ID:

der-mir-3

 Coordinate:

scaffold_4845:9749344-9749412 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

pre_miRNA [Dere\mir-3-RM]; utr3 [utr3_minus_3619]; miRNA [Dere\miR-3-RA]; pre_miRNA [Dere\mir-309-RM]; utr3 [utr3_minus_3620]; miRNA [Dere\miR-309-RA]

No Repeatable elements found

Sense Strand Reads

CCTATAATCCCGAAACGACGACCAGCCAATTGTGAACCCACCAAGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCGACGCAACTACAAATCAACAACAAATGCAGAGTAAGTGT

******************************************..((((..((((.((((((((((.((((.((((.((((.........)))).)))).)))).)))))))))).))))..))))....**************************************** 		Read size # Mismatch Hit Count Total Norm Total V040

embryo

 M055

female body

 M057

embryo

 V108

head

 V107

male body		 V060

head
............................................................................................TCACTGGGCAAAGTGTGTCTCA....................................................... 22 0 1 4885.00 4885 3308 1163 327 52 29 6
............................................................................................TCACTGGGCAAAGTGTGTCTC........................................................ 21 0 1 329.00 329 87 55 180 5 2 0
.............................................................................................CACTGGGCAAAGTGTGTCTCA....................................................... 21 0 1 93.00 93 4 89 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCT......................................................... 20 0 1 77.00 77 30 13 31 1 2 0
............................................................................................TCACTGGGCAAAGTGTGTCTCAA...................................................... 23 0 1 40.00 40 17 20 3 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCC....................................................... 22 1 1 29.00 29 26 0 2 0 0 1
............................................................................................TCACTGGGCAAAGCGTGTCTCA....................................................... 22 1 1 22.00 22 22 0 0 0 0 0
............................................................................................TCACTTGGCAAAGTGTGTCTCA....................................................... 22 1 1 22.00 22 15 1 4 2 0 0
............................................................................................TCACTGGGCAAAGTGTTTCTCA....................................................... 22 1 1 21.00 21 16 5 0 0 0 0
............................................................................................TCACTGGGCAAATTGTGTCTCA....................................................... 22 1 1 21.00 21 18 3 0 0 0 0
............................................................................................TCACTGGGCACAGTGTGTCTCA....................................................... 22 1 1 20.00 20 14 4 2 0 0 0
............................................................................................TCACTGGGCAAAGTGCGTCTCA....................................................... 22 1 1 18.00 18 15 1 1 1 0 0
............................................................................................TCACTGGGCAAAGTTTGTCTCA....................................................... 22 1 1 18.00 18 8 10 0 0 0 0
............................................................................................TCACTGGGCAAAGGGTGTCTCA....................................................... 22 1 1 18.00 18 11 7 0 0 0 0
..............................................................................................ACTGGGCAAAGTGTGTCTCA....................................................... 20 0 1 18.00 18 14 4 0 0 0 0
......................................CACCAAGGTCCTGATCCTG................................................................................................................ 19 0 1 18.00 18 9 8 1 0 0 0
............................................................................................TCACTGGTCAAAGTGTGTCTCA....................................................... 22 1 1 16.00 16 14 2 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCT....................................................... 22 1 1 16.00 16 9 1 5 0 1 0
............................................................................................TCACTGTGCAAAGTGTGTCTCA....................................................... 22 1 1 15.00 15 15 0 0 0 0 0
............................................................................................TGACTGGGCAAAGTGTGTCTCA....................................................... 22 1 1 13.00 13 0 2 11 0 0 0
............................................................................................TCACTGGGCAAAGTGTGGCTCA....................................................... 22 1 1 13.00 13 11 0 2 0 0 0
............................................................................................TCATTGGGCAAAGTGTGTCTCA....................................................... 22 1 1 12.00 12 2 0 10 0 0 0
............................................................................................TCACTGGGCAAAGAGTGTCTCA....................................................... 22 1 1 12.00 12 10 2 0 0 0 0
............................................................................................TCACTGGGCAAACTGTGTCTCA....................................................... 22 1 1 12.00 12 11 1 0 0 0 0
............................................................................................TCACCGGGCAAAGTGTGTCTCA....................................................... 22 1 1 11.00 11 4 4 2 1 0 0
............................................................................................TCACTGGGCAAAGTGGGTCTCA....................................................... 22 1 1 11.00 11 6 4 1 0 0 0
............................................................................................TCACTGGGCGAAGTGTGTCTCA....................................................... 22 1 1 11.00 11 10 1 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCAT...................................................... 23 1 1 10.00 10 2 3 5 0 0 0
............................................................................................TCACTGCGCAAAGTGTGTCTCA....................................................... 22 1 1 10.00 10 10 0 0 0 0 0
............................................................................................CCACTGGGCAAAGTGTGTCTCA....................................................... 22 1 1 10.00 10 9 0 1 0 0 0
............................................................................................TCACTGGGCAAAGTGTCTCTCA....................................................... 22 1 1 10.00 10 7 3 0 0 0 0
............................................................................................TCACTGGGCAAAGTCTGTCTCA....................................................... 22 1 1 9.00 9 6 3 0 0 0 0
............................................................................................TGACTGGGCAAAGTGTGTCTC........................................................ 21 1 1 9.00 9 0 0 9 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCG....................................................... 22 1 1 9.00 9 8 1 0 0 0 0
.....................................CCACCAAGGTCCTGATCCTG................................................................................................................ 20 0 1 9.00 9 2 6 1 0 0 0
............................................................................................TCACTGGGAAAAGTGTGTCTCA....................................................... 22 1 1 9.00 9 6 3 0 0 0 0
............................................................................................TCACTCGGCAAAGTGTGTCTCA....................................................... 22 1 1 9.00 9 8 1 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGCCTCA....................................................... 22 1 1 9.00 9 6 2 1 0 0 0
............................................................................................TCAATGGGCAAAGTGTGTCTCA....................................................... 22 1 1 9.00 9 2 7 0 0 0 0
............................................................................................GCACTGGGCAAAGTGTGTCTCA....................................................... 22 1 1 8.00 8 4 2 2 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCAC...................................................... 23 1 1 8.00 8 5 0 3 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCC......................................................... 20 1 1 8.00 8 0 0 8 0 0 0
............................................................................................TCACTGGGCAAAGTGAGTCTCA....................................................... 22 1 1 7.00 7 5 2 0 0 0 0
............................................................................................TCACTAGGCAAAGTGTGTCTCA....................................................... 22 1 1 7.00 7 7 0 0 0 0 0
.............................................................................................CACTGGGCAAAGTGTGTCTC........................................................ 20 0 1 7.00 7 0 6 1 0 0 0
............................................................................................TCGCTGGGCAAAGTGTGTCTCA....................................................... 22 1 1 7.00 7 5 2 0 0 0 0
............................................................................................TCACTGGGCAACGTGTGTCTCA....................................................... 22 1 1 6.00 6 6 0 0 0 0 0
............................................................................................TTACTGGGCAAAGTGTGTCTCA....................................................... 22 1 1 6.00 6 0 2 4 0 0 0
............................................................................................TCACTGGGCAAGGTGTGTCTCA....................................................... 22 1 1 6.00 6 2 1 0 3 0 0
.........................................................GGATGCATCTTGTGCAGTTATG.......................................................................................... 22 0 1 6.00 6 0 6 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTGTCA....................................................... 22 1 1 6.00 6 6 0 0 0 0 0
............................................................................................TCACTGGACAAAGTGTGTCTCA....................................................... 22 1 1 5.00 5 4 1 0 0 0 0
............................................................................................TCACTGAGCAAAGTGTGTCTCA....................................................... 22 1 1 5.00 5 5 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTATGTCTCA....................................................... 22 1 1 5.00 5 3 2 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCGCA....................................................... 22 1 1 5.00 5 2 3 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTTA....................................................... 22 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................CTCACTGGGCAAAGTGTGTCTCA....................................................... 23 1 1 4.00 4 1 2 1 0 0 0
............................................................................................TCACGGGGCAAAGTGTGTCTCA....................................................... 22 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTTTCTCC....................................................... 22 2 1 4.00 4 2 0 2 0 0 0
............................................................................................TCATTGGGCAAAGTGTGTCTC........................................................ 21 1 1 4.00 4 0 0 4 0 0 0
............................................................................................TCACTGTGCAAAGCGTGTCTCA....................................................... 22 2 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTG........................................................ 21 1 1 4.00 4 0 4 0 0 0 0
............................................................................................TCACTGGCCAAAGTGTGTCTCA....................................................... 22 1 1 4.00 4 3 1 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTATCTCA....................................................... 22 1 1 4.00 4 3 1 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTC.......................................................... 19 0 1 4.00 4 0 1 3 0 0 0
............................................................................................TCACTGGGCCAAGTGTGTCTCA....................................................... 22 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TCACTGGGCACAGTGTGTCTC........................................................ 21 1 1 3.00 3 1 0 2 0 0 0
............................................................................................TCACTGGGCAGAGTGTGTCTCA....................................................... 22 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................CACTGGGCAAAGTGTGTCT......................................................... 19 0 1 3.00 3 0 3 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTTTCA....................................................... 22 1 1 3.00 3 1 0 2 0 0 0
............................................................................................TCACTGGGTAAAGTGTGTCTCA....................................................... 22 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGCACAGCGTGTCTCA....................................................... 22 2 1 3.00 3 3 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGACTCA....................................................... 22 1 1 3.00 3 1 2 0 0 0 0
............................................................................................TCACTGGGCAATGTGTGTCTCA....................................................... 22 1 1 3.00 3 2 1 0 0 0 0
............................................................................................TCTCTGGGCAAAGTGTGTCTCA....................................................... 22 1 1 3.00 3 2 0 0 1 0 0
............................................................................................TCACTGGGCAAAGAGTGCCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCATAGTGTGTCTCA....................................................... 22 1 1 2.00 2 1 1 0 0 0 0
............................................................................................TCACTGGGCAAACCGTGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................GCACTGGGCAAAGTGTTTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAAGCCAGTCTCA....................................................... 22 3 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCAG...................................................... 23 1 1 2.00 2 0 2 0 0 0 0
............................................................................................TCACTGGGCAAAATGTGTCTCA....................................................... 22 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTATCA....................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................................AGATCCTGGCCACTTCGACG................................... 20 0 1 2.00 2 1 1 0 0 0 0
............................................................................................TCACTGGGCAAAGTGCGTCTC........................................................ 21 1 1 2.00 2 1 1 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTT........................................................ 21 1 1 2.00 2 1 0 0 1 0 0
............................................................................................TCACTGGGCAAAGTGGGTCTC........................................................ 21 1 1 2.00 2 0 0 2 0 0 0
............................................................................................TCACTGGGCACCGTGTGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAAGGGTGTCTC........................................................ 21 1 1 2.00 2 0 1 1 0 0 0
............................................................................................TCACTCGGCAAAGCGTGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGTGCAAAGTTTGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGTCAAAGTGTCTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................CACTGGGCAAAGTGTGTCTCAA...................................................... 22 0 1 2.00 2 0 2 0 0 0 0
............................................................................................TTACTGGGCAAAGTGTGTCTC........................................................ 21 1 1 2.00 2 0 0 2 0 0 0
............................................................................................TCAGTGGGCAAAGTGTGTCTCA....................................................... 22 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAAGCGCGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTAGGCAAAGTGAGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCCCA....................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................CTGGGCAAAGTGTGTCTCA....................................................... 19 0 1 2.00 2 1 1 0 0 0 0
............................................................................................TCACTGGGAAAAGCGTGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAAGAGTATCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................GCACTGGGCAAAGTGTGTCTC........................................................ 21 1 1 2.00 2 0 0 2 0 0 0
............................................................................................TCACTGGGCAAAGGGCGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTCTCTC........................................................ 21 1 1 2.00 2 0 1 1 0 0 0
............................................................................................TCACTGCCCAAAGTGTGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGTGCAAAGTGTGTCTCC....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAAGCCTGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCATTGGGCAAAGTGTGTCT......................................................... 20 1 1 2.00 2 0 0 2 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTGA....................................................... 22 1 1 2.00 2 0 2 0 0 0 0
............................................................................................TCACTGGTCAAATTGCGTCTCA....................................................... 22 3 1 2.00 2 2 0 0 0 0 0
..............................................................................................ACTGGGCAAAGTGTGTCTCAA...................................................... 21 0 1 2.00 2 1 1 0 0 0 0
...................................ACCCACCAAGGTCCTGATCCTG................................................................................................................ 22 0 1 2.00 2 0 1 1 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCAAA..................................................... 24 1 1 2.00 2 0 2 0 0 0 0
............................................................................................TCACTGGTCAAAGAGTGTCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTCTGTCTCC....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGGGCAAATTGTGCCTCA....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.........................................................GGATGCATCTTGTGCAGTTA............................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACTGGGCAAAGTGTTTCTCT....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................ACTGGGCAAAGTGTGTCTC........................................................ 19 0 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCATAGGGTGTCTCT....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACGGGGCAAAGTGGGTCTCG....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACCGGGCAAAGTGTGTCTCC....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCA......................................................... 20 1 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACAGGGCAAAGTGTTTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................CTGGGCAAAGTGCGTCTCA....................................................... 19 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGACCAAATTGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................................AGATCCTGGCCACGTCGACG................................... 20 1 1 1.00 1 0 0 1 0 0 0
............................................................................................TCATTGGGCAAAGAGTGTCTCA....................................................... 22 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACTGGGCAAAGTGGGTATCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGTCACCGTGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACAGGGCAAACTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGAGTGTAT......................................................... 20 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTATAA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACGGAGCAAAGCGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAATTGGGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCCCAGCGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................AAACTGGGCAAAGTGTGTCTC........................................................ 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCTATGTGCGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACAGGGCAAAGTGTGTCTCA....................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGGTCAAAGTGTGTCTCC....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCACAGTGTCTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTAGCCAAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGAAAAGTGTGTCGC........................................................ 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGCGCAAAGTCTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAACCGGGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................CACTAGGCAAAGTGTGTCTCA....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGGACAACGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGCCACAGGGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGCGCAAAGTATGCCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGTTAAATGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TAACTGGGCAAAGTGTGACTCG....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTCGGCAAAGTGCGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGTGCAAAGTGTGTTTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCCCTGGGCAAAGTGTGTCTCC....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACGGGGCACAGTGTGTCTTA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGCCAAAGCGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCCCTGGGCAAAGTGCGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................GGATGAATCTTTGGCAGTTATG.......................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGTGCAAAGTGAGTCTC........................................................ 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCACAGTGTGTCTCC....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCCCTGGGCAACGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGTCAAAGTGTGGCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAATGTGTGTCTCC....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCAATTGGCAAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCAAG..................................................... 24 0 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACTGGGCAAAGTGTTTCTCAA...................................................... 23 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACCGGGCAAAGTGTGTCTTA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGTTCAAAGTGTTTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTTTCTC........................................................ 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTCTGTCTCAC...................................................... 23 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGCCAAAGTGCGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGCCCAAGCGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................CACTGGGCAAAGTGTTTCTCA....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGGCTCT....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................ACTGGGCAAAGTGTGGCTCA....................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGTGCAAAGTGTTTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCGACGCGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGACACAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTCGGCAAAGTGTGTCTC........................................................ 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGACAAAATGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCCAAGTGCGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACGGGGCCACGTGTGTCTC........................................................ 21 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTATGTCTC........................................................ 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTTGGCAAAGAGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCAAAA.................................................... 25 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGGGCAAAGTGTGTCTC........................................................ 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TCAGTGGGCAAAGTGTGTCTCC....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCACAGTGTGTCTCG....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGAGTGTCTCG....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................CACTGGGCAAAGTGTGTCTCAAG..................................................... 23 0 1 1.00 1 0 1 0 0 0 0
............................................................................................TCATTGGGCAAAGTGTTTCTCA....................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGGGCAAAGAGTGGCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCTCTGGGCCAAGTTTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TGACTGGGCAAAGTGTGTCC......................................................... 20 2 2 1.00 2 0 0 2 0 0 0
............................................................................................TCACTGGGCACAGTGGGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................ACTGGGCAAAGTGTGTCTCAAG..................................................... 22 0 1 1.00 1 1 0 0 0 0 0
............................................................................................TGACTGGGCAAAGTGTGTCTCT....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAATTGTGACTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGCGTCTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TAACTGGGCAAAGTGTGTCTCG....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.....................................CCACCAAGGTCCTGATCC.................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACTGGGCAAAGTGCGGCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGACAAAGTCTATCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACCGGGCAAAGTGTTTCTCCA...................................................... 23 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCCACGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGCCAAAGTGAGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTCGGCAAACTGTGCCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTTGGCAAAGTGTCTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTAGGCAAACTGGGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGCCTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTCGTCAAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGTGCAATGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGCGCAAAGTGTGGCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................CTGGGCAAAGTGTGTCTCAAT..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................ACACTGGGCAAAGTGTGTCTCT....................................................... 22 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACTGGGCAAATTGTGTCCC........................................................ 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGTTCAAAGTGTGTCTCC....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGACAAAGTGTTTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCTAAGTGTGTCTC........................................................ 21 1 1 1.00 1 0 0 1 0 0 0
............................................................................................GAACTGGGCAAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCATAGTGTGTCTCT....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGTGCCACGTGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGCCAAAGTGTCTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGTAAAGGGTGTCTCC....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGCGTTTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGCGCAAAGTGTGTCTCC....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTCACCAAAGTGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTCGGCAAAGTGTGTCTCAA...................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGCACAAAGTGTGCCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGACAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCAGTCGGCAAAGTGCGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGAAAAGTGTGTCTCT....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCTACGTGTGGCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTTGGCACAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCACAGTGTGTCTAA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACCGGGCAAAGTTTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGAGCAAAGTGTGTCTC........................................................ 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAACTTTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAATGTCTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGATTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGTCAAAGTTGGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TAAGTGGGCAAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGCCAAAGTGTGTCTCC....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGCGAGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................CACTGGGCAAAGTGTGTCTCAT...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................CCACGCGGCAAAGTGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACCGAGCAAAATGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCACAGTGTGTCC......................................................... 20 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACTGGACAAAATATGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTAGACAAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTTGACAAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TAACTGGTCTAAGTGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGGTTCA....................................................... 22 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACTTGGCAAAGTGTTTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAGAGTGGGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGGAAAGTGTGGCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTCGGCAAAATGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGAACAGTGTGTCTCA....................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGGACAAAGTGTGTCTC........................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................ACTGGGCAACGTGTGTCTCAAG..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGGGGCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTCGGCAAAGTGTATCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAACGTGTGTCTC........................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................ACCGGGCAAAGAGTGTCTCA....................................................... 20 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTAA....................................................... 22 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TCACTGGACAAAGACTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGCCACAGTGTGTCTCA....................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGCGCAAAGTGTGTCGCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTCAGCAAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAGGTGTGTCTAA....................................................... 22 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TCACTGGGCAAAGTGGGACTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCATT..................................................... 24 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACTGGGCCAAGTGGGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCCCAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTACTGGGCACAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTTGGCAAAAAGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAACAGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TGACTGGGCAAAGGGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACGGGGCAAAGTGTCTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAATTTTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACCGGGCAAACAGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGTAAAGTGTTACTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGGAAAGTGTGTCTCA....................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTCTCTT...................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.............................................................................................CACTGGGCAACGTGTGTCTCA....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TGACTGGGCAAAGTGTGTCT......................................................... 20 1 1 1.00 1 0 0 1 0 0 0
............................................................................................TAACTGGGCAAAGTGTGTCGCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCCCTGGGCAAGGTGTGTCTCA....................................................... 22 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TCACTGGACAACATGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGAGCAAAGTATGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGCCAAAGCCTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGAAAAGGGTCTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCGCAGGGCAAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTTTGCAAAGTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGAGCAAACTGTGTCTCA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTTGGCACATTGTGTCTCA....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGTGTGA....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................................AGATCCTGGCCACTTCGAC.................................... 19 0 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACTGGGCAAAGTGTGACTCAA...................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGCAAAGTGTGGCT......................................................... 20 1 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACTGGGCAAAATGTGTCTC........................................................ 21 1 1 1.00 1 0 1 0 0 0 0

Anti-sense strand reads

GGATATTAGGGCTTTGCTGCTGGTCGGTTAACACTTGGGTGGTTCCAGGACTAGGACCCTACGTAGAACACGTCAATACAAAGATAGAGTGTAGTGACCCGTTTCACACAGAGTTCTAGGACCGGTGAAGCTGCGTTGATGTTTAGTTGTTGTTTACGTCTCATTCACA

****************************************..((((..((((.((((((((((.((((.((((.((((.........)))).)))).)))).)))))))))).))))..))))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 V040

embryo
............................................................................TACAATGATGCAGTGTAGTG......................................................................... 20 3 1 1.00 1 1 0
.................................................................................................................................................GTTGTTGTTTCCGGATCATTC... 21 3 5 0.20 1 0 1
.............................................................................ACAATGATGCAGTGTAGTG......................................................................... 19 3 13 0.15 2 2 0
................................................................AGAACACGTCAAAAGAAAGAAA................................................................................... 22 3 7 0.14 1 1 0
.....................................................................................................................................CGGTGATGTTTAGTTGTC.................. 18 2 10 0.10 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4845:9749294-9749462 - der-mir-3 Known_mirbase CCTATAATCCCGAA--A--CGAC---GACCAGCC--A---------------------ATT----------------------GTG---------------AACC-----CAC----C---AAGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCGACGCA------------------A----------------------CTACAAATCA----------ACAAC-AAA--------TG----------CAG----AGT----AAGTGT--
droYak3 2R:13623568-13623746 + dya-mir-3 Known_mirbase CCTATAATCCCGAA--A--CGAC---GACCAGCA--GCC------------------AAGT----------------------GTG---------------AACC-----ATC----A---AAGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTCCA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCGACGCA------------------G----------------------CTACAAATCA----------ACAGT-A-ATGCAAAAGAG----------AAG----AGT----AAGTGT--
droSec2 scaffold_1:13063773-13063945 - dse-mir-3 Known_mirbase CCTATAATCCCGAA--A--CGAC---GACCAGCT--A---------------------ATT----------------------GTG---------------AATC-----ACC----A---AAGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCA------------------A----------------------CTACAAATCA----------AC----A-ATCAAAAAATC----------AAG----AGT----AAGTTA--
droSim2 2r:16196316-16196488 - dsi-mir-3 Known_mirbase CCTATAATCCCGAA--A--CGAC---GACCAGCT--A---------------------ATT----------------------GTG---------------AACC-----ACC----A---AAGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCT------------------A----------------------CTTCAAATCA----------AC----A-ATCCAAAAAGC----------AAG----AGT----AAGTGA--
dm3 chr2R:15549044-15549218 - dme-mir-3 Known_mirbase CCTATAATCCCGAA--A--CGAC---GACCAGCT--A---------------------ATT----------------------GTG---------------AGCC-----ACC----T---AAGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCA------------------A----------------------CTTCAAATCA----------AT--TAA-ATCAAAAAATC----------AAG----AGT----AAGTGA--
droEug1 scf7180000409474:2396679-2396840 + CCTATAATCCCGAT--A--ATAC---AACCAGCT--A---------------------ATA----------------------GTG---------------AATCT----ACC----AAA-ACGGTCCCGATCCTGGGATCCATCTTGTTCAGTTATGTATTTA---------ACT------CACATCACTGGGCAAAGTGTGTCTCAGGATCTTGACCAAATCATCAAG------------------A----------------------CTTTAAAC-----------------------------TG----------AAA----AGT----AAGTGA--
droBia1 scf7180000302143:3059939-3060109 - CCTATAATCTCGAA--A--AGAC---GACCAGCA--A---------------------AGT----------------------GTG---------------AAGC-----ACCC---G---AAGGTCCCGATCCTGGGACGCATCTTGTGCAGTTATGATTCTG---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAGCATCGCA------------------A----------------------CGTAAACTGA----------AAAAT-ACGT-------GC----------CAA----AGT----AAGTGA--
droTak1 scf7180000415384:83867-84027 + CCTATAATCTCGAA--A--AGAC---GACCAGCT--T---------------------ATT----------------------GTG---------------AACC-----AACC---A---AAGGTCTCGATCTTGGGATGCATCTTGTGCAGTTATGATTCTA---------TAT------CTCATCACTGGGCAAAGTGTGTCTCAAGAGTCTGGCCACAA----GC----------------------------------------------------AACCAAAGAAAT----A-AT-------CT----------CAA----AGT----AAGTGA--
droEle1 scf7180000491201:2014115-2014284 - CCTATAATCTCGAA--A--AGAC---GACCATCTCGA---------------------ACA----------------------GTG---------------AATT-----ATCG---A---AAGGCCCCGATCTTGGGATGCATCTTGTGCAGTTATGTTA--A---------CCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCATCGC-------------------------------------------TTC------AACCATACAAA-GCC-A-AT-------AC----------AAA----AGT----AAGTGA--
droRho1 scf7180000780066:73471-73642 + CCTATAATCTTGAA--A--AGAC---GACCAGCT--A---------------------ACT----------------------GTG---------------ATCA-----AAC----A---AAGGCCTCGATATTGGGACGCATCTTGTGCAGTTATGTTTACA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGTCACATCATCGCT------------------A----------------------CTTC------AACCATATAAAT-AC-A-AT-------AC----------AAA----AGT----AAGTGA--
droFic1 scf7180000454039:848158-848325 - CCTATAATCTCGAG--A--AGAC---GACCAGTA--A---------------------AGT----------------------GTT---------------AACT-----ACCA---A---AAGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTT--A---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGACCACATCATCGAA------------------T----------------------CTTC------AAACAAACCAAT----A-AT--------C----------CAA------C----AAGTGAAC
droKik1 scf7180000302679:89502-89683 - CCTATAATCTCAAA--A--CGAC---GACCAGCA--AT--------------------CCA----------------------GTG---------------AACC-----AGC----A---AAGGTCCCGAACTTGGGATGCATTTTGTTCAGTCATGTCAACG--TGA----TAC------TCCATCACTGGGCAAAGTGTGTCTCAAGAACCTGACCACCACGACGGAG-----------------A----------------------CTCCAA--CA----------GC--AGC-ACCAAGAAAGTAAAGTTC---CA-------A----AAGTGA--
droAna3 scaffold_13266:9731173-9731342 + dan-mir-3 Known_mirbase CCTATAATCTATAA--AAAAGCC---GTCCAGAC--A---------------------TCT----------------------GTG---------------AGCC-----CCCA---A---CTGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACCAA---AAATA-TA-------TCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCAACGAA------------------G----------------------AATCAATTCA----------T----------------CA----------AAT----TGT----AAGTGA-T
droBip1 scf7180000396427:874152-874323 + CCTATAATCTCGAA--AATGAAC---GTCCAGAA--A---------------------TCT----------------------GTG---------------AATC-----CTCC---GCTCCGGGTCACGATCTTGGGATGCATTTTGTGCAGTTATGCATCAA---AATCA-T-------AACCATCACTGGGCAAAGTGTGTCTCATGATCTGGGCCAACTCAACAAAG-----------------A-----------------------ATCCAGTC-------------------A--------TC----------AAA----TGT----AAGTGG-T
dp5 3:12677707-12677896 - dps-mir-3 Known_mirbase CTTATAATCCCACA--G--TAAGCGA--TCAGCG--A-------GCGTCTCAGCGCACATT----------------------GTG---------------AACG-----ACGATACC---GAGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAG------------------T-------G---------------TAC------AAGAATGGCG--------A--------TA----------AAG----TGT----GTGTGT--
droPer2 scaffold_2:8905770-8905959 + dpe-mir-3 Known_mirbase CTTATAATCCCACA--G--TAAGCGA--TCAGCG--A-------GCGTCTCAGCGCACATT----------------------GTG---------------AACG-----ACGATACC---GAGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAG------------------T-------G---------------TAC------AAGAATGGCG--------A--------TA----------AAG----TGT----GTGTGT--
droWil2 scf2_1100000004514:1651877-1652085 - dwi-mir-3 Known_mirbase CTTATAATCTTTAA--A--CTAC---AATCAAAA--TACAATTGGAGTGTTAAAAAAAAAG----------------------GAG---------------AGTA-----ATCGAATT---TAGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT------CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAAC------------------C----------------------CAAAAAGTTA----------GC----C-AACCAAAC--T----------TAGTGAGTGA----CTATGC--
droVir3 scaffold_12875:4111875-4112087 + dvi-mir-3 Known_mirbase CGTATAATCGCAAA--A--AGA------ACAGCA--A---------------------AAAAAAATAAAAATAAAACAATATTAT--TAAATAAAAAT----ACC-----AGAATCTC---ATAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTGCC---------TCC--AAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACCAGAGAAAATAACGCAG---CTCAGATATTCCAGTG------------------------------------------T--------TT----------CAG----TGT--GACAGTGT--
droMoj3 scaffold_6496:20936921-20937126 - dmo-mir-3 Known_mirbase CGTATAATCGA--AACG--AAAC---AGCAAGGA--A-A-----AAGTC----------CA----------------------GTC---------------AATTCAACGGAACTCTC---GCAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAACGA---------TTG--GAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACAAAGGAGG-AGTGTTTCAG---TTCCAGTGTTTCACTATCAGTGTTTC------ACTT--------------------------------------------T----CAGTGT--
droGri2 scaffold_5621:2593-2788 + dgr-mir-3-2 Known_mirbase CGTATAATC--GAA--A--TG-----GATCAGCT--A---------------------AAA----------------------GTTGTACATAAAAATGCTTGCC-----AAATTTTC---ATAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACT----------CTTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTAAAGAAAA------------------T-------A---------------ATA------TAAAATGGCA--------A--------TT------TTTGCAG----TGTTTTGCAGTGTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
CCTATAATCCCGAA--A--CGAC---GACCAGCC--A---------------------ATT----------------------GTG---------------AACC-----CAC----C---AAGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCGACGCA------------------A----------------------CTACAAATCA----------ACAAC-AAA--------TG----------CAG----AGT----AAGTGT--SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2214885.00488511633276330829520
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................211329.0032955180087250
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................21193.009389004000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................20177.00771331030210
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................23140.0040203017000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................22129.002902126000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................20118.001840014000
..............................................................................................................CAC----C---AAGGTCCTGATCCTG..............................................................................................................................................................................................................19118.00188109000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................22116.00161509100
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................23110.00103502000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................2219.0091008000
........................................................................................................C-----CAC----C---AAGGTCCTGATCCTG..............................................................................................................................................................................................................2019.0096102000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.....................................................................................................................................2318.0080305000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCC........................................................................................................................................2018.0080800000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................2017.0076100000
........................................................................................................................................GGATGCATCTTGTGCAGTTATG........................................................................................................................................................................................2216.0066000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTG.......................................................................................................................................2114.0044000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................1914.0041300000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCT........................................................................................................................................1913.0033000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.....................................................................................................................................2312.0022000000
................................................................................................................................................................................................................AGATCCTGGCCACTTCGACG..................................................................................................................2012.0021001000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT.......................................................................................................................................2112.0020001010
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2212.0022000000
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCA......................................................................................................................................1912.0021001000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2112.0021001000
......................................................................................................ACC-----CAC----C---AAGGTCCTGATCCTG..............................................................................................................................................................................................................2212.0021100000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2412.0022000000
........................................................................................................................................GGATGCATCTTGTGCAGTTA..........................................................................................................................................................................................2011.0010100000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTC.......................................................................................................................................1911.0010001000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCA........................................................................................................................................2011.0010100000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG....................................................................................................................................2411.0010100000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAAG....................................................................................................................................2311.0011000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG....................................................................................................................................2211.0010001000
........................................................................................................C-----CAC----C---AAGGTCCTGATCC................................................................................................................................................................................................................1811.0010100000
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCAAT....................................................................................................................................2111.0011000000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................2211.0011000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT....................................................................................................................................2411.0010100000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT.....................................................................................................................................2311.0010100000
................................................................................................................................................................................................................AGATCCTGGCCACTTCGAC...................................................................................................................1911.0010100000
droYak3
CCTATAATCCCGAA--A--CGAC---GACCAGCA--GCC------------------AAGT----------------------GTG---------------AACC-----ATC----A---AAGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTCCA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCGACGCA------------------G----------------------CTACAAATCA----------ACAGT-A-ATGCAAAAGAG----------AAG----AGT----AAGTGT--SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................22119463.00194630339095102502347150000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................2113579.0035795833042572300000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................201410.0041000378302000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCC........................................................................................................................................201149.001490014900000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................221126.001260075480300000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................231120.001200077430000000
........................................................................................................................................GGATGCATCTTGTGCAGTCATG........................................................................................................................................................................................221114.001140069450000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................221103.001030086160100000
..............................................................................................................ATC----A---AAGGTCCTGATCCTG..............................................................................................................................................................................................................19181.00810060210000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................20176.00760010660000000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................21157.00570619320000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.....................................................................................................................................23148.0048004530000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................23147.0047004160000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................19141.0041003830000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................22130.0030006240000000
........................................................................................................C-----ATC----A---AAGGTCCTGATCCTG..............................................................................................................................................................................................................20126.0026002330000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT....................................................................................................................................24117.0017001700000000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................22116.001600790000000
.......................................................................................................................................GGGATGCATCTTGTGCAGTCATG........................................................................................................................................................................................23115.0015001230000000
................................................................................................................................................................................................................AGATCTTGGCCACTTCGAC...................................................................................................................19114.0014001220000000
.....................................................................................................................................CTGGGATGCATCTTGTGCAGTC...........................................................................................................................................................................................22112.001200480000000
.......................................................................................................CC-----ATC----A---AAGGTCCTGATCCTG..............................................................................................................................................................................................................21111.0011001010000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2419.00900630000000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................2017.00701600000000
...............................................................................................................TC----A---AAGGTCCTGATCCTG..............................................................................................................................................................................................................1816.00600330000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.....................................................................................................................................2316.00600420000000
........................................................................................................................................GGATGCATCTTGTGCAGTC...........................................................................................................................................................................................1915.00500410000000
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCA......................................................................................................................................1914.00400220000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC....................................................................................................................................2414.00400400000000
......................................................................................................ACC-----ATC----A---AAGGTCCTGATCCTG..............................................................................................................................................................................................................2214.00400400000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2114.00400130000000
................................................................................................................................................................................................................AGATCTTGGCCACTTCGACGC.................................................................................................................2114.00400400000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTC.......................................................................................................................................1913.00300120000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2213.00300210000000
.......................................................................................................................................GGGATGCATCTTGTGCAGTC...........................................................................................................................................................................................2013.00300300000000
........................................................................................................................................GGATGCATCTTGTGCAGTCAT.........................................................................................................................................................................................2113.00300210000000
.......................................................................................................................................GGGATGCATCTTGTGCAGTCA..........................................................................................................................................................................................2113.00300210000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC......................................................................................................................................2212.00200020000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCT......................................................................................................................................2012.00200110000000
................................................................................................................................................................................................................AGATCTTGGCCACTTCGACGCA------------------G----------------------.......................................................................2312.00200200000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT....................................................................................................................................2412.00200200000000
.....................................................................................................AACC-----ATC----A---AAGGTCCTGATCCTG..............................................................................................................................................................................................................2312.00200200000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGT..........................................................................................................................................1812.00200110000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA....................................................................................................................................2412.00200110000000
................................................................................................................................................................................................................AGATCTTGGCCACTTCGACG..................................................................................................................2012.00200200000000
................................................................................................................................................................................................................AGATCTTGGCCACTTCGACA..................................................................................................................2012.00200200000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT...................................................................................................................................2512.00200200000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACC....................................................................................................................................2412.00200200000000
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTC.......................................................................................................................................1812.00200200000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT.....................................................................................................................................2312.00200200000000
..............................................................................................................................................................................................TGGGCAAAGTGTGTCTCA......................................................................................................................................1811.00100010000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATAC...................................................................................................................................2511.00100100000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC.....................................................................................................................................2311.00100100000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTGT......................................................................................................................................2211.00100010000000
.......................................................................................................CC-----ATC----A---AAGGTCCTGATCCT...............................................................................................................................................................................................................2011.00100100000000
droSec2
CCTATAATCCCGAA--A--CGAC---GACCAGCT--A---------------------ATT----------------------GTG---------------AATC-----ACC----A---AAGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCA------------------A----------------------CTACAAATCA----------AC----A-ATCAAAAAATC----------AAG----AGT----AAGTTA--SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................22126152.002615235748237012046
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................2111658.001658294159431
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................201434.004345041910
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................201188.001882017313
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................23178.007840704
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................21163.0063290304
..............................................................................................................ACC----A---AAGGTCCCGATCCTG..............................................................................................................................................................................................................19149.004950440
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................23135.003500350
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGT..........................................................................................................................................18131.003100301
........................................................................................................................................GGATGCATCTTGTGCAGTTATG........................................................................................................................................................................................22129.002900290
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................22128.002800280
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................19124.002401221
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................22123.002300203
........................................................................................................C-----ACC----A---AAGGTCCCGATCCTG..............................................................................................................................................................................................................20118.001820142
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................22116.001610150
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTC.......................................................................................................................................19115.001500150
...............................................................................................................CC----A---AAGGTCCCGATCCTG..............................................................................................................................................................................................................18111.001110100
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.....................................................................................................................................23110.00100091
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCA......................................................................................................................................1916.0060060
..............................................................................................................................................................................................TGGGCAAAGTGTGTCTCA......................................................................................................................................1816.0060060
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2415.0051031
.........................................................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2315.0052030
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2115.0050050
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT....................................................................................................................................2414.0040040
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT.......................................................................................................................................2114.0040040
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................2014.0044000
................................................................................................................................................................................................................AGATCCTGGCCACATCGTCG..................................................................................................................2013.0030030
.......................................................................................................................................GGGATGCATCTTGTGCAGTTATG........................................................................................................................................................................................2312.0020020
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCT........................................................................................................................................1812.0021010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACA....................................................................................................................................2412.0020020
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCCA.......................................................................................................................................2112.0020020
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCA........................................................................................................................................2012.0020020
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAACC...................................................................................................................................2512.0020020
.........................................................................................................................................................................................ATCACTGGGCAAAGTGTGTCT........................................................................................................................................2112.0020020
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2212.0020020
.......................................................................................................TC-----ACC----A---AAGGTCCCGATCCTG..............................................................................................................................................................................................................2112.0020020
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................2111.0010010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT....................................................................................................................................2411.0010010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAT......................................................................................................................................2211.0010010
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCT........................................................................................................................................1911.0010010
.......................................................................................................................................GGGATGCATCTTGTGCAGTTAT.........................................................................................................................................................................................2211.0010010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT....................................................................................................................................2411.0010010
......................................................................................................ATC-----ACC----A---AAGGTCCCGATCCTG..............................................................................................................................................................................................................2211.0010001
.....................................................................................................AATC-----ACC----A---AAGGTCCCGATCCTG..............................................................................................................................................................................................................2311.0010010
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG....................................................................................................................................2211.0010010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT.....................................................................................................................................2311.0010010
................................................................................................................................................................................................................AGATCCTGGCCACATCGT....................................................................................................................1811.0010010
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................2211.0010010
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2211.0010010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAC...................................................................................................................................2511.0010010
.........................................................................................................................................................................................ATCACTGGGCAAAGTGTGTCTC.......................................................................................................................................2211.0010010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA....................................................................................................................................2411.0010010
droSim2
CCTATAATCCCGAA--A--CGAC---GACCAGCT--A---------------------ATT----------------------GTG---------------AACC-----ACC----A---AAGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCT------------------A----------------------CTTCAAATCA----------AC----A-ATCCAAAAAGC----------AAG----AGT----AAGTGA--SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................22134191.003419160507210612158144211128425774200000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................2112151.002151239156730011157214217301000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................231527.005270010016123826501500000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................201215.00215006010037010822500000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................20177.007700100000161404600000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................22141.0041000000003203600000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................22140.00401016000002301800000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................22131.0031001000002102700000
..............................................................................................................ACC----A---AAGGTCCCGATCCTG..............................................................................................................................................................................................................19129.00290016000000001300000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................21120.002000110000650700000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................22115.001500000000590100000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................19114.001400001000760000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................24114.0014000000001040000000
........................................................................................................C-----ACC----A---AAGGTCCCGATCCTG..............................................................................................................................................................................................................20113.001300900000000400000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................23110.001000200000520001000
........................................................................................................................................GGATGCATCTTGTGCAGTTATG........................................................................................................................................................................................2219.00900000000100800000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2219.00900000000360000000
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCA......................................................................................................................................1918.00800200000130200000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTG...........................................................................................................................................1717.00700000000142000000
...............................................................................................................CC----A---AAGGTCCCGATCCTG..............................................................................................................................................................................................................1815.00500500000000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2115.00500000000410000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.....................................................................................................................................2314.00400100000100200000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................2014.00401300000000000000
................................................................................................................................................................................................................AGATCCTGGCCACATCGTCGC.................................................................................................................2113.00300300000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT....................................................................................................................................2413.00300000000000102000
..............................................................................................................................................................................................TGGGCAAAGTGTGTCTCA......................................................................................................................................1813.00300000000201000000
.........................................................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2313.00300000000210000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTA.......................................................................................................................................2112.00200000000000200000
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCAAGA...................................................................................................................................2212.00200000000200000000
...........................................................................................................................................TGCATCTTGTGCAGTTATGTTC.....................................................................................................................................................................................2212.00200000000110000000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2312.00200000000110000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT...................................................................................................................................2512.00200000000000002000
.................................................................................................................................................................................................GCAAAGTGTGTCTCA......................................................................................................................................1521.50300000000210000000
................................................................................................................................................................................................................AGATCCTGGCCACATCGTCG..................................................................................................................2011.00100100000000000000
......................................................................................................ACC-----ACC----A---AAGGTCCCGATCCTG..............................................................................................................................................................................................................2211.00100000000000100000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG....................................................................................................................................2411.00100000000100000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTTT......................................................................................................................................2211.00100000000000100000
.........................................................................................................................................................................................ATCACTGGGCAAAGTGTGTCTC.......................................................................................................................................2211.00100100000000000000
...........................................................................................................................................TGCATCTTGTGCAGTTATGTTT.....................................................................................................................................................................................2211.00100000000010000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCT........................................................................................................................................1811.00100000000100000000
................................................................................................................................................................................................................AGATCCTGGCCACATCGTCGCT------------------..............................................................................................2211.00100100000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTTG......................................................................................................................................2211.00100000000000100000
dm3
CCTATAATCCCGAA--A--CGAC---GACCAGCT--A---------------------ATT----------------------GTG---------------AGCC-----ACC----T---AAGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCA------------------A----------------------CTTCAAATCA----------AT--TAA-ATCAAAAAATC----------AAG----AGT----AAGTGA--SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2211109209.001109209000060431180437422110000000033283020130411251055934828207775138719176412695202001000000000000000000002102248678858606657869457105113478212488872219434029283213502133331146071015929552111103018260701811000031440088122137463126036617675369405421829100119465183210000012180316751620191012511258113016395224714152615921012956107000001127361221001437116545124610951033913566557132012000016584180491179251145131100353111022165710316582013790176921632795351025415973118132499344652561144152715622161122546513749212550181347412589103127392139133418942913488527535511717984124979362234929740
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................20152059.0052059000000019293000100000000220000100000466440203000130510000250100010000000000000000000000001876546634943310001002222110008478600018290780300001010100100000000004184164811421116700033000000000305160490200400111050004103701000090100000030008000480041801410030017200000001852290112121140001003210010400542911111000112244424344127310700160020122050505245401626123013263401302030110
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................21128441.0028441000000810242000000001000153001000000072110030018023010015020000000000000000000000000000102745578610711990102060051332051105563433500483821580700002100301300000011001919253527898557567010311211000000350180670400300002000000201100100010320000010000200013086483883124829228910250000640739001000001021123410101001262171003516412600423722412260147032803323113126481331251333162524236211631137040
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................20117909.001790900000002000000000000000000000000003972110101201000120020000000000000000000000000000287691200000000000100000000400001010000000000000000000000000143131452669976589101400150000000001000000000000000000000000011000010000000000000000003110000002517000000001381320000000100100002000001000100002010010521000001000863445017000110100000120470101210202110780002010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2316909.0069090000201628810000000000002000101000003911011000010010030100020000000000000000000010007031861529522910010200100000011000223550009431800000000000000000000000003618029141091180000100000000000000022000000101000000000021010001000000009100000000011016180542460690000000010796000000010000000100000000000010000310002500000000023077001015040000002210300100100002000251000010
........................................................................................................................................GGATGCATCTTGTGCAGTTATG........................................................................................................................................................................................2214675.004675000000266601000000000000000000000000590000000000000000000000000000000000000000000000141798428969000000000000022500103187193000111351600000000000000000000000001282505364690000000000000000000000000000000000000000000000000000000000000000000000000000001060000000029130000000000000000000001000000000000000000100000000262300000000000000020000000001100000000010000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................2213589.003589000000000000000000000010000000000000001000601000312000000000000000000000000000000171510649000000000000000100001300031020210000000102200000000002042634731142840101000000000000000021000000000001000000000000000000000000000000000000000000010100000000685900010000001000001100000000000000000000100000000002197500100001110000000010010000000001040000010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................2212003.00200300000015000000000000002000000000001000000000000000002000000000000000000000000000069215327170010030000000003000011200020010000000100000010000000000236451372101970000010000000000000020000000000000000000010010000000000000000000000000010100011020000000047300000000000000000100000000000000000000001000001000484100000001100000100011000010000011010100000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACTG...................................................................................................................................2511844.001844000000000000000000000000000000000018390000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................2311758.00175800000018800000000000000100000000009000100000100000000000000000000000000000000000081171017914000000011000000000000800032012300000000000000000000000092248274305000000000000000000000000000000010010000000000000000000000000000000000110003010440210000000046340000000000000000000010000000000010000000000000000561300000000000000000000000000000000030000000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................2111525.00152500000025200000000000000000000000006000000000000000000000000000000000000000000000079415622290000000000000001000003000120020000000000000000000000007911210730000001000000000000010000000000000000000000000000000000000000000000000000001200040300000000181800000000000000001000000000000000000001000000000008607001000100001020000000000201000000120000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................2211316.001316000000616200000000000000000000000000000000000000000000000000000000000000000000000080208142000000000000000000010080002310600100000000000000000000043827539310000000000000000000011000000000000000000000000000000000000000000000000000000000000000000282910000000001000001000000000001000001000000000001007774001000000000001100010000000001000160000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................191965.009650000000000000000000000000000000000219000000000300000000000000000000000000000000000013411156000000000000000002000300051080000000000000000000000001761131073019000100000000000000000000000000000100001000010000000000000000010000000010000003011000000029330000000000000000000000000000000000000000000000000176600000000000000000000000000000000010001000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.....................................................................................................................................231889.0088900000012100000000000000000000000002100000000000000000000000000000000000000000000004714192370000000000000001000010000150070000000000000000000000005212716032000000000000000000000000000000000000000000000000000000000000000000000000000110114041000000014190000000000000000000000000000000000000001000000100295200100000000000000000000000000010030000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................241509.00509000000010000000000000000000000000020000000100000000000000000000000000000000000000151714250000000001000000000000000600000000000000000000000000046112135124000010000000000000000000000000000000000000010000000000000000000000000000003011290110000000034000000000000000000000000000000000000000000000000075000000020000000121000000000000000010000000
..............................................................................................................ACC----T---AAGGTCCCGATCCTG..............................................................................................................................................................................................................191450.0045000000000000000000000000000000000000000000000000000000000000000000000000000000000074805144910000100020000000000990001200400000000000000000000000007000300000000000000000000000000000000000000000000000000000000000000000000001000200010000000000210000000000000000200000000000000000000000000000000134100000000000000000000000000000000000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTC.......................................................................................................................................191386.00386000000000000000000000000000000000010001000000000001000000000000000000000000000000203010000000000000000000000000000000000000000000000000000023554622610000000000000000000000000000000000000000000000000000000000000000000010000000050400000000490000000000000000000000000000000000000000000000000199100100000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGT..........................................................................................................................................181324.003240000000000000000000000000000000000001000000020000000000000000000000000000000000013165540900000000000000000000210002120600000000000000000000000010550040000000000000000000000000000000000000000000000000010000000000000000000000000010000000000713000000000000000000000000110000000000000000000000089800000000000000000000000000000000020000000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................221320.0032000000010000000000000000000000000004000000000000000000000000000000000000000000000074221162200000000000000000000150001400200000000000000000000000059816000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119100000000000000000000000000000000000000000
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCA......................................................................................................................................191303.0030300000000000000000000000000000000000000000000000000000000000000000000000000000000033023000000000000000000000100001000000000000000000000000002754320000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000230000000000000000000000000000000000000000000000000165300000000000000000000000000000100020000000
........................................................................................................................................GGATGCATCTTGTGCAGTTA..........................................................................................................................................................................................201295.00295000000000000000000000000000000000025000000000000000000000000000000000000000000000007007130000000000000000000061000000700000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG....................................................................................................................................221295.00295000000100000000000000000000000000030000000000000000000000000000000000000000000000386710400000000000000000000010005003000000000000000000000000171974900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000740000000000000000000000000000000000000000000000000146300000000000000000000100000000000000000000
........................................................................................................C-----ACC----T---AAGGTCCCGATCCTG..............................................................................................................................................................................................................201276.00276000000260000000000000000000000000040000000000000000000000000000000000000000000000614442370000000000000000000045000122080000000000000000000000001100060000000000000000000000000000000000000000000000000000000000000000000000000010003010000000011000000000000000010000000000000000000000000000000055400000000000000000000000000000000000000010
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................211263.0026300000000000000000000000000000000004000000000000000000000000000000000000000000000021141711310000000000000000000020008100000000000000000000000000103140021000000000000000000000000000000000000000000000000000000000000000000000000010004000000000045000000000000000000000000000000000010000000000000080100000000000010000000000000000000000000000
........................................................................................................................................GGATGCATCTTGTGCAGTTAT.........................................................................................................................................................................................211247.0024700000027000000000000000000000000001900000000000000000000000000000000000000000000007783770000001000000010000006140009110000000000000000000000000241000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
.........................................................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA......................................................................................................................................231246.0024600000000010000000000000000000000000000000000000000000000000000000000000000000000050841570000010000000000000065000800400000000000000000000000041480000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000330000000000000000100000000000000000000000000000000103100000000000000000000000000000000000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................221217.0021700000001000000000000000000000000002000000000100000000000000000000000000000000000071102700000000001000000000500002000000000000000000000000000847391400000000000000000000000000000000000000000000000000000000000000000000000000000001010000000022000000000010000000000000000000000000000000000000063000000000000000000000000000000000000000000
..............................................................................................................................................................................................TGGGCAAAGTGTGTCTCA......................................................................................................................................181146.00146000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000012780000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000240000000000000000000000000000000000000000000000000107100000000000000000000000000000000000000000
...............................................................................................................CC----T---AAGGTCCCGATCCTG..............................................................................................................................................................................................................181137.0013700000000000000000000000000000000000000000000000000000000000000000000000000000000030101772000000000000000000000300004008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000036000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT....................................................................................................................................241136.001360000000000000000000000000000000000100000000000000000000000000000000000000000000004010100000000000000000000000000000000000000000000000000000151838000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000014000000000000000000000000000000000000000000000000048000000000001000000000000000000000020000000
.......................................................................................................................................GGGATGCATCTTGTGCAGTTATG........................................................................................................................................................................................231107.001070000000100000000000000000000000000100000000000000000000000000000000000000000000002590015000000000000000000002110003000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037000000000000000000000000000000000000000000
................................................................................................................................................................................................................AGATCCTGGCCACATCGTCGC.................................................................................................................21189.0089000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000081514300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000042100000000000000000000000000000000120000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCC......................................................................................................................................20187.00870000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000449100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000059000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA....................................................................................................................................24179.0079000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000200000000000000000000000000062416600000000000000000000000000000000000000000000000000000000000000000000000000000000010000000012000000000000000000000000000000000000000000000000018000000000000000100000000000000000000000000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................20177.007700000000000000000000000000000000003700000000000000000000000000000000000000000000005043001000000000000000000000003200000000000000000000000000215000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT....................................................................................................................................24171.00710000000000000000000000000000000000500000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000005200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000008000000000000000000000000000000000020000000
........................................................................................................................................GGATGCATCTTGTGCAGTTATT........................................................................................................................................................................................22170.00700000000000000000000000000000000000000000000000000000000000000000000000000000000002613002000000000000000000001200000000000000000000000000000003121000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCA........................................................................................................................................20163.00630000000000000000000000000000000000320000000000000000000000000000000000000000000000602220000000000000000000000000100100000000000000000000000032100100000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000007000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCC........................................................................................................................................20162.00620000000000000000000000000000000000480000000000000000000000000000000000000000000000002200000000000000000000000000000100000000000000000000000020100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCT........................................................................................................................................18161.00610000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000395006000000000000000000000000000000000000000000000000000000000000010000000000000000010000000023000000000000000000000000000000000000000001000000025200100001000000000000000000000000000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCT......................................................................................................................................20160.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT....................................................................................................................................24152.00520000000000000000000000000000000000000000000000000000000000000000000000000000000005903100000000000000000000000003000000000000000000000000000437000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000011000000000000000000000000000000000000000000000000011000000000000000000100000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.....................................................................................................................................23152.005200000000000000000000000000000000000000000000000000000000000000000000000000000000030600000000000000000000000000010010000000000000000000000001093000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000018000000000000000000000000000000000000000000
...........................................................................................................................................TGCATCTTGTGCAGTTATGTTT.....................................................................................................................................................................................22147.004700000006000000000000000000000000000000000000000000000000000000000000000000000000010112340000000000000007000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT.......................................................................................................................................21147.00470000001220000000000000000000000000500000001010000000000000000000000000000000000003031000000000000000000000000000000000000000000000000000100044002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000014000000000000000000000000100000000000000000
................................................................................................................................................................................................................AGATCCTGGCCACATCGTCGCA------------------..............................................................................................22144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000000330200000000010000000000000000000000000000000000000000000135020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000
................................................................................................................................................................................................................AGATCCTGGCCACATCGTCG..................................................................................................................20140.0040000000000000000000000000000000000080000000000000000000000000000000000000000000000300000000000000000000000003000000500000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000008400000000000000000000000000000000000000000
droEug1
CCTATAATCCCGAT--A--ATAC---AACCAGCT--A---------------------ATA----------------------GTG---------------AATCT----ACC----AAA-ACGGTCCCGATCCTGGGATCCATCTTGTTCAGTTATGTATTTA---------ACT------CACATCACTGGGCAAAGTGTGTCTCAGGATCTTGACCAAATCATCAAG------------------A----------------------CTTTAAAC-----------------------------TG----------AAA----AGT----AAGTGA--SizeHit CountTotal NormTotal
No Reads
droBia1
CCTATAATCTCGAA--A--AGAC---GACCAGCA--A---------------------AGT----------------------GTG---------------AAGC-----ACCC---G---AAGGTCCCGATCCTGGGACGCATCTTGTGCAGTTATGATTCTG---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAGCATCGCA------------------A----------------------CGTAAACTGA----------AAAAT-ACGT-------GC----------CAA----AGT----AAGTGA--SizeHit CountTotal NormTotal
No Reads
droTak1
CCTATAATCTCGAA--A--AGAC---GACCAGCT--T---------------------ATT----------------------GTG---------------AACC-----AACC---A---AAGGTCTCGATCTTGGGATGCATCTTGTGCAGTTATGATTCTA---------TAT------CTCATCACTGGGCAAAGTGTGTCTCAAGAGTCTGGCCACAA----GC----------------------------------------------------AACCAAAGAAAT----A-AT-------CT----------CAA----AGT----AAGTGA--SizeHit CountTotal NormTotal
No Reads
droEle1
CCTATAATCTCGAA--A--AGAC---GACCATCTCGA---------------------ACA----------------------GTG---------------AATT-----ATCG---A---AAGGCCCCGATCTTGGGATGCATCTTGTGCAGTTATGTTA--A---------CCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCATCGC-------------------------------------------TTC------AACCATACAAA-GCC-A-AT-------AC----------AAA----AGT----AAGTGA--SizeHit CountTotal NormTotal
No Reads
droRho1
CCTATAATCTTGAA--A--AGAC---GACCAGCT--A---------------------ACT----------------------GTG---------------ATCA-----AAC----A---AAGGCCTCGATATTGGGACGCATCTTGTGCAGTTATGTTTACA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGTCACATCATCGCT------------------A----------------------CTTC------AACCATATAAAT-AC-A-AT-------AC----------AAA----AGT----AAGTGA--SizeHit CountTotal NormTotal
No Reads
droFic1
CCTATAATCTCGAG--A--AGAC---GACCAGTA--A---------------------AGT----------------------GTT---------------AACT-----ACCA---A---AAGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTT--A---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGACCACATCATCGAA------------------T----------------------CTTC------AAACAAACCAAT----A-AT--------C----------CAA------C----AAGTGAACSizeHit CountTotal NormTotal
No Reads
droKik1
CCTATAATCTCAAA--A--CGAC---GACCAGCA--AT--------------------CCA----------------------GTG---------------AACC-----AGC----A---AAGGTCCCGAACTTGGGATGCATTTTGTTCAGTCATGTCAACG--TGA----TAC------TCCATCACTGGGCAAAGTGTGTCTCAAGAACCTGACCACCACGACGGAG-----------------A----------------------CTCCAA--CA----------GC--AGC-ACCAAGAAAGTAAAGTTC---CA-------A----AAGTGA--SizeHit CountTotal NormTotal
No Reads
droAna3
CCTATAATCTATAA--AAAAGCC---GTCCAGAC--A---------------------TCT----------------------GTG---------------AGCC-----CCCA---A---CTGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACCAA---AAATA-TA-------TCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCAACGAA------------------G----------------------AATCAATTCA----------T----------------CA----------AAT----TGT----AAGTGA-TSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2211247.001247197249603696564
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................211153.001532310719121
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................20147.004710293221
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................21122.00221812001
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................22111.0011019100
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................23110.0010421111
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................2219.009152100
........................................................................................................................................GGACGCATTTTGTGCAGTTATG........................................................................................................................................................................................2217.007043000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2317.007231100
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................1917.007070000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT....................................................................................................................................2415.005410000
......................................................................................................................................TGGGACGCATTTTGTGCAGTTA..........................................................................................................................................................................................2213.003003000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................2013.003003000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCATT....................................................................................................................................2313.003300000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCC........................................................................................................................................2013.003030000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC....................................................................................................................................2412.002020000
......................................................................................................................................TGGGACGCATTTTGTGCAGTT...........................................................................................................................................................................................2112.002002000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................2012.002110000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT.......................................................................................................................................2112.002100010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................2212.002002000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.....................................................................................................................................2312.002020000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.....................................................................................................................................2312.002101000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTC.......................................................................................................................................1912.002002000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC......................................................................................................................................2211.001001000
...............................................................................................................CCA---A---CTGGCTACGATCTTG..............................................................................................................................................................................................................1911.001001000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCT........................................................................................................................................1911.001100000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTT....................................................................................................................................2411.001100000
........................................................................................................................................................................................CATCACTGGGCAAAGTGTGTCT........................................................................................................................................2211.001010000
.....................................................................................................................................TTGGGACGCATTTTGTGCAGTT...........................................................................................................................................................................................2211.001000001
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGT..........................................................................................................................................1811.001000100
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTC...................................................................................................................................2511.001010000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA....................................................................................................................................2411.001000100
........................................................................................................................................................................................CATCACTGGGCAAAGTGTGTCC........................................................................................................................................2211.001010000
..............................................................................................................CCCA---A---CTGGCTACGATCTTG..............................................................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCA........................................................................................................................................2011.001010000
droBip1
CCTATAATCTCGAA--AATGAAC---GTCCAGAA--A---------------------TCT----------------------GTG---------------AATC-----CTCC---GCTCCGGGTCACGATCTTGGGATGCATTTTGTGCAGTTATGCATCAA---AATCA-T-------AACCATCACTGGGCAAAGTGTGTCTCATGATCTGGGCCAACTCAACAAAG-----------------A-----------------------ATCCAGTC-------------------A--------TC----------AAA----TGT----AAGTGG-TSizeHit CountTotal NormTotal
No Reads
dp5
CTTATAATCCCACA--G--TAAGCGA--TCAGCG--A-------GCGTCTCAGCGCACATT----------------------GTG---------------AACG-----ACGATACC---GAGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAG------------------T-------G---------------TAC------AAGAATGGCG--------A--------TA----------AAG----TGT----GTGTGT--SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................22114794.001479407242804011228235010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................2111277.0012771111840332002000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................201222.0022201512408102000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................221113.00113054805901000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................21199.0099079201800000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................20192.009205308400000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................22185.0085002905402000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................23154.00540132901200000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................23145.0045052201800000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCC........................................................................................................................................20143.004300420100000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................22131.003100103000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.....................................................................................................................................23126.002602160800000
........................................................................................................................................GGATGCATTTTGTGCAGTTATG........................................................................................................................................................................................22125.002501402000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.....................................................................................................................................23122.002202150500000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGG....................................................................................................................................22115.001500001500000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................20113.001301120000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT....................................................................................................................................24112.00120090201000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................19111.00110140212010
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCA......................................................................................................................................1916.0060200400000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTC.......................................................................................................................................1915.0050100400000
..................................................................................................................TACC---GAGGCAACGATCCTG..............................................................................................................................................................................................................1915.0050010400000
......................................................................................................................................TGGGATGCATTTTGTGCAGTTA..........................................................................................................................................................................................2214.0040010300000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2414.0040020200000
.......................................................................................................................................GGGATGCATTTTGTGCAGTTATG........................................................................................................................................................................................2314.0040010300000
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCAGGA...................................................................................................................................2213.0030000300000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCT........................................................................................................................................1813.0030010200000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCC......................................................................................................................................2113.0030120000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT.......................................................................................................................................2113.0030020100000
.....................................................................................................................................CTGGGATGCATTTTGTGCAGTT...........................................................................................................................................................................................2213.0030030000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACA....................................................................................................................................2412.0020000200000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTTC......................................................................................................................................2212.0020000200000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTG.......................................................................................................................................2112.0020010100000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC.....................................................................................................................................2312.0020010100000
......................................................................................................................................TGGGATGCATTTTGTGCAGTT...........................................................................................................................................................................................2112.0020000200000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCA.....................................................................................................................................2312.0020000200000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCG........................................................................................................................................2012.0020000001010
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGGT...................................................................................................................................2312.0020000200000
................................................................................................................GATACC---GAGGCAACGATCCTG..............................................................................................................................................................................................................2111.0010000100000
...................................................................................................................ACC---GAGGCAACGATCCTG..............................................................................................................................................................................................................1811.0010000100000
..............................................................................................................................................................................................TGGGCAAAGTGTGTCTCA......................................................................................................................................1811.0010100000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC....................................................................................................................................2411.0010010000000
.........................................................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2311.0010100000000
droPer2
CTTATAATCCCACA--G--TAAGCGA--TCAGCG--A-------GCGTCTCAGCGCACATT----------------------GTG---------------AACG-----ACGATACC---GAGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAG------------------T-------G---------------TAC------AAGAATGGCG--------A--------TA----------AAG----TGT----GTGTGT--SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2211931.0019316727170718544
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................211281.00281198866045
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................20145.004511281014
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................20115.00150015000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................22112.00120012000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................2117.007061000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................2216.006103011
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2315.005004010
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGG....................................................................................................................................2214.004004000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................2214.004103000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................1914.004013000
........................................................................................................................................GGATGCATTTTGTGCAGTTATG........................................................................................................................................................................................2213.003003000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................2012.002020000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................2312.002011000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAT......................................................................................................................................2211.001001000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2411.001000010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCC........................................................................................................................................2011.001000001
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTT....................................................................................................................................2411.001000001
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCAGG....................................................................................................................................2111.001001000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGT..........................................................................................................................................1811.001001000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.....................................................................................................................................2311.001001000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAG.....................................................................................................................................2111.001001000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAGA....................................................................................................................................2411.001001000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTC.......................................................................................................................................1911.001001000
.................................................................................................................................................TTGTGCAGTTATGTCTACG--TGATCA--TC------C...............................................................................................................................................................2811.001001000
droWil2
CTTATAATCTTTAA--A--CTAC---AATCAAAA--TACAATTGGAGTGTTAAAAAAAAAG----------------------GAG---------------AGTA-----ATCGAATT---TAGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT------CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAAC------------------C----------------------CAAAAAGTTA----------GC----C-AACCAAAC--T----------TAGTGAGTGA----CTATGC--SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................22142754.0042754092642474182
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................211559.0055921115441
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................201368.003680203651
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................201286.002860622771
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................231278.002780302741
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................21151.00510110400
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................23143.0043010420
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCATA....................................................................................................................................22140.0040000400
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................22139.0039000390
........................................................................................................................................GGATGCATTTTGTGCAGTTATG........................................................................................................................................................................................22136.0036000360
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................22129.0029010280
..................................................................................................................AATT---TAGACCATGATTTTG..............................................................................................................................................................................................................19119.0019010180
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................22118.0018000180
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.....................................................................................................................................23113.0013000130
......................................................................................................................................TGGGATGCATTTTGTGCAGTTA..........................................................................................................................................................................................22111.0011000110
...................................................................................................................ATT---TAGACCATGATTTTG..............................................................................................................................................................................................................18110.0010000100
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT....................................................................................................................................2419.00901080
......................................................................................................................................TGGGATGCATTTTGTGCAGTT...........................................................................................................................................................................................2118.00800080
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTC.......................................................................................................................................1917.00700070
.......................................................................................................................................................................................TCATCACTGGGCAAAGTGTGTC.........................................................................................................................................2216.00600060
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA....................................................................................................................................2416.00600060
..............................................................................................................................................................TCTTCATGTGATAATTCT------CTCA............................................................................................................................................................2216.00600060
..............................................................................................................................................................................................TGGGCAAAGTGTGTCTCA......................................................................................................................................1815.00501040
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................1915.00500050
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCA......................................................................................................................................1914.00400040
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................2114.00400040
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................2014.00404000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2114.00400040
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.....................................................................................................................................2313.00300030
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGT..........................................................................................................................................1813.00300030
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCT........................................................................................................................................1912.00202000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTA.......................................................................................................................................2112.00200020
........................................................................................................................................................................................CATCACTGGGCAAAGTGTGTCT........................................................................................................................................2212.00200020
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCATT....................................................................................................................................2212.00200020
................................................................................................................................................................................................................TAATTTTGGTAACCATATC...................................................................................................................1912.00200020
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCCA.......................................................................................................................................2112.00200020
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAG......................................................................................................................................2211.00100010
.........................................................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2311.00100010
.......................................................................................................................................................................................TCATCACTGGGCAAAGTGTGT..........................................................................................................................................2111.00100010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT....................................................................................................................................2411.00100010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAACC...................................................................................................................................2511.00100010
........................................................................................................................................GGATGCATTTTGTGCAGTTAT.........................................................................................................................................................................................2111.00100010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTA.........................................................................................................................................1911.00100010
.....................................................................................................................T---TAGACCATGATTTTGGGA...........................................................................................................................................................................................................1911.00100010
..........................................................................................................................................ATGCATTTTGTGCAGTTATGT.......................................................................................................................................................................................2111.00100010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATATA..................................................................................................................................2611.00100010
......................................................................................................................................TGGGATGCATTTTGTGCAGTTT..........................................................................................................................................................................................2211.00100010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTTCA.......................................................................................................................................2140.25100010
droVir3
CGTATAATCGCAAA--A--AGA------ACAGCA--A---------------------AAAAAAATAAAAATAAAACAATATTAT--TAAATAAAAAT----ACC-----AGAATCTC---ATAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTGCC---------TCC--AAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACCAGAGAAAATAACGCAG---CTCAGATATTCCAGTG------------------------------------------T--------TT----------CAG----TGT--GACAGTGT--SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................22119010.001901033151096123111112921621211257223111152681821564212538752531620025581421386315147325619155223421000292832712000461683430001003181471744572
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................2111472.0014722534100000010013301100000000000001190528778351000038285547416017171044300047630001857200000266561042028
........................................................................................................................................GGATGCATTTTGTGCGGTTATG........................................................................................................................................................................................2211462.00146200031000000001110000000000000100001120165203381528000011060000000000000070000000300000000110
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................231518.00518000150000000001001000000000000000300755815867000003122121000010001241000151230000001771064
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................221409.0040900038000000000200000000000010000011910990000116512741633141200057110001111650010005428382012
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................201167.00167001350000000001000001000001001101601225245100001050232300100003180000000300000041105
..................................................................................................................TCTC---ATAGCTCTGCTTTTG..............................................................................................................................................................................................................191123.0012300020000000000000000000000000000130920146100000110000000000000000000001100000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................201106.0010600000000000000100000000000000000407163617000001000000000000000230000000000000010000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................23170.0070000120000000000000000000000000000204714500000231112020111000130000000200000011210
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................22161.0061000190000000001000000000000000000200110000000010000000000000201000020300000072100
........................................................................................................................................GGATGCATTTTGTGCGGTTAT.........................................................................................................................................................................................21158.005800020000000001000000000000000000206793100000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................24149.004900030000000000000000000000010000406711500000010100000000000030000111200000010010
.................................................................................................................ATCTC---ATAGCTCTGCTTTTG..............................................................................................................................................................................................................20145.0045000000000000010000000000000000003031321900001200000000000000000000001000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAA...................................................................................................................................25120.00200001000000001000000000000000000010127400000000000000000000020000001000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCC........................................................................................................................................20118.001800018000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT.....................................................................................................................................23115.00150003000000000000000000000000000000000000000102023021000000000000000000000000001
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................21115.00150010000000000000000000010000000010212200000000000000000000050000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT....................................................................................................................................24114.00140002000000000000000000000000000000000000000102112001100000020000000000000010000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................22114.00140100000000000000000000000000000000102000000000000010000000080000000000000000001
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................19113.00130002000000000000000000000000010000111000000010021110000000010000000000000000000
...................................................................................................................CTC---ATAGCTCTGCTTTTG..............................................................................................................................................................................................................18113.00130000000000000000000000000000000010211500002010000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAA..................................................................................................................................26111.00110000000000000100000000000000000000132000000000000000000000010000001000000010100
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................2119.0090000000000000000000000000000000020130300000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.....................................................................................................................................2316.0060004000000000000000000000000000000100000000000000000000000000000000000000000100
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT....................................................................................................................................2416.0060002000000000000000000000000000000012100000000000000000000000000000000000000000
.........................................................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2316.0060000000000000000000000000000000000100100000010100000000000010000010000000000000
................................................................................................................................................................................................................AAATTGTGGCTACCAGAGAA..................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000004011
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAAA.................................................................................................................................2715.0050000000000000000000000000000000000103000000000000000000000000001000000000000000
................................................................................................................................................................................................................AAATTGTGGCTACCAGAGA...................................................................................................................1915.0050000000000000000000000000000000000001000000000000000000000000000000100000001101
................................................................................................................AATCTC---ATAGCTCTGCTTTTG..............................................................................................................................................................................................................2115.0050000000000000000000000000000000000000300001000000000000000000000000100000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTC.......................................................................................................................................1915.0050001000000000000000000000000000000040000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT....................................................................................................................................2415.0050000000000000000000000000000000000000000000100003100000000000000000000000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................2114.0040000000000000000000000000000000000102100000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTA.......................................................................................................................................2114.0040000000000000000000000000001000000001100000000000000000000010000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC....................................................................................................................................2414.0040001000000000000000000000000000000000000000010101000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.....................................................................................................................................2314.0040001000000000000000000000000000000021000000000000000000000000000000000000000000
................................................................................................................................................................................................................AAATTGTGGCTACCAGAG....................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000010000000100000020000
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCA......................................................................................................................................1914.0040001000000000000000000000000000000001000000000001000000000010000000000000000000
........................................................................................................................................GGATGCATTTTGTGCGGTTATC........................................................................................................................................................................................2213.0030000000000000000000000000000000000010000001000000000000000010000000000000000000
................................................................................................................................................................................................................AAATTGTGGCTACCAGAGAAAATAAA............................................................................................................2613.0030001000000000000000000000000000000000000000000000000000000000000000000000001010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAC....................................................................................................................................2413.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATCT...................................................................................................................................2513.0030000000000000000000000000000000000000000000110000010000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCT.....................................................................................................................................2313.0030000000000000000000000000000000000000000000100010000000000000000000000000001000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAC...................................................................................................................................2513.0030002000000000000000000000000000000000000000000100000000000000000000000000000000
........................................................................................................................................GGATGCATTTTGTGCGGTTA..........................................................................................................................................................................................2013.0030000000000000000000000000000000010100100000000000000000000000000000000000000000
........................................................................................................................................GGATGCATTTTGTGCGGTTATGT.......................................................................................................................................................................................2312.0020000000000000000000000000000000000010100000000000000000000000000000000000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCATT....................................................................................................................................2212.0020000000000000000000000000000000000101000000000000000000000000000000000000000000
...................................................................................................................CTC---ATAGCTCTGCTTT................................................................................................................................................................................................................1612.0020000000000000000000000000000000000000000000110000000000000000000000000000000000
........................................................................................................................................GGATGCATTTTGTGCGGTTATT........................................................................................................................................................................................2212.0020000000000000000000000000000000001000000000000000000000000010000000000000000000
........................................................................................................................................GGATGCATTTTGTGCGGTTATGA.......................................................................................................................................................................................2312.0020000000000000000000000000000000010010000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACC....................................................................................................................................2412.0020000000000000000000000000000000000000000000000001000000000000000000000000010000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCT........................................................................................................................................1812.0020000000000000000000000000000000000001100000000000000000000000000000000000000000
..............................................................................................................................................................TCTGCC---------TCC--AAAACC..............................................................................................................................................................1512.0020000000000000000000000000000000000000000000000020000000000000000000000000000000
................................................................................................................................................................................................................AAATTGTGGCTACCAGAGAAAATAAC............................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000002000
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CC-----AGAATCTC---ATAGCTCTGCTTTTG..............................................................................................................................................................................................................2512.0020000000000000000000000000000000000000100000000000000000000000000000100000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTG.............................................................................................................................................1531.3340000000000000000000000000000000000000000000021000010000000000000000000000000000
.............................................................................................................................................CATTTTGTGCGGTTATG........................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................TTTGTGCGGTTATGTCTG....................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC......................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
........................................................................................................................................GGATGCATTTTGTGCGGTTATGC.......................................................................................................................................................................................2311.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................GGGATGCATTTTGTGCGGTTATG........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAGC....................................................................................................................................2411.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
droMoj3
CGTATAATCGA--AACG--AAAC---AGCAAGGA--A-A-----AAGTC----------CA----------------------GTC---------------AATTCAACGGAACTCTC---GCAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAACGA---------TTG--GAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACAAAGGAGG-AGTGTTTCAG---TTCCAGTGTTTCACTATCAGTGTTTC------ACTT--------------------------------------------T----CAGTGT--SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2219703.0097031138284452572444
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC.......................................................................................................................................2114606.00460622962343021
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCT........................................................................................................................................2011411.0014115891313121
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCC........................................................................................................................................201415.0041500004150
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT......................................................................................................................................221293.00293226012640
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC......................................................................................................................................221214.00214030001840
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.....................................................................................................................................231114.0011407101060
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.....................................................................................................................................23178.007802600511
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA......................................................................................................................................20145.00450370071
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTC.........................................................................................................................................19142.00420201390
........................................................................................................................................................................................CATCACTGGGCAAAGTGTGTCT........................................................................................................................................22133.00330500280
............................................................................................................................................................TCTAACGA---------TTG--GAAACCCA............................................................................................................................................................19131.00310100300
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC....................................................................................................................................24130.00300200280
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.....................................................................................................................................23125.00250100240
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT....................................................................................................................................24122.00221600150
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA......................................................................................................................................21119.00193400111
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC.....................................................................................................................................23119.00190200170
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG......................................................................................................................................22118.00180130050
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT.....................................................................................................................................23117.00171000160
..................................................................................................................TCTC---GCAGCTCTACTTTTG..............................................................................................................................................................................................................19113.0013070060
........................................................................................................................................................................................CATCACTGGGCAAAGTGTGTCC........................................................................................................................................22113.00130000130
.................................................................................................................CTCTC---GCAGCTCTACTTTTG..............................................................................................................................................................................................................20111.0011050060
................................................................................................................................................................................................................AAATTGGGGCAACTAGCAC...................................................................................................................19111.00110100100
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.....................................................................................................................................2319.009020070
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA....................................................................................................................................2418.008020060
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTCA......................................................................................................................................1916.006010050
................................................................................................................ACTCTC---GCAGCTCTACTTTTG..............................................................................................................................................................................................................2115.005000050
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCT........................................................................................................................................1915.005000050
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTG.......................................................................................................................................2115.005010040
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTC.......................................................................................................................................1915.005030020
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT.......................................................................................................................................2115.005000050
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTC.......................................................................................................................................2014.004000040
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT...................................................................................................................................2514.004000040
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG....................................................................................................................................2413.003000030
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTC....................................................................................................................................2413.003000030
.............................................................................................................................................................................................CTGGGCAAAGTGTGTCTC.......................................................................................................................................1813.003000030
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCT........................................................................................................................................1813.003000030
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGT..........................................................................................................................................1813.003010020
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTCC....................................................................................................................................2412.002000020
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCC......................................................................................................................................2012.002010010
...................................................................................................................CTC---GCAGCTCTACTTTTG..............................................................................................................................................................................................................1812.002010010
..............................................................................................................................................................................................TGGGCAAAGTGTGTCTCA......................................................................................................................................1812.002010010
................................................................................................................................................................................................................AAATTGGGGCAACTAGCACAA.................................................................................................................2112.002000020
................................................................................................................................................................................................................AAATTGGGGCAACTAGCACA..................................................................................................................2012.002000020
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTCT....................................................................................................................................2412.002000020
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCT.....................................................................................................................................2311.001010000
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCC.....................................................................................................................................2311.001000010
................................................................................................................................................................................................................AAATTGGGGCAACTAGCACT..................................................................................................................2011.001000010
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAC....................................................................................................................................2411.001000010
............................................................................................................................................................................................ACTGGGCAAAGTGTGTCTCT......................................................................................................................................2011.001000010
droGri2
CGTATAATC--GAA--A--TG-----GATCAGCT--A---------------------AAA----------------------GTTGTACATAAAAATGCTTGCC-----AAATTTTC---ATAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACT----------CTTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTAAAGAAAA------------------T-------A---------------ATA------TAAAATGGCA--------A--------TT------TTTGCAG----TGTTTTGCAGTGTTTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..........................................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA......................................................................................................................................2221.50321
...........................................................................................................................................................................................CACTGGGCAAAGTGTGTCTCT......................................................................................................................................2120.50110

Generated: 10/20/2015 at 07:38 PM