der-mir-311c

miRNA [Dere\miR-311c-RA]; pre_miRNA [Dere\mir-310b-RM]; pre_miRNA [Dere\mir-311c-RM]

AAAAACTAATACTAGTTATAGGTGGTAAAAACAGTTGAAACCCCTACCCCTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCTTGTTAGAATATATTGCACATTCACCAGCCTGAAAATATCAAGGACTTACATCAAAAAGCGCTTGCAAATACACAAATATTTGCAGGACGGG *********************************************.(((.((((.(((((.((..(((((.((((...((((((........))))))..)))).))..)))..)).))))))))).)))....******************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	V107 male body	V108 head	V040 embryo	M057 embryo	GSM1528801 follicle cells	V060 head
...................................................................................................TATTGCACATTCACCAGCCTGA...........................................................	22	0	1	544.00	544	307	93	97	28	17	0	2
...................................................................................................TATTGCACATTCCCCAGCCTGAAAA........................................................	25	1	3	132.67	398	391	0	1	2	4	0	0
..............................................................CGGACGGTATCTGCGTCAATATT...............................................................................................	23	0	2	126.50	253	187	2	0	4	5	55	0
...................................................................................................TATTGCACATTCACCTGCCTGA...........................................................	22	1	2	52.50	105	91	1	1	12	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTG............................................................	21	0	1	47.00	47	17	13	11	0	2	0	4
...................................................................................................TATTGCACATTCACCAGCCTGAA..........................................................	23	0	1	33.00	33	25	3	4	0	0	0	1
...................................................................................................TATTGCACATTCACCAGCCTGAT..........................................................	23	1	1	30.00	30	24	3	1	1	1	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGAAAAA.......................................................	26	2	3	25.00	75	73	0	0	0	2	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGAAAAAA......................................................	27	2	1	22.00	22	22	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAATAT................................................................................................	22	0	2	18.50	37	35	1	0	0	0	0	1
...................................................................................................TATTGCACATTCACCAGCCTGAAA.........................................................	24	0	1	18.00	18	16	0	0	1	1	0	0
...................................................................................................TATTGCACATTCACCAGCCTGT...........................................................	22	1	1	15.00	15	1	9	5	0	0	0	0
..................................................................................................ATATTGCACATTCCCCAGCCTGA...........................................................	23	1	3	12.00	36	36	0	0	0	0	0	0
....................................................................................................ATTGCACATTCACCAGCCTGA...........................................................	21	0	1	12.00	12	12	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCCGCCTGA...........................................................	22	1	2	11.50	23	13	0	0	10	0	0	0
...............................................................GGACGGTATCTGCGTCAATATT...............................................................................................	22	0	2	11.50	23	21	0	0	0	0	2	0
...................................................................................................TATTGCACATTCACCTGCCTG............................................................	21	1	2	8.50	17	14	0	2	0	1	0	0
..............................................................CGGACGGTATCTGCGTCAATATTT..............................................................................................	24	0	2	8.00	16	2	0	0	0	0	14	0
....................................................................................................ATTGCACATTCCCCAGCCTGAAAA........................................................	24	1	3	7.00	21	21	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAATATTAAA............................................................................................	26	3	2	7.00	14	14	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCCATATT...............................................................................................	23	1	2	6.50	13	0	0	0	1	0	12	0
...................................................................................................TATTGCACATTCCCCAGCCTGAAAAAAA.....................................................	28	3	1	6.00	6	6	0	0	0	0	0	0
...................................................................................................TATTGCACATTCTCCAGCCTGA...........................................................	22	1	3	5.67	17	13	0	1	3	0	0	0
..............................................................CGGACGGTATCTGCGTCAATATTA..............................................................................................	24	1	2	5.50	11	10	1	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCT.............................................................	20	0	1	5.00	5	0	4	0	0	1	0	0
..............................................................CGGACGGTATCTGCGTCAATATTAA.............................................................................................	25	2	2	5.00	10	9	0	0	0	1	0	0
...................................................................................................TATTGCACATTCACCAGC...............................................................	18	0	1	5.00	5	0	3	2	0	0	0	0
...................................................................................................TATTGCACATTCACCATCCTGA...........................................................	22	1	1	5.00	5	2	0	2	1	0	0	0
..................................................................................................CTATTGCACATTCACCAGCCTGA...........................................................	23	1	1	4.00	4	3	0	0	0	1	0	0
..............................................................CGGACGGTATCTGCGTCAATA.................................................................................................	21	0	2	4.00	8	3	4	0	0	0	0	1
..............................................................CTGACGGTATCTGCGTCAATATT...............................................................................................	23	1	2	4.00	8	4	0	0	0	3	1	0
...................................................................................................TATTGCACATTCACCAGCCTGAC..........................................................	23	1	1	4.00	4	2	0	0	1	1	0	0
...............................................................................................GATCTATTGCACATTCCCCAGCCTGA...........................................................	26	3	1	4.00	4	0	0	0	0	4	0	0
...................................................................................................TATTGCACATTCACCAGCCTGTA..........................................................	23	1	1	4.00	4	1	2	0	0	1	0	0
..............................................................CGGACGGTATCTGCGTCAAT..................................................................................................	20	0	2	3.50	7	5	2	0	0	0	0	0
...................................................................................................TATTGCACATTCACCTGCCTGAA..........................................................	23	1	2	3.50	7	7	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGATAA........................................................	25	2	3	3.33	10	10	0	0	0	0	0	0
...................................................................................................TATTGCAAATTCACCAGCCTGA...........................................................	22	1	1	3.00	3	3	0	0	0	0	0	0
...................................................................................................TATTGCACCTTCACCAGCCTGA...........................................................	22	1	1	3.00	3	3	0	0	0	0	0	0
....................................................................................................ATTGCACATTCCCCAGCCTGAAAAAA......................................................	26	2	1	3.00	3	3	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTGAAT.........................................................	24	1	1	3.00	3	0	2	0	0	1	0	0
..............................................................CGGACGGTATCTGCGTCAATATA...............................................................................................	23	1	2	3.00	6	5	1	0	0	0	0	0
...................................................................................................TATTTCACATTCACCAGCCTGA...........................................................	22	1	1	3.00	3	1	0	0	2	0	0	0
...................................................................................................TATTGCACATTCACCACCCTGA...........................................................	22	1	1	3.00	3	2	0	1	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGATAAAA......................................................	27	3	1	3.00	3	3	0	0	0	0	0	0
...................................................................................................TATTCCACATTCACCAGCCTGA...........................................................	22	1	1	3.00	3	3	0	0	0	0	0	0
...................................................................................................TGTTGCACATTCACCAGCCTGA...........................................................	22	1	1	3.00	3	0	0	1	0	2	0	0
...................................................................................................TATTGCACATTCACCTGCCTTA...........................................................	22	2	2	2.50	5	2	0	0	3	0	0	0
..............................................................CGGACGGTATCTGCGTCAATATAAA.............................................................................................	25	3	2	2.50	5	5	0	0	0	0	0	0
................................................................................................CTATATTGCACATTCCCCAGCCTGA...........................................................	25	2	1	2.00	2	2	0	0	0	0	0	0
....................................................................................................ATTGCACATTCACCTGCCTGA...........................................................	21	1	2	2.00	4	4	0	0	0	0	0	0
...................................................................................................TATTGCACAGTCACCAGCCTGA...........................................................	22	1	1	2.00	2	1	0	0	1	0	0	0
...................................................................................................TATTGCCCATTCACCAGCCTGA...........................................................	22	1	1	2.00	2	2	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAATATTTCC............................................................................................	26	0	2	2.00	4	4	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTTA...........................................................	22	1	1	2.00	2	1	0	0	1	0	0	0
.................................................................................................TCTATTGCACATTCCCCAGCCTGA...........................................................	24	2	3	2.00	6	0	0	0	0	6	0	0
...................................................................................................TATTGCACATTCACAAGCCTGA...........................................................	22	1	1	2.00	2	0	0	2	0	0	0	0
...................................................................................................TATTACACATTCACCAGCCTGA...........................................................	22	1	1	2.00	2	1	1	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTAA...........................................................	22	1	1	2.00	2	0	0	1	0	1	0	0
...................................................................................................TATTGCACATTCACCTGCCTGAAA.........................................................	24	1	2	2.00	4	4	0	0	0	0	0	0
...................................................................................................TATTGCACATTAACCAGCCTGA...........................................................	22	1	1	2.00	2	0	0	2	0	0	0	0
...............................................................GGACGGTATCTGCGTCAATAT................................................................................................	21	0	2	2.00	4	4	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTCA...........................................................	22	1	1	2.00	2	0	0	1	1	0	0	0
..............................................................CGGACGGTATCTGCGTCAATATAA..............................................................................................	24	2	2	1.50	3	3	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCCGCCTG............................................................	21	1	2	1.50	3	0	0	1	2	0	0	0
..............................................................CGGACGGTATCTGGGTCAATATT...............................................................................................	23	1	2	1.50	3	0	0	0	0	0	3	0
...............................................................GGACGGTATCTGCGTCAATA.................................................................................................	20	0	2	1.50	3	3	0	0	0	0	0	0
...................................................................................................TATTTCACATTCACCTGCCTGA...........................................................	22	2	2	1.50	3	0	0	0	3	0	0	0
................................................................GACGGTATCTGCGTCAATATT...............................................................................................	21	0	2	1.50	3	3	0	0	0	0	0	0
...............................................................GGACGGTATCTGCGTCAATATTAAA............................................................................................	25	3	2	1.50	3	3	0	0	0	0	0	0
...................................................................................................TATTGCACATTCGCCAGCCTGA...........................................................	22	1	3	1.33	4	3	0	0	1	0	0	0
...................................................................................................TATTTCACATTCCCCAGCCTGAAAA........................................................	25	2	3	1.00	3	3	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCATCCTGAAAA........................................................	25	2	3	1.00	3	3	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTGACT.........................................................	24	2	1	1.00	1	1	0	0	0	0	0	0
...............................................................GGACGGTATCTGCGTCAATATA...............................................................................................	22	1	2	1.00	2	2	0	0	0	0	0	0
...................................................................................................TATTGCACACTCACCAGCCTGA...........................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................CAAAATATTGCACATTCCCCAGCCTGAAA.........................................................	29	3	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTGG...........................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TACTGCACATTCACCAGCCTGA...........................................................	22	1	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................TAATGCACATTCACCAGCATGA...........................................................	22	2	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................AAGCTATTGCACATTCCCCAGCCTGA...........................................................	26	3	1	1.00	1	1	0	0	0	0	0	0
................................................................................................ATTTATTGCACATTCCCCAGCCTGA...........................................................	25	2	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................GATCTATTGCACATTCCCCAGCC..............................................................	23	3	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................TATTCCACATTCACCAGCCTGATA.........................................................	24	2	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCATCCTGAA..........................................................	23	1	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TGTTGCACATTCACCAGCCTG............................................................	21	1	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTGC...........................................................	22	1	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................TTTTGCACATTCACCAGCCTG............................................................	21	1	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAACCTGA...........................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACTAGCCTGA...........................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................GATCTATTGCACATTCCCCAGCCTG............................................................	25	3	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................TATTGCACATACACCAGCCTGAA..........................................................	23	1	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................GATTGCACATTCACCAGCCTG............................................................	21	1	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTTCACATTCACCAGCCTGT...........................................................	22	2	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................TATTGCATATTCACCAGCCTG............................................................	21	1	1	1.00	1	0	1	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCCATATTT..............................................................................................	24	1	2	1.00	2	0	0	0	0	0	2	0
...................................................................................................TATTGCACATTCACCAGTCGGT...........................................................	22	3	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................TATCGCACATTCACCAGCCTGAA..........................................................	23	1	1	1.00	1	0	0	0	0	1	0	0
..............................................................CGGACGGTATCTGCGTCAATATTTCCT...........................................................................................	27	0	2	1.00	2	1	1	0	0	0	0	0
...................................................................................................TATTGCACATTCACCATCCTAA...........................................................	22	2	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................TAGTGCACATTTACCAGCCTGAAAA........................................................	25	2	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TAGTGCACATTCACCAGCCTGAT..........................................................	23	2	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................ATTGCACATTCACCAGCCTGAA..........................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGACTGATT.........................................................	24	3	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................GATTTATTGCACATTCCCCAGCCTGA...........................................................	26	3	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................TATTGCGCATTCACCAGCCTGA...........................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................ATTGCACATTCACCAGCATGA...........................................................	21	1	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCATCAGCCTGA...........................................................	22	1	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................TATTGCACATTTACCAGACTGA...........................................................	22	2	1	1.00	1	1	0	0	0	0	0	0
..........................................CCTACCCCTAGATAGTTTTT......................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................TATTGCAGATTCACCAGGGTGAAA.........................................................	24	3	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................CTATTGCACATTCACCAGCCTGAA..........................................................	24	1	1	1.00	1	0	0	0	0	1	0	0
..............................................................CGTACGGTATCTGCGTCAATATT...............................................................................................	23	1	2	1.00	2	2	0	0	0	0	0	0
...................................................................................................TATTGAACATTCACCAGCCTGA...........................................................	22	1	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTGAAC.........................................................	24	1	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................TATTGCGCATTCCCCAGCCTGAAAAAA......................................................	27	3	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCATGA...........................................................	22	1	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................TTGCACATTCACCAGCCTGA...........................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTAAAAAAA......................................................	27	3	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCACGA...........................................................	22	2	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................ATTGCACATTCCCCAGCCTGAAAAAAA.....................................................	27	3	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCAACAGCCTGA...........................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................ATTGCACATTCACCAGCCTG............................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTGATT.........................................................	24	2	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCAAATTCACCAGCCTG............................................................	21	1	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................TATTGCACATTCACCAGCCTGAG..........................................................	23	1	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGACTGA...........................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCATCCCG............................................................	21	2	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................TATTGCACATTCACCATCCTGT...........................................................	22	2	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................ATATTGCACATTTACCAGCCTGA...........................................................	23	1	1	1.00	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGCCAATATT...............................................................................................	23	1	2	1.00	2	1	1	0	0	0	0	0
..............................................................CGGACGGCATCTGCGTCAATATT...............................................................................................	23	1	2	1.00	2	1	0	0	0	0	1	0
...................................................................................................TATTGCACATTCCCCAGCCTTAAAAAA......................................................	27	3	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATATTGCACATTCCCCAGCCTGAAAA........................................................	26	1	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................AAACTATTGCACATTCACCAGCCTGAAA.........................................................	28	2	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCACCCTGT...........................................................	22	2	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................TACTGCACATTCACCAGCCTGT...........................................................	22	2	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................TTGCACATTCCCCAGCCTGAAAA........................................................	23	1	3	1.00	3	3	0	0	0	0	0	0
.....................................................................................................TTGCACATTCACCAGCCTGATA.........................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................ATTATATTGCACATTCCCCAGCCTGA...........................................................	26	2	1	1.00	1	1	0	0	0	0	0	0
................................................................................................ATCTATTGCACATTCCCCAGCCTGAA..........................................................	26	2	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCAGATTCACCACCCTGAAA.........................................................	24	2	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCTGCCTGAAAA........................................................	25	1	2	1.00	2	2	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCA....................................................................................................	18	0	2	1.00	2	1	0	0	0	0	1	0
...................................................................................................TTTTGCACATTCTCCAGCCTGA...........................................................	22	2	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................TAGTGCACATTCCCCAGCCTGAAAA........................................................	25	2	3	0.67	2	2	0	0	0	0	0	0
..................................................................................................ATATTGCACATTCCCCAGCCTGAA..........................................................	24	1	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTAAAAA........................................................	25	2	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................GATTGCACATTCCCCAGCCTGAAAA........................................................	25	2	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................TTTTGCACATTCCCCAGCCTGAAAA........................................................	25	2	3	0.67	2	2	0	0	0	0	0	0
..................................................................................................ATATTGCACATTCCCCAGCCTGAAA.........................................................	25	1	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTTAAAA........................................................	25	2	3	0.67	2	2	0	0	0	0	0	0
..................................................................................................CTATTGCACATTCCCCAGCCTGAAAAA.......................................................	27	3	3	0.67	2	1	0	0	0	1	0	0
...................................................................................................TATTGCACATTCCCCACCCTGAAAA........................................................	25	2	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................TATTGCCCATTCCCCAGCCTGAAAAA.......................................................	26	3	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCTAGCCTGAAAA........................................................	25	2	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGTAAA........................................................	25	2	3	0.67	2	2	0	0	0	0	0	0
....................................................................................................ATTGCACATTCTCCAGCCTGA...........................................................	21	1	3	0.67	2	2	0	0	0	0	0	0
..................................................................................................CTATTGCACATTCCCCAGCCTGATAA........................................................	26	3	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGATAAA.......................................................	26	3	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................TATTCCACATTCACCTGCCTGA...........................................................	22	2	3	0.67	2	0	0	0	2	0	0	0
...................................................................GGTATCTGCGTCAATATT...............................................................................................	18	0	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAATAAA...............................................................................................	23	2	2	0.50	1	0	0	0	0	1	0	0
..............................................................CGGACGGTATCTGCGTCACTAT................................................................................................	22	1	2	0.50	1	0	0	0	1	0	0	0
..............................................................CGGACGGTATCTGCTTCAATAT................................................................................................	22	1	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAATT.................................................................................................	21	1	2	0.50	1	1	0	0	0	0	0	0
..................................................................................................CTATTGCACATTCACCTGCCTTA...........................................................	23	3	2	0.50	1	0	0	0	1	0	0	0
.................................................................................................TATATTGCACATTCCCCCGCCTGA...........................................................	24	2	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGGATCTGCGTCAATATT...............................................................................................	23	1	2	0.50	1	0	0	0	0	0	1	0
...................................................................................................TATTGCACATTCACCCCCCTGA...........................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCCCATTCACCAGCCGAA...........................................................	22	3	2	0.50	1	0	0	0	1	0	0	0
...............................................................GGACGGTATCTGCGTCCCTATT...............................................................................................	22	2	2	0.50	1	0	0	0	0	0	1	0
..............................................................CGGACGGCATCTCCGTCAATATT...............................................................................................	23	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCTGCCGGA...........................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAATATTG..............................................................................................	24	1	2	0.50	1	1	0	0	0	0	0	0
...........................................................AGCCGGACGGTATCTGCGTCAATATT...............................................................................................	26	3	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAATATTAG.............................................................................................	25	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACTTGCCTGAA..........................................................	23	2	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACTGTATCTGCGTCAATATT...............................................................................................	23	1	2	0.50	1	0	0	0	0	1	0	0
..............................................................CGGACGGCATCTGCGTCAATA.................................................................................................	21	1	2	0.50	1	0	0	0	0	1	0	0
..............................................................CGGACGGTCTCTGCGTCAATATT...............................................................................................	23	1	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGTCGGTATCTGCGTCAATATT...............................................................................................	23	1	2	0.50	1	0	0	0	0	1	0	0
...................................................................................................AATTGCACATCCACCTGCCTGA...........................................................	22	3	2	0.50	1	0	0	0	1	0	0	0
...................................................................................................TATTGCACATTCACCTGCCGG............................................................	21	2	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGCATCTGCGTCAATATTAA.............................................................................................	25	3	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTAACTGCGTCAATATT...............................................................................................	23	1	2	0.50	1	0	0	0	0	0	1	0
................................................................GACGGTATCTGCGTCAATATTAAA............................................................................................	24	3	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TCTTGCGCATTCACCCGCCTGA...........................................................	22	3	2	0.50	1	0	0	0	1	0	0	0
...................................................................................................TATTGCACATTCACCTTCCTGAA..........................................................	23	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCTGCCTGC...........................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGCCGGTATCTGCGTCAATAT................................................................................................	22	1	2	0.50	1	1	0	0	0	0	0	0
...............................................................GGACGGTATCTGCGTCAATATTA..............................................................................................	23	1	2	0.50	1	1	0	0	0	0	0	0
...............................................................GGACGGTATCTGCGTCAATAAA...............................................................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGCATCTGCGTCAATGTT...............................................................................................	23	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACTTGCCTGA...........................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCTGCCTAA...........................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTAGCTGCGTCAATATT...............................................................................................	23	1	2	0.50	1	0	0	0	0	0	1	0
.........................................................................................................................AAATATCAAGGACTTACATC.......................................	20	0	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TACTGCACATTCACCTGCCTGA...........................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TGTTGCACATTCACCCGCCTGA...........................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTCCACATTCACCCGCCTGA...........................................................	22	2	2	0.50	1	0	0	0	1	0	0	0
...................................................................................................TATTGCACATACACCTGCCTGA...........................................................	22	2	2	0.50	1	0	0	0	1	0	0	0
..............................................................CGGACGGTATCTGCGTCCATAAT...............................................................................................	23	2	2	0.50	1	0	0	0	0	0	1	0
..............................................................CGGACGGTATCTGGGTCAATATTT..............................................................................................	24	1	2	0.50	1	0	0	0	0	0	1	0
..............................................................CGGACGGCATATGCGTCAATATT...............................................................................................	23	2	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAGTAT................................................................................................	22	1	2	0.50	1	1	0	0	0	0	0	0
...............................................................GGACGGTATCTGCGTCAATAA................................................................................................	21	1	2	0.50	1	1	0	0	0	0	0	0
................................................................GACGGGATCTGCGTCAATATTAA.............................................................................................	23	3	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCCGCCGGA...........................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCTGCCT.............................................................	20	1	2	0.50	1	1	0	0	0	0	0	0
..........................................................................................................................AATATCAAGGACTTACATTAAAAAG.................................	25	1	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCTTCCATATT...............................................................................................	23	2	2	0.50	1	0	0	0	0	0	1	0
................................................................GACGGTATCTGCGTCAATATTA..............................................................................................	22	1	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACCTACACCTGCCTGA...........................................................	22	3	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAATGTT...............................................................................................	23	1	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TAGTGCACATTCACCCGCCTGA...........................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCCGCGTCAATATTA..............................................................................................	24	2	2	0.50	1	1	0	0	0	0	0	0
...............................................................GGACGGTATCTCCGTCAATATT...............................................................................................	22	1	2	0.50	1	1	0	0	0	0	0	0
..............................................................AGGACGGTATTTGTGTCAATAT................................................................................................	22	3	2	0.50	1	0	0	0	1	0	0	0
..............................................................TGGACGGTATCTGCGTCAATATT...............................................................................................	23	1	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGGGTCCATATT...............................................................................................	23	2	2	0.50	1	0	0	0	0	0	1	0
...............................................................GAACGGTATCTGCGTTAATATT...............................................................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCCGCCTCA...........................................................	22	2	2	0.50	1	0	0	0	1	0	0	0
..............................................................CGGACGGTATCTGCGTCAATAA................................................................................................	22	1	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGAAGGTATCTGCTTCAATAT................................................................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTACATATT...............................................................................................	23	2	2	0.50	1	0	0	0	0	0	1	0
..............................................................CAGACGGTATCTGCGTCAATAT................................................................................................	22	1	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAATATTTCCTG..........................................................................................	28	1	2	0.50	1	1	0	0	0	0	0	0
....................................................................................................ATTGCACATTCACCTGCCTGG...........................................................	21	2	2	0.50	1	1	0	0	0	0	0	0
...............................................................GGACGGTATCCGCGTCAATATT...............................................................................................	22	1	2	0.50	1	1	0	0	0	0	0	0
..................................................................................................CTATTGCACATTCACCTGCCTG............................................................	22	2	2	0.50	1	1	0	0	0	0	0	0
................................................................CACGGTATCTGCGTCAATATT...............................................................................................	21	1	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGCGTCAATATG...............................................................................................	23	1	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCCGCCTAA...........................................................	22	2	2	0.50	1	0	0	0	1	0	0	0
...............................................................GGACGGCATCTGCGTCAATATT...............................................................................................	22	1	2	0.50	1	1	0	0	0	0	0	0
..............................................................CGGACGGTATCTGTGTCAATATT...............................................................................................	23	1	2	0.50	1	0	0	0	0	0	1	0
..............................................................CGGACGGTATCTGCATCAATATT...............................................................................................	23	1	2	0.50	1	1	0	0	0	0	0	0
..............................................................CTGACGGTATCTGCGTCAATATTT..............................................................................................	24	1	2	0.50	1	0	0	0	0	1	0	0
....................................................................................................ATTGCACATTCCCCATCCTGAAAA........................................................	24	2	3	0.33	1	1	0	0	0	0	0	0
....................................................................................................ATTGCACATTCCCCAGCCTGAAAAA.......................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACATGGCTGA...........................................................	22	3	3	0.33	1	0	0	0	1	0	0	0
..................................................................................................ATATTGCACATTCCCCAGCCTG............................................................	22	1	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................CATTGCACATTCCCCAGCCTGAAAAA.......................................................	26	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCTCCAGCCT.............................................................	20	1	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACAGTCTCCAGCCTGT...........................................................	22	3	3	0.33	1	0	0	0	1	0	0	0
...................................................................................................TATTGTACATTCCCCAGCCTGAAAA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGAGTA........................................................	25	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGAAAAAT......................................................	27	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCCCATTCACCTGACTGA...........................................................	22	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGAACA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGACAA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
..................................................................................................AGATTGCACATTCCCCAGCCTGA...........................................................	23	2	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................GATATTGCACATTCCCCAGCCTGAA..........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................TTTATTGCACATTCCCCAGCCTGATA.........................................................	26	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCCCATTCTCCAGCCTGA...........................................................	22	2	3	0.33	1	1	0	0	0	0	0	0
..................................................................................................ATATTGCACATTCCCCAGCCT.............................................................	21	1	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCTCAGCCTGAAAA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGATTA........................................................	25	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACCTTCACCTGACTGA...........................................................	22	3	3	0.33	1	1	0	0	0	0	0	0
..................................................................................................CTATTGCACATTCCCCAGCCTGAAAA........................................................	26	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TACTGCACATTCCCCAGCCTGAAAA........................................................	25	2	3	0.33	1	0	0	0	0	1	0	0
................................................................................................AGCTATTGCACATTCCCCAGCCTGA...........................................................	25	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAACCTGAAAAA.......................................................	26	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TTTTGCACATTCGCCAGTCTGA...........................................................	22	3	3	0.33	1	0	0	0	1	0	0	0
...................................................................................................TATTGCCCATTCCCCAGCCTGAAAA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCGCCAGCCTGAA..........................................................	23	1	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCTCCATCCTGA...........................................................	22	2	3	0.33	1	0	0	0	1	0	0	0
...................................................................................................TATTGAACATTCCCCAGCCTGAAAA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................ATTATTGCACATTCACCAGCCTG............................................................	23	2	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................TTTATTGCACATTCCCCAGCCTGA...........................................................	24	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCAAATTCCCCAGCCTGAAAA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCTCCAGCCTG............................................................	21	1	3	0.33	1	0	0	0	1	0	0	0
...................................................................................................TATTGCACATTCTCCAGCCGGA...........................................................	22	2	3	0.33	1	1	0	0	0	0	0	0
.....................................................................................................TTGCACATTCCCCAGCCTGAAAAC.......................................................	24	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCTCCAGCCTGAAA.........................................................	24	1	3	0.33	1	1	0	0	0	0	0	0
.....................................................................................................TTGCACATTCCCCAGCCTGAAAAA.......................................................	24	2	3	0.33	1	1	0	0	0	0	0	0
....................................................................................................ATTGCACATTCCCCAGCCTGTAAAA.......................................................	25	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTTCACATTCCCCAGCCTGAAAAA.......................................................	26	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................CATTGCACATTCCCCAGCCTGAAAA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
..................................................................................................ATAATGCACATTCCCCAGCCTGA...........................................................	23	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCAAATTCCCCAGCCTGAAAAA.......................................................	26	3	3	0.33	1	1	0	0	0	0	0	0
................................................................................................TCATATTGCACATTCCCCAGCCTGA...........................................................	25	3	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGAAAATT......................................................	27	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCTGAGGA........................................................	25	3	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................GATATTGCACATTCCCCAGCCTGA...........................................................	24	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCACCAGCCTGAAAG........................................................	25	1	3	0.33	1	0	1	0	0	0	0	0
...................................................................................................TATTGCACATTCCCCAGCCGGAAAA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TGTTGCACATTCCCCAGCCTGAAAA........................................................	25	2	3	0.33	1	0	0	0	0	1	0	0
...................................................................................................TATTGCACATTTCCCAGCCTGAAAA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
..................................................................................................ATATCGCACATTCCCCAGCCTGA...........................................................	23	2	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................TCTATTGCACATTCCCCAGCCTGAAA.........................................................	26	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTACACATTCCCCAGCCTGAAAA........................................................	25	2	3	0.33	1	1	0	0	0	0	0	0
................................................................................................AGCTATTGCACATTCCCCAGCCTG............................................................	24	3	3	0.33	1	1	0	0	0	0	0	0
.....................................................................................................TTGCACATTCCCCAGCCTGGAAA........................................................	23	2	3	0.33	1	0	0	0	0	1	0	0
...................................................................................................TATTGCACATTCACCCGCCCTA...........................................................	22	3	3	0.33	1	0	0	0	1	0	0	0
...................................................................................................TATTGCCCCTTCTCCAGCCTGA...........................................................	22	3	3	0.33	1	0	0	0	1	0	0	0
....................................................................................................ATTGCACATTCCCTAGCCTGAAAA........................................................	24	2	3	0.33	1	1	0	0	0	0	0	0
...................................................................................................TATTGCACATTCTCCAGCCTTA...........................................................	22	2	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................TCTATTGCACATTCCCCAGCCTG............................................................	23	2	3	0.33	1	0	0	0	0	1	0	0
.................................................................................................CATATTGCACATTCCCCAGCCTGA...........................................................	24	2	3	0.33	1	1	0	0	0	0	0	0
...............................................................................................AAATTATTGCACATTCCCCAGCCTGA...........................................................	26	3	3	0.33	1	1	0	0	0	0	0	0

TTTTTGATTATGATCAATATCCACCATTTTTGTCAACTTTGGGGATGGGGATCTATCAAAAAGCCTGCCATAGACGCAGTTATAAAGGAACAATCTTATATAACGTGTAAGTGGTCGGACTTTTATAGTTCCTGAATGTAGTTTTTCGCGAACGTTTATGTGTTTATAAACGTCCTGCCC ******************************************.(((.((((.(((((.((..(((((.((((...((((((........))))))..)))).))..)))..)).))))))))).)))....*********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V040 embryo	V107 male body
.................TAACCACCACTTTTGTCAACA..............................................................................................................................................	21	3	4	0.25	1	1	0
......................................TAGGGGGTGGGGACCTATC...........................................................................................................................	19	3	10	0.10	1	0	1
........................CAATTTTGTGAATTTTGGGG........................................................................................................................................	20	3	20	0.05	1	1	0
..............................................................................................................GTGTACGGACTTCTATAGT...................................................	19	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droEre2	scaffold_4845:10617958-10618137 -	der-mir-310b	AAAAACTAA--------------------T---------------------------------------------------------ACT----------------------------AGTTATAGGTGGTA-AAA---A-----------CAG------------TTGAAA------------CCCCTACCCCTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCT--TGTTAGAATATATTGCACATTCACCAGCCTGAAAATATCAAGGACTTACATCAA---------AAAG--------------------------------CGCTT-GCAA-----AT--ACACAAATATTTGCAGGACGGG
droYak3	2R:12724791-12724956 +	dya-mir-310	ACGCATTAA----------------------------------------------------------------------------------------------------------------------------AAA---A-----------CAG------------TTTAAA--------AATATCTCACTTTCTAGATAGTTTTGCGGACGGTATCTGCGTCAATATTTCCT--TGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACTTGCATCGA---------AAAG--------------------------------TGCTT-GCAA-----AT--ACACAAACATTTGCAGGACGGG
droSec2	scaffold_1:14025546-14025737 -	dse-mir-310	AAA--GT-------AATTAGT---TTTT------TT--------------------------------------------------TCCT----------------------------TGCAATAGGCGGCA-------------AG---AC--------------------------------TGGAAATTTCTAGATAATTTTTCGGACGGTATATGAGTCAATGTTTTCT--TTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGA---------AAAA--------------------GAAAAATAAAAGTGCTT-GCAA-----AA--ACATAAACATTTGCAGGACGGG
droSim2	2r:17040801-17041001 -	dsi-mir-310	AAA--GT-------AATTAGT---TTTT-------T--------------------------------------------------TCCT----------------------------TGCAATAGGCGGCA-------------AG---ACAG-----------------------TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGAGTCAATATTTTTTTTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGA---------AAAA--------------------GAAA-AAAAAAGTGCTT-GCAA-----AA--ACATAAACATTTGCAGGACGGG
dm3	chr2R:16471323-16471536 -	dme-mir-310	GCAAAGTA-------ATTAGT---TTTGTTGTGTTTTTAAAC--------------------------------------------TCCT----------------------------TGCAATAGGCGGCA-------------AG---ACGG-----------------------TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCAT--TTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGA---------AAAG--------------------TGAA-AAAAAAGTGTTT-GCGA-----AA--ACATAAACATTTGCAGGGCGGG
droEug1	scf7180000409474:1490147-1490374 +		GAAAACTAAG---TGT---------------TAATTT--------------------------------------TTTGTTA---ATAGTTGTA--GTTTTCGGCTTATAAAG-TTCCAGCAGAA--TAAAT--AA---ATAGTT--GGGAGAG-----------------------AACAGAGTTGAAATTCCTAAATA-TTTTTAGGCCTGTGTCTGT-TCAATATAATTA--TTTAAAAATATATTGCACACTCACCGGCCTGAAAAGATTAGGGATATTCTTTAA---------AAAG--------------------------------TGAGT-GCAC-----GT--ACACAAACATTTGCAGGTGGGG
droBia1	scf7180000302291:2816329-2816588 +		TAAAACTAGCAGTCGAC--------CAGCTTTATTTTGCAGGCCGAGGTGGGTGGCAATGCGATGCT-----TTC---TTCCCGTA---TTGCACTTGCCCCGGCCTATAAAC-TCG-AGCAAGAAGCGTAA-AAA---T-----------CGG------------TTTAAA---------------TGGTTCCGAGATAGTTTTTCGGACGGTGTTTGTGACAATATTTTAG---GTTTAAAAATATTGCACATTCACCGGCCTCTAAACATCAAGGGCATTCCTCAA---------AAAG--------------------------------CGCCT-GCAA-----AT--ACACAAGCATTTGCAGGCCGGG
droTak1	scf7180000415401:99695-99958 -		AATAGTGA-------------AACTTTGCTGTAATTTACATGTCGCGGGCGGTGACAATGCGAGTTAT-----G-TTTATTACGTA---TTGCACTGGCCCCGGCCTATAAAC-TTC-GGCTATAAACAGCAAAAA---A-----------TAA------------TTCAAA--------------TTAATTCCAAGATAGTTTTTCGGACGGTGTCTGCGTCAATATTTCAG--TTTTAAAACATATTGCACATTCACCGGCCTGAAAATATCAAGGGTGTTCCTCAA---------AAAG--------------------------------TTCCT-GCAA-ATACAC--ACACACACATTTGCAGGCTGGG
droEle1	scf7180000491201:735938-736214 -		AAATATTT-------------AATTCGGCATTAATTTATATGTCGCTGGCGGTGACAATACGAGCATT-----T-AATTTTACGTA---TTGCACTGGCCCCGGCTAATAGAA-TTCTGCCAGAAAACGACAAA-AAAAAAAGAA--GGG----------------TTTGAT-------------C-TAAGACCTAGATTCTTTTTCGGACGGTATCTGCGACAATATGCGAA---CTTTTAACATATTGCACATTTACCGGCCTGAAATTATCATGGATATTCATCAAGATATTTTAAAAG--------------------------------CTTTT-GCAA-----T-GTACACAAACATTTGCAGGCGGGG
droRho1	scf7180000780104:82033-82304 -		AAAAAGTT-------------ATTTTTGCATTAATTTATATGTCGCTGGCGGTGACAATACAAGTTGTTGGTTTT---TTTTCGTA---TTGCACTGGCCCCGGCTTATAAAA-TCCTGGCATTAAACGGCGAA-A---A-------GTG----------------TTCAAA-------------C-TAAGTCCTAGGTTGTTTTTCGGACGGTATTTGTGACAATATGCTTA--ATTTTAGACATATTGCACATTTACCGGCCTGAAATTAACATGGATATTCTTCGA--TATTTGTAAAG--------------------------------TTCCTGGC-A-----GTACACACAAACATTTGTAGGCGGGG
droFic1	scf7180000454039:1775999-1776257 -		AAGACCCAA------------------------AATTCTGAGCCGTGGACAGTGATAATGCGATTTT------TA---TTTGCGTA---TTGCACTGGTCCCGGCCTATAAAA-TT--GGCGTAGAACGACGAA-A---A-------GAG-TGTTTTTTTATTTTTTT---------------TTATTTGTTTCCGGACAGTTGTTTGGACGGAAGATGCGCCAGTATGCGGA--TTTTTAAGCATATTGCACATTTACCGGCCTAGTAATGCACTGGCTATTCATCAA---------TTAT---------------------------------TTAT-GCAA-----ATGCACAAAAACATTTGCAGGCGGGG
droKik1	scf7180000302471:941364-941531 -		TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCAGACACTGGTCAGGACGGGATCTGTGTCAATACGTGAT---TTTGATTCATATTGCACACATACCGGCCTGATAATGTCTGGGCTATTCGTCAG---------ATAGTGTACGCTTTAGTTTTCAGTGAAAGTAAAAGGTGTCG-G----ACGAAT--GCACGAACATTTGCAGTCTGGC
droAna3	scaffold_13266:4132794-4133071 +	dan-mir-310	AAAAAGT-------GTTTAG-AACTTCGATTTTATTTGTAGGTCGCGGAAGGTTGCAATGCGTATTT-------T---GAATCGTA---TTGCACTTTCCCCGGCCCATAGATATTA-TACGAACAGCA------------------GCG----------------ATCGCTATCTGAGAGAAATATTTGTTGCCAGATTATCTTCAGGACGGTATTTGTGTCAATATGGATA---TTTCAAACATATTGCACTTATACCGGCCTGATGATCTCCGGCG--CTCGTCAT-----CTG-TGAC--------------------T------AAAAGTGCGA-A-AATAGCAAA--ACATAAACACTTGCAGGACGGG
droBip1	scf7180000396427:2575504-2575793 +		AGAAGTTAGCAAGTGATTAT-GATTTCGATTTTATTTGTAGGTTGTGGAAGGTTGCAAAGCGTATTT-------T---TAATCGTA---TTGCACTTTCCCCAGCCCATAGATATTA-TGCGAATAGCA------------------GCG----------------TCCGGTATGTGAGTGAAATATTTGTGGCCAGATACCCTTTAGGTCGGTATTTGTGACAATATGATA----TTTCAATCATATTGCACTTGTACCGGCCTGATAATATCTGGCA--TTCGTCAT-----CTG-TGAG--------------------TCTG-TGAAAAGTGCGC-GAAATATCAAA--ACATAAACACTTGCAGGACGGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

AAAAACTAA--------------------T---------------------------------------------------------ACT----------------------------AGTTATAGGTGGTA-AAA---A-----------CAG------------TTGAAA------------CCCCTACCCCTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCT--TGTTAGAATATATTGCACATTCACCAGCCTGAAAATATCAAGGACTTACATCAA---------AAAG--------------------------------CGCTT-GCAA-----AT--ACACAAATATTTGCAGGACGGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGA............................................................................................................	22	1	544.00	544	307	17	2	28	93	97	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATT..................................................................................................................................................	23	2	126.50	253	187	5	0	4	2	0	55
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTG.............................................................................................................	21	1	47.00	47	17	2	4	0	13	11	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGAA...........................................................................................................	23	1	33.00	33	25	0	1	0	3	4	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGAT...........................................................................................................	23	1	30.00	30	24	1	0	1	3	1	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATAT...................................................................................................................................................	22	2	18.50	37	35	0	1	0	1	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGAAA..........................................................................................................	24	1	18.00	18	16	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGT............................................................................................................	22	1	15.00	15	1	0	0	0	9	5	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCAGCCTGA............................................................................................................	21	1	12.00	12	12	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATCTGCGTCAATATT..................................................................................................................................................	22	2	11.50	23	21	0	0	0	0	0	2
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTT.................................................................................................................................................	24	2	8.00	16	2	0	0	0	0	0	14
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTAAA...............................................................................................................................................	26	2	7.00	14	14	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTA.................................................................................................................................................	24	2	5.50	11	10	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCT..............................................................................................................	20	1	5.00	5	0	1	0	0	4	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTAA................................................................................................................................................	25	2	5.00	10	9	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGC................................................................................................................	18	1	5.00	5	0	0	0	0	3	2	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATA....................................................................................................................................................	21	2	4.00	8	3	0	1	0	4	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGAC...........................................................................................................	23	1	4.00	4	2	1	0	1	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAAT.....................................................................................................................................................	20	2	3.50	7	5	0	0	0	2	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGAAT..........................................................................................................	24	1	3.00	3	0	1	0	0	2	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATA..................................................................................................................................................	23	2	3.00	6	5	0	0	0	1	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATAAA................................................................................................................................................	25	2	2.50	5	5	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTTCC...............................................................................................................................................	26	2	2.00	4	4	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATCTGCGTCAATAT...................................................................................................................................................	21	2	2.00	4	4	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATAA.................................................................................................................................................	24	2	1.50	3	3	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATCTGCGTCAATA....................................................................................................................................................	20	2	1.50	3	3	0	0	0	0	0	0
................................................................................................................................................................................................................GACGGTATCTGCGTCAATATT..................................................................................................................................................	21	2	1.50	3	3	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATCTGCGTCAATATTAAA...............................................................................................................................................	25	2	1.50	3	3	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGACT..........................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATCTGCGTCAATATA..................................................................................................................................................	22	2	1.00	2	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGG............................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGC............................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTTCCT--............................................................................................................................................	27	2	1.00	2	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCAGCCTGAA...........................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................CCTACCCCTAGATAGTTTTT.........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGAAC..........................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTGCACATTCACCAGCCTGA............................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCAGCCTG.............................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGATT..........................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGAG...........................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCA.......................................................................................................................................................	18	2	1.00	2	1	0	0	0	0	0	1
...................................................................................................................................................................................................................GGTATCTGCGTCAATATT..................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATAAA..................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATT....................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTG.................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTAG................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................GACGGTATCTGCGTCAATATTAAA...............................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATCTGCGTCAATATTA.................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATCTGCGTCAATAAA..................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AAATATCAAGGACTTACATC........................................................................................	20	2	0.50	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATCTGCGTCAATAA...................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................GACGGTATCTGCGTCAATATTA.................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATAA...................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTTCCT--G...........................................................................................................................................	28	2	0.50	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATG..................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCAGCCTGAAAG.........................................................................................................	25	3	0.33	1	0	0	0	0	1	0	0

droYak3

ACGCATTAA----------------------------------------------------------------------------------------------------------------------------AAA---A-----------CAG------------TTTAAA--------AATATCTCACTTTCTAGATAGTTTTGCGGACGGTATCTGCGTCAATATTTCCT--TGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACTTGCATCGA---------AAAG--------------------------------TGCTT-GCAA-----AT--ACACAAACATTTGCAGGACGGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGA............................................................................................................	22	1	29661.00	29661	307	9351	14039	5878	14	11	42	0	1	0	18
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAA...........................................................................................................	23	1	3321.00	3321	21	745	2354	199	0	0	1	1	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTG.............................................................................................................	21	1	2270.00	2270	93	952	665	545	1	1	13	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAA..........................................................................................................	24	1	1775.00	1775	9	697	1008	56	1	0	4	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCC...............................................................................................................	19	1	1175.00	1175	38	7	1127	2	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGA............................................................................................................	21	1	670.00	670	0	591	62	17	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAT...........................................................................................................	23	1	549.00	549	32	242	249	21	0	1	3	1	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATT..................................................................................................................................................	23	1	219.00	219	0	126	77	14	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAA.........................................................................................................	25	1	189.00	189	0	114	67	7	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGT............................................................................................................	22	1	162.00	162	28	43	42	25	0	2	22	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAC...........................................................................................................	23	1	134.00	134	4	21	107	2	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCT..............................................................................................................	20	1	133.00	133	1	56	31	16	0	0	3	6	0	20	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGG............................................................................................................	22	1	123.00	123	64	30	11	18	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGC............................................................................................................	22	1	95.00	95	3	3	51	38	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAT..........................................................................................................	24	1	79.00	79	3	20	46	10	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAA...........................................................................................................	22	1	78.00	78	0	48	29	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAA..........................................................................................................	23	1	66.00	66	0	53	13	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTG.............................................................................................................	20	1	62.00	62	0	58	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGA............................................................................................................	20	1	37.00	37	0	28	9	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA........................................................................................................	26	1	29.00	29	0	25	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAT...........................................................................................................	22	1	27.00	27	1	15	11	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGATT..........................................................................................................	24	1	25.00	25	6	7	7	5	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATAT...................................................................................................................................................	22	1	23.00	23	0	7	10	5	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAC..........................................................................................................	24	1	23.00	23	0	4	18	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CATTCACCGGCCTGA............................................................................................................	15	1	22.00	22	0	0	0	0	0	0	0	0	0	0	22
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAG...........................................................................................................	23	1	20.00	20	1	9	8	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GCACATTCACCGGCCTGA............................................................................................................	18	1	19.00	19	1	10	4	4	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAG..........................................................................................................	24	1	19.00	19	1	7	8	3	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTGA............................................................................................................	23	1	15.00	15	0	12	2	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATCTGCGTCAATATT..................................................................................................................................................	22	1	13.00	13	0	13	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGTT...........................................................................................................	23	1	11.00	11	9	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCC..............................................................................................................	20	1	11.00	11	0	0	11	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TGCACATTCACCGGCCTGA............................................................................................................	19	1	9.00	9	0	7	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGACT..........................................................................................................	24	1	8.00	8	2	3	2	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTAA................................................................................................................................................	25	1	7.00	7	0	3	3	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAC.........................................................................................................	25	1	7.00	7	0	2	5	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTA.................................................................................................................................................	24	1	6.00	6	0	5	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGAA...........................................................................................................	21	1	6.00	6	0	1	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGC................................................................................................................	18	1	6.00	6	0	0	3	2	0	0	1	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATA....................................................................................................................................................	21	1	6.00	6	0	1	2	1	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTT.............................................................................................................	21	1	5.00	5	0	4	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAC...........................................................................................................	22	1	5.00	5	0	4	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAAT.....................................................................................................................................................	20	1	5.00	5	2	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAA.........................................................................................................	24	1	5.00	5	0	4	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCT..............................................................................................................	19	1	5.00	5	0	5	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTG.............................................................................................................	19	1	5.00	5	0	4	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATC..................................................................................................................................................	23	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAT..........................................................................................................	23	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGAAA..........................................................................................................	22	1	4.00	4	0	2	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACATTCACCGGCCTGAAA..........................................................................................................	18	1	4.00	4	0	1	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTA.............................................................................................................	21	1	3.00	3	1	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAGT..........................................................................................................	24	1	3.00	3	1	0	1	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGT............................................................................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGATT..........................................................................................................	23	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAG...........................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAG.........................................................................................................	25	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTG.............................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGTC...........................................................................................................	23	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAT........................................................................................................	26	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAT.........................................................................................................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0

droSec2

AAA--GT-------AATTAGT---TTTT------TT--------------------------------------------------TCCT----------------------------TGCAATAGGCGGCA-------------AG---AC--------------------------------TGGAAATTTCTAGATAATTTTTCGGACGGTATATGAGTCAATGTTTTCT--TTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGA---------AAAA--------------------GAAAAATAAAAGTGCTT-GCAA-----AA--ACATAAACATTTGCAGGACGGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGA............................................................................................................	22	1	16540.00	16540	13468	45	2699	328
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTG.............................................................................................................	21	1	1017.00	1017	718	6	266	27
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAA...........................................................................................................	23	1	904.00	904	699	2	185	18
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGA............................................................................................................	21	1	846.00	846	795	0	48	3
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAA..........................................................................................................	24	1	533.00	533	403	0	123	7
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAT...........................................................................................................	23	1	125.00	125	85	1	34	5
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGT............................................................................................................	22	1	85.00	85	59	7	15	4
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCT..............................................................................................................	20	1	83.00	83	55	1	25	2
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAA.........................................................................................................	25	1	75.00	75	54	1	19	1
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAA...........................................................................................................	22	1	59.00	59	56	1	2	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGTT..................................................................................................................................................	23	1	48.00	48	40	1	5	2
.......................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGA............................................................................................................	20	1	43.00	43	36	0	7	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAT..........................................................................................................	24	1	37.00	37	1	4	31	1
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTG.............................................................................................................	20	1	36.00	36	31	0	5	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAA..........................................................................................................	23	1	29.00	29	28	0	1	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAC...........................................................................................................	23	1	21.00	21	17	0	4	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA........................................................................................................	26	1	20.00	20	16	0	4	0
....................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTGA............................................................................................................	23	1	19.00	19	19	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGC................................................................................................................	18	1	15.00	15	4	1	10	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAG...........................................................................................................	23	1	15.00	15	10	0	5	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGC............................................................................................................	22	1	14.00	14	11	0	3	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGG............................................................................................................	22	1	11.00	11	6	0	5	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTT.............................................................................................................	21	1	9.00	9	8	0	1	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGG............................................................................................................	21	1	8.00	8	8	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAT...........................................................................................................	22	1	7.00	7	7	0	0	0
........................................................................................................................................................................................................................................................TGCACATTCACCGGCCTGA............................................................................................................	19	1	7.00	7	7	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAC..........................................................................................................	24	1	6.00	6	1	1	4	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGT...................................................................................................................................................	22	1	6.00	6	5	0	1	0
.........................................................................................................................................................................................................................................................GCACATTCACCGGCCTGA............................................................................................................	18	1	6.00	6	5	0	1	0
...............................................................................................................................................................................................................GGACGGTATATGAGTCAATGTT..................................................................................................................................................	22	1	6.00	6	6	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCC...............................................................................................................	19	1	5.00	5	3	1	1	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAT.........................................................................................................	25	1	5.00	5	0	1	4	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGT............................................................................................................	21	1	4.00	4	3	1	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAA.........................................................................................................	24	1	4.00	4	4	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTTT............................................................................................................	22	1	4.00	4	4	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAC...........................................................................................................	22	1	3.00	3	3	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGTT...........................................................................................................	23	1	3.00	3	1	2	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGATT..........................................................................................................	24	1	3.00	3	1	0	1	1
.............................................................................................................................................................................................................TCGGACGGTATATGAGTCAATG....................................................................................................................................................	22	1	2.00	2	0	0	2	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTC.............................................................................................................	21	1	2.00	2	1	0	1	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAT........................................................................................................	26	1	2.00	2	0	1	0	1
.......................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTG.............................................................................................................	19	1	2.00	2	1	0	1	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGTTAA................................................................................................................................................	25	1	2.00	2	1	0	1	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGTTA.................................................................................................................................................	24	1	2.00	2	1	0	1	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTA.............................................................................................................	21	1	2.00	2	2	0	0	0
.......................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGAT...........................................................................................................	21	1	2.00	2	2	0	0	0
.............................................................................................................................................................................................................TCGGACGGTATATGAGTCAATGT...................................................................................................................................................	23	1	2.00	2	1	0	1	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGTTT.................................................................................................................................................	24	1	2.00	2	2	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAG..........................................................................................................	24	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCG..............................................................................................................	20	1	1.00	1	0	0	0	1
...............................................................................................................................................................................................................GGACGGTATATGAGTCAATGTTT.................................................................................................................................................	23	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAG.........................................................................................................	25	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCGA.............................................................................................................	21	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGAA...........................................................................................................	21	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................TCGGACGGTATATGAGTCAATGTAA.................................................................................................................................................	25	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGTTTT................................................................................................................................................	25	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTGAAA..........................................................................................................	25	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................................................................AATATATTGCACATTCACCGG.................................................................................................................	21	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................................................TGCACATTCACCGGCCTGAA...........................................................................................................	20	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTTC............................................................................................................	21	1	1.00	1	1	0	0	0

droSim2

AAA--GT-------AATTAGT---TTTT-------T--------------------------------------------------TCCT----------------------------TGCAATAGGCGGCA-------------AG---ACAG-----------------------TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGAGTCAATATTTTTTTTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGA---------AAAA--------------------GAAA-AAAAAAGTGCTT-GCAA-----AA--ACATAAACATTTGCAGGACGGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGA............................................................................................................	22	1	1148603.00	1148603	118	1798	27667	1188	328	12	308029	289998	347534	161798	1518	5438	1512	1664	0	0	1
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAA...........................................................................................................	23	1	134585.00	134585	4	231	2272	235	62	1	34610	30756	45331	20393	49	321	131	189	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATT..................................................................................................................................................	23	1	39166.00	39166	0	47	318	91	223	8	9704	8391	9519	5555	3499	81	556	1174	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAA..........................................................................................................	24	1	19190.00	19190	1	64	1528	455	53	3	1410	1123	8105	6090	50	69	173	66	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTG.............................................................................................................	21	1	11653.00	11653	17	764	3068	129	100	1	859	905	1486	903	125	644	300	2351	0	1	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATAT...................................................................................................................................................	22	1	9917.00	9917	0	14	95	10	570	11	1023	946	2239	1875	350	23	171	2590	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGA............................................................................................................	21	1	9758.00	9758	1	12	148	78	17	1	2720	2258	2808	1546	59	73	15	22	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGG............................................................................................................	22	1	7660.00	7660	25	451	6819	0	0	0	57	59	163	63	3	19	0	1	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAA.........................................................................................................	25	1	4575.00	4575	0	3	77	112	4	0	500	383	2035	1410	9	7	26	9	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATTAAA...............................................................................................................................................	26	1	4150.00	4150	0	0	9	10	0	0	625	568	1924	943	45	2	19	5	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATTAA................................................................................................................................................	25	1	3366.00	3366	0	0	5	0	0	0	357	399	1562	937	71	6	16	13	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATA....................................................................................................................................................	21	1	2729.00	2729	0	1	6	0	209	2	57	48	119	112	120	3	53	1999	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAA...........................................................................................................	22	1	2573.00	2573	0	7	70	10	7	0	600	502	895	469	6	6	1	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCC...............................................................................................................	19	1	2293.00	2293	7	151	1702	0	298	8	15	19	36	28	21	0	0	8	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA........................................................................................................	26	1	1729.00	1729	0	0	4	35	0	0	223	236	819	396	3	0	9	4	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAT...........................................................................................................	23	1	1389.00	1389	4	87	285	9	0	0	178	122	400	221	6	15	12	50	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCT..............................................................................................................	20	1	1297.00	1297	0	16	24	4	184	6	155	153	285	139	25	18	14	255	0	4	15
....................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTGA............................................................................................................	23	1	1258.00	1258	0	0	5	4	0	0	391	369	319	148	1	1	12	8	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATTA.................................................................................................................................................	24	1	1040.00	1040	0	0	10	0	0	0	137	139	314	179	227	11	7	16	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGT............................................................................................................	22	1	1006.00	1006	1	141	75	3	0	0	51	59	91	72	10	42	16	445	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGC............................................................................................................	22	1	898.00	898	1	15	26	0	0	0	31	28	505	263	2	27	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAAT.....................................................................................................................................................	20	1	796.00	796	0	2	10	1	51	2	14	6	20	19	87	0	17	567	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAA..........................................................................................................	23	1	427.00	427	0	2	40	32	2	0	39	18	157	121	11	0	4	1	0	0	0
...................................................................................................................................................................................................................................................TATATTGCACATTCACCGGCCTGA............................................................................................................	24	1	376.00	376	0	1	5	0	0	0	115	125	82	46	0	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAC...........................................................................................................	23	1	367.00	367	0	31	131	2	0	0	24	31	89	49	1	4	3	2	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGT.........................................................................................................................................................	16	1	349.00	349	0	0	0	0	0	0	5	4	5	13	322	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGA............................................................................................................	20	1	321.00	321	0	0	3	5	0	0	65	116	91	37	3	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGC................................................................................................................	18	1	317.00	317	1	6	96	0	79	1	28	14	43	24	24	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................GCACATTCACCGGCCTGA............................................................................................................	18	1	290.00	290	0	1	34	2	0	0	16	25	90	79	40	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAC..........................................................................................................	24	1	283.00	283	0	4	142	1	0	0	14	17	75	29	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAT..........................................................................................................	24	1	280.00	280	0	3	13	1	0	0	59	63	90	36	0	10	0	5	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATAA...................................................................................................................................................	22	1	212.00	212	0	0	0	0	0	0	3	3	14	9	4	0	2	177	0	0	0
....................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTGAA...........................................................................................................	24	1	207.00	207	0	2	2	0	0	0	35	27	97	35	0	0	3	6	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTC........................................................................................................................................................	17	1	205.00	205	0	0	0	0	0	0	3	5	1	4	192	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCA.......................................................................................................................................................	18	1	202.00	202	0	1	0	0	71	2	7	3	11	8	98	0	0	1	0	0	0
.............................................................................................................................................................................................................TCGGACGGTATATGAGTCAATAT...................................................................................................................................................	23	1	189.00	189	0	0	1	0	5	0	32	39	37	55	15	0	1	4	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAA......................................................................................................................................................	19	1	188.00	188	0	1	2	0	101	6	6	3	4	4	11	0	0	50	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATT....................................................................................................................................................	21	1	167.00	167	0	0	0	0	0	0	0	0	0	0	1	0	2	164	0	0	0
...........................................................................................................................................................................................................................................................ACATTCACCGGCCTGA............................................................................................................	16	1	152.00	152	0	0	0	0	0	0	11	17	55	20	49	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATATGAGTCAATATT..................................................................................................................................................	22	1	151.00	151	0	0	0	10	0	0	37	29	36	10	28	0	0	1	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATAAA................................................................................................................................................	25	1	150.00	150	0	0	0	1	0	0	18	10	82	33	6	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAG...........................................................................................................	23	1	149.00	149	0	4	34	4	0	0	22	21	33	21	3	5	0	2	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATAA.................................................................................................................................................	24	1	129.00	129	0	1	1	3	0	0	16	12	48	26	12	1	0	9	0	0	0
............................................................................................................................................................................................................................................................CATTCACCGGCCTGA............................................................................................................	15	1	119.00	119	0	0	0	0	0	0	21	37	30	23	8	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TGCACATTCACCGGCCTGA............................................................................................................	19	1	118.00	118	0	0	3	1	0	0	15	32	39	18	7	3	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTG.............................................................................................................	20	1	113.00	113	1	11	30	5	2	0	5	7	4	8	4	11	1	24	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAA.........................................................................................................	24	1	108.00	108	0	0	5	9	0	0	22	5	44	21	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAT...........................................................................................................	22	1	106.00	106	0	3	13	2	0	0	13	12	38	22	0	1	0	2	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATTT.................................................................................................................................................	24	1	104.00	104	0	1	0	0	10	0	17	8	21	16	5	1	1	24	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAG..........................................................................................................	24	1	90.00	90	0	1	23	1	0	0	11	7	28	14	0	3	2	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATA..................................................................................................................................................	23	1	88.00	88	0	0	2	5	0	0	12	8	9	5	8	0	13	26	0	0	0
....................................................................................................................................................................................................................GTATATGAGTCAATATT..................................................................................................................................................	17	1	86.00	86	0	0	0	0	0	0	0	0	0	0	86	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTT.............................................................................................................	21	1	85.00	85	0	3	44	0	0	0	0	0	0	0	0	1	0	37	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGATT..........................................................................................................	24	1	84.00	84	0	5	7	0	0	0	19	19	19	7	1	1	1	5	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGG.................................................................................................................	17	1	75.00	75	0	0	0	0	0	0	24	23	11	10	6	0	0	1	0	0	0
...................................................................................................................................................................................................................................................TATATTGCACATTCACCGGCCTGAA...........................................................................................................	25	1	71.00	71	0	0	0	0	0	0	23	17	21	10	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CACATTCACCGGCCTGA............................................................................................................	17	1	71.00	71	0	0	0	0	0	0	13	8	34	14	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAC.........................................................................................................	25	1	69.00	69	0	0	14	0	0	0	10	7	22	16	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGTT...........................................................................................................	23	1	62.00	62	0	31	0	0	0	0	2	2	2	2	0	0	0	23	0	0	0
.......................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGAA...........................................................................................................	21	1	59.00	59	0	0	0	2	0	0	12	18	19	8	0	0	0	0	0	0	0
......................................................................................................................................................................................................................ATATGAGTCAATATT..................................................................................................................................................	15	1	57.00	57	0	0	0	0	0	0	1	0	0	0	56	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAAA........................................................................................................	25	1	51.00	51	0	0	0	4	0	0	8	7	23	9	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATTTAA...............................................................................................................................................	26	1	48.00	48	0	0	0	0	0	0	9	6	22	10	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAT.........................................................................................................	25	1	48.00	48	0	0	3	3	0	0	5	5	18	12	0	1	0	1	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGG............................................................................................................	21	1	46.00	46	0	3	33	0	0	0	3	1	2	1	1	2	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATTTAAA..............................................................................................................................................	27	1	45.00	45	0	0	0	0	0	0	10	8	16	11	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCTGA.............................................................................................................	21	5	35.40	177	0	0	1	0	0	0	54	50	46	25	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCC...............................................................................................................	18	1	34.00	34	0	2	11	0	16	1	1	0	0	0	3	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATAAA..................................................................................................................................................	23	1	32.00	32	0	0	0	0	0	0	2	1	12	7	1	0	0	9	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCGA.............................................................................................................	21	1	31.00	31	0	0	0	0	0	0	5	5	14	7	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTGAAA..........................................................................................................	25	1	30.00	30	0	0	1	0	0	0	5	3	11	8	0	0	0	2	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAG..........................................................................................................................................................	15	1	30.00	30	0	0	0	0	0	0	1	5	4	3	17	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATATGAGTCAATAT...................................................................................................................................................	21	1	30.00	30	0	0	0	0	0	0	2	3	7	8	5	0	1	4	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCT..............................................................................................................	19	1	29.00	29	0	0	0	0	15	0	0	0	5	2	7	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTA.............................................................................................................	21	1	29.00	29	0	0	0	1	0	0	7	7	2	4	0	0	2	6	0	0	0
.....................................................................................................................................................................................................................TATATGAGTCAATATT..................................................................................................................................................	16	1	26.00	26	0	0	0	0	0	0	2	0	1	0	23	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTG.............................................................................................................	22	1	25.00	25	0	0	2	0	0	0	0	3	7	2	0	0	1	10	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCG..................................................................................................................	16	1	23.00	23	0	0	0	0	0	0	3	0	0	3	17	0	0	0	0	0	0
...................................................................................................................................................................................................................GGTATATGAGTCAATATT..................................................................................................................................................	18	1	22.00	22	0	0	0	0	0	0	1	0	0	0	21	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAT..........................................................................................................	23	1	21.00	21	0	0	0	0	0	0	7	7	4	2	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAAA.....................................................................................................................................................	20	1	21.00	21	0	0	0	0	0	0	1	0	1	1	1	0	1	16	0	0	0
............................................................................................................................................................................................................................................................CATTCACCGGCCTGAA...........................................................................................................	16	1	20.00	20	0	0	0	0	0	0	4	2	12	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GCACATTCACCGGCCTGAA...........................................................................................................	19	1	19.00	19	0	0	1	0	0	0	0	3	8	4	3	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAG.........................................................................................................	25	1	18.00	18	0	0	1	0	0	0	3	4	7	2	1	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATATGAGTCAATATTAA................................................................................................................................................	24	1	18.00	18	0	0	0	1	0	0	3	0	9	4	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GCACATTCACCGGCCTGAAA..........................................................................................................	20	1	18.00	18	0	0	1	0	0	0	0	0	8	8	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATC..................................................................................................................................................	23	1	17.00	17	0	0	1	0	0	0	5	1	1	1	7	0	1	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATATGAGTCAATATTAAA...............................................................................................................................................	25	1	17.00	17	0	0	0	2	0	0	4	1	5	5	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATATTC.................................................................................................................................................	24	1	17.00	17	0	0	1	0	0	0	1	2	6	3	4	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGT............................................................................................................	21	1	17.00	17	0	3	1	0	0	0	1	0	0	1	0	0	0	11	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTTG............................................................................................................	22	1	16.00	16	0	0	15	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................ATTCACCGGCCTGAA...........................................................................................................	15	1	15.00	15	0	0	0	0	0	0	2	2	6	1	4	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TATATTGCACATTCACCGGCCTG.............................................................................................................	23	1	15.00	15	0	0	7	0	0	0	1	5	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTTT............................................................................................................	22	1	14.00	14	0	1	1	1	0	0	1	0	0	1	0	0	0	9	0	0	0
.............................................................................................................................................................................................................TCGGACGGTATATGAGTCAATA....................................................................................................................................................	22	1	14.00	14	0	0	0	0	2	0	2	4	1	3	0	0	0	2	0	0	0
....................................................................................................................................................................................................................GTATATGAGTCAATAT...................................................................................................................................................	16	1	14.00	14	0	0	0	0	0	0	0	0	3	0	11	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TGCACATTCACCGGCCTGAA...........................................................................................................	20	1	13.00	13	0	0	0	0	0	0	2	1	8	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACATTCACCGGCCTGAA...........................................................................................................	17	1	13.00	13	0	0	0	0	0	0	3	1	8	1	0	0	0	0	0	0	0

dm3

GCAAAGTA-------ATTAGT---TTTGTTGTGTTTTTAAAC--------------------------------------------TCCT----------------------------TGCAATAGGCGGCA-------------AG---ACGG-----------------------TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCAT--TTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGA---------AAAG--------------------TGAA-AAAAAAGTGTTT-GCGA-----AA--ACATAAACATTTGCAGGGCGGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGA............................................................................................................	22	1	534179.00	534179	1	0	3	0	7	36	150	176	39	7	0	42	2	0	0	1	0	0	0	0	0	170	800	18	1628	0	1	0	1	3	0	0	0	0	0	42	821	963	1660	585	995	87	712	1268	787	210	1283	193	1071	1267	1359	2171	1368	391	0	0	0	212	207	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	1	3	2	2046	934	974	720	3192	6	2	7	3	34	25	4	366	34	1258	91	5	0	46	36	89	18	13	4	16	345	508	24	440	311	557	35	15	1328	0	2	17	0	0	0	1	2	6	0	3	1	16	3	8	6	13	22	636	1143	930	592	1446	4	173	1040	1523	1799	942	659	956	881	579	651	97	838	1100	1610	1004	0	0	0	0	0	0	0	0	0	0	0	12	22	0	19	0	1	23	30	1	8	4	2	0	5	0	0	0	4	0	0	93	854	1371	636	645	61	2	14	301	47	210	1155	2	5	2	5	8	673	632	5	5	9	4	17	0	1	0	0	1079	2183	178	209	40365	21261	27208	35097	48615	34962	47298	65416	19	0	0	19	0	1	0	0	144	94	0	1246	1	2	7	1	6	32	0	1	356	2	184	0	2	76	26	0	0	2	0	0	0	0	77	1	2	643	160	4	0	1	6420	14158	4299	10536	7652	24270	9533	30969	0	0	192	1	3	0	0	0	1	3511	80	18	58	7	27	5104	8899	1879	3949	44	64	15	11	0	3	374	2812	4829	15	13	12	349	0	0	586	88	5	0	1	4	1	23	600	3721	1057	1095	6	12	21	28	3	15
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTG.............................................................................................................	21	1	36352.00	36352	0	0	1	0	1	3	20	15	2	5	0	11	0	0	0	0	0	0	0	0	0	24	75	9	723	0	0	1	0	0	0	0	0	0	0	128	54	59	129	83	72	13	99	164	39	73	41	9	52	95	69	151	61	35	0	0	0	11	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	196	61	70	60	348	1	0	1	1	5	1	1	149	3	92	42	1	0	13	23	22	7	1	1	5	30	60	7	32	81	54	5	0	236	0	0	1	0	0	0	3	1	1	0	4	0	2	2	5	3	51	61	20	44	38	41	119	3	33	149	138	185	119	102	48	101	36	68	22	81	93	150	85	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	0	0	0	7	0	1	0	0	0	0	0	0	0	0	0	0	2	301	159	205	54	0	0	0	119	0	48	29	0	1	0	1	1	51	57	0	2	2	3	0	0	0	0	0	109	264	45	124	1253	3288	1513	2082	1643	2989	1725	4261	0	0	0	2	1	0	0	0	8	24	0	74	0	1	1	1	2	32	0	0	39	0	72	0	0	6	2	0	0	0	0	0	0	0	14	0	0	82	14	0	0	0	418	990	272	708	418	1390	357	1124	0	0	12	0	0	0	0	0	0	303	16	4	1	0	9	271	517	213	584	15	25	7	4	0	0	24	240	338	1	2	0	25	0	0	62	15	0	0	0	1	0	19	139	1026	92	224	0	0	5	2	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAA...........................................................................................................	23	1	29931.00	29931	1	0	0	0	0	4	17	34	11	1	0	16	1	0	0	0	0	0	0	0	0	4	21	1	681	0	0	0	0	1	0	0	0	0	0	5	47	25	65	15	31	3	17	5	26	8	62	2	47	41	13	9	32	11	0	0	0	49	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	354	161	148	128	373	0	0	2	1	7	4	0	98	3	73	50	0	0	8	15	16	6	0	0	6	39	49	5	26	104	84	3	1	175	0	0	1	0	0	0	0	0	0	0	0	0	2	1	2	1	1	2	87	135	71	42	133	3	7	99	83	103	29	24	13	33	11	27	7	41	14	46	17	0	0	0	0	0	0	0	0	0	0	0	2	7	0	1	0	0	3	9	2	6	1	0	0	1	0	0	0	0	0	0	14	191	47	109	19	0	0	2	82	6	58	34	2	0	0	1	0	36	49	0	1	0	0	0	0	0	0	0	9	13	4	0	2046	1294	2140	1442	3059	2390	2371	3557	0	0	0	2	57	6	0	0	6	10	0	20	0	0	0	0	0	4	0	0	20	0	3	0	0	1	2	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0	417	1029	233	539	394	1330	271	817	0	0	0	0	0	0	0	0	0	450	6	2	0	0	7	53	98	58	119	8	0	7	4	0	0	11	103	195	0	0	0	1	0	0	3	1	0	0	0	0	0	9	32	131	48	65	0	0	0	0	0	1
..............................................................................................................................................................................................................CGGACGGTATATGGGTTAATATT..................................................................................................................................................	23	1	24229.00	24229	0	0	1	0	0	0	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0	26	28	3	2	0	0	0	0	0	0	0	0	0	0	4	45	28	54	12	46	31	86	53	161	16	109	37	134	127	68	78	184	85	0	0	0	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57	18	27	8	47	0	0	0	0	1	0	0	8	0	17	1	0	0	0	0	0	1	2	0	2	9	3	0	4	3	4	1	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	2	92	282	123	64	215	0	384	160	10	281	308	234	190	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	34	77	97	188	38	12	2	14	20	83	50	0	0	1	0	0	138	174	4	1	12	6	5	0	2	0	0	254	161	30	41	47	7	20	11	36	15	32	16	0	0	0	0	0	0	0	0	4	5	0	56	0	0	1	0	0	0	0	0	10	0	0	0	0	9	2	0	0	0	0	0	0	0	5	0	0	58	12	0	0	0	203	953	2	4	361	2113	369	2115	0	0	43	0	1	0	0	0	0	799	30	5	10	2	20	1020	2908	3	5	5	36	10	16	0	0	440	1804	3608	1	6	1	134	1	0	477	57	3	1	2	9	1	6	132	190	330	177	9	0	1	1	0	7
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAA..........................................................................................................	24	1	12976.00	12976	0	0	0	0	2	1	9	8	1	1	0	7	0	0	0	0	0	0	0	0	0	2	14	1	7	0	0	0	0	0	0	0	0	0	0	7	20	10	43	9	9	0	26	13	6	6	26	0	5	7	8	12	4	2	0	0	0	14	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	210	192	53	51	221	1	0	0	0	3	3	1	31	5	55	22	0	0	0	5	2	4	0	0	2	9	21	2	21	27	36	2	1	73	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	1	1	0	61	101	30	18	35	0	3	45	70	36	16	22	9	41	1	25	3	3	4	11	6	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	6	0	2	0	0	0	0	0	0	0	0	0	0	2	107	58	49	15	0	0	0	40	2	8	10	0	1	0	0	2	35	60	0	0	0	0	0	0	0	0	0	7	4	2	0	760	587	813	390	879	2038	951	2327	0	0	0	0	2	0	0	0	0	1	0	6	0	0	0	0	0	1	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	146	360	58	118	122	425	22	107	0	0	1	0	0	0	0	0	0	109	1	1	0	0	9	26	62	23	49	6	0	1	1	0	0	7	38	108	0	0	0	0	0	0	0	0	0	0	0	0	0	1	20	47	11	27	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAT...........................................................................................................	23	1	6609.00	6609	0	0	0	0	0	0	2	3	3	1	0	3	0	0	0	0	0	0	0	0	0	0	7	0	138	0	0	0	0	0	0	0	0	0	0	0	3	6	8	1	9	1	5	5	4	4	11	2	5	10	9	6	7	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	27	36	57	30	23	0	0	0	0	2	0	0	15	0	11	2	0	0	2	1	0	2	0	1	0	2	6	1	2	21	14	1	1	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	8	20	16	5	13	0	3	20	29	45	6	6	15	11	4	2	1	2	14	6	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	7	85	23	39	1	0	0	0	35	3	16	0	1	1	0	0	0	5	4	0	0	0	0	0	0	0	0	0	5	31	1	2	407	385	363	441	616	661	615	806	1	0	0	0	0	1	0	0	1	1	0	4	0	0	0	0	0	1	0	0	4	0	1	0	0	1	0	0	0	0	0	0	0	0	2	0	0	5	1	1	0	0	61	124	40	111	73	319	81	298	0	0	2	0	1	0	0	0	0	48	1	0	0	0	0	11	14	7	17	1	1	0	0	0	0	0	6	25	0	0	1	2	0	0	4	0	0	0	0	1	0	2	1	10	1	2	0	0	0	0	0	0
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..............................................................................................................................................................................................................CGGACGGTATATGGGTTAATAT...................................................................................................................................................	22	1	3189.00	3189	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	3	5	3	7	0	0	0	0	0	0	0	0	0	1	7	3	2	4	1	5	3	8	2	12	3	11	4	10	13	11	7	18	8	0	0	0	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	7	2	16	0	0	1	0	0	0	0	9	1	2	2	0	0	0	0	0	0	0	0	1	0	6	0	0	7	0	1	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	21	36	24	2	18	0	31	24	1	23	21	12	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	11	78	28	3	1	0	11	2	56	8	1	0	0	0	0	23	32	0	0	2	0	0	0	0	0	0	14	24	10	17	1	0	2	1	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	3	0	0	0	32	112	0	0	43	280	43	253	0	0	21	0	0	0	0	0	0	195	9	3	1	0	8	75	218	0	1	0	3	10	10	0	0	134	196	367	0	2	1	27	0	0	148	6	1	0	0	2	0	5	17	30	52	34	1	0	0	0	0	0
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.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGC............................................................................................................	22	1	2156.00	2156	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	4	0	2	1	0	0	0	0	0	0	0	0	0	1	5	20	8	18	16	2	29	150	7	4	9	6	5	227	116	112	3	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	4	9	6	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	2	0	0	0	0	0	4	1	0	0	0	2	0	7	0	0	2	0	0	0	0	0	0	0	0	1	3	0	0	0	0	1	9	15	20	8	30	0	0	7	11	4	7	6	4	10	0	5	1	10	8	13	22	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	2	2	0	0	0	1	0	1	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	2	1	0	1	26	28	16	31	20	19	38	73	0	0	0	0	0	0	0	0	0	1	0	8	0	2	0	0	0	0	0	0	3	0	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	12	94	7	47	11	167	22	207	0	0	1	0	0	0	0	0	0	13	0	0	0	0	0	159	17	69	11	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAA...........................................................................................................	22	1	1910.00	1910	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	3	0	0	1	1	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	10	3	7	5	0	0	0	0	0	0	0	2	0	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	6	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	2	3	0	0	0	3	10	0	2	1	1	0	0	0	2	1	3	4	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	1	5	0	0	0	0	0	0	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	1	1	0	1	135	44	83	80	215	92	131	127	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	19	177	16	93	28	201	36	187	0	0	1	0	0	0	0	0	0	12	0	0	0	0	0	5	19	1	5	0	0	0	0	0	0	7	8	9	0	0	1	3	0	0	5	0	0	0	0	0	0	0	0	2	1	2	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA........................................................................................................	26	1	528.00	528	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	1	1	0	1	0	2	2	0	2	0	0	2	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	1	0	1	0	0	0	1	0	1	2	0	0	0	0	0	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	22	16	39	17	31	151	22	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	20	0	3	14	26	0	5	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	1	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	3	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAT..........................................................................................................	24	1	429.00	429	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	2	8	1	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	1	3	0	1	12	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	3	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	52	2	30	0	0	0	0	23	0	14	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	17	18	15	5	22	24	17	34	0	0	0	0	45	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	2	1	9	4	4	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	1	3	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGGGTTAATATTAA................................................................................................................................................	25	1	426.00	426	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	1	0	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	3	8	1	9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	18	2	0	2	0	3	1	0	1	9	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	12	2	0	0	1	1	2	0	0	0	0	0	0	2	10	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	12	0	0	4	19	0	6	0	0	0	0	0	0	0	0	0	68	1	0	0	0	2	7	28	0	0	0	0	0	0	0	0	14	33	76	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	6	14	10	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTG.............................................................................................................	20	1	363.00	363	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	3	0	0	0	0	0	0	0	0	2	6	0	1	0	2	1	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	11	30	11	18	18	28	7	33	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	31	5	21	1	35	2	22	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	9	0	3	0	0	0	0	0	0	5	1	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGGGTTAAT.....................................................................................................................................................	20	1	273.00	273	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	14	0	0	2	0	0	0	2	0	0	0	0	1	0	1	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	3	0	0	1	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	4	14	2	1	0	0	11	0	4	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	4	2	7	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	11	0	0	0	0	1	7	0	0	3	13	1	8	0	0	2	0	0	0	0	0	0	10	0	1	0	0	0	5	13	0	0	1	1	5	6	0	0	19	11	12	0	0	0	2	0	0	9	0	0	0	0	0	0	0	1	4	4	1	0	0	0	0	0	0
...............................................................................................................................................................................................................GGACGGTATATGGGTTAATATT..................................................................................................................................................	22	1	264.00	264	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	3	0	3	0	4	2	1	6	1	0	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	6	0	4	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	3	0	3	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	15	0	0	4	23	2	13	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	8	33	0	1	0	1	0	1	0	0	6	16	46	0	0	0	2	0	0	8	0	0	0	0	0	0	0	2	3	2	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGATT..........................................................................................................	24	1	182.00	182	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	2	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	10	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	10	0	3	0	0	0	0	3	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	15	19	14	10	10	15	14	16	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	3	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................CGGACGGTATATGGGTTAATAA...................................................................................................................................................	22	1	91.00	91	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	1	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	10	5	0	0	0	1	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	4	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	2	1	0	0	1	0	1	3	0	0	4	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	1	0	0	0	0	0	0
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..............................................................................................................................................................................................................CGGACGGTATATGGGTTAATATAAA................................................................................................................................................	25	1	84.00	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	4	0	2	0	0	0	0	1	0	0	0	6	10	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	2	7	0	0	0	0	0	0
..............................................................................................................................................................................................................CGGACGGTATATGGGTTA.......................................................................................................................................................	18	1	76.00	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	10	0	0	0	0	1	0	8	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	2	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	3	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	1	0	0	1	0	0	19	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAC.........................................................................................................	25	1	29.00	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	0	4	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCC...............................................................................................................	18	1	28.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	8	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGC............................................................................................................	21	1	28.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

GAAAACTAAG---TGT---------------TAATTT--------------------------------------TTTGTTA---ATAGTTGTA--GTTTTCGGCTTATAAAG-TTCCAGCAGAA--TAAAT--AA---ATAGTT--GGGAGAG-----------------------AACAGAGTTGAAATTCCTAAATA-TTTTTAGGCCTGTGTCTGT-TCAATATAATTA--TTTAAAAATATATTGCACACTCACCGGCCTGAAAAGATTAGGGATATTCTTTAA---------AAAG--------------------------------TGAGT-GCAC-----GT--ACACAAACATTTGCAGGTGGGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAAAACTAGCAGTCGAC--------CAGCTTTATTTTGCAGGCCGAGGTGGGTGGCAATGCGATGCT-----TTC---TTCCCGTA---TTGCACTTGCCCCGGCCTATAAAC-TCG-AGCAAGAAGCGTAA-AAA---T-----------CGG------------TTTAAA---------------TGGTTCCGAGATAGTTTTTCGGACGGTGTTTGTGACAATATTTTAG---GTTTAAAAATATTGCACATTCACCGGCCTCTAAACATCAAGGGCATTCCTCAA---------AAAG--------------------------------CGCCT-GCAA-----AT--ACACAAGCATTTGCAGGCCGGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATAGTGA-------------AACTTTGCTGTAATTTACATGTCGCGGGCGGTGACAATGCGAGTTAT-----G-TTTATTACGTA---TTGCACTGGCCCCGGCCTATAAAC-TTC-GGCTATAAACAGCAAAAA---A-----------TAA------------TTCAAA--------------TTAATTCCAAGATAGTTTTTCGGACGGTGTCTGCGTCAATATTTCAG--TTTTAAAACATATTGCACATTCACCGGCCTGAAAATATCAAGGGTGTTCCTCAA---------AAAG--------------------------------TTCCT-GCAA-ATACAC--ACACACACATTTGCAGGCTGGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAATATTT-------------AATTCGGCATTAATTTATATGTCGCTGGCGGTGACAATACGAGCATT-----T-AATTTTACGTA---TTGCACTGGCCCCGGCTAATAGAA-TTCTGCCAGAAAACGACAAA-AAAAAAAGAA--GGG----------------TTTGAT-------------C-TAAGACCTAGATTCTTTTTCGGACGGTATCTGCGACAATATGCGAA---CTTTTAACATATTGCACATTTACCGGCCTGAAATTATCATGGATATTCATCAAGATATTTTAAAAG--------------------------------CTTTT-GCAA-----T-GTACACAAACATTTGCAGGCGGGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAAAGTT-------------ATTTTTGCATTAATTTATATGTCGCTGGCGGTGACAATACAAGTTGTTGGTTTT---TTTTCGTA---TTGCACTGGCCCCGGCTTATAAAA-TCCTGGCATTAAACGGCGAA-A---A-------GTG----------------TTCAAA-------------C-TAAGTCCTAGGTTGTTTTTCGGACGGTATTTGTGACAATATGCTTA--ATTTTAGACATATTGCACATTTACCGGCCTGAAATTAACATGGATATTCTTCGA--TATTTGTAAAG--------------------------------TTCCTGGC-A-----GTACACACAAACATTTGTAGGCGGGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAGACCCAA------------------------AATTCTGAGCCGTGGACAGTGATAATGCGATTTT------TA---TTTGCGTA---TTGCACTGGTCCCGGCCTATAAAA-TT--GGCGTAGAACGACGAA-A---A-------GAG-TGTTTTTTTATTTTTTT---------------TTATTTGTTTCCGGACAGTTGTTTGGACGGAAGATGCGCCAGTATGCGGA--TTTTTAAGCATATTGCACATTTACCGGCCTAGTAATGCACTGGCTATTCATCAA---------TTAT---------------------------------TTAT-GCAA-----ATGCACAAAAACATTTGCAGGCGGGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCAGACACTGGTCAGGACGGGATCTGTGTCAATACGTGAT---TTTGATTCATATTGCACACATACCGGCCTGATAATGTCTGGGCTATTCGTCAG---------ATAGTGTACGCTTTAGTTTTCAGTGAAAGTAAAAGGTGTCG-G----ACGAAT--GCACGAACATTTGCAGTCTGGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAAAAGT-------GTTTAG-AACTTCGATTTTATTTGTAGGTCGCGGAAGGTTGCAATGCGTATTT-------T---GAATCGTA---TTGCACTTTCCCCGGCCCATAGATATTA-TACGAACAGCA------------------GCG----------------ATCGCTATCTGAGAGAAATATTTGTTGCCAGATTATCTTCAGGACGGTATTTGTGTCAATATGGATA---TTTCAAACATATTGCACTTATACCGGCCTGATGATCTCCGGCG--CTCGTCAT-----CTG-TGAC--------------------T------AAAAGTGCGA-A-AATAGCAAA--ACATAAACACTTGCAGGACGGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGA............................................................................................................	22	1	104879.00	104879	12507	89224	3069	29	31	19
....................................................................................TA---TTGCACTTTCCCCGGCCCAT..........................................................................................................................................................................................................................................................................	22	1	34173.00	34173	2456	30922	783	2	1	9
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGAA...........................................................................................................	23	1	13773.00	13773	1049	12489	232	1	0	2
....................................................................................TA---TTGCACTTTCCCCGGCCCA...........................................................................................................................................................................................................................................................................	21	1	10436.00	10436	1083	8865	473	6	1	8
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGAAA..........................................................................................................	24	1	8865.00	8865	1007	7771	87	0	0	0
....................................................................................TA---TTGCACTTTCCCCGGCCC............................................................................................................................................................................................................................................................................	20	1	8113.00	8113	385	7553	172	0	0	3
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCC...............................................................................................................	19	1	8002.00	8002	9	7984	9	0	0	0
....................................................................................TA---TTGCACTTTCCCCGGCCCAC..........................................................................................................................................................................................................................................................................	22	1	6649.00	6649	11	6633	4	0	1	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTG.............................................................................................................	21	1	6004.00	6004	1265	4440	280	5	8	6
......................................TAGGTCGCGGAAGGTTGCAATGC..........................................................................................................................................................................................................................................................................................................................	23	1	2768.00	2768	240	1905	485	6	112	20
....................................................................................TA---TTGCACTTTCCCCGGCCCATA.........................................................................................................................................................................................................................................................................	23	1	2401.00	2401	301	2016	81	1	0	2
......................................TAGGTCGCGGAAGGTTGCAATG...........................................................................................................................................................................................................................................................................................................................	22	1	2067.00	2067	183	1421	422	5	31	5
....................................................................................TA---TTGCACTTTCCCCGGCC.............................................................................................................................................................................................................................................................................	19	1	1665.00	1665	169	1422	66	7	0	1
....................................................................................TA---TTGCACTTTCCCCGGCCCATT.........................................................................................................................................................................................................................................................................	23	1	1574.00	1574	147	1378	45	1	0	3
.......................................AGGTCGCGGAAGGTTGCAATGC..........................................................................................................................................................................................................................................................................................................................	22	1	1374.00	1374	97	362	393	20	415	87
....................................................................................TA---TTGCACTTTCCCCGGCCCAA..........................................................................................................................................................................................................................................................................	22	1	1369.00	1369	297	1045	26	0	0	1
......................................................................................................................................................................................................................................................ATTGCACTTATACCGGCCTGA............................................................................................................	21	1	1128.00	1128	785	338	5	0	0	0
......................................TAGGTCGCGGAAGGTTGCAAT............................................................................................................................................................................................................................................................................................................................	21	1	826.00	826	24	508	259	2	29	4
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCT..............................................................................................................	20	1	775.00	775	152	585	37	0	0	1
.....................................................................................A---TTGCACTTTCCCCGGCCCAT..........................................................................................................................................................................................................................................................................	21	1	633.00	633	153	478	2	0	0	0
....................................................................................TA---TTGCACTTTCCCCGGCCA............................................................................................................................................................................................................................................................................	20	1	608.00	608	133	432	43	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGAT...........................................................................................................	23	1	560.00	560	54	493	7	0	5	1
..............................................................................................................................................................................................................AGGACGGTATTTGTGTCAATATG..................................................................................................................................................	23	1	527.00	527	176	260	52	2	31	6
....................................................................................TA---TTGCACTTTCCCCGGCCCATAA........................................................................................................................................................................................................................................................................	24	1	499.00	499	61	428	10	0	0	0
......................................TAGGTCGCGGAAGGTTGCAATGCAA........................................................................................................................................................................................................................................................................................................................	25	1	468.00	468	37	223	208	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGC............................................................................................................	22	1	365.00	365	14	312	39	0	0	0
......................................TAGGTCGCGGAAGGTTGCAATGCA.........................................................................................................................................................................................................................................................................................................................	24	1	358.00	358	29	219	109	0	1	0
.......................................AGGTCGCGGAAGGTTGCAATGCG.........................................................................................................................................................................................................................................................................................................................	23	1	355.00	355	156	42	30	8	110	9
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGT............................................................................................................	22	1	355.00	355	51	270	30	2	2	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGAC...........................................................................................................	23	1	312.00	312	9	302	1	0	0	0
......................................TAGGTCGCGGAAGGTTGCAA.............................................................................................................................................................................................................................................................................................................................	20	1	251.00	251	24	125	62	4	33	3
..............................................................................................................................................................................................................AGGACGGTATTTGTGTCAATAT...................................................................................................................................................	22	1	205.00	205	18	172	12	0	3	0
....................................................................................TA---TTGCACTTTCCCCGGCCCATC.........................................................................................................................................................................................................................................................................	23	1	174.00	174	3	171	0	0	0	0
.......................................AGGTCGCGGAAGGTTGCAATG...........................................................................................................................................................................................................................................................................................................................	21	1	169.00	169	43	50	15	5	52	4
.....................................................................................A---TTGCACTTTCCCCGGCCCA...........................................................................................................................................................................................................................................................................	20	1	168.00	168	50	117	1	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCC..............................................................................................................	20	1	159.00	159	1	157	1	0	0	0
......................................................................................................................................................................................................................................................ATTGCACTTATACCGGCCTGAA...........................................................................................................	22	1	147.00	147	64	81	2	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGAG...........................................................................................................	23	1	146.00	146	20	121	3	0	1	1
....................................................................................TA---TTGCACTTTCCCCGGCCT............................................................................................................................................................................................................................................................................	20	1	137.00	137	15	115	7	0	0	0
......................................................................................................................................................................................................................................................ATTGCACTTATACCGGCCTGAAA..........................................................................................................	23	1	122.00	122	65	57	0	0	0	0
.......................................................................................................................................................................................................................................................TTGCACTTATACCGGCCTGA............................................................................................................	20	1	117.00	117	36	81	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGAAT..........................................................................................................	24	1	114.00	114	6	108	0	0	0	0
......................................TAGGTCGCGGAAGGTTGCAATGA..........................................................................................................................................................................................................................................................................................................................	23	1	105.00	105	4	83	16	1	1	0
.........................................................................................TTGCACTTTCCCCGGCCCAT..........................................................................................................................................................................................................................................................................	20	1	103.00	103	11	91	1	0	0	0
.....................................................................................A---TTGCACTTTCCCCGGCCCAC..........................................................................................................................................................................................................................................................................	21	1	102.00	102	1	101	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGG............................................................................................................	22	1	98.00	98	32	59	7	0	0	0
......................................TAGGTCGCGGAAGGTTGCAATA...........................................................................................................................................................................................................................................................................................................................	22	1	96.00	96	7	54	34	0	1	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGAAC..........................................................................................................	24	1	92.00	92	8	79	5	0	0	0
.....................................................................................A---TTGCACTTTCCCCGGCCC............................................................................................................................................................................................................................................................................	19	1	89.00	89	21	67	1	0	0	0
....................................................................................TA---TTGCACTTTCCCCGGCCCATTT........................................................................................................................................................................................................................................................................	24	1	88.00	88	7	79	2	0	0	0
......................................................................................................................................................................................................................................................ATTGCACTTATACCGGCCTG.............................................................................................................	20	1	83.00	83	69	13	1	0	0	0
.....................................................................................A---TTGCACTTTCCCCGGCCCATA.........................................................................................................................................................................................................................................................................	22	1	69.00	69	29	37	3	0	0	0
....................................................................................TA---TTGCACTTTCCCCGGCCCT...........................................................................................................................................................................................................................................................................	21	1	68.00	68	7	58	3	0	0	0
....................................................................................TA---TTGCACTTTCCCCGGCCCATG.........................................................................................................................................................................................................................................................................	23	1	62.00	62	5	56	1	0	0	0
......................................TAGGTCGCGGAAGGTTGCAAC............................................................................................................................................................................................................................................................................................................................	21	1	55.00	55	0	54	1	0	0	0
......................................TAGGTCGCGGAAGGTTGCAATGT..........................................................................................................................................................................................................................................................................................................................	23	1	55.00	55	3	39	10	0	3	0
......................................TAGGTCGCGGAAGGTTGCAATT...........................................................................................................................................................................................................................................................................................................................	22	1	55.00	55	0	27	21	0	7	0
.......................................AGGTCGCGGAAGGTTGCAATGCGA........................................................................................................................................................................................................................................................................................................................	24	1	54.00	54	0	2	35	0	17	0
......................................TAGGTCGCGGAAGGTTGCA..............................................................................................................................................................................................................................................................................................................................	19	1	51.00	51	11	16	11	1	11	1
....................................................................................TA---TTGCACTTTCCCCGGC..............................................................................................................................................................................................................................................................................	18	1	49.00	49	7	42	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGCA...........................................................................................................	23	1	47.00	47	1	34	12	0	0	0
......................................TAGGTCGCGGAAGGTTGCAATGCT.........................................................................................................................................................................................................................................................................................................................	24	1	47.00	47	2	38	7	0	0	0
......................................TAGGTCGCGGAAGGTTGCAATAA..........................................................................................................................................................................................................................................................................................................................	23	1	45.00	45	1	23	20	0	1	0
....................................................................................TA---TTGCACTTTCCCCGGCCCATTA........................................................................................................................................................................................................................................................................	24	1	44.00	44	0	43	1	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCA..............................................................................................................	20	1	44.00	44	3	35	6	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGATA..........................................................................................................	24	1	43.00	43	3	37	1	2	0	0
....................................................................................TA---TTGCACTTTCCCCGGCCCATAT........................................................................................................................................................................................................................................................................	24	1	38.00	38	2	36	0	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTA.............................................................................................................	21	1	37.00	37	8	29	0	0	0	0
......................................................................................................................................................................................................................................................ATTGCACTTATACCGGCC...............................................................................................................	18	1	37.00	37	0	37	0	0	0	0
..............................................................................................................................................................................................................AGGACGGTATTTGTGTCAATATA..................................................................................................................................................	23	1	36.00	36	6	25	5	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGC................................................................................................................	18	1	35.00	35	2	26	4	2	1	0
..............................................................................................................................................................................................................AGGACGGTATTTGTGTCAATA....................................................................................................................................................	21	1	35.00	35	4	23	5	0	1	2
......................................TAGGTCGCGGAAGGTTGCAAA............................................................................................................................................................................................................................................................................................................................	21	1	35.00	35	4	18	9	0	4	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGACA..........................................................................................................	24	1	35.00	35	2	30	3	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTT.............................................................................................................	21	1	34.00	34	4	25	5	0	0	0
......................................TAGGTCGCGGAAGGTTGCAATAAA.........................................................................................................................................................................................................................................................................................................................	24	1	33.00	33	3	14	16	0	0	0
....................................................................................TA---TTGCACTTTCCCCGGCCCAG..........................................................................................................................................................................................................................................................................	22	1	33.00	33	11	19	3	0	0	0
......................................TAGGTCGCGGAAGGTTGCAATGAAA........................................................................................................................................................................................................................................................................................................................	25	1	32.00	32	3	21	8	0	0	0
.......................................................................................................................................................................................................................................................TTGCACTTATACCGGCCTGAAA..........................................................................................................	22	1	32.00	32	4	27	1	0	0	0
....................................................................................TA---TTGCACTTTCCCCGGCCCC...........................................................................................................................................................................................................................................................................	21	1	31.00	31	1	19	11	0	0	0
.......................................AGGTCGCGGAAGGTTGCAATT...........................................................................................................................................................................................................................................................................................................................	21	1	30.00	30	1	1	1	0	22	5
......................................TAGGTCGCGGAAGGTTGCAATGCC.........................................................................................................................................................................................................................................................................................................................	24	1	29.00	29	0	27	2	0	0	0
.......................................AGGTCGCGGAAGGTTGCAATGCGT........................................................................................................................................................................................................................................................................................................................	24	1	28.00	28	5	6	4	1	12	0
...............................................................................................................................................................................................................GGACGGTATTTGTGTCAATATG..................................................................................................................................................	22	1	28.00	28	27	1	0	0	0	0
.....................................................................................A---TTGCACTTTCCCCGGCCCAA..........................................................................................................................................................................................................................................................................	21	1	27.00	27	12	14	1	0	0	0
......................................TAGGTCGCGGAAGGTTGCAATGAA.........................................................................................................................................................................................................................................................................................................................	24	1	26.00	26	1	16	9	0	0	0
.......................................................................................................................................................................................................................................................TTGCACTTATACCGGCCTGAA...........................................................................................................	21	1	26.00	26	5	20	1	0	0	0
.....................................................................................................................................................................................................................................................TATTGCACTTATACCGGCCTGTA...........................................................................................................	23	1	25.00	25	4	10	11	0	0	0
.....................................................................................A---TTGCACTTTCCCCGGCCCATT.........................................................................................................................................................................................................................................................................	22	1	23.00	23	6	17	0	0	0	0
.........................................................................................TTGCACTTTCCCCGGCCCAC..........................................................................................................................................................................................................................................................................	20	1	22.00	22	0	22	0	0	0	0
........................................................................................................................................................................................................................................................TGCACTTATACCGGCCTGA............................................................................................................	19	1	22.00	22	8	14	0	0	0	0
.....................................................................................A---TTGCACTTTCCCCGGCC.............................................................................................................................................................................................................................................................................	18	1	22.00	22	7	15	0	0	0	0

droBip1

AGAAGTTAGCAAGTGATTAT-GATTTCGATTTTATTTGTAGGTTGTGGAAGGTTGCAAAGCGTATTT-------T---TAATCGTA---TTGCACTTTCCCCAGCCCATAGATATTA-TGCGAATAGCA------------------GCG----------------TCCGGTATGTGAGTGAAATATTTGTGGCCAGATACCCTTTAGGTCGGTATTTGTGACAATATGATA----TTTCAATCATATTGCACTTGTACCGGCCTGATAATATCTGGCA--TTCGTCAT-----CTG-TGAG--------------------TCTG-TGAAAAGTGCGC-GAAATATCAAA--ACATAAACACTTGCAGGACGGG	Size	Hit Count	Total Norm	Total
No Reads

der-mir-311c

scaffold_4845:10618008-10618087 -

Known

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.6	-17.4	-17.3