ID:

der-mir-219

 Coordinate:

scaffold_4784:16541320-16541416 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

5pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.5 -32.3 -32.3

Flybase annnotation

utr5 [utr5_plus_8436]; pre_miRNA [Dere\mir-219-RM]; miRNA [Dere\miR-219-RA]

No Repeatable elements found

Sense Strand Reads

CCAGGATGGAAAAGCTTGCGCCGCGAAGCGAAAATAAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGTACATTTTATTGAAACGAAAT

*****************************************************(((.(((((.((((.((((.(((((..(((((((((((..(((((...))))))))))))))))..))))))))).)))).)))))..))).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 V108

head

 V060

head

 GSM1528801

follicle cells		 M057

embryo

 V040

embryo

 V107

male body
....................................................................TGATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 0 1 1017.00 1017 944 51 14 0 7 1 0
....................................................................TGATTGTCCAAACGCAATTCT............................................................................................................ 21 0 1 333.00 333 252 39 13 24 5 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCG................................................................... 22 0 1 199.00 199 8 145 22 0 0 11 13
....................................................................TGATTGTCCAAACGCAATTCTT........................................................................................................... 22 0 1 155.00 155 128 24 2 0 1 0 0
.....................................................................GATTGTCCAAACGCAATTCTTG.......................................................................................................... 22 0 1 44.00 44 44 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTC............................................................................................................. 20 0 1 41.00 41 30 8 1 0 2 0 0
....................................................................TGATTGTCCAAACGCAATT.............................................................................................................. 19 0 1 12.00 12 8 4 0 0 0 0 0
.....................................................................GATTGTCCAAACGCAATTCT............................................................................................................ 20 0 1 10.00 10 10 0 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 9.00 9 5 3 0 0 1 0 0
.....................................................................GATTGTCCAAACGCAATTCTT........................................................................................................... 21 0 1 9.00 9 9 0 0 0 0 0 0
...........................................................................................................AAGGGTTGCGACTGGGCATCGC.................................................................... 22 0 1 9.00 9 0 6 0 0 0 1 2
.......................................................................TTGTCCAAACGCAATTCTTG.......................................................................................................... 20 0 1 8.00 8 2 6 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGC.................................................................... 21 0 1 7.00 7 0 3 1 0 3 0 0
......................................................................ATTGTCCAAACGCAATTCTTG.......................................................................................................... 21 0 1 7.00 7 7 0 0 0 0 0 0
....................................................................TGATTGTCCAGACGCAATTCTTG.......................................................................................................... 23 1 1 7.00 7 7 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTGT......................................................................................................... 24 0 1 5.00 5 1 2 2 0 0 0 0
....................................................................TGATTGTCCAAACGCTATTCTTG.......................................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
....................................................................TGATTGTCCAAACTCAATTCTTG.......................................................................................................... 23 1 1 5.00 5 4 1 0 0 0 0 0
....................................................................TGATTGTCAAAACGCAATTCTTG.......................................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
............................................................................................................ATGGTTGCGACTGGGCATCGCG................................................................... 22 1 1 5.00 5 0 3 0 0 1 1 0
.....................................................................TATTGTCCAAACGCAATTCTTG.......................................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0
....................................................................TCATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
....................................................................TGATTTTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 4.00 4 3 1 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTCT............................................................................................................ 21 1 1 4.00 4 2 1 0 0 1 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCGT.................................................................. 23 1 1 4.00 4 0 2 0 0 0 1 1
....................................................................TGATTGTCCAAACGCAATTCTTGA......................................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0 0
....................................................................TGGTTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
...................................................................CTGATTGTCCAAACGCAATTCTTG.......................................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0 0
............................................................................................................AGGGTTGCTACTGGGCATCGCG................................................................... 22 1 1 3.00 3 0 3 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCGTG.......................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................ATTGTCCAAACGCAATTCTTGT......................................................................................................... 22 0 1 3.00 3 1 2 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTA.......................................................................................................... 23 1 1 3.00 3 2 1 0 0 0 0 0
............................................................................................................AGGGCTGCGACTGGGCATCGCG................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTT.......................................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0
....................................................................TGATTGTCAAAACGCAATTCT............................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................TGATTGTCCACACGCAATTCTTG.......................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTTGGCATCGCG................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
....................................................................TAATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................GGGGTTGCGACTGGGCATCGCG................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
....................................................................TGATTGTACAAACGCAATTCTTG.......................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
...................................................................CTGATTGTCCAAACGCAATTCT............................................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................TGATTATCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTCTT........................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTTTTG.......................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
...................................................................GTGATTGTCCAAACGCAATTCTTG.......................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................ATGGTTGCGACTGGGCATCGC.................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0
............................................................................................................AGGGTTGCGACTGGGCATCACG................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................ATGGTTGCGACTGGGCATCGCGT.................................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0
....................................................................TGATTGTCCCCACGCAATTCTTT.......................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0
....................................................................TGACTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................GATTGTCCAAACGCAATTC............................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGAG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................AGGGTTGCGACCGGGCATCGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................GATTGTCAAACCGCAATTCTTG.......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTG........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGCCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCG............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCTAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCCATTCTTG.......................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................TGATTGTCCAAACGCACTTCT............................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................AGGGTTGTGACTGGGCATCGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................AGTGTTGCGACTGGGCATCGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATCCTTG.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................CTGATTGTCCAAACGCAATTCTT........................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGCTTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGACCAAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGAGACTGGGCATCGC.................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0
....................................................................TGAATGTCCAAACCCAATTCTTG.......................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCAAAACGCAATTC............................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTCTTGT......................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTCTCCAAACGCAATTCTT........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGTCCAAACGTAATTCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AAGGTTGCGACTGGGCATCGCG................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................TGATTGTCCAAACCCAATTCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCT................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................GGATTGTCCAAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................CGATTGTCCAAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGTCATCGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................AGCGTTGCGACTGGGCATCGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................AGGGTTGTGACTGGACATCGCG................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
...........................................................................................................AATGGTTGCGACTGGGCATCGC.................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAACTCTTG.......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATGGCG................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................TGATTGTCAAAACGCACTTCT............................................................................................................ 21 2 1 1.00 1 0 0 0 1 0 0 0
...................................................................GTGATTGTCCAAACGCAATTCT............................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGAGT.................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGTCCAAACGCTATTCTT........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................GATGATTGTCCAAACGCAATTCTTG.......................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACCCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACCCAATTCTT........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGTAACTCT............................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATTGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTCT......................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGAATCGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCTCG................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................AGATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGAATGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................AGATTGTCCAAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................GATTGTCCAAACTCAATTCT............................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCAAAACGCAATTCTTGC......................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCGT........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCTATTCGGG.......................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGTGACTGGGCCTCGCG................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
....................................................................TGATTGTACAAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGTCTGGTCATCGCG................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
...................................................................TTGATTGTCCAGACGCAATTCTTG.......................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCCCG................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................AGGGTTCCGACTGGGCATCGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTGAA........................................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGTGCATCGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGTTCAAAAGCAATTCT............................................................................................................ 21 2 1 1.00 1 0 0 0 1 0 0 0
...................................................................ATGATTGTCCAAACGCAATTCT............................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATGCTTG.......................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGTATCGCGT.................................................................. 23 2 1 1.00 1 0 0 0 0 1 0 0
............................................................................................................AGGGTTGCGACTAGGCATCGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCA............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGTTTGCGACTGGGCATCGCG................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0
........................................................................TGTCCAAATGCAATTCTTG.......................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATGCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAGTTCGTG.......................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTCTCCAAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCCAACGCACTTCTT........................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0
....................................................................TGTTTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCATTTCT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TGGTCCAAACGCAATTCTTG.......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGGG................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTA........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCACACGCAATTCTT........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGAATGGGCATCGCG................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGATTGTCCAGACGCAATTCTT........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................GTGATTGTCCAAACGCAATTCTT........................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTGG......................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCG..................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................TCATTGTCCAAACGAAATTCTT........................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
.....................................................................CATTGTCCAGACGCAATTCTTG.......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................TGATATTCCAAACGCAATTCT............................................................................................................ 21 2 2 0.50 1 0 1 0 0 0 0 0
....................................................................TGATTTTCCAAACGCAATTC............................................................................................................. 20 1 2 0.50 1 0 1 0 0 0 0 0
....................................................................TGACTGTCCAAGCGCAATTCTT........................................................................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0
............................................................................................................AGGGTTGCGACTTGCCATCGCT................................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0
....................................................................TGATTGTCCAAACGCATTCT............................................................................................................. 20 3 10 0.20 2 1 1 0 0 0 0 0
.......................................................................GATTCCAAACGCAATTCTTG.......................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0

Anti-sense strand reads

GGTCCTACCTTTTCGAACGCGGCGCTTCGCTTTTATTTATTTATAAACCAATTAAGCTAAAAATCGATACTAACAGGTTTGCGTTAAGAACAACTATAAGTTATAAGTTCCCAACGCTGACCCGTAGCGCCGAGCTTTATTCTTATGTTGAGCCGTTGGTTTAGTGGTGATTTCACATGTAAAATAACTTTGCTTTA

****************************************************(((.(((((.((((.((((.(((((..(((((((((((..(((((...))))))))))))))))..))))))))).)))).)))))..))).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total V040

embryo

 V060

head

 M055

female body
................................................................................GAGGTAAGAACAACTATAAGGT............................................................................................... 22 3 1 1.00 1 1 0 0
................................................................................GCGTTATGAACAACTGTAAGGT............................................................................................... 22 3 1 1.00 1 1 0 0
........................................................................ACAGGTATGCGGTAGGAAC.......................................................................................................... 19 3 10 0.10 1 0 1 0
..................................................................................................................................................................AATGGTGATTTGACATGGA................ 19 3 17 0.06 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4784:16541270-16541466 - der-mir-219 Known_mirbase CCA----GGATG-GAAAAGCT-TGCG-CCGCGAAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCACCACTAA-AGTGTACAT----TTT--------ATT-----GAAACGAAAT
droYak3 3L:16762540-16762741 - dya-mir-219 Known_mirbase CCA----GGATG-AAAAAGCT-TGCG-CCGCGAAGCGAAGCG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCACCACTAA-AGTGAACTT----TTT--------ATC-----GAAACGAAAT
droSec2 scaffold_0:9359429-9359624 + dse-mir-219 Known_mirbase CCA----GGATG-AAAAAGCT-TGCG-CCGCGGAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCACCACTGT-AGTGAACT-----TTT--------ATT-----GAAACGAAAT
droSim2 3l:16883535-16883730 + dsi-mir-219 Known_mirbase CCA----GGATG-AAAAAGCT-TGCG-CCGCGGAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCACCACTGA-AGTGAACT-----TTT--------ATT-----GAAACGAAAT
dm3 chr3L:17308056-17308251 + dme-mir-219 Known_mirbase CCA----GGATG-AAATAGCT-TGCG-CCGCGGAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCACCACTGA-AGTGAACT-----TTT--------ATT-----GAAACGAAAT
droEug1 scf7180000409711:25955-26161 - AGC---TGGATG-AAAAAGCT-TTTG-CTGCGTAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAGCCAAA--TCATCATTGA-AGTGCATTG----TAAACTGAAAA--TAATTTA-TA-TTAAT
droBia1 scf7180000302428:6673808-6674010 + CCC----GGATA-CAAAAGCT-TTCG-CCGCGGAG-----CG--------------------------------------------------AAACAAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCGTGAATCA-AGTGCATTA----TTTATCGAAAT--ATAC-----CACAGAT
droTak1 scf7180000415815:374360-374565 - CCAAGCCGGATG-AAAAAGCT-TTCG-CTTCGGAG-----TG--------------------------------------------------AGAATATATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAA--TCTTAAACCC-AGTGCATTA----TAGATTGGAAT--AAAT------TGAAAC
droEle1 scf7180000490993:219013-219217 + CCA----AGATGGAAAAAGCT-ATCG-CTGCGGAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAT--TCATTTATAA-ACTGCATTA----TACGCCGTATT--AAAT----AATAAAAA
droRho1 scf7180000780124:81226-81413 + CG-----GGATG-GAAAAGCT-ATCG-CTGCGAAG-----CG--------------------------------------------------AAAATAAATATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAA--TCATCAATAA-AGTGCTTTA----TAAA---------------------TAAA
droFic1 scf7180000454107:825173-825362 + AC-----GGATC-GAAAAGCT-TTCG-CTGCGGAG-----TG-----------------------------C--------------------AAAATAAACAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAG--TCATTA-TCA-TGTGCATTA----T-------------------AATCGGAAT
droKik1 scf7180000302474:640158-640298 + CCA----GGAGG---AAAGCT-AC-------------------------------------------------------------------------ATAGTTATA-CTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAT-T-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACGACTCGGCAACCAA--------------------------------------------------------
droAna3 scaffold_13337:8265299-8265448 + dan-mir-219 Known_mirbase TGG----AGCTG-AGAAAACTTTTCG-CAGTGACC-----TG--------------------------------------------------AAAAAC--AAAATATTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAAC-------------------------------------------------------------------
droBip1 scf7180000396541:409843-410031 + AGT----AGA-G-AAAACTT--TTCAGCAGTGACC-----TG--------------------------------------------------AAAAACAAAATATT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACAAAGAAAACCAT--TTAAACATGT------ATATTCC-CTT--------ATG-----G-----AAAC
dp5 XR_group6:9338083-9338308 - dps-mir-219 Known_mirbase C------AGATA-TAAAAGCT-TTCA-GTTCTCAG-----CTCTCAGCTCTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATC--AGTATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAA--AT----------------------CTA--------ATT-----TAAACGTACT
droPer2 scaffold_35:387381-387599 + dpe-mir-219 Known_mirbase C------AGATA-TAAAAGCT-TTCA-GTTCTCAG-----CT-------CTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATC--AGTATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAA--AT----------------------CTA--------ATT-----TAAGCGTACT
droWil2 scf2_1100000004768:2086470-2086636 + dwi-mir-219 Known_mirbase -----------------------------------------G--------------------------------------------------AAAACA---AAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA-CCCAATAACCAAAGTGAAACATTGTAA----ATATTCATTTA--------ATT----TG-TAATAAAT
droVir3 scaffold_13049:5991407-5991572 - dvi-mir-219 Known_mirbase AAA-GCC--ATT-A--TTT-TTTTTG-TCGCGC-----------------------------------------------------------TAAGTGTATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAA--CAACAAATAA-------------------------------------------
droMoj3 scaffold_6680:4316895-4317054 - dmo-mir-219 Known_mirbase CCA----GTGGC-TAAAAGCT-TTCA-------AG-----TG----------------------------TCTA------------------AATACAAACATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAA-AGCCAAA-------------------------------------------------------
droGri2 scaffold_15110:13121791-13121945 + dgr-mir-219 Known_mirbase CCT----G-------AAAGCTTTTTG-CCATGA-------------------------------------------------------------ACTTAACAAACA-TTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAA--ACAC-------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
CCA----GGATG-GAAAAGCT-TGCG-CCGCGAAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCACCACTAA-AGTGTACAT----TTT--------ATT-----GAAACGAAATSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................2311017.00101794471410510
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................211333.00333252513003924
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.......................................................................................221199.00199802211131450
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................221155.001551281200240
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................22144.004444000000
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................20141.004130210080
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................19112.00128000040
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................20110.001010000000
....................................................................................................................................GATTGTCCAAACGCAATTCTT................................................................................................................................2119.0099000000
...........................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC........................................................................................2219.0090001260
......................................................................................................................................TTGTCCAAACGCAATTCTTG...............................................................................................................................2018.0082000060
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC........................................................................................2117.0070310030
.....................................................................................................................................ATTGTCCAAACGCAATTCTTG...............................................................................................................................2117.0077000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................2415.0051020020
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGT......................................................................................2314.0040001120
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..............................................................................................................................2413.0033000000
.....................................................................................................................................ATTGTCCAAACGCAATTCTTGT..............................................................................................................................2213.0031000020
...................................................................................................................................TGATTGTCCAAACGCAATTCTTA...............................................................................................................................2313.0032000010
...................................................................................................................................TGATTGTCCAAACGCAATTCTTT...............................................................................................................................2312.0021000010
....................................................................................................................................GATTGTCCAAACGCAATTC..................................................................................................................................1911.0011000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTG................................................................................................................................2211.0011000000
...................................................................................................................................TGATTGTCCAAACGCAATTCG.................................................................................................................................2111.0011000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCT.......................................................................................2211.0010000010
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGAA.............................................................................................................................2511.0011000000
..................................................................................................................................ATGATTGTCCAAACGCAATTCT.................................................................................................................................2211.0011000000
...................................................................................................................................TGATTGTCCAAACGCAATTCA.................................................................................................................................2111.0011000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTA................................................................................................................................2211.0011000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGG..............................................................................................................................2411.0011000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCG.........................................................................................2011.0010000010
droYak3
CCA----GGATG-AAAAAGCT-TGCG-CCGCGAAGCGAAGCG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCACCACTAA-AGTGAACTT----TTT--------ATC-----GAAACGAAATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................231987.009871192521271650000
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................211240.0024015204607800000
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................221162.001621149404400000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.......................................................................................221153.0015314124821163650010
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................20179.00792250002320000
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................22158.0058058000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC........................................................................................21119.0019601120000000
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................19113.001309100200010
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................20110.0010010000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................2419.00903001410000
....................................................................................................................................GATTGTCCAAACGCAATTCTT................................................................................................................................2119.00909000000000
...........................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC........................................................................................2218.00830320000000
.......................................................................................................................................TGTCCAAACGCAATTCTTG...............................................................................................................................1916.00606000000000
.....................................................................................................................................ATTGTCCAAACGCAATTCTTG...............................................................................................................................2115.00505000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATC..........................................................................................1915.00550000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCC.................................................................................................................................2114.00420200000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGT......................................................................................2313.00300110100000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCG.........................................................................................2013.00310200000000
..................................................................................................................................ATGATTGTCCAAACGCAATTCT.................................................................................................................................2213.00303000000000
........................................................................................................................................GTCCAAACGCAATTCTTG...............................................................................................................................1812.00211000000000
......................................................................................................................................TTGTCCAAACGCAATTCTTG...............................................................................................................................2011.00101000000000
....................................................................................................................................GATTGTCCAAACGCAATTCTTGT..............................................................................................................................2311.00100010000000
...................................................................................................................................TGATTGTCCAAACGCAATTT..................................................................................................................................2011.00100001000000
...................................................................................................................................TGATTGTCCAAACGCAAA....................................................................................................................................1811.00110000000000
..................................................................................................................................ATGATTGTCCAAACGCAATTCTT................................................................................................................................2311.00101000000000
...............................................................................................................................................................................GTTGCGACTGGGCATCGCG.......................................................................................1911.00110000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTC................................................................................................................................2211.00101000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTGC...............................................................................................................................2311.00101000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..............................................................................................................................2411.00101000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGT........................................................................................2111.00100100000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGC..............................................................................................................................2411.00101000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGA......................................................................................2311.00110000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTT...............................................................................................................................2311.00101000000000
..................................................................................................................................ATGATTGTCCAAACGCAATTCTTG...............................................................................................................................2411.00101000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGTT.....................................................................................2411.00110000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCAC...........................................................................................1811.00100100000000
...................................................................................................................................TGATTGTCCAAACGCAAAA...................................................................................................................................1940.25101000000000
droSec2
CCA----GGATG-AAAAAGCT-TGCG-CCGCGGAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCACCACTGT-AGTGAACT-----TTT--------ATT-----GAAACGAAATSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................211353.003533223028
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................231298.002982710423
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.......................................................................................221135.001355157243
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................221121.001211063012
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................20130.003026004
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................22114.001414000
...........................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC........................................................................................22114.001400122
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................19113.001330010
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................2017.0077000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGT......................................................................................2316.0060051
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGA......................................................................................2313.0030012
......................................................................................................................................TTGTCCAAACGCAATTCTTG...............................................................................................................................2013.0030003
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC........................................................................................2113.0030012
....................................................................................................................................GATTGTCCAAACGCAATTCTT................................................................................................................................2112.0022000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................2412.0020002
......................................................................................................................................TTGTCCAAACGCAATTCTTGA..............................................................................................................................2111.0010001
.......................................................................................................................................TGTCCAAACGCAATTCTTG...............................................................................................................................1911.0010001
...................................................................................................................................TGATTGTCCAAACGCAATTCTA................................................................................................................................2211.0011000
.....................................................................................................................................ATTGTCCAAACGCAATTCTTG...............................................................................................................................2111.0011000
......................................................................................................................................TTGTCCAAACGCAATTCT.................................................................................................................................1811.0011000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCT.......................................................................................2211.0010001
.....................................................................................................................................ATTGTCCAAACGCAATTCT.................................................................................................................................1911.0010001
..............................................................................................................................................................................GGTTGCGACTGGGCATCGCG.......................................................................................2011.0010001
...................................................................................................................................TGATTGTCCAAACGCAATTCG.................................................................................................................................2111.0011000
.....................................................................................................................................ATTGTCCAAACGCAATTCTTT...............................................................................................................................2111.0011000
.....................................................................................................................................ATTGTCCAAACGCAATTC..................................................................................................................................1811.0011000
droSim2
CCA----GGATG-AAAAAGCT-TGCG-CCGCGGAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCACCACTGA-AGTGAACT-----TTT--------ATT-----GAAACGAAATSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................2112637.0026372991204394217901200007000
...................................................................................................................................TGATTGTCCAAACGCAAT....................................................................................................................................1811679.0016798000127154400000000000
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................2011631.0016311010293113554300000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................231733.00733120417755845401000211000
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................221336.003362300212227000000000000
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................191104.001042200057700000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.......................................................................................22179.007923025000010002811000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................24141.00410000113000000000000
......................................................................................................................................TTGTCCAAACGCAATTCTTG...............................................................................................................................20119.0019171100000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC........................................................................................21115.001590500000000100000
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................22115.001500025800000000000
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................20114.0014000001400000000000
.....................................................................................................................................ATTGTCCAAACGCAATTCTTG...............................................................................................................................21113.0013111010000000000000
.......................................................................................................................................TGTCCAAACGCAATTCTTG...............................................................................................................................1918.00830000500000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATC..........................................................................................1917.00750200000000000000
....................................................................................................................................GATTGTCCAAACGCAATTC..................................................................................................................................1917.00700000700000000000
........................................................................................................................................GTCCAAACGCAATTCTTG...............................................................................................................................1816.00650100000000000000
.......................................................................................................................................TGTCCAAACGCAATTCTT................................................................................................................................1816.00600000600000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGA......................................................................................2315.00550000000000000000
...........................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC........................................................................................2214.00430100000000000000
..................................................................................................................................ATGATTGTCCAAACGCAAT....................................................................................................................................1914.00400000400000000000
......................................................................................................................................TTGTCCAAACGCAATTCTT................................................................................................................................1912.00200002000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGTT.............................................................................................................................2512.00200000200000000000
.....................................................................................................................................ATTGTCCAAACGCAATTC..................................................................................................................................1812.00210000100000000000
...................................................................................................................................TGATTGTCCAAACGCA......................................................................................................................................1612.00200000000020000000
...................................................................................................................................TGATTGTCCAAACGCAATTCC.................................................................................................................................2112.00220000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCG.................................................................................................................................2112.00220000000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCG.........................................................................................2012.00220000000000000000
.....................................................................................................................................ATTGTCCAAACGCAATTCT.................................................................................................................................1911.00110000000000000000
....................................................................................................................................GATTGTCCAAACGCAATT...................................................................................................................................1811.00100000100000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGC..............................................................................................................................2411.00100010000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTT..................................................................................................................................2011.00110000000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGC......................................................................................2311.00110000000000000000
....................................................................................................................................GATTGTCCAAACGCA......................................................................................................................................1511.00100000001000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTG................................................................................................................................2211.00100010000000000000
.......................................................................................................................................TGTCCAAACGCAATTCTTGT..............................................................................................................................2011.00100000100000000000
...................................................................................................................................TGATTGTCCAAACGCAATTTG.................................................................................................................................2111.00100010000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGT......................................................................................2311.00100000000000100000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGG......................................................................................2311.00110000000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCAT...........................................................................................1811.00100000100000000000
...................................................................................................................................TGATTGTCCAAACGC.......................................................................................................................................1511.00100000000001000000
.................................................................................................................................TATGATTGTCCAAACGCAATTCTTG...............................................................................................................................2511.00100010000000000000
...........................................................................................................TTTGGTTAATTCGAT...............................................................................................................................................................1520.50100000000010000000
dm3
CCA----GGATG-AAATAGCT-TGCG-CCGCGGAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCACCACTGA-AGTGAACT-----TTT--------ATT-----GAAACGAAATSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................21126557.0026557000012660012241020019000100002283896411945500000000000000000000003000000000000000000023343539017700027133846281307641497414929873840190231816101481129366842214020918069947486538000000000000000000000000000000000000196822460116723563129940101631246133123500000017930000000000000000000000000000000000100070000000010016000010160500000500000000000000000000000000008101130001000000010110000000000000000012301000000062
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................23119837.00198370000230010102004103900001000301131552341245027270000000000100000000000310000000000000000000000462702517200046109311154827146196727001016196180240133111160461568138959339248000000000000000000001000000000000000110010890712783653826961672460123441588701630000013890000000000000000000000000000031000000040000000014150120000380500000310000000000000000000000000000118020101000000030341000000000000000114210110000024
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................2218633.00863300003310101001010002000000004143550862922000000000000000000000012100000000000000000010099100200000216711335914531026975100090711411202250104802011111224681861670000000000000000000000000000000000007926360594241896903554815303247710000005290000000000000000000000000000000000000020000000000002000012010000060000000000000000000000000000333150030010000200000000000000000000200000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.......................................................................................2211753.001753000000010300000000000000000100000000000000001000000000000000000000000000000000000110011000020243012147180000000011000019413041406036000000000013300000000000000000000000201401201322111702602840000011500000000010000000000000000000000000001200000000286101350000913060000012000000000000000030000010000086874671133622410020000331434200001000000000001129120191516000000
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................201872.00872000021000000001001000000000075104911200000000000000000000000000000000000000000000101300020000006001832000111710000000000000510001300248111200000000000000000000000000000000000022380102041076110821030400000350000000000000000000000000000001000000000000000001000000041200000000000000000000000000000000000021140000010000000000000000000000000400000000000
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................191587.0058700000000000000000000000000011462523120000000000000000000000100000000000000000000000110000000007001001000041000001000100001210001000201114110000000000000000000000000000000000003050017111725726175526280000047000000000000000000000000000000000000000000000000000100001203000003000000000000000000000000000010020000010000000000000000000000000200000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................241325.00325000011000100000000000000000010413512000000000000000000000010000000000000000000000000000000000200200000020000000010000010000100010081300000000000000000000000000000000000026200170053804231301600000015000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000021010010000000000000000000000000000000000000000
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................221283.0028300000000000000000000000000001226280000000000000000000000000000000000000000000000001000000000000030000009000000000000000000000006155000000000000000000000000000000000000232107305342292712530000033000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................201142.001420000000000000000000000000000008140100000000000000000000000000000000000000000000000000000000000010000002000000000000004000000003112000000000000000000000000000000000000161403004160801301900000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTT...............................................................................................................................231111.00111000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010030000001000000000000101000000003121321000000000000000000000000000000000000870300140601000000004000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCG.................................................................................................................................21184.008400001000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000100200000000000000000000000000000000000002020002000280401000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GATTGTCCAAACGCAATTCTT................................................................................................................................21169.0069000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000002011000000000000000000000000000000000000143013001130206060000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGT......................................................................................23153.0053000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000003000000000000001000001000000000000000000000000000000000000000000100000010000053000000000000000000000000000000000000000000000000000000200000001000000000000000000000000000000000000044450210000000001100000000000000001911000000000
...................................................................................................................................TGATTGTCCAAACGCAAT....................................................................................................................................18144.0044000000000000000000000000000160204100000000000000000000000000000000000000000000000000000000010021000004000000100000000000000000100000000000000000000000000000000000000000021000280020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000120000000000000000000000000000000100000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..............................................................................................................................24143.00430000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000200000050000000000000010000000010010000000000000000000000000000000000002603000004040200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011
...................................................................................................................................TGATTGTCCAAACGCAATTCA.................................................................................................................................21141.00410000200000000000000000000000000000000000000000000000000000000000000000000000000050000000000120000000001000400000000001000000000000000000000000000000000000000000000000230200100001060000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCC.................................................................................................................................21141.0041000030000002000000000000000000000000000000000000000000000000000000000000000000000000000010040020000007000000000000001000000001000000000000000000000000000000000000000210200210201050000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................ATTGTCCAAACGCAATTCTTG...............................................................................................................................21132.0032000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000000000000000000000000000000000000000000000230211051305110000002000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTA...............................................................................................................................23132.0032000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000010010000001000000000000000000000000020000000000000000000000000000000000000110200141401140000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTC................................................................................................................................22130.00300000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000003003001002000100000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC........................................................................................21127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110000000000000000010003000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001200000000001000001000000000000000000100000000000100300000000000100000000000000000521000000000
...........................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC........................................................................................22127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000100000000000000001100000000000000000000000000000000000000000000020100511000000101000000000000000000900000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGATC....................................................................................25124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TTGTCCAAACGCAATTCTTG...............................................................................................................................20123.0023000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000003000000000000001000000000000000000000000000000000000000000000000030000050302010000002000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTC...............................................................................................................................23118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000400400210001001000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATGATTGTCCAAACGCAATTCT.................................................................................................................................22116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000020100018000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TGTCCAAACGCAATTCTTG...............................................................................................................................19115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010040000000000000000000000000000001002000000000000000000000000000000000000000000010102020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTG................................................................................................................................22114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000200000000000000000000000000000000000000000000000000110000000105020000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTT..................................................................................................................................20114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000002001000000000000000000000000000000000000110100030200010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
AGC---TGGATG-AAAAAGCT-TTTG-CTGCGTAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAGCCAAA--TCATCATTGA-AGTGCATTG----TAAACTGAAAA--TAATTTA-TA-TTAATSizeHit CountTotal NormTotal
No Reads
droBia1
CCC----GGATA-CAAAAGCT-TTCG-CCGCGGAG-----CG--------------------------------------------------AAACAAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCGTGAATCA-AGTGCATTA----TTTATCGAAAT--ATAC-----CACAGATSizeHit CountTotal NormTotal
No Reads
droTak1
CCAAGCCGGATG-AAAAAGCT-TTCG-CTTCGGAG-----TG--------------------------------------------------AGAATATATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAA--TCTTAAACCC-AGTGCATTA----TAGATTGGAAT--AAAT------TGAAACSizeHit CountTotal NormTotal
No Reads
droEle1
CCA----AGATGGAAAAAGCT-ATCG-CTGCGGAG-----CG--------------------------------------------------AAAATAAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAT--TCATTTATAA-ACTGCATTA----TACGCCGTATT--AAAT----AATAAAAASizeHit CountTotal NormTotal
No Reads
droRho1
CG-----GGATG-GAAAAGCT-ATCG-CTGCGAAG-----CG--------------------------------------------------AAAATAAATATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAA--TCATCAATAA-AGTGCTTTA----TAAA---------------------TAAASizeHit CountTotal NormTotal
No Reads
droFic1
AC-----GGATC-GAAAAGCT-TTCG-CTGCGGAG-----TG-----------------------------C--------------------AAAATAAACAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAG--TCATTA-TCA-TGTGCATTA----T-------------------AATCGGAATSizeHit CountTotal NormTotal
No Reads
droKik1
CCA----GGAGG---AAAGCT-AC-------------------------------------------------------------------------ATAGTTATA-CTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAT-T-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACGACTCGGCAACCAA--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TGG----AGCTG-AGAAAACTTTTCG-CAGTGACC-----TG--------------------------------------------------AAAAAC--AAAATATTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAAC-------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................231162.001621172015226
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................211114.00114674013129
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.......................................................................................22186.008681016259
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................20154.00543140739
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................22141.004123104112
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................19112.0012200118
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................24111.0011100406
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................2216.006600000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC........................................................................................2116.006210003
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................2014.004400000
...........................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC........................................................................................2214.004010003
....................................................................................................................................GATTGTCCAAACGCAATTC..................................................................................................................................1914.004300001
....................................................................................................................................GATTGTCCAAACGCAATTCTT................................................................................................................................2113.003300000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCG.........................................................................................2012.002200000
...................................................................................................................................TGATTGTCCAAACGCAATTT..................................................................................................................................2012.002100001
.....................................................................................................................................ATTGTCCAAACGCAATTCTTG...............................................................................................................................2112.002200000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..............................................................................................................................2411.001100000
............................................................................................................................................................................AGGGTTGCGACTGGGCATC..........................................................................................1911.001010000
...................................................................................................................................TGATTGTCCAAACGCAATTCTC................................................................................................................................2211.001010000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTTG..............................................................................................................................2411.001100000
...................................................................................................................................TGATTGTCCAAACGCAATTCTG................................................................................................................................2211.001100000
.............................................................................................................................................................................GGGTTGCGACTGGGCATCGCG.......................................................................................2111.001100000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGG..............................................................................................................................2411.001100000
droBip1
AGT----AGA-G-AAAACTT--TTCAGCAGTGACC-----TG--------------------------------------------------AAAAACAAAATATT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACAAAGAAAACCAT--TTAAACATGT------ATATTCC-CTT--------ATG-----G-----AAACSizeHit CountTotal NormTotal
No Reads
dp5
C------AGATA-TAAAAGCT-TTCA-GTTCTCAG-----CTCTCAGCTCTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATC--AGTATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAA--AT----------------------CTA--------ATT-----TAAACGTACTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................231894.0089408427224130024
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................211493.00493031421630120020
............................................................................................................................................................................AGGGTTGTGACTGGACATCGCG.......................................................................................221185.001851171732018304102
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................221169.001690127035070000
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................201138.00138097133070000
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................22160.006006000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCC.................................................................................................................................21131.003100130000000
............................................................................................................................................................................AGGGTTGTGACTGGACATCGC........................................................................................21123.002300404300012
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................20118.001801800000000
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................19116.001601105000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................24113.00130504040000
....................................................................................................................................GATTGTCCAAACGCAATTCTT................................................................................................................................2118.0080800000000
...........................................................................................................................................................................AAGGGTTGTGACTGGACATCGC........................................................................................2218.0080020300003
....................................................................................................................................GATTGTCCAAACGCAATTC..................................................................................................................................1916.0060600000000
...................................................................................................................................TGATTGTCCAAACGCAATTT..................................................................................................................................2014.0040301000000
............................................................................................................................................................................AGGGTTGTGACTGGACATCGCGT......................................................................................2313.0030010101000
.............................................................................................................................................................................GGGTTGTGACTGGACATCGCG.......................................................................................2113.0030300000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGC..............................................................................................................................2413.0030003000000
.......................................................................................................................................TGTCCAAACGCAATTCTTG...............................................................................................................................1913.0030200100000
...................................................................................................................................TGATTGTCCAAACGCAATTCTC................................................................................................................................2213.0030003000000
......................................................................................................................................TTGTCCAAACGCAATTCTT................................................................................................................................1912.0020101000000
............................................................................................................................................................................AGGGTTGTGACTGGACATCG.........................................................................................2012.0020100010000
....................................................................................................................................GATTGTCCAAACGCAATTCTTGT..............................................................................................................................2311.0010100000000
............................................................................................................................................................................AGGGTTGTGACTGGACATC..........................................................................................1911.0010010000000
......................................................................................................................................TTGTCCAAACGCAATTCTTG...............................................................................................................................2011.0010100000000
...................................................................................................................................TGATTGTCCAAACGCAATTCA.................................................................................................................................2111.0010100000000
..................................................................................................................................ATGATTGTCCAAACGCAATTCTTG...............................................................................................................................2411.0010100000000
............................................................................................................................................................................AGGGTTGTGACTGGACATCGCGG......................................................................................2311.0010000000001
....................................................................................................................................GATTGTCCAAACGCAATTCTTT...............................................................................................................................2211.0010100000000
............................................................................................................................................................................AGGGTTGTGACTGGACATCGCC.......................................................................................2211.0010000010000
...................................................................................................................................TGATTGTCCAAACGCAATTCTCC...............................................................................................................................2311.0010010000000
.....................................................................................................................................ATTGTCCAAACGCAATTCT.................................................................................................................................1911.0010001000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGTA.............................................................................................................................2511.0010100000000
......................................................................................................................................TTGTCCAAACGCAATTCT.................................................................................................................................1811.0010001000000
.....................................................................................................................................ATTGTCCAAACGCAATTCTTG...............................................................................................................................2111.0010100000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..............................................................................................................................2411.0010100000000
droPer2
C------AGATA-TAAAAGCT-TTCA-GTTCTCAG-----CT-------CTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATC--AGTATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAA--AT----------------------CTA--------ATT-----TAAGCGTACTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................231191.001912148120200
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................21196.009606509220
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................22164.006404604140
............................................................................................................................................................................AGGGTTGTGACTGGACATCGCG.......................................................................................22163.0063162414243
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................20118.00180100260
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................2419.009030150
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................2219.009090000
............................................................................................................................................................................AGGGTTGTGACTGGACATCGC........................................................................................2117.007001330
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................1917.007040120
...........................................................................................................................................................................AAGGGTTGTGACTGGACATCGC........................................................................................2215.005300020
.......................................................................................................................................TGTCCAAACGCAATTCTTG...............................................................................................................................1914.004022000
........................................................................................................................................GTCCAAACGCAATTCTTG...............................................................................................................................1813.003300000
............................................................................................................................................................................AGGGTTGTGACTGGACATC..........................................................................................1912.002100100
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................2012.002020000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTT...............................................................................................................................2312.002010100
............................................................................................................................................................................AGGGTTGTGACTGGACATCGCT.......................................................................................2212.002000020
..................................................................................................................................ATGATTGTCCAAACGCAATTCT.................................................................................................................................2211.001010000
....................................................................................................................................GATTGTCCAAACGCAATTCTT................................................................................................................................2111.001010000
....................................................................................................................................GATTGTCCAAACGCAATTC..................................................................................................................................1911.001010000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTC...............................................................................................................................2311.001000010
.......................................................................................................................................................................ACTCAAGGGTTGTGACTGGA..............................................................................................2011.001000010
......................................................................................................................................TTGTCCAAACGCAATTCTTG...............................................................................................................................2011.001000100
droWil2
-----------------------------------------G--------------------------------------------------AAAACA---AAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA-CCCAATAACCAAAGTGAAACATTGTAA----ATATTCATTTA--------ATT----TG-TAATAAATSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................231486.004864537811448
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................211351.00351552690027
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................201263.00263169781114
............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCG.......................................................................................221176.00176182211341
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................22188.00887680112
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................19128.0028319006
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................22125.0025025000
............................................................................................................................................................................AGGGTTGCATCTGGGCATCGC........................................................................................21121.0021101154
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................20116.0016016000
...........................................................................................................................................................................AAGGGTTGCATCTGGGCATCGC........................................................................................22112.001240053
.....................................................................................................................................ATTGTCCAAACGCAATTCTTG...............................................................................................................................21110.001036001
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................2417.00701015
....................................................................................................................................GATTGTCCAAACGCAATTC..................................................................................................................................1915.00505000
......................................................................................................................................TTGTCCAAACGCAATTCTTG...............................................................................................................................2014.00420002
............................................................................................................................................................................AGGGTTGCATCTGGGCATCG.........................................................................................2014.00421001
........................................................................................................................................GTCCAAACGCAATTCTTG...............................................................................................................................1814.00421001
.......................................................................................................................................TGTCCAAACGCAATTCTTG...............................................................................................................................1914.00411002
............................................................................................................................................................................AGGGTTGCATCTGGGCATC..........................................................................................1914.00400004
...................................................................................................................................TGATTGTCCAAACGCAATTCC.................................................................................................................................2112.00220000
.....................................................................................................................................ATTGTCCAAACGCAATTCT.................................................................................................................................1911.00101000
...................................................................................................................................TGATTGTCCAAACGCAATTT..................................................................................................................................2011.00100001
...................................................................................................................................TGATTGTCCAAACGCAAT....................................................................................................................................1811.00110000
...................................................................................................................................TGATTGTCCAAACGCAATTCG.................................................................................................................................2111.00100001
............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCT.......................................................................................2211.00110000
....................................................................................................................................GATTGTCCAAACGCAATTCTC................................................................................................................................2111.00101000
..................................................................................................................................ATGATTGTCCAAACGCAATTCT.................................................................................................................................2211.00101000
....................................................................................................................................GATTGTCCAAACGCAATT...................................................................................................................................1811.00101000
.............................................................................................................................................................................GGGTTGCATCTGGGCATCGCG.......................................................................................2111.00100010
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGG..............................................................................................................................2411.00101000
.....................................................................................................................................ATTGTCCAAACGCAATTCTT................................................................................................................................2011.00101000
...................................................................................................................................TGATTGTCCAAACGCAATTCA.................................................................................................................................2111.00100001
...................................................................................................................................TGATTGTCCAAACGCAATTA..................................................................................................................................2011.00100001
............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCGT......................................................................................2311.00100010
..............................................................................................................................................................................GGTTGCATCTGGGCATCGCG.......................................................................................2011.00101000
..................................................................................................................................ATGATTGTCCAAACGCAATTCTTG...............................................................................................................................2411.00101000
droVir3
AAA-GCC--ATT-A--TTT-TTTTTG-TCGCGC-----------------------------------------------------------TAAGTGTATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAA--CAACAAATAA-------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................2311947.00194706841800000000002671195615955660142187010002247000011000000000000000000010313100001004000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................2111553.001553114393200000000002621138315989600202152000000000000000000000000000000000011017000000003000001000
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................221857.00857021671000000000016472416658440117109000001102000000000000000000000000000012000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................201216.00216450821000000000018126426091100000000000000000000000000000000000004000000007000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.......................................................................................221126.00126251190000000000111147211880000000000000000000000000000000000121720500000000000010000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................24187.00870020000000000022103966091600000000000000000000000000000000000004000000000000000000
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................22161.006101590000000000010000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................19143.004301170000000000056031102100000000000000000000000000000000000006000000000000000000
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................20120.002000200000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GATTGTCCAAACGCAATTCTT................................................................................................................................21117.001700160000000000000001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTT...............................................................................................................................23116.00160020000000000040002105200000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TGTCCAAACGCAATTCTTG...............................................................................................................................1917.0070021000000000021010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TGTCCAAACGCAATTCTT................................................................................................................................1816.0060010000000000001120000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATC..........................................................................................1916.0060600000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GATTGTCCAAACGCAATTC..................................................................................................................................1914.0040130000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC........................................................................................2213.0031001000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................ATTGTCCAAACGCAATTCT.................................................................................................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..............................................................................................................................2413.0030000000000000020000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATGATTGTCCAAACGCAATTCTTG...............................................................................................................................2413.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCG.................................................................................................................................2112.0020000000000000001000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................TTGTCCAAACGCAATTCT.................................................................................................................................1812.0020000000000000010001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATTGTCCAAACGCAATTCTTG...............................................................................................................................2112.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGG......................................................................................2312.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATTGTCCAAACGCAATTCTT................................................................................................................................2012.0020010000000000000100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGC..............................................................................................................................2411.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTC................................................................................................................................2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGTT.............................................................................................................................2511.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCC.......................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTA................................................................................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGA......................................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................GTCCAAACGCAATTCTTG...............................................................................................................................1811.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGG..............................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCC.................................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTG................................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TT-CAAATACTCAAGGGTT.......................................................................................................1811.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTA...............................................................................................................................2311.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAAT....................................................................................................................................1811.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATA...................................................................................................................................1911.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCG.........................................................................................2011.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................GATTGTCCAAACGCAATTCTG................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCA.................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATGATTGTCCAAACGCAATT...................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TGTCCAAACGCAATTCTTC...............................................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTTA..............................................................................................................................2411.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGAAA............................................................................................................................2611.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TTGTCCAAACGCAATTCTTG...............................................................................................................................2011.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGC......................................................................................2311.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGTTC............................................................................................................................2611.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................AAGGGTTGCGACTGGGCATC..........................................................................................2011.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATTGTCCAAACGCAATTCTTGT..............................................................................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATGATTGTCCAAACGCAATTCTT................................................................................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
CCA----GTGGC-TAAAAGCT-TTCA-------AG-----TG----------------------------TCTA------------------AATACAAACATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAA-AGCCAAA-------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................231999.0099993402628110
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................211488.004884351192751
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................221193.00193176041030
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................201110.001109707510
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................22168.00686800000
............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCG.......................................................................................22162.00629967301
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................19122.00221802200
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................20120.00202000000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..............................................................................................................................24112.0012312420
............................................................................................................................................................................AGGGTTGCATCTGGGCATCGC........................................................................................2118.008013040
....................................................................................................................................GATTGTCCAAACGCAATTCTT................................................................................................................................2118.008800000
.....................................................................................................................................ATTGTCCAAACGCAATTCTTG...............................................................................................................................2117.007700000
...................................................................................................................................TGATTGTCCAAACGCAATTCC.................................................................................................................................2115.005000050
......................................................................................................................................TTGTCCAAACGCAATTCTTG...............................................................................................................................2014.004400000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGC..............................................................................................................................2413.003100020
...................................................................................................................................TGATTGTCCAAACGCAATTCTTT...............................................................................................................................2313.003200100
.....................................................................................................................................ATTGTCCAAACGCAATTCTT................................................................................................................................2013.003300000
..................................................................................................................................ATGATTGTCCAAACGCAATTCTTG...............................................................................................................................2413.003300000
...................................................................................................................................TGATTGTCCAAACGCAATTT..................................................................................................................................2012.002200000
....................................................................................................................................GATTGTCCAAACGCAATTC..................................................................................................................................1912.002200000
...................................................................................................................................TGATTGTCCAAACGCAATTCTG................................................................................................................................2212.002200000
............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCGT......................................................................................2311.001000010
.....................................................................................................................................ATTGTCCAAACGCAATTCTTGT..............................................................................................................................2211.001100000
.........................................................................................................................................TCCAAACGCAATTCTTGT..............................................................................................................................1811.001000100
..................................................................................................................................ATGATTGTCCAAACGCAATTCTT................................................................................................................................2311.001100000
.......................................................................................................................................TGTCCAAACGCAATTCTTG...............................................................................................................................1911.001100000
............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCGC......................................................................................2311.001000010
............................................................................................................................................................................AGGGTTGCATCTGGGCATCG.........................................................................................2011.001000100
....................................................................................................................................GATTGTCCAAACGCAATTCTTGG..............................................................................................................................2311.001100000
....................................................................................................................................GATTGTCCAAACGCAATT...................................................................................................................................1811.001100000
........................................................................................................................................GTCCAAACGCAATTCTTG...............................................................................................................................1811.001100000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGGCA............................................................................................................................2611.001100000
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGGG.............................................................................................................................2511.001100000
droGri2
CCT----G-------AAAGCTTTTTG-CCATGA-------------------------------------------------------------ACTTAACAAACA-TTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAA--ACAC-------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...................................................................................................................................TGATTGTCCAAACGCAATTCTTG...............................................................................................................................23193.0093930
...................................................................................................................................TGATTGTCCAAACGCAATTCT.................................................................................................................................21140.0040400
....................................................................................................................................GATTGTCCAAACGCAATTCTTG...............................................................................................................................22110.0010100
...................................................................................................................................TGATTGTCCAAACGCAATTCTT................................................................................................................................2217.00770
...................................................................................................................................TGATTGTCCAAACGCAATTC..................................................................................................................................2016.00660
............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCG.......................................................................................2213.00303
...................................................................................................................................TGATTGTCCAAACGCAATT...................................................................................................................................1912.00220
....................................................................................................................................GATTGTCCAAACGCAATTCTA................................................................................................................................2111.00110
....................................................................................................................................GATTGTCCAAACGCAATTC..................................................................................................................................1911.00110
....................................................................................................................................GATTGTCCAAACGCAATTCTT................................................................................................................................2111.00110
...................................................................................................................................TGATTGTCCAAACGCAATTCTTGG..............................................................................................................................2411.00110
....................................................................................................................................GATTGTCCAAACGCAATTCT.................................................................................................................................2011.00110

Generated: 10/20/2015 at 07:35 PM