ID:

der-mir-312-1

 Coordinate:

scaffold_4845:10618162-10618227 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.2 -26.4 -26.4

Flybase annnotation

utr3 [utr3_minus_3798]; pre_miRNA [Dere\mir-312-1-RM]; miRNA [Dere\miR-312-1-RA]

No Repeatable elements found

mature

  1. der-mir-312-2  scaffold_4845:10616704-10616725 -
  2. der-mir-312-1  scaffold_4845:10618164-10618185 -
star

  1. der-mir-312-2  scaffold_4845:10616744-10616766 -
  2. der-mir-312-1  scaffold_4845:10618201-10618223 -

Sense Strand Reads

TTAAAAATGACCATATTTATATAATTGATAATGTGAATTAAGTTTGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATTTTTAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAACAAAACATTTTAAATAAAAACTAATACTAGTTATAGGTGGT

***************************************..((((((((...((((((.(((..((((.(((((.((((........)).)).))))).))))..)))))))))....))))))))...************************************* 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 GSM1528801

follicle cells		 M057

embryo

 V107

male body		 V040

embryo

 V108

head

 V060

head
............................................................................................TATTGCACTTGAGACGGCCGGA.................................................... 22 0 2 6715.50 13431 9540 2149 694 664 247 121 16
............................................................................................TATTGCACTTGAGACGGCCGG..................................................... 21 0 2 1811.50 3623 2962 2 208 294 81 67 9
............................................................................................TATTGCACTTGAGACGGCCGGAA................................................... 23 1 2 1563.00 3126 2344 297 377 33 69 6 0
............................................................................................TATTGCACTTGAGACGGCCGGAAA.................................................. 24 2 2 992.00 1984 1799 21 130 4 29 1 0
............................................................................................TATTGCACTTGAGACGGCCGGAT................................................... 23 0 2 729.50 1459 645 583 75 118 15 18 5
............................................................................................TATTGCACTTGAGACGGCCG...................................................... 20 0 2 418.00 836 504 2 45 216 16 45 8
.............................................................................................ATTGCACTTGAGACGGCCGGA.................................................... 21 0 2 346.00 692 657 16 4 13 0 2 0
............................................................................................TATTGCACTTGAGACGGCCGGAAAA................................................. 25 2 2 231.00 462 439 3 18 1 1 0 0
............................................................................................TATTGCACTTGAGACGGCCGGT.................................................... 22 1 2 163.50 327 140 10 14 118 6 32 7
.............................................................................................ATTGCACTTGAGACGGCCGG..................................................... 20 0 2 90.00 180 168 0 2 8 0 2 0
............................................................................................TATTGCACTTGAGACGGCCGGAC................................................... 23 1 2 87.50 175 53 100 15 5 1 1 0
.............................................................................................ATTGCACTTGAGACGGCCGGAA................................................... 22 1 2 85.50 171 157 5 7 1 1 0 0
............................................................................................TATTGCACTTGAGACGGCCGGAAAAA................................................ 26 3 2 85.00 170 168 0 1 0 1 0 0
............................................................................................TATTGCACTTGAGACGGCCGGAAT.................................................. 24 1 2 57.50 115 40 51 12 9 3 0 0
.............................................................................................ATTGCACTTGAGACGGCCGGAAA.................................................. 23 2 2 54.00 108 107 0 0 1 0 0 0
............................................................................................TATTGCACTTGAGGCGGCCGGA.................................................... 22 1 2 48.00 96 10 86 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGTA.................................................... 22 1 2 46.50 93 82 1 1 6 2 1 0
............................................................................................TATTGCACTTGAGACGGCCGGTT................................................... 23 1 2 45.00 90 11 0 3 59 0 16 1
............................................................................................TATTGCACTTGAGACGGCCGT..................................................... 21 1 2 42.00 84 26 0 0 42 1 12 3
.............................................................................................ATTGCACTTGAGACGGCCGGAT................................................... 22 0 2 38.00 76 55 7 1 12 0 0 1
............................................................................................TATTGCACTTGAGACTGCCGGA.................................................... 22 1 2 36.00 72 68 0 1 0 1 2 0
............................................................................................TATTGCACTTGAGACGGCCGGATT.................................................. 24 0 2 35.50 71 14 32 3 19 1 2 0
............................................................................................TATTGCACTTGAGACGGCCTGA.................................................... 22 1 2 35.00 70 25 36 3 1 3 2 0
............................................................................................TATTGCCCTTGAGACGGCCGGA.................................................... 22 1 2 34.00 68 64 0 0 0 2 1 1
............................................................................................TATTGCACTTGAGACGGCCTGAT................................................... 23 1 2 30.50 61 1 56 0 3 0 1 0
............................................................................................TATTGCACTTGAGACGGCC....................................................... 19 0 2 30.00 60 18 0 14 19 1 8 0
............................................................................................TATTGCACTTGAGCCGGCCGGA.................................................... 22 1 2 28.50 57 3 52 0 0 2 0 0
............................................................................................TATTGCACTTGAGACGGCCGGATA.................................................. 24 1 2 23.50 47 33 6 1 3 1 3 0
............................................................................................TATTGCACTTGAGACGGCCGA..................................................... 21 1 2 22.50 45 25 0 17 0 3 0 0
............................................................................................TATTGCACTTGAGACGGCCGGAG................................................... 23 1 2 21.50 43 36 4 2 0 1 0 0
............................................................................................TATTGCACTTGAGACGGCCGTTT................................................... 23 2 2 21.00 42 3 0 0 31 0 8 0
............................................................................................TATTGCACTTGAGACGGCCGAA.................................................... 22 1 2 19.50 39 28 1 7 0 3 0 0
............................................................................................TATTGCACTTGAGACGGCCGGTA................................................... 23 2 2 19.00 38 14 8 2 10 0 3 1
............................................................................................TATTGCACTTGAGACGTCCGGA.................................................... 22 1 2 18.50 37 32 2 0 2 1 0 0
............................................................................................TATTGCACTTGAGACGGCCTGAA................................................... 23 2 2 18.00 36 6 29 0 0 1 0 0
............................................................................................TATTGCACTTGAGACGGCCGGTTT.................................................. 24 1 2 16.00 32 0 0 0 22 0 10 0
............................................................................................TGTTGCACTTGAGACGGCCGGA.................................................... 22 1 2 15.50 31 10 0 18 1 2 0 0
..............................................................................................TTGCACTTGAGACGGCCGGA.................................................... 20 0 2 15.00 30 29 0 0 1 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGTAA................................................... 23 2 2 15.00 30 28 0 0 2 0 0 0
............................................................................................TATTGCACTTGAGGCGGCCGGAT................................................... 23 1 2 14.50 29 0 26 1 1 0 1 0
............................................................................................TATTGAACTTGAGACGGCCGGA.................................................... 22 1 2 13.50 27 0 26 0 0 0 1 0
............................................................................................TATTGCAATTGAGACGGCCGGA.................................................... 22 1 2 13.50 27 10 11 5 0 1 0 0
............................................................................................TATTGCCCTTGAGACGGCCGG..................................................... 21 1 2 13.00 26 26 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCT...................................................... 20 1 2 13.00 26 1 0 0 20 0 4 1
............................................................................................TATTGCACTTGAGACGGCCGGC.................................................... 22 1 2 13.00 26 7 5 10 1 2 0 1
............................................................................................TATTGCACTTGAGACGGCCGTT.................................................... 22 2 2 12.50 25 2 0 0 19 0 3 1
............................................................................................TATTGCACTTGAGACGGACGGA.................................................... 22 1 2 12.50 25 22 2 0 0 1 0 0
............................................................................................TACTGCACTTGAGACGGCCGGA.................................................... 22 1 2 12.50 25 2 0 23 0 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCGGAAAA................................................. 24 2 2 12.00 24 24 0 0 0 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCG...................................................... 19 0 2 11.50 23 21 0 0 2 0 0 0
............................................................................................TATTGCACTTGAGACGCCCGGA.................................................... 22 1 2 11.50 23 22 0 0 1 0 0 0
............................................................................................TATTTCACTTGAGACGGCCGGA.................................................... 22 1 2 11.50 23 18 2 1 1 0 1 0
............................................................................................TATTGCACTTGAGCCGGCCGGAT................................................... 23 1 2 11.00 22 0 22 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGAAA................................................... 23 2 2 11.00 22 9 1 12 0 0 0 0
............................................................................................TATTGCAGTTGAGACGGCCGGA.................................................... 22 1 2 10.50 21 1 20 0 0 0 0 0
............................................................................................TATTGCACTTGTGACGGCCGGA.................................................... 22 1 2 10.50 21 21 0 0 0 0 0 0
............................................................................................TATTGCACTTTTCACGGCCGGA.................................................... 22 3 3 10.33 31 1 0 23 0 7 0 0
............................................................................................TATTGCACTTGAGACGGCCGGATAA................................................. 25 1 2 10.00 20 16 3 1 0 0 0 0
............................................................................................TATTGCACTTGATACGGCCGGA.................................................... 22 1 2 10.00 20 11 2 0 1 4 1 1
............................................................................................TATTGCACTTGAGACGGCCGGG.................................................... 22 1 2 9.50 19 9 5 0 1 4 0 0
............................................................................................TATTCCACTTGAGACGGCCGGA.................................................... 22 1 2 9.00 18 15 0 0 2 1 0 0
............................................................................................TATTGCACTTGAGACAGCCGGA.................................................... 22 1 2 9.00 18 16 0 0 1 1 0 0
............................................................................................AATTGCACTTGAGACGGCCGGA.................................................... 22 1 2 9.00 18 17 0 1 0 0 0 0
............................................................................................TATCGCACTTGAGACGGCCGGA.................................................... 22 1 2 9.00 18 9 1 5 3 0 0 0
...........................................................................................CTATTGCACTTGAGACGGCCGGA.................................................... 23 1 2 9.00 18 7 0 10 0 1 0 0
............................................................................................TATTGCACTTGAGACGGCCGGAAC.................................................. 24 2 2 9.00 18 4 0 12 1 1 0 0
............................................................................................TATTGCACTTGAGACGGCCGGATAAA................................................ 26 2 2 9.00 18 18 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGGCGGCCGGAA................................................... 23 2 2 8.50 17 3 14 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGACCGGA.................................................... 22 1 2 8.50 17 14 3 0 0 0 0 0
............................................................................................GATTGCACTTGAGACGGCCGGA.................................................... 22 1 2 8.00 16 11 0 3 2 0 0 0
............................................................................................TATTGCCCTTGAGACGGCCGGAA................................................... 23 2 2 8.00 16 16 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGTCGGCCGGA.................................................... 22 1 2 8.00 16 2 13 1 0 0 0 0
............................................................................................TGTTGCACTTGAGACGGCCGG..................................................... 21 1 2 8.00 16 5 0 11 0 0 0 0
............................................................................................TATTGCACTTGAGCCGGCCGGAA................................................... 23 2 2 7.50 15 0 14 0 0 1 0 0
............................................................................................TATTGCACTTGAGACGGC........................................................ 18 0 2 7.50 15 7 0 6 0 0 2 0
............................................................................................TATTGCACTTGAGACGGCCGGTAA.................................................. 24 3 2 7.50 15 10 0 1 3 1 0 0
............................................................................................TATAGCACTTGAGACGGCCGGA.................................................... 22 1 2 7.50 15 9 1 4 1 0 0 0
............................................................................................TATTGTACTTGAGACGGCCGGA.................................................... 22 1 2 7.00 14 13 0 0 0 1 0 0
............................................................................................TACTGCACTTGAGACGGCCGGAA................................................... 23 2 2 7.00 14 0 0 14 0 0 0 0
............................................................................................TATTGCACTTGAGACCGCCGGA.................................................... 22 1 2 7.00 14 11 0 0 0 2 1 0
...........................................................................................ATATTGCACTTGAGACGGCCGGAT................................................... 24 1 2 7.00 14 0 14 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCCGA.................................................... 22 1 2 7.00 14 5 0 0 0 9 0 0
............................................................................................TATTGCACTTGAGACTGCCGG..................................................... 21 1 2 7.00 14 10 0 0 1 2 1 0
............................................................................................TGTTGCACTTGAGACGGCCGGAA................................................... 23 2 2 6.50 13 1 0 12 0 0 0 0
............................................................................................TATTGCCCTTGAGACGGCCGGAAA.................................................. 24 3 2 6.50 13 13 0 0 0 0 0 0
............................................................................................TTTTGCACTTGAGACGGCCGGA.................................................... 22 1 2 6.50 13 5 0 7 0 1 0 0
............................................................................................TATTGCACTTGAGACGGCCTG..................................................... 21 1 2 6.50 13 7 4 0 1 1 0 0
............................................................................................TATTGCACTTGAGACGGCCGGTAT.................................................. 24 2 2 6.50 13 2 0 0 11 0 0 0
............................................................................................TATTGCACTGGAGACGGCCGGA.................................................... 22 1 2 6.50 13 4 9 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGAAG.................................................. 24 2 2 6.00 12 9 0 3 0 0 0 0
............................................................................................TATTGCACTTGAGACGGACGG..................................................... 21 1 2 6.00 12 11 0 0 0 0 1 0
............................................................................................TATTGCACTTGAGACGGCCTGATA.................................................. 24 2 2 6.00 12 0 12 0 0 0 0 0
............................................................................................TATTACACTTGAGACGGCCGGA.................................................... 22 1 2 6.00 12 9 2 0 0 0 1 0
............................................................................................TATTGCACTTGAGACGGGCGGA.................................................... 22 1 2 6.00 12 1 11 0 0 0 0 0
......................................................CGGTTCGTACCAGGAGCAATTCT......................................................................................... 23 0 2 5.50 11 5 0 0 4 0 2 0
............................................................................................TATTGCACTTGAGACGCCGGA..................................................... 21 3 4 5.50 22 8 13 1 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCAGGA.................................................... 22 1 2 5.50 11 0 9 0 1 0 1 0
............................................................................................TATTGCACTTGAGACGGCCGGACT.................................................. 24 1 2 5.50 11 1 10 0 0 0 0 0
..............................................................................................TTGCACTTGAGACGGCCGGAA................................................... 21 1 2 5.50 11 10 0 1 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGTAT................................................... 23 1 2 5.50 11 6 0 0 4 0 1 0
............................................................................................TATTGCACTTGAGACGGCCGGAAAT................................................. 25 3 2 5.50 11 7 2 1 0 1 0 0
............................................................................................TATTGCATTTGAGACGGCCGGA.................................................... 22 1 2 5.50 11 2 8 0 0 1 0 0
............................................................................................TATTGCACTTTTCACGGCCGG..................................................... 21 3 4 5.00 20 1 0 18 0 1 0 0
............................................................................................CATTGCACTTGAGACGGCCGGA.................................................... 22 1 2 4.50 9 6 0 2 1 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGATTT................................................. 25 1 2 4.50 9 2 0 1 5 0 0 1
............................................................................................TATGGCACTTGAGACGGCCGGAA................................................... 23 2 2 4.50 9 0 0 9 0 0 0 0
............................................................................................TATGGCACTTGAGACGGCCGGA.................................................... 22 1 2 4.50 9 0 0 9 0 0 0 0
............................................................................................TAGTGCACTTGAGACGGCCGGA.................................................... 22 1 2 4.50 9 6 1 0 2 0 0 0
............................................................................................TATTGCACTTGAGACGGTCGGA.................................................... 22 1 2 4.50 9 5 2 1 0 1 0 0
............................................................................................TATTGCACTTGAGACGTCCGGAA................................................... 23 2 2 4.50 9 9 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCTGGA.................................................... 22 1 2 4.50 9 3 4 0 0 1 1 0
............................................................................................TATTGCACTCGAGACGGCCGGA.................................................... 22 1 2 4.50 9 3 3 1 1 1 0 0
............................................................................................TATTGCACTTGAGACGGCCTGAAA.................................................. 24 3 2 4.50 9 3 6 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGAAAA.................................................. 24 3 2 4.50 9 5 0 1 0 3 0 0
..............................................................................................TTGCACTTGAGACGGCCGGAAA.................................................. 22 2 2 4.50 9 9 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGTCCGG..................................................... 21 1 2 4.50 9 6 0 1 0 1 1 0
...........................................................................................ATATTGCACTTGAGACGGCCGGAA................................................... 24 2 2 4.50 9 3 6 0 0 0 0 0
............................................................................................TATTGCACTTGAGACTGCCGGAA................................................... 23 2 2 4.00 8 8 0 0 0 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCGGT.................................................... 21 1 2 4.00 8 5 0 0 3 0 0 0
............................................................................................TATTGCACTTGAGACGGACGGAAA.................................................. 24 3 2 4.00 8 7 1 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGTAAA.................................................. 24 3 2 4.00 8 8 0 0 0 0 0 0
...........................................................................................TTATTGCACTTGAGACGGCCGGA.................................................... 23 1 2 4.00 8 8 0 0 0 0 0 0
..............................................................................................TTGCACTTGAGACGGCCGGAT................................................... 21 0 2 4.00 8 3 5 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGAAAC................................................. 25 3 2 4.00 8 6 0 2 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGTAAA................................................. 25 3 2 4.00 8 8 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGACGGAA................................................... 23 2 2 4.00 8 7 0 0 1 0 0 0
............................................................................................GATTGCACTTGAGACGGCCGG..................................................... 21 1 2 4.00 8 7 0 0 1 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGATAAAA............................................... 27 3 2 4.00 8 8 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCCG..................................................... 21 1 2 4.00 8 1 0 0 0 7 0 0
.......................................................................................GTGAATATTGCACTTGAGACGGCCGGA.................................................... 27 3 2 4.00 8 0 8 0 0 0 0 0
...........................................................................................ATATTGCACTTGAGACGGCCTGA.................................................... 23 2 2 4.00 8 0 8 0 0 0 0 0
............................................................................................TATTGCACTTTAGACGGCCGGA.................................................... 22 1 2 3.50 7 2 3 0 0 2 0 0
............................................................................................TATTGCACTTGAGACGGCCGGTTTT................................................. 25 2 2 3.50 7 0 0 0 5 0 2 0
............................................................................................TATTGCACTTGACACGGCCGGA.................................................... 22 1 2 3.50 7 7 0 0 0 0 0 0
............................................................................................TATTGAACTTGAGACGGCCGGAA................................................... 23 2 2 3.50 7 0 7 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCA...................................................... 20 1 2 3.50 7 2 0 0 4 1 0 0
............................................................................................TGTTGCACTTGAGACGGCCGGAAA.................................................. 24 3 2 3.50 7 5 0 2 0 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCGGG.................................................... 21 1 2 3.50 7 7 0 0 0 0 0 0
............................................................................................TTTTGCACTTGAGACGGCCGGAA................................................... 23 2 2 3.50 7 1 0 6 0 0 0 0
...........................................................................................GTATTGCACTTGAGACGGCCGGA.................................................... 23 0 2 3.50 7 3 4 0 0 0 0 0
............................................................................................TATTGCACTTGAGACTGCCGGAAA.................................................. 24 3 2 3.50 7 7 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACCGCCGGAAA.................................................. 24 3 2 3.00 6 5 0 0 0 1 0 0
.............................................................................................ATTGCACTTGAGACGGCCGGAAAAA................................................ 25 3 2 3.00 6 6 0 0 0 0 0 0
......................................................CGGTTCGTACCAGGAGCAATTC.......................................................................................... 22 0 2 3.00 6 6 0 0 0 0 0 0
............................................................................................TATTGCACTTGTGACGGCCGGAAA.................................................. 24 3 2 3.00 6 6 0 0 0 0 0 0
............................................................................................TATCGCACTTGAGACGGCCGG..................................................... 21 1 2 3.00 6 2 0 4 0 0 0 0
...........................................................................................CTATTGCACTTGAGACGGCCGGAA................................................... 24 2 2 3.00 6 4 0 2 0 0 0 0
............................................................................................TACTGCACTTGAGACGGCCGG..................................................... 21 1 2 3.00 6 1 0 5 0 0 0 0
............................................................................................TATTGCACTTGATACGGCCGGAA................................................... 23 2 2 3.00 6 3 0 0 0 3 0 0
............................................................................................TATTGCACTTGAGACGGCCGGTTAT................................................. 25 3 2 3.00 6 0 0 0 5 0 1 0
............................................................................................TATTCCACTTGAGACGGCCGGAAA.................................................. 24 3 2 3.00 6 6 0 0 0 0 0 0
...........................................................................................GTATTGCACTTGAGACGGCCGG..................................................... 22 0 2 3.00 6 6 0 0 0 0 0 0
............................................................................................TATTGCACTAGAGACGGCCGGA.................................................... 22 1 2 3.00 6 2 3 1 0 0 0 0
............................................................................................TATTGCACTTGAGGCGGCCTGA.................................................... 22 2 2 3.00 6 0 6 0 0 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCGGAC................................................... 22 1 2 3.00 6 5 0 0 1 0 0 0
............................................................................................TATTGCACTTGAGACGACCGGAAA.................................................. 24 3 2 3.00 6 6 0 0 0 0 0 0
............................................................................................TATTGCACTTAAGACGGCCGGA.................................................... 22 1 2 3.00 6 5 0 1 0 0 0 0
............................................................................................TATCGCACTTGAGACGGCCGGAAA.................................................. 24 3 2 3.00 6 4 0 2 0 0 0 0
............................................................................................TATTGCAATTGAGACGGCCGTA.................................................... 22 2 2 3.00 6 6 0 0 0 0 0 0
............................................................................................TATAGCACTTGAGACGGCCGG..................................................... 21 1 2 3.00 6 2 0 4 0 0 0 0
............................................................................................TAGTGCACTTGAGACGGCCGG..................................................... 21 1 2 3.00 6 6 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGCCCGGAA................................................... 23 2 2 3.00 6 5 1 0 0 0 0 0
............................................................................................CATTGCACTTGAGACGGCCGGAA................................................... 23 2 2 3.00 6 5 0 1 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGC..................................................... 21 1 2 3.00 6 5 0 0 0 0 1 0
............................................................................................TATTGCACTTGATACGGCCGG..................................................... 21 1 2 3.00 6 4 0 0 0 1 1 0
............................................................................................TATTGCACTTGAGACTGCCGGAT................................................... 23 1 2 3.00 6 4 1 0 1 0 0 0
............................................................................................TATGGCACTTGAGACGGCCGGAAA.................................................. 24 3 2 3.00 6 0 1 5 0 0 0 0
............................................................................................TATTGCACTTGAGACAGCCGGAA................................................... 23 2 2 2.50 5 4 0 0 0 1 0 0
............................................................................................TATTCCACTTGAGACGGCCGGAA................................................... 23 2 2 2.50 5 5 0 0 0 0 0 0
............................................................................................TATTGCACTTGTGACGGCCGG..................................................... 21 1 2 2.50 5 5 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGATGGCCGGA.................................................... 22 1 2 2.50 5 3 0 1 1 0 0 0
............................................................................................TATTGCACTTGAGACGGCCAGA.................................................... 22 1 2 2.50 5 5 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGCA................................................... 23 2 2 2.50 5 1 0 1 0 3 0 0
............................................................................................TATTGCACTTGCGACGGCCGGA.................................................... 22 1 2 2.50 5 2 0 0 1 1 1 0
............................................................................................TATTGCACTTGAAACGGCCGGA.................................................... 22 1 2 2.50 5 5 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGAATT................................................. 25 2 2 2.50 5 3 0 0 1 1 0 0
..............................................................................................TTGCACTTGAGACGGCCGG..................................................... 19 0 2 2.50 5 5 0 0 0 0 0 0
.........................................................................................TAATATTGCACTTGAGACGGCCGGA.................................................... 25 1 2 2.50 5 0 5 0 0 0 0 0
...........................................................................................ATATTGCACTTGAGACGGCCGGA.................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCCGAA................................................... 23 2 2 2.50 5 4 0 0 0 1 0 0
............................................................................................TATTGCACTTGAGACGTCCGGAAA.................................................. 24 3 2 2.50 5 5 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCGGGA.................................................... 22 1 2 2.50 5 4 1 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGATTCAC............................................... 27 3 2 2.50 5 0 5 0 0 0 0 0
............................................................................................AATTGCACTTGAGACGGCCGG..................................................... 21 1 2 2.50 5 4 0 1 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGATTTT................................................ 26 2 2 2.50 5 0 2 0 3 0 0 0
............................................................................................TATTGCACTTGAGACGGTCGGAA................................................... 23 2 2 2.50 5 2 0 3 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGCAA.................................................. 24 3 2 2.50 5 1 0 1 0 3 0 0
............................................................................................TATTGCACTTGAGACGGCCTGAAAA................................................. 25 3 2 2.50 5 2 3 0 0 0 0 0
............................................................................................TATTGCATTTGAGACGGCCGGAT................................................... 23 1 2 2.00 4 0 4 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGAAAAG................................................ 26 3 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TATTGTACTTGAGACGGCCGGAA................................................... 23 2 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TATTTCACTTGAGACGGCCGG..................................................... 21 1 2 2.00 4 3 0 1 0 0 0 0
...........................................................................................CTATTGCACTTGAGACGGCCGGAAA.................................................. 25 3 2 2.00 4 0 0 4 0 0 0 0
............................................................................................TATTGCACTTGAGACGTCCGGAAAA................................................. 25 3 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGCCCGGAAAA................................................. 25 3 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TATTGCCCTTGAGACGGCCGGAAAA................................................. 25 3 2 2.00 4 4 0 0 0 0 0 0
...........................................................................................GTATTGCACTTGAGACGGCCGGAA................................................... 24 1 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TATGGCACTTGAGACGGCCGG..................................................... 21 1 2 2.00 4 0 0 4 0 0 0 0
.............................................................................................ATTGCACTTGAGACGTCCGGA.................................................... 21 1 2 2.00 4 3 0 0 1 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGATAT................................................. 25 2 2 2.00 4 3 0 0 1 0 0 0
............................................................................................TATTGCAATTGAGACGGCCGG..................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGCA.................................................... 22 1 2 2.00 4 3 0 0 0 1 0 0
............................................................................................TACTGCACTTGAGACGGCCGGAT................................................... 23 1 2 2.00 4 0 0 3 0 0 1 0
............................................................................................TATTGCACTTGAGGCGGCCGGAC................................................... 23 2 2 2.00 4 0 4 0 0 0 0 0
.............................................................................................ATTGCACTTGAGACTGCCGGA.................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
.......................................................................................CTTAATATTGCACTTGAGACGGCCGGA.................................................... 27 3 2 2.00 4 0 4 0 0 0 0 0
............................................................................................TATTGCACTTGAGATGGCCGGAA................................................... 23 2 2 2.00 4 2 1 1 0 0 0 0
............................................................................................CATTGCACTTGAGACGGCCGGAAA.................................................. 24 3 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TATTCCACTTGAGACGGCCGG..................................................... 21 1 2 2.00 4 3 0 0 1 0 0 0
............................................................................................TATTGCAATTGAGACGGCCGGAAA.................................................. 24 3 2 2.00 4 4 0 0 0 0 0 0
...........................................................................................TTATTGCACTTGAGACGGCCGG..................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TACTGCACTTGAGACGGCCGGAAA.................................................. 24 3 2 2.00 4 0 0 4 0 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCGGATT.................................................. 23 0 2 2.00 4 3 0 0 1 0 0 0
............................................................................................TATTGCTCTTGAGACGGCCGGA.................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACCGCCGG..................................................... 21 1 2 2.00 4 3 0 0 1 0 0 0
............................................................................................TATTGCACTTGAGTCGGCCGGAA................................................... 23 2 2 2.00 4 3 1 0 0 0 0 0
...............................................................................................TGCACTTGAGACGGCCGGA.................................................... 19 0 2 2.00 4 2 0 1 0 0 1 0
............................................................................................TATTGCACTTGAGACGGCCGGAAAAC................................................ 26 2 2 2.00 4 4 0 0 0 0 0 0
............................................................................................GATTGCACTTGAGACGGCCG...................................................... 20 1 2 2.00 4 2 0 2 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGTTA.................................................. 24 2 2 2.00 4 0 0 0 4 0 0 0
............................................................................................GATTGCACTTGAGACGGCCGGAA................................................... 23 2 2 2.00 4 1 0 2 0 1 0 0
............................................................................................TATTGCAGTTGAGACGGCCGGAT................................................... 23 1 2 2.00 4 0 4 0 0 0 0 0
............................................................................................TATTGCACTTGGGACGGCCGG..................................................... 21 1 2 2.00 4 3 0 0 1 0 0 0
...........................................................................................TTATTGCACTTGAGACGGCCG...................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGTCCG...................................................... 20 1 2 2.00 4 3 0 0 0 1 0 0
............................................................................................TATTGCACTTGAGACGGCCGGTG................................................... 23 2 2 2.00 4 0 0 0 1 0 3 0
............................................................................................TATTGCACTTGGGACGGCCGGA.................................................... 22 1 2 2.00 4 3 1 0 0 0 0 0
............................................................................................TATTGCACTTCAGACGGCCGGA.................................................... 22 1 2 2.00 4 3 0 0 0 1 0 0
............................................................................................TATTGCAATTGAGGCGGCCGGA.................................................... 22 2 2 2.00 4 0 4 0 0 0 0 0
............................................................................................TATTGCACTTGAGGCGGCCGGATT.................................................. 24 1 2 2.00 4 0 4 0 0 0 0 0
............................................................................................TATTGCACTTGACACGGCCGG..................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TGTTGCACTTGAGACGGCCGGAT................................................... 23 1 2 2.00 4 0 0 4 0 0 0 0
............................................................................................TATTGCACTTGAGATGGCCGG..................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
............................................................................................TACTGCACTTGAGACGGCCG...................................................... 20 1 2 2.00 4 1 0 3 0 0 0 0
............................................................................................TGTTGCACTTGAGACGGCCGGT.................................................... 22 2 2 2.00 4 0 0 3 1 0 0 0
............................................................................................TATTGCACTTGAGGCGGCCGG..................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCGAA.................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATCGCACTTGAGACGGCCGGAA................................................... 23 2 2 1.50 3 1 0 1 0 1 0 0
............................................................................................TATTGCACTTGAGACGGT........................................................ 18 1 2 1.50 3 0 0 0 1 0 2 0
............................................................................................TATTTCACTTGAGACGGCCG...................................................... 20 1 2 1.50 3 1 0 0 1 0 1 0
............................................................................................TATTGCACTTGATACGGCCGGAAA.................................................. 24 3 2 1.50 3 2 0 0 0 1 0 0
............................................................................................TATTGCACTTGAGACGGCCGGAACT................................................. 25 3 2 1.50 3 2 0 1 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCAGGT.................................................... 22 2 2 1.50 3 0 0 0 1 1 1 0
............................................................................................TATTGCACTTGAGACGGCAGGAT................................................... 23 1 2 1.50 3 0 3 0 0 0 0 0
............................................................................................TATTGCAGTTGAGGCGGCCGGA.................................................... 22 2 2 1.50 3 0 3 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCC...................................................... 20 1 2 1.50 3 3 0 0 0 0 0 0
.............................................................................................ATTCCACTTGAGACGGCCGG..................................................... 20 1 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCACATGAGACGGCCGGA.................................................... 22 1 2 1.50 3 2 1 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGACCGGAA................................................... 23 2 2 1.50 3 1 1 1 0 0 0 0
............................................................................................TATTGCACTTGAGAAGGCCGGA.................................................... 22 1 2 1.50 3 0 0 3 0 0 0 0
.............................................................................................TATGCACTTGAGACGGCCGGA.................................................... 21 2 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGATTC................................................. 25 1 2 1.50 3 0 3 0 0 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCGAAAA.................................................. 23 3 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGATC.................................................. 24 1 2 1.50 3 0 2 0 0 1 0 0
............................................................................................TATTGTACTTGAGACGGCCGG..................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................CTTAATATTGCACTTGAGACGGCCGGAT................................................... 28 3 2 1.50 3 0 3 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGACGGAAAA................................................. 25 3 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCAATTGAGACGGCCGGAT................................................... 23 1 2 1.50 3 1 2 0 0 0 0 0
............................................................................................TATTGCACTTGTGACGGCCGGAA................................................... 23 2 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCAGTTGAGACGGCCGGAA................................................... 23 2 2 1.50 3 1 2 0 0 0 0 0
............................................................................................TATTGCACTTGAGAAGGCCGGAAA.................................................. 24 3 2 1.50 3 0 0 3 0 0 0 0
...........................................................................................CTATTGCACTTGAGACGGCCGG..................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACAGCCGG..................................................... 21 1 2 1.50 3 2 0 0 1 0 0 0
............................................................................................TTTTGCACTTGAGACGGCCGG..................................................... 21 1 2 1.50 3 1 0 1 1 0 0 0
............................................................................................TATCGCACTTGAGACGGCCG...................................................... 20 1 2 1.50 3 1 0 1 0 0 1 0
............................................................................................TATTGCACTTGAGACGGCCGGTATT................................................. 25 3 2 1.50 3 1 0 0 1 0 1 0
............................................................................................TATTGCACTTGAGACGACCGGAT................................................... 23 1 2 1.50 3 1 2 0 0 0 0 0
............................................................................................TATTGCACTTGAGACCGCCGGAA................................................... 23 2 2 1.50 3 3 0 0 0 0 0 0
............................................................................................AATTGCACTTGAGACGGCCGGAA................................................... 23 2 2 1.50 3 2 0 1 0 0 0 0
............................................................................................TATTGCACTTGATACGGCCTGA.................................................... 22 2 2 1.50 3 2 0 0 0 1 0 0
............................................................................................TATTGAACTTGAGACGGCCGGAT................................................... 23 1 2 1.50 3 0 3 0 0 0 0 0
............................................................................................TATTGCAATTGAGACGGCCGGAA................................................... 23 2 2 1.50 3 2 0 1 0 0 0 0
............................................................................................TATTGCAGTTGAGGCGGCCGGAT................................................... 23 2 2 1.50 3 0 3 0 0 0 0 0
............................................................................................CATTGCACTTGAGACGGCCGG..................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGACGGAT................................................... 23 1 2 1.50 3 2 1 0 0 0 0 0
...................................................................................................CTTGAGACGGCCGGA.................................................... 15 0 2 1.50 3 0 3 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCGGGA................................................... 23 2 2 1.50 3 0 0 0 0 3 0 0
............................................................................................TATTGCACTTGAGACGGCCGTTAT.................................................. 24 3 2 1.50 3 0 0 0 3 0 0 0
............................................................................................TGTTGCACTTGAGACGGCCG...................................................... 20 1 2 1.50 3 1 0 0 2 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCGGTT................................................... 22 1 2 1.50 3 2 0 0 0 0 1 0
............................................................................................TATTGCACTTGAAACGGCCGG..................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TTTTGCACTTGAGACGGCCGGAT................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGGCGGAT................................................... 23 1 2 1.50 3 0 3 0 0 0 0 0
...........................................................................................TTATTGCACTTGAGACGGCCGGAA................................................... 24 2 2 1.50 3 2 0 1 0 0 0 0
.............................................................................................ATTGCAATTGAGACGGCCGGA.................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGTACTTGAGACGGCCGGAAA.................................................. 24 3 2 1.50 3 2 0 1 0 0 0 0
............................................................................................TATTGCACTTGAGCCGGCCGGATT.................................................. 24 1 2 1.50 3 0 3 0 0 0 0 0
............................................................................................TATTACACTTGAGACGGCCGGAT................................................... 23 1 2 1.50 3 2 0 0 0 1 0 0
............................................................................................TATTGCACTTGAGACGACCGG..................................................... 21 1 2 1.50 3 2 0 0 0 1 0 0
............................................................................................TATTGAACTTGAGACGGCCTGAT................................................... 23 2 2 1.50 3 0 3 0 0 0 0 0
............................................................................................TATTTCACTTGAGACGGCCGGAA................................................... 23 2 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGCCCGGAT................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCACCTGAGACGGCCGGA.................................................... 22 1 2 1.50 3 2 0 1 0 0 0 0
............................................................................................TATTTCACTTGAGACGGCCGGAAA.................................................. 24 3 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGGCGGCCGGAAA.................................................. 24 3 2 1.50 3 1 2 0 0 0 0 0
.............................................................................................ATTGCACTTGAGACTGCCGGAA................................................... 22 2 2 1.50 3 3 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGATGGCCGGAAA.................................................. 24 3 3 1.33 4 1 3 0 0 0 0 0
.............................................................................................TATTCACTTGAGACGGCCGGA.................................................... 21 3 4 1.25 5 5 0 0 0 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCGGATA.................................................. 23 1 2 1.00 2 2 0 0 0 0 0 0
.............................................................................................ATTGCACTTGAGACGGCCGTAA................................................... 22 2 2 1.00 2 2 0 0 0 0 0 0
............................................................................................TATTGCACTTGAGACGGCCCGC.................................................... 22 2 2 1.00 2 0 0 0 0 2 0 0

Anti-sense strand reads

AATTTTTACTGGTATAAATATATTAACTATTACACTTAATTCAAACTTCGCGAAGCCAAGCATGGTCCTCGTTAAGACGTAAAAATTCGATCATAACGTGAACTCTGCCGGCCTAATGAAAATTTGTTTTGTAAAATTTATTTTTGATTATGATCAATATCCACCA

*************************************..((((((((...((((((.(((..((((.(((((.((((........)).)).))))).))))..)))))))))....))))))))...*************************************** 		Read size # Mismatch Hit Count Total Norm Total V040

embryo
.............................................................................................................................GAATTGTAAATTTTATTTTTGA................... 22 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4845:10618112-10618277 - der-mir-312-1 Known_mirbase TT------AAAAATGACCATATTTATAT------AATT---GATAATG---TGA--ATTAAGTTTGAAGCGCTTCGGTTCGTACCAGG-AGCAATTCTGCATT----TT--TAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAA-CAAAACATTTT--AA--ATAAAAA-----------------------C---T-----------A------------------A------------------------------------------------------------------------------------TACTAGTTA----------TAGGT-GGT
droYak3 2R:12724644-12724798 + dya-mir-312 Known_mirbase AT------AACAATTACCATATTTATAT------TATTATAAATAAAGTTACAA--ATTGCGTTTGAAGCGCTTCGGTTCGTCCCAGG-AGCAATTCTGCACT----ATT-AAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAA-CGAATCATTT--AA---ACAAC-------------------------GCATT----------------------------------------------------------------------------------------------------------------------------------------------A
droSec2 scaffold_1:14025703-14025881 - dse-mir-312 Known_mirbase CT------AACAATTTAAATTTTTAAAT------TATTATAAATAATG---GGA--ATTAAGTTTAAAGCGTTTTGGTTCGTCACAAG-GGCAATTCTGCATT----TT--TAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAA-AGAATCATCATTGA---GCAAA-------------------------G---T-----------------------------AATTAGTT-------------------------------------------TTTTT------------------------------TCCTTGCAA----------TAGGC-GGC
droSim2 2r:17040968-17041145 - dsi-mir-312 Known_mirbase CT------AACAATTTAAATTTTTAAAT------TATTATAAATAATG---TGA--ATTAAGTTTAAAGCGTTTTGGTTCGTCACAAG-GGCAATTCTGCATT----TT--TAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAA-AGAATCATCATTGA---GCAAA-------------------------G---T-----------------------------AATTAGTT-------------------------------------------TTTT-------------------------------TCCTTGCAA----------TAGGC-GGC
dm3 chr2R:16471488-16471676 - dme-mir-312 Known_mirbase CT------AACAATTAGCATTTTTAAAT------TATTAGA---AATG---TGA--ATTAAGTTTGAAGCGATTTGGTTCGTCACAAG-GGCAATTCTGCATT----TT--TTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAA-CGAATCATTTT--ATGAGCAAA-------------------------G---T-----------------------------AATTAGTT-------------------------------------------TTGTT------------------GTGTTTTTAAACTCCTTGCAA----------TAGGC-GGC
droEug1 scf7180000409474:1490017-1490226 + AG------ACGGCTT---------AAGTGAAA-------------TTT---AAA--ATAAAATTTCTAGTATTTCGGTTCGCCTTTTG-TGCAATTTTAGAGT----CA----ATAGAAAATTGCACTTCAGACGGCCGGATGACTTGAAATACAAAACATCTT--A---AAA---TCTAGAAAA---------------C---T-----------A------------------A----------------------------------------GTGTTAATTTTTTGTTA-ATAGTTGTAGTTTTCGGCTTATAAAGTTCCAGCAGAATAAATAAATAGTTGGGA
droBia1 scf7180000302291:2816202-2816376 + GC------GGAGGTGAT-A--------------------------------TAGGC---ATATTTTTGGCGTTTCGGTCCGTCCCAGG-AGCAATCCTGTATT----TC---CGACTAGAATTGCACTTGAGACGGCCGGAGTGCTTGAAAA-CAAGGAA---------------------A------------------G---TGCATAGAAACTAACTTAAAACTAGCAGTCGACCAGCTTTATTTTGCAGGCC---------------------------------------------------------------------GAGG----------TGGGT-GGC
droTak1 scf7180000415401:99897-100095 - CAGT----GACAGT------GTAAAAATTGTGTG------------TG---TAAAC---ATATTTCTGGTGTTCCGGTCCGTCTCAGG-CGCAATTCTGAATT----TT---CACCTAGTATTGCACTTGAGACGGCCGGAATACTTTAAATACGAAACATAA--AA---ATGAAA-------------------------------------------ATAATAGTGA----AACTTTGCTGTAATTTACATGTCGCGGGCGGTGACAATGCGAGTTAT--G----------------------------------------------------------TTT-ATT
droEle1 scf7180000491201:736175-736356 - CA------GTGAA----AACATTTAAATTTTATC------------TG---TGTAC---TAATTTCTGGTGTTTCGGTACGTCTATGG-GGCAATTCTGCGTT----TT--CTGGTTAGCATTGCACTTGAGACGGCCGCAACACTTTGGAATAAAAACATTT--AA---GACAGT-------------------------------------------TTAAGAAAATATTTAATTCGGCATTAATTTATA------------------------------------------------------------------------TGTCG----------CTGGC-GGT
droRho1 scf7180000780104:82194-82448 - CA------GTGC----AAATATTTAAATATAATC------------TG---CGAAC---AAATTTCTGGTGTTTCGGCTCGTCTCAAA-AGCAATTCTTCGTT----TTTCTTGGCTAGCATTGCACTTGAGACGGCCGCAATACTTTGGATTTAAAACATTT--AA---GCAAGT-------------------------------------------TTATTGAAAAAGTTATTTTTGCATTAATTTATATGTCGCTGGCGGTGACAATACAAGTTGTTGGTTTTTTTTCGTATTGCACTG-GCCCCGGCTTATAAAATCCTGGCAT----------TAAAC-GGC
droFic1 scf7180000454039:1776229-1776397 - CT------AAAGTTTGC-AAGTTTTAATTAAATC------------GG--GAAAAC---CAATTTCGAGTGTTTCGGT-CGTCTTGGGTGGCAATACTAAATTAACTTT--ATGGCTAGCATTGCACTTGAGACGGCCGAAATGCTTTAAATTTATAACATCT--AA---GCAAGACCCAAA----------------------------------------------------------------AT------------------------------------------------------------------------TCTGAGCCG----------TGGAC-AGT
droKik1 scf7180000302471:941800-941934 - TTCTTGAAAGAAGATAAACA-------------------------------AAA--GCTCCGGCCGTAAAGGTCTGTGCTGTTTGAGG-TGCAAATCTGTGGT----TA--ATAGCCAGAATTGCACTTGAAACGGCCAGATCAAGGCGGCC-CAAAACATCGC--A---ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAT-TTA
droAna3 scaffold_13266:4132634-4132890 + dan-mir-312 Known_mirbase AT------AAAAAATAAATAATAGTGTT------TG---TGCTTTTTA---AAA--AAAACATCTACAATTTTCCGGTGCGTCTCTAG-TGCAACTCTTGGTT----TTT-TATACAAGTATTGCACTTGAGACGGCCGAAATATAGTGGAT-CTAAGCGGCTA--T---AAC---CGAAAAGTTTTCAGGAGCTAAAAAG---TGTTTAG----------------------AACTTCGATTTTATTTGTAGGTCGCGGAAGGTTGCAATGCGTATTTT--G-----AATCGTATTGCACTT-TCCCCGGCCCATAGA----------------------TAT-TAT
droBip1 scf7180000396427:2575351-2575548 + AA------AAAAAAATAATAATTGCAAG------TG---TGTGTGTTT---GGA--TTTATGTCTACAATTTTCGGGGTCATCTCCAG-TGCAAATCTTGGTT----TTT-CCAACAAGAATTGCACTCGAGACGGCCAGAATATTGTGGAT-CTATGCAGCTA--C---AAG---CCGAAAGTGTTTAGAAGTTAGCAAG---TGATTAT----------------------GATTTCGA-------------------------------------------------------------------------------TTTTATTTG----------TAGGT-TGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
TT------AAAAATGACCATATTTATAT------AATT---GATAATG---TGA--ATTAAGTTTGAAGCGCTTCGGTTCGTACCAGG-AGCAATTCTGCATT----TT--TAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAA-CAAAACATTTT--AA--ATAAAAA-----------------------C---T-----------A------------------A------------------------------------------------------------------------------------TACTAGTTA----------TAGGT-GGTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................................................................TATTGCACTTGAGACGGCCGGA...............................................................................................................................................................................................................2226715.50134319540694162476641212149
.......................................................................................................................TATTGCACTTGAGACGGCCGG................................................................................................................................................................................................................2121811.5036232962208981294672
.......................................................................................................................TATTGCACTTGAGACGGCCGGAA..............................................................................................................................................................................................................2321563.0031262344377069336297
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAA.............................................................................................................................................................................................................242992.00198417991300294121
.......................................................................................................................TATTGCACTTGAGACGGCCGGAT..............................................................................................................................................................................................................232729.5014596457551511818583
.......................................................................................................................TATTGCACTTGAGACGGCCG.................................................................................................................................................................................................................202418.0083650445816216452
........................................................................................................................ATTGCACTTGAGACGGCCGGA...............................................................................................................................................................................................................212346.0069265740013216
.......................................................................................................................TATTGCACTTGAGACGGCCGGT...............................................................................................................................................................................................................222163.5032714014761183210
........................................................................................................................ATTGCACTTGAGACGGCCGG................................................................................................................................................................................................................20290.00180168200820
.......................................................................................................................TATTGCACTTGAGACGGCCGGAC..............................................................................................................................................................................................................23287.5017553150151100
........................................................................................................................ATTGCACTTGAGACGGCCGGAA..............................................................................................................................................................................................................22285.50171157701105
........................................................................................................................ATTGCACTTGAGACGGCCGGAAA.............................................................................................................................................................................................................23254.00108107000100
.......................................................................................................................TATTGCACTTGAGACGGCCGT................................................................................................................................................................................................................21242.00842603142120
........................................................................................................................ATTGCACTTGAGACGGCCGGAT..............................................................................................................................................................................................................22238.0076551101207
.......................................................................................................................TATTGCACTTGAGACGGCCGGATT.............................................................................................................................................................................................................24235.50711430119232
.......................................................................................................................TATTGCACTTGAGACGGCC..................................................................................................................................................................................................................19230.00601814011980
.......................................................................................................................TATTGCACTTGAGACGGCCGGATA.............................................................................................................................................................................................................24223.504733101336
.......................................................................................................................TATTGCACTTGAGACGGCCGA................................................................................................................................................................................................................21222.5045251703000
.......................................................................................................................TATTGCACTTGAGACGGCCGGAG..............................................................................................................................................................................................................23221.504336201004
.......................................................................................................................TATTGCACTTGAGACGGCCGGTA..............................................................................................................................................................................................................23219.0038142101038
.........................................................................................................................TTGCACTTGAGACGGCCGGA...............................................................................................................................................................................................................20215.003029000100
.......................................................................................................................TATTGCACTTGAGACGGCCT.................................................................................................................................................................................................................20213.002610102040
.......................................................................................................................TATTGCACTTGAGACGGCCGGC...............................................................................................................................................................................................................22213.002671012105
.......................................................................................................................TATTGCACTTGAGACGGCCGTT...............................................................................................................................................................................................................22212.502520101930
........................................................................................................................ATTGCACTTGAGACGGCCG.................................................................................................................................................................................................................19211.502321000200
.......................................................................................................................TATTGCACTTGAGACGGCCGGG...............................................................................................................................................................................................................2229.50199004105
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAC.............................................................................................................................................................................................................2429.001841201100
.......................................................................................................................TATTGCACTTGAGACGGC...................................................................................................................................................................................................................1827.50157600020
.......................................................................................................................TATTGCACTTGAGACGGCCGGTAA.............................................................................................................................................................................................................2427.501510101300
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAG.............................................................................................................................................................................................................2426.00129300000
..........................................................................CGGTTCGTACCAGG-AGCAATTCT..........................................................................................................................................................................................................................................................2325.50115000420
.........................................................................................................................TTGCACTTGAGACGGCCGGAA..............................................................................................................................................................................................................2125.501110100000
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAAT............................................................................................................................................................................................................2525.50117101002
.......................................................................................................................TATTGCACTTGAGACGGCCGGATTT............................................................................................................................................................................................................2524.5092110500
.........................................................................................................................TTGCACTTGAGACGGCCGGAAA.............................................................................................................................................................................................................2224.5099000000
........................................................................................................................ATTGCACTTGAGACGGCCGGT...............................................................................................................................................................................................................2124.0085000300
.........................................................................................................................TTGCACTTGAGACGGCCGGAT..............................................................................................................................................................................................................2124.0083000005
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAAC............................................................................................................................................................................................................2524.0086200000
.......................................................................................................................TATTGCACTTGAGACGGCCA.................................................................................................................................................................................................................2023.5072001400
........................................................................................................................ATTGCACTTGAGACGGCCGGG...............................................................................................................................................................................................................2123.5077000000
......................................................................................................................GTATTGCACTTGAGACGGCCGGA...............................................................................................................................................................................................................2323.5073000004
..........................................................................CGGTTCGTACCAGG-AGCAATTC...........................................................................................................................................................................................................................................................2223.0066000000
......................................................................................................................GTATTGCACTTGAGACGGCCGG................................................................................................................................................................................................................2223.0066000000
........................................................................................................................ATTGCACTTGAGACGGCCGGAC..............................................................................................................................................................................................................2223.0065000100
.......................................................................................................................TATTGCACTTGAGACGGCCGC................................................................................................................................................................................................................2123.0065000010
.......................................................................................................................TATTGCACTTGAGACGGCCGGCA..............................................................................................................................................................................................................2322.5051103000
.........................................................................................................................TTGCACTTGAGACGGCCGG................................................................................................................................................................................................................1922.5055000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATTCAC..........................................................................................................................................................................................................2722.5050000005
.......................................................................................................................TATTGCACTTGAGACGGCCGGATTTT...........................................................................................................................................................................................................2622.5050000302
.......................................................................................................................TATTGCACTTGAGACGGCCGGCAA.............................................................................................................................................................................................................2422.5051103000
......................................................................................................................GTATTGCACTTGAGACGGCCGGAA..............................................................................................................................................................................................................2422.0044000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATAT............................................................................................................................................................................................................2522.0043000100
........................................................................................................................ATTGCACTTGAGACGGCCGGATT.............................................................................................................................................................................................................2322.0043000100
..........................................................................................................................TGCACTTGAGACGGCCGGA...............................................................................................................................................................................................................1922.0042100010
.......................................................................................................................TATTGCACTTGAGACGGCCGGTG..............................................................................................................................................................................................................2322.0040000130
.......................................................................................................................TATTGCACTTGAGACGGT...................................................................................................................................................................................................................1821.5030000120
.......................................................................................................................TATTGCACTTGAGACGGCCGGAACT............................................................................................................................................................................................................2521.5032100000
.......................................................................................................................TATTGCACTTGAGACGGCCC.................................................................................................................................................................................................................2021.5033000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATTC............................................................................................................................................................................................................2521.5030000003
.......................................................................................................................TATTGCACTTGAGACGGCCGGATC.............................................................................................................................................................................................................2421.5030001002
..............................................................................................................................CTTGAGACGGCCGGA...............................................................................................................................................................................................................1521.5030000003
.......................................................................................................................TATTGCACTTGAGACGGCCGGGA..............................................................................................................................................................................................................2321.5030003000
........................................................................................................................ATTGCACTTGAGACGGCCGGATA.............................................................................................................................................................................................................2321.0022000000
droYak3
AT------AACAATTACCATATTTATAT------TATTATAAATAAAGTTACAA--ATTGCGTTTGAAGCGCTTCGGTTCGTCCCAGG-AGCAATTCTGCACT----ATT-AAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAA-CGAATCATTT--AA---ACAAC-------------------------GCATT----------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................................TATTGCACTTGAGACGGCCGGA...............................................................................................................................................................................................................22140588.004058829141162379517564177410112360
.......................................................................................................................TATTGCACTTGAGACGGCCGGAA..............................................................................................................................................................................................................23116980.00169802332113043554415370013
.......................................................................................................................TATTGCACTTGAGACGGCCGG................................................................................................................................................................................................................21113682.0013682248887759860112012110020
.......................................................................................................................TATTGCACTTGAGACGGCCGGAT..............................................................................................................................................................................................................2318548.0085481361525664417746560000
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAA.............................................................................................................................................................................................................2417817.0078171193255001845616000173
.......................................................................................................................TATTGCACTTGAGACGGCCG.................................................................................................................................................................................................................2011902.001902467399518343290047
.......................................................................................................................TATTGCACTTGAGACGGCCGGAC..............................................................................................................................................................................................................2311824.001824441381621140220003
.......................................................................................................................TATTGCACTTGAGACGGCCGGT...............................................................................................................................................................................................................2211366.00136603468738617520010
........................................................................................................................ATTGCACTTGAGACGGCCGGA...............................................................................................................................................................................................................2111237.0012370103019440020007
.......................................................................................................................TATTGCACTTGAGACGGCCGGATT.............................................................................................................................................................................................................241563.00563159438925101200027
.......................................................................................................................TATTGCACTTGAGACGGCCGGC...............................................................................................................................................................................................................221401.00401111361191350000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATA.............................................................................................................................................................................................................241379.00379094265110000018
........................................................................................................................ATTGCACTTGAGACGGCCGGAA..............................................................................................................................................................................................................221364.00364024012310000000
........................................................................................................................ATTGCACTTGAGACGGCCGG................................................................................................................................................................................................................201351.0035103183100010010
.......................................................................................................................TATTGCACTTGAGACGGCC..................................................................................................................................................................................................................191321.0032101629380110020
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAC.............................................................................................................................................................................................................241282.0028201326630000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGAG..............................................................................................................................................................................................................231218.0021845814670030000
........................................................................................................................ATTGCACTTGAGACGGCCGGAAA.............................................................................................................................................................................................................231195.0019501623200010000
........................................................................................................................ATTGCACTTGAGACGGCCGGAT..............................................................................................................................................................................................................221193.0019301236720010000
.......................................................................................................................TATTGCACTTGAGACGGC...................................................................................................................................................................................................................181132.001320312511010010
.......................................................................................................................TATTGCACTTGAGACGGCCGGTA..............................................................................................................................................................................................................231124.001240358320040000
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAAT............................................................................................................................................................................................................251111.001110188530000005
.......................................................................................................................TATTGCACTTGAGACGGCCGGG...............................................................................................................................................................................................................221103.0010323827300330000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATC.............................................................................................................................................................................................................241103.00103159520000000
.......................................................................................................................TATTGCACTTGAGACGGCCGA................................................................................................................................................................................................................21193.00930127820010000
.........................................................................................................................TTGCACTTGAGACGGCCGGA...............................................................................................................................................................................................................20189.00890522800000009
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAG.............................................................................................................................................................................................................24184.00840126820000002
..........................................................................CGGTTCGTCCCAGG-AGCAATTCT..........................................................................................................................................................................................................................................................23181.0081078100020000
.......................................................................................................................TATTGCACTTGAGACGGCCGT................................................................................................................................................................................................................21177.007701539600170000
.......................................................................................................................TATTGCACTTGAGACGGCCGGCA..............................................................................................................................................................................................................23171.00710433320200000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATAT............................................................................................................................................................................................................25169.00690233800010007
.......................................................................................................................TATTGCACTTGAGACGGCCGGACA.............................................................................................................................................................................................................24168.0068184561010006
.......................................................................................................................TATTGCACTTGAGACGGCCGGTAA.............................................................................................................................................................................................................24159.00590203720000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATTT............................................................................................................................................................................................................25159.0059854020030001
.......................................................................................................................TATTGCACTTGAGACGGCCGC................................................................................................................................................................................................................21153.0053015010010000
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAAC............................................................................................................................................................................................................25151.0051024700000002
........................................................................................................................ATTGCACTTGAGACGGCCG.................................................................................................................................................................................................................19137.0037032500000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGCAA.............................................................................................................................................................................................................24133.00330218130000000
........................................................................................................................ATTGCACTTGAGACGGCCGGT...............................................................................................................................................................................................................21133.0033026700000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATG.............................................................................................................................................................................................................24131.0031661540000000
.........................................................................................................................TTGCACTTGAGACGGCCGG................................................................................................................................................................................................................19130.0030024600000000
........................................................................................................................ATTGCACTTGAGACGGCCGGAC..............................................................................................................................................................................................................22128.00281101700000000
.........................................................................................................................TTGCACTTGAGACGGCCGGAA..............................................................................................................................................................................................................21128.00280141400000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGGA..............................................................................................................................................................................................................23128.00280134110000000
.......................................................................................................................TATTGCACTTGAGACGGCG..................................................................................................................................................................................................................19126.0026002600000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATAC............................................................................................................................................................................................................25123.0023051610100000
.......................................................................................................................TATTGCACTTGAGACGGCCGGTC..............................................................................................................................................................................................................23122.0022021900010000
.......................................................................................................................TATTGCACTTGAGACGGCCGGACC.............................................................................................................................................................................................................24121.0021102000000000
......................................................................................................................GTATTGCACTTGAGACGGCCGGA...............................................................................................................................................................................................................23118.0018016200000000
.......................................................................................................................TATTGCACTTGAGACGGCCC.................................................................................................................................................................................................................20118.0018111510000000
........................................................................................................................ATTGCACTTGAGACGGCCGGATA.............................................................................................................................................................................................................23117.0017013400000000
..........................................................................................................................TGCACTTGAGACGGCCGGA...............................................................................................................................................................................................................19116.0016010600000000
.........................................................................................................................TTGCACTTGAGACGGCCGGAAA.............................................................................................................................................................................................................22116.0016012400000000
..........................................................................CGGTTCGTCCCAGG-AGCAATTC...........................................................................................................................................................................................................................................................22116.001608530000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATCT............................................................................................................................................................................................................25114.0014001310000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATTAA...........................................................................................................................................................................................................26114.001408600000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGCC..............................................................................................................................................................................................................23112.0012001100100000
.......................................................................................................................TATTGCACTTGAGACGGCT..................................................................................................................................................................................................................19112.0012001200000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATTTTA..........................................................................................................................................................................................................27112.0012000000000012
.........................................................................................................................TTGCACTTGAGACGGCCGGAT..............................................................................................................................................................................................................21112.001209200010000
.......................................................................................................................TATTGCACTTGAGACGGCCT.................................................................................................................................................................................................................20111.001112620000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGTAC.............................................................................................................................................................................................................24110.001001710010000
.......................................................................................................................TATTGCACTTGAGACGGCCGGAACT............................................................................................................................................................................................................25110.0010001000000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGAAAG............................................................................................................................................................................................................25110.001003610000000
........................................................................................................................ATTGCACTTGAGACGGCCGGATT.............................................................................................................................................................................................................23110.001008100010000
......................................................................................................................GTATTGCACTTGAGACGGCCGGAA..............................................................................................................................................................................................................2419.00909000000000
.......................................................................................................................TATTGCACTTGAGACGGCCGGATTAAA..........................................................................................................................................................................................................2719.00923300010000
........................................................................................................................ATTGCACTTGAGACGGCCGGAG..............................................................................................................................................................................................................2219.00908100000000
droSec2
CT------AACAATTTAAATTTTTAAAT------TATTATAAATAATG---GGA--ATTAAGTTTAAAGCGTTTTGGTTCGTCACAAG-GGCAATTCTGCATT----TT--TAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAA-AGAATCATCATTGA---GCAAA-------------------------G---T-----------------------------AATTAGTT-------------------------------------------TTTTT------------------------------TCCTTGCAA----------TAGGC-GGCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.......................................................................................................................TATTGCACTTGAGACGGCCGA................................................................................................................................................................................................................2116003.00600335153211963204
.......................................................................................................................TATTGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................2215112.0051123805200960147
.......................................................................................................................TATTGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................2312950.0029501767691006108
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................241626.006262532232130
..........................................................................TGGTTCGTCACAAG-GGCAATT............................................................................................................................................................................................................................................................211602.006024065112916
..........................................................................TGGTTCGTCACAAG-GGCAATTCT..........................................................................................................................................................................................................................................................231470.004702765011430
.......................................................................................................................TATTGCACTTGAGACGGCCG.................................................................................................................................................................................................................201466.004661844421919
..........................................................................TGGTTCGTCACAAG-GGCAATTC...........................................................................................................................................................................................................................................................221326.003261374812219
.......................................................................................................................TATTGCACTTGAGACGGCCGAAT..............................................................................................................................................................................................................231292.0029212582814
.......................................................................................................................TATTGCACTTGAGACGGCCGAT...............................................................................................................................................................................................................221251.0025198687411
........................................................................................................................ATTGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................211238.00238228280
........................................................................................................................ATTGCACTTGAGACGGCCGA................................................................................................................................................................................................................201195.00195182292
........................................................................................................................ATTGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................221140.00140128183
..........................................................................TGGTTCGTCACAAG-GGCAAT.............................................................................................................................................................................................................................................................201105.001052825502
.......................................................................................................................TATTGCACTTGAGACGGCCGATA..............................................................................................................................................................................................................23175.00751334226
.......................................................................................................................TATTGCACTTGAGACGGCCGAAC..............................................................................................................................................................................................................23159.005944492
..........................................................................TGGTTCGTCACAAG-GGCAATTCTGCA.......................................................................................................................................................................................................................................................26144.004422985
.......................................................................................................................TATTGCACTTGAGACGGCCGAAG..............................................................................................................................................................................................................23144.0044262160
.......................................................................................................................TATTGCACTTGAGACGGCCGT................................................................................................................................................................................................................21137.0037414163
.......................................................................................................................TATTGCACTTGAGACGGCCGG................................................................................................................................................................................................................21131.003128030
.......................................................................................................................TATTGCACTTGAGACGGCCGATAA.............................................................................................................................................................................................................24130.003044220
.......................................................................................................................TATTGCACTTGAGACGGCCGAC...............................................................................................................................................................................................................22130.003019290
........................................................................................................................ATTGCACTTGAGACGGCCGAAT..............................................................................................................................................................................................................22129.002921431
..........................................................................TGGTTCGTCACAAG-GGCAATTCA..........................................................................................................................................................................................................................................................23124.0024101112
..........................................................................TGGTTCGTCACAAG-GGCAA..............................................................................................................................................................................................................................................................19123.002331091
.......................................................................................................................TATTGCACTTGAGACGGCC..................................................................................................................................................................................................................19123.002363113
..........................................................................TGGTTCGTCACAAG-GGCAATTCTA.........................................................................................................................................................................................................................................................24122.002220110
.........................................................................................................................TTGCACTTGAGACGGCCGA................................................................................................................................................................................................................19122.002214080
...........................................................................GGTTCGTCACAAG-GGCAATTCT..........................................................................................................................................................................................................................................................22121.002121000
.......................................................................................................................TATTGCACTTGAGACGGC...................................................................................................................................................................................................................18121.002110164
........................................................................................................................ATTGCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................23120.002018200
...........................................................................GGTTCGTCACAAG-GGCAATT............................................................................................................................................................................................................................................................20120.002020000
..........................................................................TGGTTCGTCACAAG-GGCAATTT...........................................................................................................................................................................................................................................................22118.001801440
..........................................................................TGGTTCGTCACAAG-GGCAATTA...........................................................................................................................................................................................................................................................22113.00137330
.......................................................................................................................TATTGCACTTGAGACGGCCGTT...............................................................................................................................................................................................................22113.00132452
........................................................................................................................ATTGCACTTGAGACGGCCG.................................................................................................................................................................................................................19113.001312010
.......................................................................................................................TATTGCACTTGAGACGGCCGAG...............................................................................................................................................................................................................22112.00124251
..........................................................................TGGTTCGTCACAAG-GGCAATTAAA.........................................................................................................................................................................................................................................................24112.00126141
.......................................................................................................................TATTGCACTTGAGACGGCCGAATT.............................................................................................................................................................................................................24112.00122901
.........................................................................................................................TTGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................20111.00119020
.......................................................................................................................TATTGCACTTGAGACGGCCGACA..............................................................................................................................................................................................................23111.00114061
..........................................................................TGGTTCGTCACAAG-GGCAATTCTG.........................................................................................................................................................................................................................................................24110.00105230
..........................................................................TGGTTCGTCACAAG-GGCAATTCTGC........................................................................................................................................................................................................................................................2519.0095040
.........................................................................................................................TTGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................2118.0085030
......................................................................................................................GTATTGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................2318.0088000
..........................................................................TGGTTCGTCACAAG-GGCAATTCC..........................................................................................................................................................................................................................................................2318.0084130
..........................................................................TGGTTCGTCACAAG-GGCAATA............................................................................................................................................................................................................................................................2116.0063201
.......................................................................................................................TATTGCACTTGAGACGGCCGAACA.............................................................................................................................................................................................................2416.0063120
.......................................................................................................................TATTGCACTTGAGACGGCCGAATTT............................................................................................................................................................................................................2516.0061500
.......................................................................................................................TATTGCACTTGAGACGGCCGAATA.............................................................................................................................................................................................................2416.0063300
......................................................................................................................GTATTGCACTTGAGACGGCCGA................................................................................................................................................................................................................2216.0066000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAAT............................................................................................................................................................................................................2516.0061230
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAG.............................................................................................................................................................................................................2415.0053020
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAC.............................................................................................................................................................................................................2415.0054001
.......................................................................................................................TATTGCACTTGAGACGGCCGC................................................................................................................................................................................................................2114.0040130
..........................................................................TGGTTCGTCACAAG-GGCAATTCTGCAA......................................................................................................................................................................................................................................................2714.0043010
..........................................................................TGGTTCGTCACAAG-GGCA...............................................................................................................................................................................................................................................................1814.0041120
..........................................................................TGGTTCGTCACAAG-GGCAATTAA..........................................................................................................................................................................................................................................................2314.0040040
........................................................................................................................ATTGCACTTGAGACGGCCGAAC..............................................................................................................................................................................................................2214.0044000
.........................................................................................................................TTGCACTTGAGACGGCCG.................................................................................................................................................................................................................1814.0041030
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAAC............................................................................................................................................................................................................2513.0032010
.......................................................................................................................TATTGCACTTGAGACGGCCGATC..............................................................................................................................................................................................................2313.0032100
............................................................................GTTCGTCACAAG-GGCAATT............................................................................................................................................................................................................................................................1913.0033000
.........................................................................................................................TTGCACTTGAGACGGCCGAAT..............................................................................................................................................................................................................2113.0031020
...........................................................................GGTTCGTCACAAG-GGCAATTCTA.........................................................................................................................................................................................................................................................2313.0033000
..........................................................................TGGTTCGTCACAAG-GGCAATTCCA.........................................................................................................................................................................................................................................................2413.0033000
...........................................................................GGTTCGTCACAAG-GGCAATTC...........................................................................................................................................................................................................................................................2113.0033000
.......................................................................................................................TATTGCACTTGAGACGGCCGAATATA...........................................................................................................................................................................................................2613.0030300
......................................................................................................................GTATTGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................2413.0033000
........................................................................................................................ATTGCACTTGAGACGGCC..................................................................................................................................................................................................................1812.0022000
............................................................................GTTCGTCACAAG-GGCAATTCT..........................................................................................................................................................................................................................................................2112.0022000
.......................................................................................................................TATTGCACTTGAGACGGCCGATG..............................................................................................................................................................................................................2312.0020200
.......................................................................................................................TATTGCACTTGAGACGGCCGAATTA............................................................................................................................................................................................................2512.0021100
..........................................................................TGGTTCGTCACAAG-GGCAATTCAAA........................................................................................................................................................................................................................................................2512.0020020
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAAG............................................................................................................................................................................................................2512.0021010
..........................................................................TGGTTCGTCACAAG-GGCAATG............................................................................................................................................................................................................................................................2112.0022000
.........................................................................TTGGTTCGTCACAAG-GGCAATT............................................................................................................................................................................................................................................................2212.0022000
........................................................................................................................ATTGCACTTGAGACGGCCGAAG..............................................................................................................................................................................................................2212.0022000
...........................................................................................................................GCACTTGAGACGGCCGAA...............................................................................................................................................................................................................1812.0022000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAACT............................................................................................................................................................................................................2512.0022000
.......................................................................................................................TATTGCACTTGAGACGGCCGGT...............................................................................................................................................................................................................2212.0022000
..........................................................................TGGTTCGTCACAAG-GGCAAAA............................................................................................................................................................................................................................................................2112.0020200
..........................................................................TGGTTCGTCACAAG-GGCAATTCAA.........................................................................................................................................................................................................................................................2412.0022000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTT.........................................................................................................................................................................................................................................................2412.0022000
.......................................................................................................................TATTGCACTTGAGACGGCCGACAA.............................................................................................................................................................................................................2412.0020020
.........................................................................................................................TTGCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................2212.0022000
.......................................................................................................................TATTGCACTTGAGACGGCCGTTA..............................................................................................................................................................................................................2312.0020200
.......................................................................................................................TATTGCACTTGAGACGGCCGTTC..............................................................................................................................................................................................................2312.0021100
........................................................................................................................ATTGCACTTGAGACGGCCGATA..............................................................................................................................................................................................................2212.0020200
........................................................................................................................ATTGCACTTGAGACGGCCGAG...............................................................................................................................................................................................................2112.0022000
droSim2
CT------AACAATTTAAATTTTTAAAT------TATTATAAATAATG---TGA--ATTAAGTTTAAAGCGTTTTGGTTCGTCACAAG-GGCAATTCTGCATT----TT--TAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAA-AGAATCATCATTGA---GCAAA-------------------------G---T-----------------------------AATTAGTT-------------------------------------------TTTT-------------------------------TCCTTGCAA----------TAGGC-GGCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................................................................TATTGCACTTGAGACGGCCGA................................................................................................................................................................................................................211124803.0012480301166577401262208182302132942314797598145310924750225
.......................................................................................................................TATTGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................22189294.00892942342763301871251852478715971140486128539824979111
.......................................................................................................................TATTGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................23184398.008439808303625009108857630216275806241567907267000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................24136006.0036006005425600344133751575910778192715722039000
..........................................................................TGGTTCGTCACAAG-GGCAATT............................................................................................................................................................................................................................................................21111357.0011357013601912445399188918711111396474688128
.......................................................................................................................TATTGCACTTGAGACGGCCG.................................................................................................................................................................................................................2018251.008251755914937714042953338087485551901022936211
..........................................................................TGGTTCGTCACAAG-GGCAATTCT..........................................................................................................................................................................................................................................................2317910.00791000036188318231716181814294555066325001
..........................................................................TGGTTCGTCACAAG-GGCAATTC...........................................................................................................................................................................................................................................................2217132.00713200038106619111882231661960792403137203
.......................................................................................................................TATTGCACTTGAGACGGCCGAAT..............................................................................................................................................................................................................2312596.002596031315903193368356901803535125001
.......................................................................................................................TATTGCACTTGAGACGGCCGAT...............................................................................................................................................................................................................2211685.0016850543001801983614211402018335000
..........................................................................TGGTTCGTCACAAG-GGCAAT.............................................................................................................................................................................................................................................................2011633.001633010939983232201156237517531005
.......................................................................................................................TATTGCACTTGAGACGGCCGAAC..............................................................................................................................................................................................................2311221.00122102346002332593522375771321000
........................................................................................................................ATTGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................2111218.001218002291002772592362361417417000
........................................................................................................................ATTGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................2211192.0011920004700141165304307209478000
.......................................................................................................................TATTGCACTTGAGACGGCCGATA..............................................................................................................................................................................................................2311064.0010640101001171324093212410940000
.......................................................................................................................TATTGCACTTGAGACGGCC..................................................................................................................................................................................................................191882.008820163111189212447485471217000
..........................................................................TGGTTCGTCACAAG-GGCAA..............................................................................................................................................................................................................................................................191868.00868010134112141268774242294000
........................................................................................................................ATTGCACTTGAGACGGCCGA................................................................................................................................................................................................................201812.008120044721114124201193764541000
.......................................................................................................................TATTGCACTTGAGACGGC...................................................................................................................................................................................................................181710.007100340145221193427453101000
...........................................................................................................................GCACTTGAGACGGCCGA................................................................................................................................................................................................................171545.005450000001213538000000
..........................................................................TGGTTCGTCACAAG-GGCAATTT...........................................................................................................................................................................................................................................................221478.004780000000101301471001
...........................................................................................................................GCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................191451.004510000000163441000000
...........................................................................................................................GCACTTGAGACGGCCGAA...............................................................................................................................................................................................................181450.004500000001012446000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTA.........................................................................................................................................................................................................................................................241445.00445000700333616314752061000
.......................................................................................................................TATTGCACTTGAGACG.....................................................................................................................................................................................................................161413.004130000003479390000000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAG..............................................................................................................................................................................................................231411.00411006300434614210751742000
........................................................................................................................ATTGCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................231381.00381000130042371459350010000
.......................................................................................................................TATTGCACTTGAGACGGCCGT................................................................................................................................................................................................................211343.003430720001615302320173210000
..........................................................................TGGTTCGTCACAAG-GGC................................................................................................................................................................................................................................................................171325.003250000000232318000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCA..........................................................................................................................................................................................................................................................231304.00304000300251212288343134000
..........................................................................TGGTTCGTCACAAG-GGCA...............................................................................................................................................................................................................................................................181303.003030001172100512960115000
..........................................................................TGGTTCGTCACAAG-GGCAATTA...........................................................................................................................................................................................................................................................221274.0027400030042232427429158000
..........................................................................TGGTTCGTCACAAG-G..................................................................................................................................................................................................................................................................151270.00270000000302653188000000
.......................................................................................................................TATTGCACTTGAGACGGCCGG................................................................................................................................................................................................................211237.0023731411520024251117121202000
.......................................................................................................................TATTGCACTTGAGACGGCCGTT...............................................................................................................................................................................................................221191.001910210005667310160000
.............................................................................................................................ACTTGAGACGGCCGAAA..............................................................................................................................................................................................................171177.001770000000140172000000
..........................................................................TGGTTCGTCACAAG-GGCAATTAAA.........................................................................................................................................................................................................................................................241176.0017600040092856410110000
.......................................................................................................................TATTGCACTTGAGACGG....................................................................................................................................................................................................................171170.001700000001925161198001000
.......................................................................................................................TATTGCACTTGAGACGGCCGAC...............................................................................................................................................................................................................221163.00163351100016183339184016000
.............................................................................................................................ACTTGAGACGGCCGAA...............................................................................................................................................................................................................161161.001610000001200158000000
..........................................................................TGGTTCGTCACAAG-GGCAATA............................................................................................................................................................................................................................................................211149.0014900000022126904114000
.......................................................................................................................TATTGCACTTGAGACGGCCGAACA.............................................................................................................................................................................................................241149.0014900100024135428511112000
........................................................................................................................ATTGCACTTGAGACGGCCGAAT..............................................................................................................................................................................................................221148.001480004102320402228046000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAC.............................................................................................................................................................................................................241146.001460031001716553123000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCAA.........................................................................................................................................................................................................................................................241140.00140000110032514618027000
.......................................................................................................................TATTGCACTTGAGACGGCCGC................................................................................................................................................................................................................211137.0013700100028445641615000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTGCA.......................................................................................................................................................................................................................................................261114.0011400030029288143110000
.......................................................................................................................TATTGCACTTGAGACGGCCGAATA.............................................................................................................................................................................................................241103.00103000000312372122521000
.......................................................................................................................TATTGCACTTGAGACGGCCGATAA.............................................................................................................................................................................................................241102.001020000005427487515000
.............................................................................................................................ACTTGAGACGGCCGA................................................................................................................................................................................................................15194.00940000002331076000000
..........................................................................TGGTTCGTCACAAG-GG.................................................................................................................................................................................................................................................................16191.0091000000001288000000
.......................................................................................................................TATTGCACTTGAGACGGCCGACA..............................................................................................................................................................................................................23185.008500000054212871118000
..........................................................................TGGTTCGTCACAAG-GGCAATTAA..........................................................................................................................................................................................................................................................23180.008000010023332410223000
.......................................................................................................................TATTGCACTTGAGACGGCCGAG...............................................................................................................................................................................................................22175.0075005000811171021300000
..............................................................................................................................CTTGAGACGGCCGAA...............................................................................................................................................................................................................15171.0071000000202166000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCAAA........................................................................................................................................................................................................................................................25171.00710005000327332001000
.......................................................................................................................TATTGCACTTGAGACGGCCT.................................................................................................................................................................................................................20170.00700212000223340033000
...........................................................................................................................GCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................20267.501350000000000135000000
.......................................................................................................................TATTGCACTTGAGACGGCCGAATT.............................................................................................................................................................................................................24167.0067000020101410840118000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTAA........................................................................................................................................................................................................................................................25161.006100000045162610000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTG.........................................................................................................................................................................................................................................................24161.006100025091151315001000
.........................................................................................................................TTGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................20159.00590005009185220000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTGC........................................................................................................................................................................................................................................................25157.0057000020758129500000
.......................................................................................................................TATTGCACTTGAGACGGCCTG................................................................................................................................................................................................................21154.005400000014241114000000
.........................................................................................................................TTGCACTTGAGACGGCCGA................................................................................................................................................................................................................19150.005000010051271015000000
.........................................................................................................................TTGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................21146.00460002005316812000000
..........................................................................................................................TGCACTTGAGACGGCCGA................................................................................................................................................................................................................18146.0046000000134038000000
.......................................................................................................................TATTGCACTTGAGACGGCCA.................................................................................................................................................................................................................20141.00410130003211281010000
...........................................................................................................................GCACTTGAGACGGCCG.................................................................................................................................................................................................................16141.0041000000000041000000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAGA.............................................................................................................................................................................................................24141.0041000000751397000000
...........................................................................GGTTCGTCACAAG-GGCAATT............................................................................................................................................................................................................................................................20140.0040000200007410224000
........................................................................................................................ATTGCACTTGAGACGGCCGAAC..............................................................................................................................................................................................................22140.00400001001013483001000
..............................................................................................................................CTTGAGACGGCCGAAA..............................................................................................................................................................................................................16337.331120000000024106000000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAG.............................................................................................................................................................................................................24136.0036000000611439210000
........................................................................................................................ATTGCACTTGAGACGGCCG.................................................................................................................................................................................................................19135.0035021351030260111000
.......................................................................................................................TATTGCACTTGAGACGGCCGAGA..............................................................................................................................................................................................................23135.0035000000227519000000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAAC............................................................................................................................................................................................................25133.003300010045687110000
..........................................................................................................................TGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................19132.0032000010232222000000
..........................................................................TGGTTCGTCACAAG-GGCAT..............................................................................................................................................................................................................................................................19132.0032000000000000032000
........................................................................................................................ATTGCACTTGAGACGGCC..................................................................................................................................................................................................................18131.0031000020001226000000
..........................................................................................................................TGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................20131.0031000000004324000000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAAT............................................................................................................................................................................................................25130.0030002100321444000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTGCAAA----.................................................................................................................................................................................................................................................28129.00290000001412300000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTGCAA......................................................................................................................................................................................................................................................27125.0025000000109024000000
............................................................................................................................CACTTGAGACGGCCGA................................................................................................................................................................................................................16125.002500000045646000000
.......................................................................................................................TATTGCACTTGAGAC......................................................................................................................................................................................................................15223.50470000001341326000000
...........................................................................GGTTCGTCACAAG-GGCAATTCT..........................................................................................................................................................................................................................................................22123.002300050003850011000
..........................................................................TGGTTCGTCACAAG-GGCAATTCC..........................................................................................................................................................................................................................................................23123.0023000000111017201000
........................................................................................................................ATTGCACTTGAGACGGC...................................................................................................................................................................................................................17122.0022000000000121000000
..........................................................................TGGTTCGTCACAAG-GGCAAA.............................................................................................................................................................................................................................................................20122.0022000000002120215000
..........................................................................TGGTTCGTCACAAG-GGCAATAA...........................................................................................................................................................................................................................................................22119.0019000000004220110000
.........................................................................................................................TTGCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................22118.001800020032722000000
..............................................................................TCGTCACAAG-GGCAATTC...........................................................................................................................................................................................................................................................18118.0018000000000018000000
...........................................................................GGTTCGTCACAAG-GGCAATTC...........................................................................................................................................................................................................................................................21118.0018000330000020010000
.......................................................................................................................TATTGCACTTGAGACGGCGA.................................................................................................................................................................................................................20115.001500000033621000000
............................................................................................................................CACTTGAGACGGCCGAAA..............................................................................................................................................................................................................18115.001500000012309000000
.......................................................................................................................TATTGCACTTGAGACGGCCGACAA.............................................................................................................................................................................................................24115.001500000000651210000
..........................................................................................................................TGCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................21114.0014000000112010000000
dm3
CT------AACAATTAGCATTTTTAAAT------TATTAGA---AATG---TGA--ATTAAGTTTGAAGCGATTTGGTTCGTCACAAG-GGCAATTCTGCATT----TT--TTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAA-CGAATCATTTT--ATGAGCAAA-------------------------G---T-----------------------------AATTAGTT-------------------------------------------TTGTT------------------GTGTTTTTAAACTCCTTGCAA----------TAGGC-GGCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.......................................................................................................................TATTGCACTTGAGACGGCCTGA...............................................................................................................................................................................................................221823125.0082312570714301582511311603800000200109622155716000134031314014533853295533511551411339526142008306150040457264063430234264031597512920003744532030000000000000000023111323475024502143390333542721438850141913164305464553143255461545540812568714124501100000120628101410234380145120462262650064929496232861944539133714558173137232713840645127060000027130531219013002219143112442010008218203834193519809981992442411832012025442295235638997235123501541188481248342215562425013465180321492680761302916723850013011400622717181003201232012264116610622430120218174102532312021548339027187105457018789632152856710041251966682102164052525418744492201784112553302951562231611473124260624491231311912428248712039685479176375136175693605366275687151647837
.......................................................................................................................TATTGCACTTGAGACGGCCTG................................................................................................................................................................................................................211229467.00229467000134395715501100000000178407692605022000000022708634898615036521099336304402446691196369168341174831236000243080000000000000000000001568159215254917023133116818149371211323662051121058441081891943680000000100102210041528111123162841872620223614461014124918131467815100102910412073623000000000602402001500000000000048501063128786952024735058513510000046510626910952735420001114140387232341001888114013811216862832166650011000031031901990121225006517900131400020105430257594103321807138911083132091022235861179310316293000127472518697142843057607167581678315211912152170315108137851395255012794611518241180647324224636387202926333309642
..........................................................................TGGTTCGTCACAAG-GGCAATTCT..........................................................................................................................................................................................................................................................23172068.007206800010519431671130000000055404533000008241058410716371102212492431103511994115228261495186710001200000000000000000011000424173355239351000371011131603332713340046347813389313919310800000000001000124541374621119117506446541723207556479478206503515176682400000000000012020004920000401000112111036828324615194941375454101062973431620125102000208011041342789094771434162011487091044965000300008844039000015102308105500000205007470002131510365226422718334283499001170000111767129172465229010471696586240165666300404666127500114845662141573190040610051311689116631911104
.......................................................................................................................TATTGCACTTGAGACGGCCTGAA..............................................................................................................................................................................................................23170905.0070905000025285131206000000007415562380200000000791771142967824316202771844430219265190172188303600000000000000000000000000000637187522465696000055028919632204118300950793403926411528701000000001000020026801823580826748035613881472692391611032515017230612100000000000230600160100010000005525301317121902169402387501201306300758201300023219864743089962263226603331232929434338110020571400725604200002400190300030000000200332100125833211282382912524183132346460041000000200627770174388146981631861521002554120015110216000744200208152762314282203109
.......................................................................................................................TATTGCACTTGAGACGGCCTGAAA.............................................................................................................................................................................................................24159402.00594020000032430640100000000561631001000000000011124584388902141440273131293617229178101711715100000000000000000000000000007122443522226590001211161216690020120000365304715192153178000000000001100000303577250681058120946825427317954298196291391011687000000000000440300130110000000000268499921543317927619332010583100252330800013233497143273227241661189132021366353570041020033390200000020015010004000000000021000140035529362949114039214441588002000000101822000403336165361416101400328111941990000400100000012289918174559100100
.......................................................................................................................TATTGCACTTGAGACGGCCT.................................................................................................................................................................................................................20130804.00308040000107173305200000001973212194000000040027031345412216485331431455010182772839614696360004210000000000000000000000128259295165002033059226300078260218361627704111700000000000111003200002121555350244526915411626283100278187179770000000000000000005000000100000235618854758500216214683000004271314764500011327416310274525467124441252217300040000283112400000200016016004100000001640951000079418859182732655214746315210042010000824271520452554513628144344414802121148558011058001501220130459033688126107010
..........................................................................TGGTTCGTCACAAG-GGCAATTC...........................................................................................................................................................................................................................................................22128166.0028166000002618310300000000333916343000020100378366135521990664213751480871051249024000516000000000000000000100020528403517301011007503120125282510223851348301007000000000000100106711778367342471912102771321972411698415871431991040000000000010000001200000600000223414555416537102182253613010000117424399113718000935396173454136742002181781221341650110000016190900000100904001200000002106710001291048274164717013283052153003800200055428983249233055319122964274110154017431811040107205441330018426196330152204500114
.......................................................................................................................TATTGCACTTGAGACGGCCTGT...............................................................................................................................................................................................................22125331.002533100000015000000000000850895200000000001149664851422060766020541576173581161046500000000000000000000000000005276744531002061721990114210002103101540270100001000001000000000205737929220296811011259976237765994400000000100100100000000010000001584105865806052472273326400000679421121000004514179400498612415466125591291003000033150160010111060270020000001010003862004451048671212752816694111562003800000046191632151703093868933616661350034695138700131240026017212163411002362071451201110
.......................................................................................................................TATTGCACTTGAGACGGCCTGAT..............................................................................................................................................................................................................2319478.00947800000252310400000000112410230000000000327211317418273527735113226213933120006477240000000000000000010000471351304500100003601111007402001380516190017000000000000000000041250158810958192646384312124343292600000000000100000040000000000000247471241100070510710000002422002000000492031957152921882382021551522314001600069060000010030100200000000000160000129371286774220711267101600170000001195121267133972261213800421911681102300502100341015563325300112
...........................................................................GGTTCGTCACAAG-GGCAATTCT..........................................................................................................................................................................................................................................................2218085.0080850000000000000000000000000000000000000100000000000010000000000000000000000000000002006100000000000000000000000001000000000000000000000817040000000311000000000000000000000000000000000000000001102001000000000100000000010130461426731416498391591135800000000000000000000000000000000000000000032221411082200000000020000000030000004101000100000000001001000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGC...............................................................................................................................................................................................................2215031.0050310000000200000000000015141340000000000312501623181511721512131615852721920910450000000000000000000000000000905251300000003140000010000020002001101000000000210000163380436464649121920980273254430000000000000010000000000000000010642000013700000912000000000694116710137751700000000610310201100102000000000002008100036256362084839273515005000000115210002843244811923120084162510070080000100121078000000
..........................................................................TGGTTCGTCACAAG-GGCAATT............................................................................................................................................................................................................................................................2114034.00403400000113201300000000810482200010000016713255216831531291576200010000000000000000000000004173947001020066291600120200135213117105300000000000020108535114045346309820242625115102826220000000000001000000101000000000045271902735003531112200010112916053000006163481641942551113435274300010000711020000030000300010000000100900001279251192106141200060000006533101543631761110168001271672060101410402100201114372622100000
........................................................................................................................ATTGCACTTGAGACGGCCTGA...............................................................................................................................................................................................................2113611.00361100000000000000000000211700000000000415370232152365461000131160000000000000000000000954121200100004040000200000200111003000000000000000000411160112914114172115167300000000000000000000000000000000011310004221010004400000000020221182764619352433380000000000010000010010000100000000000160000886659558958444635810050000002210100126417730200004235500001700352000000281031000015
..........................................................................TGGTTCGTCACAAG-GGCAATTCTA.........................................................................................................................................................................................................................................................2413494.00349400000116100000000000311200000000000324948011432111159851100000000000000000000000000000502025570001000011181000180000108052501120000000000000000001500502564664391228432170101426600000000000000000000000000000000923182310264327000003677223100000141360221240293330436200000000020100000000000000000000000000000019150515121251510800000000084110051254973113012001703085390001002000000021602540000000
.......................................................................................................................TATTGCACTTGAGACGGCC..................................................................................................................................................................................................................1912382.0023820000000000000000000072747300000000001581165277611853360131181110700000000000000000000000000002130200000000105000000000000111000000000000000001081200002215433610750181719226641430000000000000000000000000000000065277330004903122000004730314080001452731681112010110000000470200000200305001000000003001700003456431042677451230031000004465001031373059326117008139460003001600003081021413100003
.......................................................................................................................TATTGCACTTGAGACGGC...................................................................................................................................................................................................................1812029.0020290000000000000000000013432120000000000012910101635128169411472722195000241000000000000000000000010303000000000220000110000100110010000000000000000480000039331728112515161492974030000000000000000000000000000000023346342000502531000007980200000059773364000000000000000096020000000000200000000000210140110305920492162431160030000005672102217313550154300745443100600700001059392414201000
.......................................................................................................................TATTGCACTTGAGACGGCCTGG...............................................................................................................................................................................................................2211691.001691000000112100000000000111000000000002151121515930171023029147160000000000000000000000000000403161000000200140000001001150731200700000000000000000002105001186643444018550000000000000000000000000000000081120000201100000330000000002100101001041270000000032016000000002000000000000000041000396541813517550223002000000490020014401161001100402823000400920000002822000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGAC..............................................................................................................................................................................................................2311449.001449000000001000000000001512000000000013103410191262704209711400000000000000000000000000001207680000000102100000000012201100301000000000000000022001012021173835213545000000000000000000000000000000001176300001400000063000000000102242301328423126213500001040002020000010000000000000000000300002277411193712538129007000000322000018194029200200441429000000500000013444000000
..........................................................................TGGTTCGTCACAAG-GGCAAT.............................................................................................................................................................................................................................................................2011405.00140500000002000300000000012460000000000491002200220220002511000000000000000000000000000060101280000300130215002104001000010220120000000000000100410000000163121523636100550000000000700000001000000000000050386360025042900000340000400009231976395140566001000002100000000001010000000000000000000013119016519001000000112100100498311900162522000300600003174531000000
...........................................................................GGTTCGTCACAAG-GGCAATTC...........................................................................................................................................................................................................................................................2111273.0012730000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000001100000301010000010000002000000000000000000000000000000000000000000000000000000000002000154983945230215205233000000000000000000000000000000000000000000371317150000000000000000013000000240000000100000000100000000
.......................................................................................................................TATTGCACTTGAGACGGCCTT................................................................................................................................................................................................................2111123.00112300000000000000000000361037010000000001541422394010122241208000000000000000000000000000081100100000003014000000000000022007000000000000010000000000334116281116236232220000000000000000000000000000000015233100011012100000480010000002331313524340120001000020027000010000010000000000000031000119129113913001000000470000810532081622471000164300010000000002122515000000
........................................................................................................................ATTGCACTTGAGACGGCCTGAA..............................................................................................................................................................................................................221979.009790000000200000000000001000000000000000002052102021000000000000000000000000000000005003100000000011000000000000102001000000000000000000000000033540032002000000000000000000000000000000000001230000022000000000000000003612241032242519282000010000000000001000000000000000000007000013120261511211211149006000000701000516320001000121490005001100000000322000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCA..........................................................................................................................................................................................................................................................231929.009290000003410020000000034120000000000020400022002134332100000000000000000000000000002817162226000000020611000000001401372028000000000000000000140000114161325821042130930000000000000000000000000000000056377400152000009110020200007431212225510000000003000000000000000000000000000000000414732617021000000000386100149136900000044571150001000100000141058000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGAG..............................................................................................................................................................................................................231914.009140000000000000000000000000000000000365644043313131048810000000000000000000000000000025420000000101000000000001012100400000000000000000001001018531645100302251000000000000000000000000000000004587000307000000970000010004713107112010911190000000030010000000010100000000000000100008241038102913490020000003931201112325431120006144600007001400000005211514000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGATA.............................................................................................................................................................................................................241842.008420000000210000000000021000000000000153626151205071010620000000000000000000000000000502215000001020400000000007300110010000000000000000000000001202915145513020110000000000001000001000000000000022410400020200000048000000000432014917111012132000001100100000000000000000000000000000000010341536185915450000000002000000519633100000672337000100100000006833000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGATC.............................................................................................................................................................................................................241755.007550000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000100000000000000000000000000000004000001000000000000000000000000000000000000001000000000000000000000000000100101121020000615107000000000000000000000000000000000000010004040000000002000001010000000101000000000000000000000000
.......................................................................................................................TATTGCACTTGAGACGGCCTA................................................................................................................................................................................................................211721.007210000002400010000000001480000000000213646082003031460100000000000000000000000000001360210000000000110000010000101110010000000000000000000000001261625355116312351000000000000000000000000000000006105100020300000004000000000202526462339000001001101000000002010000000000010000000175717411151314000000000200000312724181520005313210000001200000061313000000
.........................................................................................................................TTGCACTTGAGACGGCCTGA...............................................................................................................................................................................................................201652.006520000000000000000000013000000000000020003020000012002000010000000000000000000000001509101000000001071000000000100401103000000000000000000000040011000212001140000000000000000000000000000000000401000001800000220000000004102135302312614200000000000000000000010000000000000000000001519942724147400100000020000018150000001113000100310000000011000000
...........................................................................................................................GCACTTGAGACGGCCTGA...............................................................................................................................................................................................................181651.006510000000000000000000010140000000000000000220201010221040000101000000000000000000000000000000000000000000000000000000000010000000000000000000201564005311021000000000000000000000000000000000038000000000000005200000000086216010100000000000000010000000000000000000000000000002516916646571910300000000090000098020000002336000000100000000100000002
.......................................................................................................................TATTGCACTTGAGACGGCCTGAAC.............................................................................................................................................................................................................241651.00651000000000000000000001020000000000003020312560040015344000000000000000000000000000001123300000001010000000000010002001000000000000000000021000051466014120202200000000000000000000000000000002251000000000000046000000000400017129122628202900001042900110000000000100000000000000000000010285175184130000000001610000132171000000018413000000000000002311000000
..........................................................................TGGTTCGTCACAAG-GGCAA..............................................................................................................................................................................................................................................................191613.00613000000000000000000000101800000000004000000211100000211000100000000000000000000000040013000010000090002010000000401010000000000000010020010012230050110000000000000000002000000010000000000035114812003006800000000201420000068665051100230000000001000000010010000000000000100300000506291400000000040100100154298009580001001920004091120000100
.......................................................................................................................TATTGCACTTGAGACGGCCTGTA..............................................................................................................................................................................................................231578.0057800000000000000000000010200000000000221300011042885133000000000000000000000000000043187800000000032000001000100102001200000000000000100001001017112412002001730000000000000000000000000000000038232000015026000000530000000002122104111318000000000002000000001000000000000000000000830422741530000000000100300044316001100444110000001000000101014000000
........................................................................................................................ATTGCACTTGAGACGGCCTGAAA.............................................................................................................................................................................................................231551.0055100000001000000000000000000000000000100000000010021101000000000000000000000000000010024000000000000000000000001000000000000000000000000100000437021011000000000000000000000000000000000000011000000203000003100000000012131022541317819000000000000000000000000000000000000020000139015737875470010000002000000113101000008126000300000000000111000000
........................................................................................................................ATTGCACTTGAGACGGCCTG................................................................................................................................................................................................................201549.00549000000000000000000001013000000000072000001011002013000000100000000000000000000000600230000100101000000000001000000000000000000000000001005041030030620210030000000000000000000000000000000020330000002000000100110000015321603121430000000000000000000000000000000000000000002188363851443000000000800001115430030000101313010100600000002945000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGATT.............................................................................................................................................................................................................241547.00547000000000000000000000000000000000001022102020000001100008714579000000000000000000000000042000000010010100200000000021000000000000000000000000002057002001202000000000000000000000000000000000032011000081190000001000000000011011368937020000000000000000000000000000000000000000006534332160000000002000001121100000703000100100001020100000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGAAG.............................................................................................................................................................................................................241460.004600000001100000000000010000000000000031202111202001020000000000000000000000000000005013240000000002000000000001000200000000000000000000002100003109012112001310000000000000000000000000000000021300001010000001801010000000001310131216176230000000002000000000000000000000000000000002193117215110000000002000000614620000000292519000000000000006684000000
.......................................................................................................................TATTGCACTTGAGACGGCCTC................................................................................................................................................................................................................211448.004480000000000000000000000000000000000020100093100001160000000000000000000000000000000100000000001000000000000000000000000000000000000000000010113743539220634100000000010000000000000000000000000000000000000052000000000001401041040000000000000000000000010000000000000000000929101341881400100000038000024629010193200434000000100000004513000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGTAA.............................................................................................................................................................................................................241442.00442000001000000000000000120000000000010012012110101321130000000000000000000000000000160565000000000210000000000100010030000000000000000000100001161401205022000000000000000000000000000000000000282101000303000000950000000000000328951951400000000000000000000000000000000000000000042171411420100000000004100002021100300043412000000000000003418000000
...........................................................................GGTTCGTCACAAG-GGCAATTCTA.........................................................................................................................................................................................................................................................231425.0042500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000006116107626183120000000000000000000000000000000000000000000000000000000000000000000001000000110000000000000000000000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTT.........................................................................................................................................................................................................................................................241407.00407000000010000000000000000000000000012110002030203300000000000000000000000000000000115202000010010000000000000000010000000000000000000000200000530010110004200000000000000000000000000000000011014400031150000001000000000000601285971126000000002000000001001000000000000010000000211016012216000000000900002015331131001726330004001110000025633000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGCA..............................................................................................................................................................................................................231405.004050000000100000000000021000000000000025111012121011039191132000000000000000000000000000011132000000000000000000000001010010000000000000000000200000264301400002330000000000001000000000000000000141310001010000001100000000000001102230400000000110100000000100000000000000000000033152253553100000000014000001813213000000101000000000000000000000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGACA.............................................................................................................................................................................................................241402.0040200000002000000000000023000000000000102140121202207261120000000000000000000000000000005175000000001000000000000202200010000000000000000000000005188221602001320000000000000000000000000000000010000000100000001100000000000003344335700000000200000000000000000000000000000000054831944531300000000018000001111280000001431000000000000001701000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTAA........................................................................................................................................................................................................................................................251394.003940000000300000000000000000000000000100001200100000100000000000000000000000000000000331281140000000001000000000018010400100000000000000000003100000661162230100000000000000000000000000000000000003204000010000000760000000006000305344570000000000000000000000000000000000000000001702010120000000001500002351019000000163449000000000000011022000000
...........................................................................GGTTCGTCACAAG-GGCAATT............................................................................................................................................................................................................................................................201392.0039200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001003772161650604491000000000000000000000000000000000000000000000101010000000000000000000000000000000000100000000000000000
........................................................................................................................ATTGCACTTGAGACGGCCTGAT..............................................................................................................................................................................................................221372.003720000000000000000000001020000000000000000101010010000000040000000000000000000000001004000000001001000100000000011000000000000000000000000000011000010001000000000000000000000000000000000001310000202000000010000000002412311763420000000001000000000000000000000000000300005331773649562002000000100000311260010001503000100101000000000000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCAA.........................................................................................................................................................................................................................................................241359.003590000001000000000000010000000000000111010021002000100000000000000000000000000000001338017000000000200000000000100110020000000000000000000300000490342410030000000000000000000000000000000000013150001007000002150000000000000141329450000000000000000000000000000000000000000002721001214000000000151000113723000000211955000000000000003807000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCC..........................................................................................................................................................................................................................................................231349.003490000000001020000000010000000000000000000001211022112100000000000000000000000000000110000000000000000000000000000000000000000000000000000100040021123301601000000000000000000000000000000000062400002100000041000000001631520103133000000000001000000001000000000000000000000115330115538000000000400100561621000000122722000400200000005731000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGCAA.............................................................................................................................................................................................................241298.00298000000000000000000001000000000000000023108900000257401000000000000000000000000000000002000000000000000000000000000010000000000000000000000000108540040100122000000000000100000000000000000001000000000100000030000000000000001201010000000011000000000000000000000000000000006322149341150000000001300000112288000000322000000000000000200000000
..........................................................................................................................TGCACTTGAGACGGCCTGA...............................................................................................................................................................................................................191296.002960000000000000000000012020000000000002100021000003100000000000000000000000000000000012320000000000000000000010000000000000000000000000000000000110112000006000000000000000000000000000000000000000000000000010000000000420111000010000000000000000000000000000000000000000000141056271226460000000000000003400000000321000000000000000000000000
..........................................................................TGGTTCGTCACAAG-GGCA...............................................................................................................................................................................................................................................................181282.002820000000000000000000010060000000000002000001000000101100000000000000000000000000001000100001000001000000000000000000000000000000000034490000050100010310000000000000000000000000000000000000081112000707001000010011000001271818000001000000000000010000000000000000000000110100000113065800000000030100402141100007510001000000001121020000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGAAAT............................................................................................................................................................................................................251251.0025100000001000000000000000000000000001103100100000010000000000000000000000000000000000643000000000110000000000001030000000000000000000000000000101200011010000000000000000000000000000000000000410190000110170000005300000000000002321311470000820000000000000000000000000000000000000723112140000000008000010211200000911000000000000001110000000
.......................................................................................................................TATTGCACTTGAGACGGCCTTT...............................................................................................................................................................................................................221160.0016000000000000000000000014170000000000001000010011002000000000000000000000000000000003230100000000024000000000000010001000000000000000000000000024111000210000000000000000001000000000000000011001410005060000000100000000000002100114020000000000040000000000200000000000000000000110030400000000030000020402100001310000000100001010000000000
..........................................................................TGGTTCGTCACAAG-GGCAATTA...........................................................................................................................................................................................................................................................221156.00156000000010002000000001101200000000002000120040010062300000000000000000000000000000010303000010020011000000000300100010000000000000000000000000130001011000010000000000001000000000000100000090170100100200000000000000000100100000002000000000000000000000000000000000000000000010307240000000001000001124300100156000000000002011110000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGGA..............................................................................................................................................................................................................231150.00150000001021000000000000000000000000000100010100020260001000000000000000000000000000031250000000000100000000000103130030000000000000000000000100110010210000000000000000000000000000000000000000000000000000002000000000000100210111100000000000100000000000000000000000000000021117311780000000006100002232100000302000000000000000100000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTGC........................................................................................................................................................................................................................................................251149.001490000000000000000000000100000000000002000000000100000000000000000000000000000000000000100000000000000000000000000000000000000000000000101000200001000000040000000000000000000000000000000000001306011000000000000000000101000000000000000001000000000000000000000000000000000001020000000000020000001190100008654000000200000000300300000
..........................................................................TGGTTCGTCACAAG-GGCAATTT...........................................................................................................................................................................................................................................................221146.0014600000010000200000000000700000000000100000020000110000000000000000000000000000000000101000000000130000010000000000020000000000000000000000000110701101000000000000000000000000000000000000090250000502400000001000000000210500020204000000000001000000000000000000000000010000110302000010000000000000002302200142000000100000020010000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGAAAC............................................................................................................................................................................................................251141.0014100000000000000000000001000000000002002000401000131010000000000000000000000000000002020000000000100000000000010020000000000000000000000000000350010200000000000000000000000000000000000000000000000000000003100000000000002170410190000112000000000000000000000000000000000000192411010000000006000005194000000621000000000000000200000000
.........................................................................................................................TTGCACTTGAGACGGCCTG................................................................................................................................................................................................................191130.00130000000000000000000000000000000000000002000000000000000000000000000000000000000000101050000000000000000000000001000000000000000000000000002001000110000000000000000000000000000000000000000000000000200000000000000000111101231311000000000000000000000000000000000000000000638110062130000000002000001304000000271000000000000001000000000
.......................................................................................................................TATTGCACTTGAGACGGCCA.................................................................................................................................................................................................................201127.00127000010110000000000000030000000000040111003010000000010000000000000000000000000000000020001010000000000000000000110000000000000000000000000014200112100100000000000000000000000000000000000102000010200000000001000000001001000002000000000000000000000000000000000000000000133135170000000000020000031340000001243000000000000000401000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGGAA.............................................................................................................................................................................................................241124.00124000000011000000000001010000000000000110000400000150101000000000000000000000000000001021000000000000000000001100110020000000000000000000000000231000100000000000000000000000000000000000000000010001000000001200000100000001001110000000000200300000000000000000000000000000021445215290000000004000001200000000011000000000000001101000000
.............................................................................TTCGTCACAAG-GGCAATTCT..........................................................................................................................................................................................................................................................201116.00116000000000000000000000100000000000000020000001000100100000000000000000000000000000200100000000000000000000000000000000000000000000000000000012030010000000000000000000000000000000000000000001000000020000001100000000110000000000000000000100000000000000000000000000000000156323102200000000000000000012000000311000000200000000201000000
.......................................................................................................................TATTGCACTTGAGACGGCCTGAGA.............................................................................................................................................................................................................241100.001000000000200000000000000000000000000010020010001027000000000000000000000000000000000010100000000000000000000000000001000000000000000000000000050000000000000000000000000000000000000000000001000000000000000000000000000110034013120000000000000000000000000000000000000000002548211020010000001000000512000000235000000000000000302000000
.........................................................................................................................TTGCACTTGAGACGGCCTGAAA.............................................................................................................................................................................................................22190.00900000000000000000000000000000000000000100000000000000000000000000000000000000000004000400000001020000000000000001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000030000000000000313256160000000000000000000000000000000000000000006281601020000000000000000001000000000000000000000000001000000
..........................................................................TGGTTCGTCACAAG-GGCAATTCTG.........................................................................................................................................................................................................................................................24183.00830000000000000000000000000000000000300100000000001000000011100000000000000000000000000000000000000000000000000011000000000000000000000000000002400011000010000000000000000000000000000000000000000000010010510000000001100000001300000000000000000000000000000000000000000000200020100000000030000011380000008511000000300000001100000000
.......................................................................................................................TATTGCACTTGAGACGGCCTTC...............................................................................................................................................................................................................22182.008200000010000000000000110000000000000010000103000001360100000000000000000000000000000000000000000000000000000000000000000000000000010000000000010020101001100000000000000000000000000000000000100000000000000000000000000001000000000000100000010000000000000000000000000000000221000600000000020000072163000000000000000000000001000000000
droEug1
AG------ACGGCTT---------AAGTGAAA-------------TTT---AAA--ATAAAATTTCTAGTATTTCGGTTCGCCTTTTG-TGCAATTTTAGAGT----CA----ATAGAAAATTGCACTTCAGACGGCCGGATGACTTGAAATACAAAACATCTT--A---AAA---TCTAGAAAA---------------C---T-----------A------------------A----------------------------------------GTGTTAATTTTTTGTTA-ATAGTTGTAGTTTTCGGCTTATAAAGTTCCAGCAGAATAAATAAATAGTTGGGASizeHit CountTotal NormTotal
No Reads
droBia1
GC------GGAGGTGAT-A--------------------------------TAGGC---ATATTTTTGGCGTTTCGGTCCGTCCCAGG-AGCAATCCTGTATT----TC---CGACTAGAATTGCACTTGAGACGGCCGGAGTGCTTGAAAA-CAAGGAA---------------------A------------------G---TGCATAGAAACTAACTTAAAACTAGCAGTCGACCAGCTTTATTTTGCAGGCC---------------------------------------------------------------------GAGG----------TGGGT-GGCSizeHit CountTotal NormTotal
No Reads
droTak1
CAGT----GACAGT------GTAAAAATTGTGTG------------TG---TAAAC---ATATTTCTGGTGTTCCGGTCCGTCTCAGG-CGCAATTCTGAATT----TT---CACCTAGTATTGCACTTGAGACGGCCGGAATACTTTAAATACGAAACATAA--AA---ATGAAA-------------------------------------------ATAATAGTGA----AACTTTGCTGTAATTTACATGTCGCGGGCGGTGACAATGCGAGTTAT--G----------------------------------------------------------TTT-ATTSizeHit CountTotal NormTotal
No Reads
droEle1
CA------GTGAA----AACATTTAAATTTTATC------------TG---TGTAC---TAATTTCTGGTGTTTCGGTACGTCTATGG-GGCAATTCTGCGTT----TT--CTGGTTAGCATTGCACTTGAGACGGCCGCAACACTTTGGAATAAAAACATTT--AA---GACAGT-------------------------------------------TTAAGAAAATATTTAATTCGGCATTAATTTATA------------------------------------------------------------------------TGTCG----------CTGGC-GGTSizeHit CountTotal NormTotal
No Reads
droRho1
CA------GTGC----AAATATTTAAATATAATC------------TG---CGAAC---AAATTTCTGGTGTTTCGGCTCGTCTCAAA-AGCAATTCTTCGTT----TTTCTTGGCTAGCATTGCACTTGAGACGGCCGCAATACTTTGGATTTAAAACATTT--AA---GCAAGT-------------------------------------------TTATTGAAAAAGTTATTTTTGCATTAATTTATATGTCGCTGGCGGTGACAATACAAGTTGTTGGTTTTTTTTCGTATTGCACTG-GCCCCGGCTTATAAAATCCTGGCAT----------TAAAC-GGCSizeHit CountTotal NormTotal
No Reads
droFic1
CT------AAAGTTTGC-AAGTTTTAATTAAATC------------GG--GAAAAC---CAATTTCGAGTGTTTCGGT-CGTCTTGGGTGGCAATACTAAATTAACTTT--ATGGCTAGCATTGCACTTGAGACGGCCGAAATGCTTTAAATTTATAACATCT--AA---GCAAGACCCAAA----------------------------------------------------------------AT------------------------------------------------------------------------TCTGAGCCG----------TGGAC-AGTSizeHit CountTotal NormTotal
No Reads
droKik1
TTCTTGAAAGAAGATAAACA-------------------------------AAA--GCTCCGGCCGTAAAGGTCTGTGCTGTTTGAGG-TGCAAATCTGTGGT----TA--ATAGCCAGAATTGCACTTGAAACGGCCAGATCAAGGCGGCC-CAAAACATCGC--A---ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAT-TTASizeHit CountTotal NormTotal
No Reads
droAna3
AT------AAAAAATAAATAATAGTGTT------TG---TGCTTTTTA---AAA--AAAACATCTACAATTTTCCGGTGCGTCTCTAG-TGCAACTCTTGGTT----TTT-TATACAAGTATTGCACTTGAGACGGCCGAAATATAGTGGAT-CTAAGCGGCTA--T---AAC---CGAAAAGTTTTCAGGAGCTAAAAAG---TGTTTAG----------------------AACTTCGATTTTATTTGTAGGTCGCGGAAGGTTGCAATGCGTATTTT--G-----AATCGTATTGCACTT-TCCCCGGCCCATAGA----------------------TAT-TATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................................TATTGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................231108255.0010825514561054241248131068
.......................................................................................................................TATTGCACTTGAGACGGCCGA................................................................................................................................................................................................................211103377.0010337739189642025834838820
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCAT................................22134173.0034173245630922783219
.......................................................................................................................TATTGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................22131472.0031472147328985720262626
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................24125826.0025826557245087346210
.......................................................................................................................TATTGCACTTGAGACGGCCG.................................................................................................................................................................................................................20110555.00105558509044492151459
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCA.................................21110436.001043610838865473618
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCC..................................2018113.0081133857553172003
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCAC................................2216649.0066491166334010
..........................................................................CGGTGCGTCTCTAG-TGCAACT............................................................................................................................................................................................................................................................2113186.00318612119251130172
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAATGC...........................................................................2312768.0027682401905485611220
.......................................................................................................................TATTGCACTTGAGACGGCC..................................................................................................................................................................................................................1912545.00254523249027140
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCATA...............................2312401.002401301201681102
.......................................................................................................................TATTGCACTTGAGACGGCCGAAT..............................................................................................................................................................................................................2312291.002291412148555420
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAATG............................................................................2212067.00206718314214225315
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCC...................................1911665.001665169142266701
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCATT...............................2311574.001574147137845103
.......................................................................................................................TATTGCACTTGAGACGGCCGAT...............................................................................................................................................................................................................2211407.001407351307303302
...........................................................................................................................................................................................................................................................AGGTCGCGGAAGGTTGCAATGC...........................................................................2211374.001374973623932041587
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCAA................................2211369.001369297104526001
........................................................................................................................ATTGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................2211249.0012497311714010
........................................................................................................................ATTGCACTTGAGACGGCCGA................................................................................................................................................................................................................2011115.0011152668369130
.......................................................................................................................TATTGCACTTGAGACGGCCGAAG..............................................................................................................................................................................................................2311110.0011109108316110
.......................................................................................................................TATTGCACTTGAGACGGCCGAAC..............................................................................................................................................................................................................231973.009731294316020
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAAT.............................................................................211826.00826245082592294
......................................................................................................................................................................................................................................................................................................ATTGCACTT-TCCCCGGCCCAT................................211633.006331534782000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAT.............................................................................................................................................................................................................241616.00616659114140
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCA..................................201608.0060813343243000
.......................................................................................................................TATTGCACTTGAGACGGCCGAC...............................................................................................................................................................................................................221526.00526351211000
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCATAA..............................241499.004996142810000
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAATGCAA.........................................................................251468.0046837223208000
........................................................................................................................ATTGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................211458.004581033502030
..........................................................................CGGTGCGTCTCTAG-TGCAACC............................................................................................................................................................................................................................................................211440.0044014372000
.......................................................................................................................TATTGCACTTGAGACGGCCGG................................................................................................................................................................................................................211375.0037517117131110
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAATGCA..........................................................................241358.0035829219109010
...........................................................................................................................................................................................................................................................AGGTCGCGGAAGGTTGCAATGCG..........................................................................231355.00355156423081109
.......................................................................................................................TATTGCACTTGAGACGGC...................................................................................................................................................................................................................181341.0034193283010
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAC.............................................................................................................................................................................................................241341.00341332412011
.......................................................................................................................TATTGCACTTGAGACGGCCGT................................................................................................................................................................................................................211335.0033517269252193
........................................................................................................................ATTGCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................231314.00314342791000
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAA..............................................................................201251.0025124125624333
.........................................................................................................................TTGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................211215.0021552100000
.......................................................................................................................TATTGCACTTGAGACGGCCGAG...............................................................................................................................................................................................................221203.00203131759141
.........................................................................................................................TTGCACTTGAGACGGCCGA................................................................................................................................................................................................................191178.00178151620010
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCATC...............................231174.0017431710000
.......................................................................................................................TATTGCACTTGAGACGGCCGATT..............................................................................................................................................................................................................231170.00170514521161
...........................................................................................................................................................................................................................................................AGGTCGCGGAAGGTTGCAATG............................................................................211169.001694350155524
......................................................................................................................................................................................................................................................................................................ATTGCACTT-TCCCCGGCCCA.................................201168.00168501171000
..........................................................................CGGTGCGTCTCTAG-TGCAACTCT..........................................................................................................................................................................................................................................................231162.00162123304257
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAG.............................................................................................................................................................................................................241156.0015631485000
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCT..................................201137.00137151157000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAAT............................................................................................................................................................................................................251130.0013011235010
..........................................................................CGGTGCGTCTCTAG-TGCAACTC...........................................................................................................................................................................................................................................................221129.00129862015350
..........................................................................CGGTGCGTCTCTAG-TGCAAC.............................................................................................................................................................................................................................................................201127.0012709631000
.......................................................................................................................TATTGCACTTGAGACGGCCGC................................................................................................................................................................................................................211112.0011206546100
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAATGA...........................................................................231105.0010548316110
.......................................................................................................................................................................................................................................................................................................TTGCACTT-TCCCCGGCCCAT................................201103.0010311911000
......................................................................................................................................................................................................................................................................................................ATTGCACTT-TCCCCGGCCCAC................................211102.0010211010000
.......................................................................................................................TATTGCACTTGAGACGGCCA.................................................................................................................................................................................................................20199.009911853000
.......................................................................................................................TATTGCACTTGAGACGGCCC.................................................................................................................................................................................................................20197.00970925000
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAATA............................................................................22196.009675434010
........................................................................................................................ATTGCACTTGAGACGGCCG.................................................................................................................................................................................................................19191.009137530010
......................................................................................................................................................................................................................................................................................................ATTGCACTT-TCCCCGGCCC..................................19189.008921671000
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCATTT..............................24188.00887792000
.......................................................................................................................TATTGCACTTGAGACGGCCGAACA.............................................................................................................................................................................................................24174.00744637000
.........................................................................................................................TTGCACTTGAGACGGCCGAA...............................................................................................................................................................................................................20173.00733690010
......................................................................................................................................................................................................................................................................................................ATTGCACTT-TCCCCGGCCCATA...............................22169.006929373000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAAC............................................................................................................................................................................................................25169.00692652000
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCT.................................21168.00687583000
.........................................................................................................................TTGCACTTGAGACGGCCGAAAA.............................................................................................................................................................................................................22166.00664620000
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCATG...............................23162.00625561000
.......................................................................................................................TATTGCACTTGAGACGGCCGAATA.............................................................................................................................................................................................................24162.00621574000
..........................................................................................................................TGCACTTGAGACGGCCGAAA..............................................................................................................................................................................................................20160.00601590000
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAAC.............................................................................21155.00550541000
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAATGT...........................................................................23155.005533910030
.......................................................................................................................TATTGCACTTGAGACGGCCT.................................................................................................................................................................................................................20155.00556386041
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAATT............................................................................22155.005502721070
...........................................................................................................................................................................................................................................................AGGTCGCGGAAGGTTGCAATGCGA.........................................................................24154.005402350170
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCA...............................................................................19151.00511116111111
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGC....................................18149.00497420000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAAAG............................................................................................................................................................................................................25149.00491471000
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAATGCT..........................................................................24147.00472387000
..........................................................................................................................................................................................................................................................TAGGTCGCGGAAGGTTGCAATAA...........................................................................23145.004512320010
.....................................................................................................................................................................................................................................................................................................TATTGCACTT-TCCCCGGCCCATTA..............................24144.00440431000
.......................................................................................................................TATTGCACTTGAGACGGCCGAAGA.............................................................................................................................................................................................................24143.00431402000
droBip1
AA------AAAAAAATAATAATTGCAAG------TG---TGTGTGTTT---GGA--TTTATGTCTACAATTTTCGGGGTCATCTCCAG-TGCAAATCTTGGTT----TTT-CCAACAAGAATTGCACTCGAGACGGCCAGAATATTGTGGAT-CTATGCAGCTA--C---AAG---CCGAAAGTGTTTAGAAGTTAGCAAG---TGATTAT----------------------GATTTCGA-------------------------------------------------------------------------------TTTTATTTG----------TAGGT-TGTSizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:43 PM