000000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................19152.0052052000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................22150.0050041002700000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA...............................................................................................................22137.0037037000000000
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................18128.0028026000010001
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................23127.0027027000000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................19127.0027027000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG...............................................................................................................23125.0025025000000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCT................................................................................................................21115.0015015000000000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.................................................................................................................2219.00909000000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................1819.00909000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................2118.00817000000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTC.................................................................................................................1818.00808000000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT...............................................................................................................2218.00808000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCC..................................................................................................................2017.00761000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................2116.00623000000001
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA..............................................................................................................2416.00606000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTA.....................................................................................................................1714.00400000000004
.....................................................................................................................................................................CACTGGGCTTTGTTTATC...................................................................................................................1814.00404000000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT..............................................................................................................2313.00303000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................1813.00303000000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG...............................................................................................................2213.00303000000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC...............................................................................................................2213.00303000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT..............................................................................................................2412.00202000000000
..........................................................................................................................GGGATACACACAGTTCAGTTTTG.........................................................................................................................................................2312.00202000000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCC................................................................................................................2112.00202000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCACTT.............................................................................................................2512.00202000000000
..................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA................................................................................................................2412.00202000000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCT................................................................................................................2011.00101000000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAAA..............................................................................................................2311.00101000000000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCT..................................................................................................................2111.00101000000000
..................................................................................................................................................................CATCACTGGGCTTTGTTTATCTC.................................................................................................................2311.00101000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................2011.00101000000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA...............................................................................................................2111.00101000000000
............................................................................................................................GATACACACAGTTCAGTTTTG.........................................................................................................................................................2111.00101000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT................................................................................................................2221.00201000100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGC..............................................................................................................2411.00101000000000
droSec2
TATC-CGAGT--GCCTT-G--------------------CGTGAATCCTGTA-TGAA------------------------------AAG-G-----------TCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA---ACAGGGAACCTTAAATCCTACC--TATA-----------------------------------------------TCTCAAAAAATCTGTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................221292381.00292381286636108474654
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................21129473.0029473288141510508
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................21123562.002356223554206
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................2014362.0043624201380123
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................2012430.0024302430000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................201987.009879554028
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................231761.007617385018
...........................................................................................................................GGATACACACAGTTCAGTTTTG.........................................................................................................................................................221418.00418417001
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................231321.00321320001
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................191304.00304303001
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................191216.00216214101
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................231168.00168167001
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................222135.50271267004
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................231127.00127127000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.................................................................................................................211111.00111111000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCG................................................................................................................211106.00106106000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG...............................................................................................................231102.00102102000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................191102.00102102000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................22199.009996003
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................19199.009996102
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA...............................................................................................................22168.006867001
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................22164.006461102
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................18157.005757000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................21139.003939000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT...............................................................................................................22130.003030000
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................18125.002524001
.....................................................................................................................................................................CACTGGGCTTTGTTTATC...................................................................................................................18119.001919000
............................................................................................................................GATACACACAGTTCAGTTTTG.........................................................................................................................................................21116.001616000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA..............................................................................................................24115.001514001
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................18113.001313000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTC.................................................................................................................18111.001111000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC...............................................................................................................22110.001010000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.................................................................................................................21110.001010000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCG..................................................................................................................2019.0099000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................2019.0099000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.................................................................................................................2219.0099000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG...............................................................................................................2218.0088000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCC................................................................................................................2118.0088000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCT................................................................................................................2127.001414000
...........................................................................................................................GGATACACACAGTTCAGTTTT..........................................................................................................................................................2116.0066000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................2115.0055000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT..............................................................................................................2415.0055000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGA..............................................................................................................2414.0044000
.........................................................................................................................TGGGATACACACAGTTCAGTTT...........................................................................................................................................................2214.0043001
....................................................................................................................................................................TCACTGGGCTTTGTTTATCC..................................................................................................................2014.0044000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTA.................................................................................................................2013.0033000
....................................................................................................................................................................TCACTGGGCTTTGTTTATT...................................................................................................................1923.0066000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA...............................................................................................................2113.0033000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTG.................................................................................................................2013.0033000
droSim2
TATC-CGAGT--GCCTT-G--------------------CGTGAATCCTGTA-TGAA------------------------------AAG-G-----------TCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--TAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA---ACAGGGAACCTTAAATCCTACC--TATA-----------------------------------------------TCTAAAAAAATCTGTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................2213942541.00394254112933879676171220272141824486803814447127461250000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................211491858.00491858145433022761225110422771746585978912000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................201173103.0017310314241252209027677817962535501640000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................23118327.00183270026000887889076715396020000
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................19110629.0010629530445138133209513539040000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................2013716.003716000550011951126611333000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................1912648.002648000700145389002107000000
...........................................................................................................................................................................GCTTTGTTTATCTCA................................................................................................................1512131.002131000000108876370273000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................2111992.001992000862005304975197000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................2211814.00181400038009127802080110000
.........................................................................................................................................................................GGGCTTTGTTTATCTCA................................................................................................................1711757.00175700000022001753000000
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................1811718.001718000132175960230338000000
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................1811285.0012850004008282101116000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................231800.008000002003953652035010000
....................................................................................................................................................................TCACTGGGCTTTGTTTA.....................................................................................................................171708.0070800000012210710478000000
..........................................................................................................................................................................GGCTTTGTTTATCTCA................................................................................................................161682.00682000000825910540000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................191541.00541000120021515200161010000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................221468.004680003002281982235000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.................................................................................................................211393.003930001600188186003000000
....................................................................................................................................................................TCACTGGGCTTTGTTT......................................................................................................................162376.50753000000716000622000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA..............................................................................................................241372.003720000001881654015000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................201362.003621001950065810019010000
...........................................................................................................................GGATACACACAGTTCAGTTTTG.........................................................................................................................................................221340.0034000015001481030070040000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................222309.0061860210026619001152000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................231301.0030100010001351092045000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................211282.002820003001511120016000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................211276.0027600010001141420010000000
........................................................................................................................................................................TGGGCTTTGTTTATCTC.................................................................................................................171263.00263000000403801183010000
.........................................................................................................................................................................GGGCTTTGTTTATCTC.................................................................................................................161250.002500000000000250000000
....................................................................................................................................................................TCACTGGGCTTTGTT.......................................................................................................................153216.33649000000674900533000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................181210.0021000020090510067000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTC.................................................................................................................181188.00188000100194700121000000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................231156.0015600030070601022000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................191150.0015000080002741002000000
........................................................................................................................................................................TGGGCTTTGTTTATCT..................................................................................................................16193.009300000022190052000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................20191.00910004003945003000000
......................................................................................................................................................................ACTGGGCTTTGTTTATC...................................................................................................................17163.0063000000120060000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCT..................................................................................................................17158.00580000001110046000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCC..................................................................................................................20151.005100000017161017000000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.................................................................................................................22146.004600020018140012000000
.......................................................................................................................................................................CTGGGCTTTGTTTATC...................................................................................................................16142.0042000000940029000000
.........................................................................................................................................................................GGGCTTTGTTTATCT..................................................................................................................15332.6798000000100097000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.................................................................................................................21227.00540001002622005000000
........................................................................................................................................................................TGGGCTTTGTTTATC...................................................................................................................15126.0026000000760013000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT..............................................................................................................24126.0026000000188000000000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCT..................................................................................................................21119.0019000100107001000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCATA..............................................................................................................21118.001800000098001000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG...............................................................................................................23117.001700020027006000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA..............................................................................................................24116.001600000087001000000
..................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA................................................................................................................24115.001500000094002000000
...............................................................................................................................ACACACAGTTCAGTTTTG.........................................................................................................................................................18115.0015000000000015000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA...............................................................................................................22115.001500040083000000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA...............................................................................................................21115.001500010057002000000
..........................................................................................................................................................................GGCTTTGTTTATCTC.................................................................................................................15213.5027000000210024000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCAA...............................................................................................................20112.001200010016004000000
........................................................................................................................................................................TGGGCTTTGTTTATCTCAA...............................................................................................................19112.0012000000010011000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATC...................................................................................................................18111.001100040011005000000
...........................................................................................................................GGATACACACAGTTCAGTTTT..........................................................................................................................................................21111.001100000023006000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATA..............................................................................................................22110.001000000045001000000
.........................................................................................................................TGGGATACACACAGTTCAGTT............................................................................................................................................................21110.001000000003007000000
......................................................................................................................................................................ACTGGGCTTTGTTTAT....................................................................................................................16110.001000000011008000000
.........................................................................................................................TGGGATACACACAGTTCAGTTT...........................................................................................................................................................22110.001000000040005010000
....................................................................................................................................................................TCACTGGGCTTTGTTTATA...................................................................................................................19110.001000000013006000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATC..............................................................................................................2219.00900000000009000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCG..................................................................................................................2019.00900010022004000000
dm3
TATC-CGAGT--GCCTT-G--------------------CGTGAATCCTGGA-TGAA------------------------------AAG-G-----------TCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA---ACAGGAAACCTTAAATCATACC--AATA-----------------------------------------------TATAAAAAAATCTGTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................22118436845.00184368452805412364000000010000001558244380644187525935800036000468372354648042241074070445877848122848394417721294799595141192108406125194729231706972651300072472000000000000000001521811151375205014837211413023131908164101532410777979285231618346246092000509012155358413146073640336191675661541115371264142717012733118409362161124162327564379109349168599325004950461420192557321323861421083001357030911306422829616924221687511242811328764768376209467336920331623601211631922782361732791173205418297101851678351613376028129667397713625309612923156609667078107521685747428331350051482008503512223158210129753283172356441116466552134223889959510011984992049335097561242743230767911221802592469451224122117151113271019851187332560757645931377158424310930432123292183478383515576145117201186163914524193646248130654408451773724127105291702107132
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................2112351916.002351916000004800010000000000156346871492521890000000044032513628023983672449076144166421691039671392849667114426708108011603120010102000000000000000007999987500001041510331002387110002216232242974080023602160000010002022211741634303312031897664521955126022244281700686151320844277241397719543349151029202201316141539808010001120101142106638673462115766281301033912601082439455493274601580498821175134134621834157135964181613813352240828813116578010749754778236397115001613100000235224104313255913811943912860121636101121250462636713294585561173937334977837122026991731112421084640039619120795372693862073715164953592117553765723284844728215389919101132761136131417331861252206893722
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................201687247.0068724700001140001000000000030415878702515000000004125695318477998122630497631091932197174191225252958235719443490003900000000000000000043544537000000081021021531100007123640571160002110101000000002861912198157659142632473502246400740622799203835323683478660718250000047572292992400004000020500112923611071199995108613600211321675810312741012181651055250636022195310722522510876857859693277106841522210821136701300290000000543320010319100740750502210031401602148670983741328132987704311303241685838125154107419438001144378461280238673158687043216441413928248084242711191581230616176736232029139083764463637
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................201266139.002661390000000000000000000027680213031200000000840431879321735241106134203528280334523932438153681435297050000000000000000000000034130000000000000007000000000000050010000100000000000010012251912460110214233573093960200656291245523344212148600000307104100200000000000150120057377143355702724026700000521280231000004974297472163448761634536812614122900000000000028200101000300000000000000000000105866334831772941489026099274044765882000000110016013131575101840697500000028316135719200100000000007030834147000300
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................22187483.0087483000002000000000000006568403802000000007711410074122280625992622155111599820769551461790000000000000000000000010100000000000000001500000000010005000000010000000010010020354117762002225842944321491138269375990526000000000110200000000000000000002122430221070131010018670200010004732731421571527070348318000020000001110000000125000000100000000000000132110011298135627672083215821114910000000000020289665629655105330000169414219700000000000000922306001000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................23178291.00782910000010000000010000040162200050000000020872218118182418928328953634623362322141612148000000000000000000000000101000000000000010560000000112000100000000000000000000021020194113001055926272184031231237649388829800000100011010010000000000013003047220171402449349014050012246172326250303168201525219814962381011366512822651500000011660000010900000001160000001000001000100003074647411973147626711474398492811000000000000001155200397519520000015358651582000000100100008316213043020843
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................22154509.005450900000100000000000000135430020200000000179291287286111638266058425396708210114467150000000000000000000000001102100000120001000220000001000000300000001000000000000011834267032028108373268292160104224751026446000000000100001000000000040080031341265100302710001357201010020049211388916314357690331752610000030000002450100000124000000103000000000000156656864071326291212044138353873000000000005032746694719791000029011188500000000000000007373511000521
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................19143121.004312100000000000000000000136280500040000000099688153512142314981021011714815398842900000000000000000000000768700000000000000035000000000010070000000000000000000106755970605140232013812720121514929623419512526991623481160000020220000000000000000000031209217349120010067823118377040921002013242033579493734801711083804823550000095100000330000000250001000000010000100001677306560514472348414095218421211021020000114628047936565700001225058612131000000012010091233749712119111
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................21140415.0040415000000000000000000001166201020000000051204594117496301331212110912345198290001000000000000000000001010000000000000003210000010000001000000000000000000001000445142126110100122259771813782332434631260000000000000020000000000000100325002240002028000011822001200100773210117460242909891501034543000000000005900000000500000000000000000000012336532326134715821029113316691100000000000100329921212622000000367322549000000101000001633237000005
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................19134420.00344200000000000000000000036801000400000000985114936761129151620241301632281346523345000000000000000000000000111000000000000000100000000000000000000000000000000000013102100203558322126206781333424942619200000000040000000000000000000101040230110010034000007140001000001665610596116176284643486232860000000000012000000012000000000000000000000126873583001484129186445963734000000000000101974432568160010003023165510000001000000141098416000100
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................18110293.0010293000000000000000000005321000100000000132141614138630455440602918379000000000000000000000000401000000000000000000000000000000000000000000000000000120000000201024836642351533395110000020010000000000000000000010001609100000900000040000000001312510564397921721011020000000000030000000000000001000000000000004532263121512465324610775800000011000000019905419300000075224000000000000000219147000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................19110063.00100630000000000000000000020127000000000000083815024222043358433996970000000000000000000000001000000000000000003000000000000010000000000000000000000030002001000222416812042756659636000000000000000000000000000000001571120000104700013962000000003224637293371261800000000000200000000100000000000000000000059931807434827317892151448000000000000200511553476000001468398000000000000000340000009
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................2319837.00983700000100000000000000844000010000000016810818040816249442456441511300024100000000000000000000132000000000000000200000000000000700000000000000000000000330270000021812043742804170162590000000000000010000000000000000113636200130152010025240001000004970010571791517753431011581059000136100000140000000010000000010000000000001714405516828867536280421001000000000012220610821000000028891330000000000000041474000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................2228879.001775800000500000000000000133100000000000001115162390237321411668110421879108000000000000000000000000001000000000000000320000000000000900000000000000000100021181418340000010973364381778425459000000100000000000000000001000013661112000201700000394200001000079442212391410134251482080000000000063000000001000000000000000000000086716453014981771329413262465201000000000101348523402631000000179348529000000100000002147564000500
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................2015523.00552300000000000000000000280000000000000743130615020261411812300000000000000000000000011000000000000000050000000000000100000000000000000000012001351000005245197130193311000000000000000000000000000000000202100000400000130000000001101285294112874997530000000000010000000020000000000000000000003331388692622321512805150000000000000001855267900000029556500000000000000013143000100
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................1815045.005045000000000000000000002710800100000000005440403090271242330511000000000000000000000000000000000000000000010000000000000100000000000000000000000100014000000101183345122149278000000000000000000000000000000000272110000001811034090000000001732280305051000000000002000000000000000000000000000000231178428158117825107862000000000000000305414230000002129260000000000000001200000010
...........................................................................................................................GGATACACACAGTTCAGTTTTG.........................................................................................................................................................2214844.004844000004000000000000001110000000000040458480284231142117312132110004327400000000000000000000000000000100000011410000005240002400000000000000000000000000000000001392446241043471938000002030000000000000001000000000402243000002000006700000000011461281343157324728000000000009800000000100000000000000000000022115181333420841211000000000000303207103667303000000227305243100000000000003271000705
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................1814190.004190000000000000000000001857000000000000019252111102104951711823117197000000000000000000000002425000000100000000130000000000001300000000000000001102584577641000012880020035514230333517261400000000100000000000000000001030102402230000023100106500100010252911522191492141612000100000006000000001000000000000020000000841742863961691062273000020100001029375132420000003710024100100000000000554200010113
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................2114119.004119000001000000000000000710000000000003053130105321028494539420000000000000000000000000000000000000000004000000000000000000000000000000000006801101000000636102330152429900000000000000000000000000000100016111100000400000240000000003011274292321513042000000000000000000000000000000000000000000770446166102726486236961010000000000025714852100000010204000000000000000134972000100
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................2313996.003996000000000000000000001140000000000000135741202032133005737281740800000000000000000000000000000000000000000011000000000000010100100000000000000002003028000000855121920222558250000000002000000000000000000000001007300030000001360000000002130021026301110766183139000024100000110000000000000000000000000000005443329871327331465030000000000001005784811030000001629500000000000000001141000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC..............................................................................................................2412658.0026580000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000422221230000259635000000000000000000000000000000000000000001000000000000000001001000000000000000000000000200000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................2112332.002332000002000000000000002500002000000001124100151618111813239810000000000000000000000000010000000000010001000000000000000000000000000000000002410120000100813181680412112000000000000100000000000000000000101100000400000780001000007020625713655896171000010000001500000001000000000000000000000018522748642613468411300000000000000114194623000001112743000000000000001752000100
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA..............................................................................................................2412058.0020580000000000000000000013000000000000085335020001211289013800000000000000000000000000000000000000000000000000000000000000000000000000000000030030000000436126111350000000000000000000000000000000004000000200000013100000000070105687584749363520000000000010000000000000000000000000000005712220901502923612100000000000000018281641000000111545000100100000006430000000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................2311905.001905000003000000000000002000000000000001141201030917350222000000000000000000000000000000000000000000190000000000000400000000000000000000000002200010011261821305200000000000000000000000000000000000200000020000003000000100000060713959135135000000000000000000000000000000000000000000362481467654693123500000000000000022491130000001624641000000000000001500000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................1911686.0016860000000000000000000002000020000000003310011000033513200000000000000000000000000100000000000000000000000000000000000000000000000000123000000000101105930242400000000000000000000000000000000010000000000000000000000000200016892102199000000000000000000000000000000000000000000101462168090572138400000000000000131481600000031730000000000000001332000002
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.................................................................................................................2111274.001274000000000000000000000000000000000000000100012010015520000000000000000000000000000000000000000000000000000000000100000000000000000000011000110000001012101542000000000000000000000000000000000001000000000000000000000000011210113030000000000010000000010000000000000000000002561525330243157125811000000000000043173035000000055000000000000000120000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA...............................................................................................................2111170.001170000000000000000000001400000000000004134402040201861014400000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000626401312176000000000000000000000000000000000301000000000000020000000000000125111033221100000000000000000000000000000000000000000037167174837305271900000000000000007289220000002319000000000000000120000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCC................................................................................................................2011117.001117000000000000000000000000000000000004261706115020227901433220000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001061424020141915000000000000000000000000000000000101000000100000000000000000000600020540000000000010000000000000000000000000000001414823124129317910000000000000013812125140000000215000000000000000030000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCC..................................................................................................................201986.00986000000000000000000000000000000000001221101030104001220000000000000000000000000000000000000000000000000000000000000000000000000000001012000000010001505101220000000010000000000000000000000000302000000200000110000000003000523167116000000000001000000002000000000000000000000114197245797160274300000000000000213111923000000414410000000000000041042000200
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................201830.008300000010000000000000001000010000000020012022003011024000000000000000000000000000000000000000000000000000000000000000000000000000000066200000000003924512231000000000000000000000000000051000001000000100000010000000000000201077151922190000000000000000000000000000001000000000005299124511320672600000000000000045940000002832000000000000002302000100
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTAC................................................................................................................221823.0082300000000000000000000430000000000000001200800020038282700000000000000000000000000000000000000000000000000000000000000000000000000000000012021000000011246103101130000000000000000000000000000100002010000101000000100000000010000000110100001000000100000000000000000000000000000072671318435351820000000000000009271337000000101000000000000000000000000
droEug1
TATT-TAAGT--GCCTT-G--------------------AATGAATTCTGTAAGGAA------------------------------TAC-G-----------ACCCCTGGTTTCAGTTTATGGGATACACACAGCTCAGTCTTGTCACATGT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA---ACAGGCGGT------CCACTCC--ATTA-----------------------------------------------TTTCTCCATACCTACSizeHit CountTotal NormTotal
No Reads
droBia1
TGTCTTGAGT--GCCTT-G--------------------AGTGAATCCTGCA-GGAA------------------------------GGG-G-----------TCCCCCGGTTTCAGTTTATGGGATACACACAGTTCAGTCGTGTCGCATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACAGGGGT-------TCACTATTTTGTG------------------------------------------------CCC-AAGAAT---TSizeHit CountTotal NormTotal
No Reads
droTak1
TATC-CGAGT--GCTTTTT--------------------GGTGAATCCTGAA-GGAA------------------------------AAG-GTCCAGTTTAAGAAAAAGGATTTCAGTTTATGGGATATACACAGTTCAGTCTTGTCGCCTTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACAAGGGATATTTATTCAAACC--CAAAAAAAGAAATGGTATAATCTGGATC-------CATTTCAAGGATTAAATTTGAAAAGGTATATSizeHit CountTotal NormTotal
No Reads
droEle1
TAGC-CGAGT--GCTTT-A--------------------GAAGAATCCTGCACGGAA------------------------------AAG-G-----------ACTCTCGGTTTCAATTTATGGGATACACACAGTTCAGTCTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGA--GAAATTTGTTCA---ACATG-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TATC-CGAGT--GCTTT-G--------------------GATGAATCCTGGAATTGA------------------------------AGG-G-----------GACCCCGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACATGGGGCCATAGAAAGCACA--CAC-------------------------TCAAATAAAGTTAAGGAATTA--------------AACSizeHit CountTotal NormTotal
No Reads
droFic1
TATC-TGTTT--GATTT-G--------------------AATTGATCCTGCA-GGGA------------------TG----------AAG-G-----------ATCCACGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTC--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA---ACGGAATAC---AAATCTTCAA--TGTA-----------------------------------------------TCCTGAAAAA----TSizeHit CountTotal NormTotal
No Reads
droKik1
T----CAAGT--G----------------------------TTAGTCCTAGA-AGGA------------------------------CCC-ACCCAGT-----GCCCCCGATTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTTTTCGATCCTCATCACTGGGCTTTGTTTATCTCATAAAAGCGAAATTTTAACACCAACGGGGG-------------------------------------------------------------------------------CTATSizeHit CountTotal NormTotal
No Reads
droAna3
-ATC-CGAGT--GCCAA-G--------------------TGTCG-----------AAAGCATCCTGCCTCCTGCATCCTCCTTCCCCAGG-G-----------TCCTCCGGTTTCAATTTGTGGGATACACACGGTTCAGTTGTGTCACTTTT-GCGA---GCATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCA---AC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................22123669.00236692364932348
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................2115922.005922591500124
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................2013654.003654364610034
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................2111938.001938193800000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................231886.0088688600000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................201508.0050850800000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................191295.0029529500000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................221197.0019719700000
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................191138.0013813700001
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................201116.0011611600000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT...............................................................................................................22187.00878700000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................23186.00868600000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................22172.00727200000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................23129.00292900000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................19125.00252500000
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................18125.00252500000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT..............................................................................................................24125.00252500000
...........................................................................................................................GGATACACACGGTTCAGTTGTG.........................................................................................................................................................22124.00242400000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................19124.00242400000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................21222.00444400000
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................18120.00202000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG...............................................................................................................23116.00161600000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCT................................................................................................................21115.00151500000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................22114.00141400000
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................18113.00131300000
.....................................................................................................................................................................CACTGGGCTTTGTTTATC...................................................................................................................18113.00131300000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................2319.009900000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA...............................................................................................................2216.006600000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT..............................................................................................................2315.005500000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTC.................................................................................................................1815.005500000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.................................................................................................................2215.005500000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.................................................................................................................2114.004310000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................2114.004400000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCC................................................................................................................2114.004400000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCG................................................................................................................2114.004400000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCC..................................................................................................................2013.003300000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC..............................................................................................................2413.003300000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCAT...............................................................................................................2013.003300000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT................................................................................................................2232.678800000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................2012.002200000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT...............................................................................................................2112.002200000
....................................................................................................................................................................TCACTGGGCTTTGTTTATT...................................................................................................................1931.675500000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTT.................................................................................................................2021.503300000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCT................................................................................................................2011.001100000
............................................................................................................................GATACACACGGTTCAGTTGTG.........................................................................................................................................................2111.001100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG..............................................................................................................2411.001100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.................................................................................................................2111.001100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGA...............................................................................................................2311.001100000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG...............................................................................................................2211.001100000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCA..................................................................................................................1911.001100000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA...............................................................................................................2111.001100000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC...............................................................................................................2211.001100000
............................................................................................................................GATACACACGGTTCAGTTGTGT........................................................................................................................................................2211.001100000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAAG..............................................................................................................2311.001100000
...........................................................................................................................GGATACACACGGTTCAGTTGT..........................................................................................................................................................2111.001100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT..............................................................................................................2411.001100000
.................................................................................................................................................TCACTTTT-GCGA---GCATCACTGGGCTTTG.........................................................................................................................2811.001100000
.......................................................................................................................TGTGGGATACACACGGTTCAGT.............................................................................................................................................................2211.001100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA..............................................................................................................2411.001100000
...........................................................................................................................GGATACACACGGTTCAGTTGTGG........................................................................................................................................................2311.001100000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAG...............................................................................................................2111.001100000
........................................................................................................................................................................TGGGCTTTGTTTATCTCAT...............................................................................................................1911.001100000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTG.................................................................................................................1911.001100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCG..................................................................................................................2011.001100000
droBip1
AC-T-CGAGT--GCCCA-G--------------------TGT-----------TGAAATCATCCTGCCTCCCGCATCGATCTTCCCCAGG-G-----------TCCTCCGGTTTCAAATTATGGGATACACACAGTTCAGTTTTGTCACTTTT-GCGA---ACATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCA---AC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AATC-CCTTT--C-------TGTGATGGTGCGTGTGAAACGTGTGCC--------------------------------------------------------TCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCA---AC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................22164749.006474917422703010126722335341
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................21112335.001233515102080214162076112
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................2015099.0050992487000021720440
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................2113906.00390603867000103800
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................201999.00999099700000200
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................231496.0049603030000019300
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................221482.004822458000002200
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................191405.00405040500000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................201273.002730183001018800
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................231273.002730183000009000
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................191173.001730132000004100
...........................................................................................................................GGATGCACCAAGTTCAGTTTTG.........................................................................................................................................................221145.00145014200000300
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................21176.007607300000300
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................19150.005004400000600
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................23147.0047036000001100
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCT................................................................................................................21146.004604600000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................19143.004303700000600
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................18139.0039025000001400
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT..............................................................................................................24126.002602200000400
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT...............................................................................................................22126.002602600000000
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................18126.002602400000200
....................................................................................................................................................................TCACTGGGCTTTGTTT......................................................................................................................16125.002500000002500
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG...............................................................................................................23124.002402400000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................22121.002101900000200
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................18119.001901900000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA...............................................................................................................22113.001301300000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTT.................................................................................................................20111.001101100000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................21110.00100800000200
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................23110.00100600000400
.....................................................................................................................................................................CACTGGGCTTTGTTTATC...................................................................................................................18110.001001000000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTC.................................................................................................................1819.0090900000000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.................................................................................................................2219.0090300000420
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................2218.0080600000110
............................................................................................................................GATGCACCAAGTTCAGTTTTG.........................................................................................................................................................2118.0080800000000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCT..................................................................................................................2117.0070700000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAG..............................................................................................................2416.0060000000600
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT................................................................................................................2215.0050500000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGAG..............................................................................................................2415.0050000000500
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................2014.0040400000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTAG..............................................................................................................2414.0040000000400
..................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA................................................................................................................2414.0040200000200
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT..............................................................................................................2413.0030000000300
....................................................................................................................................................................TCACTGGGCTTTGTTTATCC..................................................................................................................2013.0030300000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA...............................................................................................................2113.0030200000100
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTA...............................................................................................................2313.0030200000100
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATC..............................................................................................................2213.0030000000300
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA..............................................................................................................2413.0030000000300
....................................................................................................................................................................TCACTGGGCTTTGTTTA.....................................................................................................................1713.0030000000300
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAA...............................................................................................................2412.0020000000200
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT...............................................................................................................2112.0020200000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG..............................................................................................................2412.0020000000200
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCG................................................................................................................2012.0020200000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCG................................................................................................................2112.0020200000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG...............................................................................................................2212.0020200000000
.................................................................................................................................................TCACATTT--CGA---GCATCACTGGGCTT...........................................................................................................................2512.0020000000200
.................................................................................................................................................TCACATTT--CGA---GCATCACTGGGCTTTG.........................................................................................................................2712.0020000000200
....................................................................................................................................................................TCACTGGGCTTTGTTTATA...................................................................................................................1912.0020200000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAACC...........................................................................................................2712.0020000000200
...........................................................................................................................GGATGCACCAAGTTCAGTTTT..........................................................................................................................................................2112.0020200000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGG..............................................................................................................2412.0020000000200
....................................................................................................................................................................TCACTGGGCTTTGTTTATT...................................................................................................................1921.5030200000100
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCT................................................................................................................2011.0010100000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAA.............................................................................................................2511.0010000000100
.......................................................................................................TCTTTTGGTTTCAATTTATG...............................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAGG.............................................................................................................2511.0010100000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC...............................................................................................................2211.0010100000000
....................................................................................................................................................................TCACTGGGCTTTGTT.......................................................................................................................1511.0010000000100
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTA.................................................................................................................2011.0010100000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCAT...............................................................................................................2011.0010100000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATGTT............................................................................................................2611.0010000000100
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCC................................................................................................................2111.0010100000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAATT...........................................................................................................2711.0010000000100
..................................................................................................................................................................CATCACTGGGCTTTGTTTATCT..................................................................................................................2211.0010000000100
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATAGCG...........................................................................................................2511.0010000000100
....................................................................................................................................................................TCACTGGGCTTTGTTTATAA..................................................................................................................2011.0010100000000
........................................................................................................................................................................TGGGCTTTGTTTATCTCAA...............................................................................................................1911.0010100000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTC...............................................................................................................2311.0010100000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTGT..............................................................................................................2411.0010000000100
droPer2
AATC-CCTTT--CCGGT-TCTGTGATGGTGCGTGCGAAACGTGTGCC--------------------------------------------------------TCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCA---AC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................22137016.00370163936942014156
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................2115167.0051671251340588
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................2113242.003242032420000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................2011409.001409013940645
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................201434.0043404340000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................231357.0035703570000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................201155.0015501550000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................231129.0012901280100
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................221119.0011901190000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................191113.0011301130000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................22182.00820820000
...........................................................................................................................GGATGCACCAAGTTCAGTTTTG.........................................................................................................................................................22160.00600600000
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................19141.00410410000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT...............................................................................................................22132.00320320000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................19122.00220220000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................22118.00180180000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................23117.00170170000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCT................................................................................................................21116.00160160000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................19116.00160160000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG...............................................................................................................23114.00140140000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA...............................................................................................................22111.00110110000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................21110.00100100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................2318.008080000
.....................................................................................................................................................................CACTGGGCTTTGTTTATC...................................................................................................................1818.008080000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT..............................................................................................................2417.007070000
............................................................................................................................GATGCACCAAGTTCAGTTTTG.........................................................................................................................................................2115.005050000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................2114.004040000
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................1814.004040000
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................1814.004040000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................2014.004040000
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................1814.004040000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.................................................................................................................2213.003030000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCC................................................................................................................2112.002020000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGA...............................................................................................................2312.002020000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT...............................................................................................................2112.002020000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT..............................................................................................................2411.001010000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCT................................................................................................................1911.001010000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGG..............................................................................................................2411.001010000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA..............................................................................................................2411.001010000
..............................................................................................................................TGCACCAAGTTCAGTTTTG.........................................................................................................................................................1911.001010000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT................................................................................................................2211.001010000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC...............................................................................................................2211.001010000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCC..................................................................................................................2011.001010000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTC.................................................................................................................1811.001010000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT..............................................................................................................2311.001010000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGT..............................................................................................................2411.001010000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA...............................................................................................................2111.001010000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGC...............................................................................................................2311.001010000
droWil2
TGCC-CGAGT--GCCT--G--------------------AGTGAATTTTGAA-TCAA------------------------------TTGTG-----------CCAGACGGTTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCGCATTCCACGA---GCATCACTGGGCTTTGTTTATCTCATAGAGGAGAAATGAATACA---AC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................22234649.50692996855621961804721
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................2124661.0093222201706936214
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................2122730.00546025458000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................202872.0017441817091304
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................232710.001420991321000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................202313.006260626000
...........................................................................................................................GGATACACCAAGTTCAGTTTTG.........................................................................................................................................................222174.503490349000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................202146.502935285201
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................232110.002208211010
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................19265.501310131000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT...............................................................................................................22261.501230123000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................22253.501073104000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................22250.501017427000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................19236.0072072000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................23234.5069564000
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................19233.5067859000
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................18223.0046046000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................19221.5043340000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................23217.5035035000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT..............................................................................................................24216.0032329000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG...............................................................................................................23215.5031031000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA...............................................................................................................2228.0016016000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................2228.0016214000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCT................................................................................................................2127.0014014000
............................................................................................................................GATACACCAAGTTCAGTTTTG.........................................................................................................................................................2126.5013013000
.....................................................................................................................................................................CACTGGGCTTTGTTTATC...................................................................................................................1825.5011011000
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................1825.0010010000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATT..............................................................................................................2224.50926010
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................2124.50909000
..........................................................................................................................GGGATACACCAAGTTCAGTTTTG.........................................................................................................................................................2324.00808000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTC.................................................................................................................1823.00606000
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................1823.00606000
........................................................................................................CAGACGGTTTCAATTTATG...............................................................................................................................................................................1923.00606000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.................................................................................................................2122.00404000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCG................................................................................................................2122.00404000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................2122.00404000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT...............................................................................................................2122.00404000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA..............................................................................................................2421.50303000
...........................................................................................................................GGATACACCAAGTTCAGTTTT..........................................................................................................................................................2121.50303000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.................................................................................................................2221.50303000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCATT..............................................................................................................2121.50303000
............................................................................................................................GATACACCAAGTTCAGTTTT..........................................................................................................................................................2021.00202000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT................................................................................................................2221.00202000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG...............................................................................................................2221.00202000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCAT...............................................................................................................2021.00202000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.................................................................................................................2121.00202000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAT...............................................................................................................2421.00202000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................2021.00202000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCT..................................................................................................................2121.00202000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT..............................................................................................................2321.00202000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGG..............................................................................................................2420.50101000
............................................................................................................CGGTTTCAATTTATGGGA............................................................................................................................................................................1820.50101000
...........................................................................................................................GGATACACCAAGTTCAGTTG...........................................................................................................................................................2020.50101000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG..............................................................................................................2420.50101000
...........................................................................................................................................................CGA---GCATCACTGGGCTTTGTTTATCTCA................................................................................................................2820.50101000
..............................................................................................................................TACACCAAGTTCAGTTTTGTCG......................................................................................................................................................2220.50101000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCACT..............................................................................................................2420.50110000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCT................................................................................................................2320.50101000
...............................................................................................................................ACACCAAGTTCAGTTTTG.........................................................................................................................................................1820.50101000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT.............................................................................................................2520.50101000
....................................................................................................................................................................TCACTGGGCTTTGTTTATG...................................................................................................................1920.50101000
..........................................................................................................................GGGATACACCAAGTTCAGTTTT..........................................................................................................................................................2220.50101000
..............................................................................................................................TACACCAAGTTCAGTTTTGTCGCA....................................................................................................................................................2420.50101000
droVir3
GAGC-AGTTT--GA----------------------------GAATTTTTTA----G------------------------------AAG-T-----------GATTTGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAATTTGTTCA---AC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................2212224776.0022247764350252493034295106439225671166216965213291212406698768592811329646661334602011105712315035993511671447951841021198658841505000000000000001106060493111356152904954219171631324630834818538120994626845528238320287318619676
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................211882154.0088215441485580902578109619975116671311608313662211254675143319605865868821867629931316972714329720840100000000000000114830017283122834989913158519163228980849975613829613716810257271840906
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................23135988.0035988068870405113610320310200204025612351157710962946341856153832536586000000000000000001300002210252191113433040812459270835503622118233834
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................20129926.0029926422265406293416356111808662183010111452411659240830473274193171481479185361046541000000000000000000230111344263113144461573461937863054103930216208
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................2116544.006544004789030225013011000000000100269163188158200002001046000000000000000000000006132100017824213117415117900001
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................2015837.00583700263026672911960840030201146012464402805667803001010101247290000000000000000010000010926400024935620926024930300000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................2315394.0053940117501170145026011000120001111150334238579539300113102236000000000000000000010002017532842141444625528636140833163
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................1913952.00395211314001805254054025012000001100233112107150811100060031283200000000000000000330020159751004105073042224352540021214
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................2212434.002434215041694871120970000002075004173614302600100400006207000000000000000002000006901033342527583601003
...........................................................................................................................GGATACACCAAGTTCAGTTTTG.........................................................................................................................................................2212114.002114001020140150000000000000000227231471150000000000500000000000000000000000015522400031429611017622216700000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................2212011.002011129006621281500320000002023105210166106801000010011252000000000000000000300000479400016311511810317513301279
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................2211725.0017250131905427002401400000000020037541251540001000000108100000000000000000100000167700022920614311716425101112
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................1911335.001335002401702406407400000000100024402737510000040000500000000000000000001001000280001452129312613016200000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................2011117.0011170052804060506000000000000241415100000000000700000000000000000000000002000931106567869100020
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT..............................................................................................................241956.0095600120110401010000001000001233225373100000000042100000000000000000000009183900010312989871169800010
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATT..............................................................................................................221710.0071000304190100000000000000617444390000000000141000000000000000000000001730000988468691119000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................191705.0070500480401720200000000000200353215715100000000004600000000000000000000000082800053622941303800001
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................181437.004370028080260203000000000100347826603200000330105300000000000000000000000093800056828200001
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................181332.003320032011040040001000000010013241023190000000000320000000000000000000000010370001835106132000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................231325.0032500170311400010000001001006181437600000000000160000000000000000000000007110002922919162200001
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................191251.00251002270001000000000000000013461000000000050000000000000000000000000100000011000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT...............................................................................................................211216.002160090516200000000000000031613375600000000008000000000000000000000000113800023121200000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................211212.002120123080601601100000000000029511500000010002400000000000000000000000008000131713816900114
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT...............................................................................................................221171.0017100930200000000000000000016110110000000000200000000000000000000000047000453471100000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................231170.00170007600020000000000000000141230000000000000000000000000000000000605400006212001000
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................181151.001510011050100110900000000010013141614120000000000280000000000000000000000001500010000000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATA..............................................................................................................221148.001480000302000000000000000023322180000000000200000000000000000000000011230001011610111000100
.......................................................................................................................TATGGGATACACCAAGTTCAGT.............................................................................................................................................................221140.00140003030130170100000000000086414230000000000200000000000000000000000055000312462900000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC..............................................................................................................241133.00133001040400000000000000002323110000010000400000000000000000000000370200081747111200000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTC.................................................................................................................181129.0012900400060705000000000000111330000000000200000000000000000000000300100072011471600000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................211127.00127005030208090000000000003223000000000004000000000000000000000001200000141188131401131
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGC.............................................................................................................................241105.00105001000000000000000000000010200000000001000000000000000000000002010008151712182700000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG...............................................................................................................23167.006700170100000000000000000014083000000000020000000000000000000000002400055044700000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCT............................................................................................................................25153.005300401020100000000000000016158000000000010000000000000000000000002000013101600000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTT..........................................................................................................................27152.005200801020100000000000000142116000000000030000000000000000001000001000011800100000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.................................................................................................................22151.005100400000100000000000000100000000000000000000000000000000000000260000053425000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................20149.00490012000001000000000000002113300000000001400000000000000000000000120000000000000000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTT...........................................................................................................................26144.004400500010200000000000000022104000000000010000000000000000003000000000013313300000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA..............................................................................................................24142.00420000001000000000000000014268000000000000000000000000000000000000200084032100000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCATA..............................................................................................................21140.00400000200010100000000000001146000000000010000000000000000000000001000025542400000
.........................................................................................................................................................................GGGCTTTGTTTATCTCA................................................................................................................17139.0039000000000000000000000000000000000000000000000000000000000000000102900000000000000
..........................................................................................................................GGGATACACCAAGTTCAGTTTTG.........................................................................................................................................................23139.00390000000000000000000000000012000000000000000000000000000000000000000038759400000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCATT..............................................................................................................21136.00360000002010000000000000021062000000000020000000000000000000000000300024434000000
........................................................................................................................................................................TGGGCTTTGTTTATCTC.................................................................................................................17135.003500000000000000000000000000000000000000000000000000000000000000350000000000000000
........................................................................................................................................................................TGGGCTTTGTTTATCTCATAAG............................................................................................................22133.00330010000010100000000000025188000000000000000000000000000000000000200000011200000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTG.........................................................................................................................28132.00320050100000000000000000014271000000000010000000000000000000000014000004000100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.................................................................................................................21130.00300030000020200000000000001010000000000000000000000000000000000000000046312300200
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGG...............................................................................................................................22130.003000601000000000000000000002220000000000000000000000000000000000051200000000000000
.........................................................................................................................TGGGATACACCAAGTTCAGTTT...........................................................................................................................................................22129.002900300000000000000000000011109000000000000000000000000000000000001400000000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCC..................................................................................................................20128.00280100202010000000000000055121000000000030000000000000000000000000100013000000000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCC................................................................................................................20124.00240000705000200000000000080000000000000020000000000000000000000000000000000000000
...........................................................................................................................GGATACACCAAGTTCAGTTTTGTCAGATG..................................................................................................................................................29123.002300000000000000000000000000000000000000000000000000000000000000000000710211200000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA...............................................................................................................22122.002200190000000000000000000000011000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCAT...............................................................................................................20122.00220020000000000000000000012012000000000000000000000000000000000000100014122300000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAG..............................................................................................................24121.00210000000000000000000000010000000000000000000000000000000000000000000043321700000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT..............................................................................................................24120.00200020000000000000000000000133000000000030000000000000000000000001000030003100000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA...............................................................................................................21120.00200010001000000000000000001254000000000030000000000000000000000000200010000000000
...........................................................................................................................GGATACACCAAGTTCAGTTTT..........................................................................................................................................................21117.00170020001000000000000000000042000000000000000000000000000000000002600000000000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCT................................................................................................................21117.001700160000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCATC..............................................................................................................23116.001600000000000000000000000000000000000000000000000000000000000000160000000000000000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGG..............................................................................................................................23116.00160030100000000000000000003113000000000000000000000000000000000003000000001000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCCA...............................................................................................................23116.00160000304000000000000000030010000000000050000000000000000000000000000000000000000
............................................................................................................................GATACACCAAGTTCAGTTTTG.........................................................................................................................................................21115.00150020000000000000000000001010000000000000000000000000000000000000100010313200000
...............................................................................................................................ACACCAAGTTCAGTTTTG.........................................................................................................................................................18115.00150000000000000000000000000000000000000000000000000000000000000000000014005500000
....................................................................................................................................................................TCACTGGGCTTTGTTTA.....................................................................................................................17115.00150000000000000000000000000000000000000000000000000000000000000071700000000000000
.............................................................................................................................ATACACCAAGTTCAGTTTTG.........................................................................................................................................................20114.00140000001000000000000000001011000000000000000000000000000000000007000001020000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATA...................................................................................................................19114.00140040001000000000000000021112000000000020000000000000000000000000000000000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT.............................................................................................................25113.00130000200000000000000000000331000000000000000000000000000000000004000000000000000
.......................................................................................................................................................................CTGGGCTTTGTTTATCT..................................................................................................................17112.001200000000000000000000000000000000000000000000000000000000000000111000000000000000
..................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA................................................................................................................24112.00120040000000000000000000001021000000000000000000000000000000000002100000000100000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATTT.............................................................................................................23112.00120000000000000000000000000041000000000000000000000000000000000003200000002000000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTGT........................................................................................................................29111.00110000100000000000000000000002000000000000000000000000000000000051200000000000000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG..............................................................................................................24111.00110000000000000000000000000000000000000000000000000000000000000010100002111400000
..........................................................................................................................................................................GGCTTTGTTTATCTCAT...............................................................................................................17111.00110000000000000000000000000000000000000000000000000000000000000003800000000000000
........................................................................................................................................................................TGGGCTTTGTTTATCTCAT...............................................................................................................19111.00110010001000000000000000002121000000000000000000000000000000000001000010000100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATT...................................................................................................................19111.00110040100000000000000000010011000000000030000000000000000000000000000000000000000
........................................................................................................................ATGGGATACACCAAGTTCAGTT............................................................................................................................................................22110.00100000000010000000000000010122000000000000000000000000000000000000000000030000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATC...................................................................................................................18110.00100090000000000000000000000000000000000000000000000000000000000000000000000100000
droMoj3
TTTG-AACTTGAGATT-------------------------------------TGAAA-----------------------------TGT-G-----------ATTAAGGATTTCAATTTATGGGATACACTAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCA---AC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................22190827.009082789758767886901
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................21111568.001156811351028239157
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................2117938.007938793800000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................2317421.0074217397032217
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................2015279.005279511603729097
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................2011004.001004100400000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT...............................................................................................................221675.0067567500000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA...............................................................................................................231631.0063162500114
.....................................................................................................................................................................CACTGGGCTTTGTTTATCT..................................................................................................................191424.0042442400000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................221368.0036836201104
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................201322.0032232100001
....................................................................................................................................................................TCACTGGGCTTTGTTTATC...................................................................................................................191195.0019518801303
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT..............................................................................................................241118.0011811700001
....................................................................................................................................................................TCACTGGGCTTTGTTTAT....................................................................................................................18196.00969400101
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.................................................................................................................21188.00888800000
...........................................................................................................................GGATACACTAAGTTCAGTTTTG.........................................................................................................................................................22175.00757300020
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC...............................................................................................................23175.00757300020
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA................................................................................................................23166.00666600000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT...............................................................................................................21156.00565600000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA...............................................................................................................22154.00545400000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTC.................................................................................................................19145.00454500000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCA................................................................................................................19137.00373700000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCT................................................................................................................21131.00313100000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATT..............................................................................................................22130.00302900001
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG................................................................................................................22129.00292700002
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG...............................................................................................................23128.00282800000
........................................................................................................................................................................TGGGCTTTGTTTATCTCA................................................................................................................18124.00242400000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC................................................................................................................22119.00191711000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATA..............................................................................................................22116.00161600000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT..............................................................................................................23116.00161600000
......................................................................................................................................................................ACTGGGCTTTGTTTATCT..................................................................................................................18113.00131300000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.................................................................................................................21112.00121200000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA..............................................................................................................24111.00111100000
.....................................................................................................................................................................CACTGGGCTTTGTTTATC...................................................................................................................18110.00101000000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTT.................................................................................................................2018.008800000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCAT...............................................................................................................2018.008800000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.................................................................................................................2218.008800000
.........................................................................................................................TGGGATACACTAAGTTCAGTTT...........................................................................................................................................................2217.007700000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCA..................................................................................................................2017.007700000
............................................................................................................................GATACACTAAGTTCAGTTTTG.........................................................................................................................................................2117.007700000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAT...............................................................................................................2417.007700000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC...............................................................................................................2216.006600000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTCATT..............................................................................................................2116.006600000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT................................................................................................................2216.006600000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC..............................................................................................................2415.005500000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCC..................................................................................................................2015.005500000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCT............................................................................................................................2515.005500000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.................................................................................................................2115.005500000
.......................................................................................................................................................................CTGGGCTTTGTTTATCTC.................................................................................................................1815.005500000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCATA..............................................................................................................2314.004400000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT.............................................................................................................2514.004400000
....................................................................................................................................................................TCACTGGGCTTTGTTTATT...................................................................................................................1914.004400000
..................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA................................................................................................................2414.004400000
...................................................................................................................................................................ATCACTGGGCTTTGTTTATCT..................................................................................................................2114.004400000
........................................................................................................................................................................TGGGCTTTGTTTATCTCAT...............................................................................................................1913.003300000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGC.............................................................................................................................2412.002100001
....................................................................................................................................................................TCACTGGGCTTTGTTTATA...................................................................................................................1912.002200000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTGT........................................................................................................................2912.002200000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCG..................................................................................................................2012.002200000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGG..............................................................................................................................2312.002200000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAA.............................................................................................................2512.002200000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG..............................................................................................................2412.002200000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTT..........................................................................................................................2712.002200000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGG...............................................................................................................................2212.002200000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCG................................................................................................................2112.002200000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTG.........................................................................................................................2812.002200000
.................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGA.............................................................................................................................2412.002200000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT..............................................................................................................2412.002100001
....................................................................................................................................................................TCACTGGGCTTTGTTTAA....................................................................................................................1811.001100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.................................................................................................................2111.001000001
..........................................................................................................................GGGATACACTAAGTTCAGTTTT..........................................................................................................................................................2211.001100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTTT............................................................................................................2611.001100000
..........................................................................................................................GGGATACACTAAGTTCAGTTTG..........................................................................................................................................................2211.001100000
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG...............................................................................................................2211.001100000
...........................................................................................................................GGATACACTAAGTTCAGTTTT..........................................................................................................................................................2111.001100000
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAGG.............................................................................................................2511.001100000
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCATTT.............................................................................................................2311.001100000
droGri2
AG-C-CGG-T--TCGTCGT--------------------GGCATCTCGTTCA-GTTT----------------------AGT-----TCG-GCTCTGTTTGTGATTTCGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTAGTTCA---AC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA................................................................................................................22174.0074722
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.................................................................................................................21113.0013130
....................................................................................................................................................................TCACTGGGCTTTGTTTATCT..................................................................................................................2018.00880
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT...............................................................................................................2315.00550
....................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT................................................................................................................2213.00321
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTC.................................................................................................................2012.00220
.....................................................................................................................................................................CACTGGGCTTTGTTTATCTCA................................................................................................................2112.00220
......................................................................................................................................................................ACTGGGCTTTGTTTATCTCA................................................................................................................2011.00110

Generated: 10/20/2015 at 07:32 PM