ID:

dan_990

 Coordinate:

scaffold_12947:352237-352387 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_20588:5]; CDS [Dana\GF19015-cds]; intron [Dana\GF19015-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTATTATATAGTCGGGAATATAGTATATAGTAATATAGCCGCTTTTATATTTTTAAGGAATATGAAAAAAAAAAGAAAAATTTTTTTAGTTTTAAAAACTGTATGGGTATTTGAACTTGGTCTTTGACTAAAGTTAGCTATCCTGATATTTTTTAGTGTAGCTAAAAAATGCAATTAACTCGGTTTTTCGAATTTTATAGCTCTTTTCGCTGAAATTACTAGAATTCTAAATCATATAATGGCTGTGGGC
**************************************************........((((.(((((((............(((((((((((((((((.(((..(((((.((((..((((((...))))))..)))).)))))..))).)))))))...))))))))))..............))))))).)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body
..............................................................................AAATTTTTTTAGTGTTAAAA......................................................................................................................................................... 20 1 2 2.00 4 4 0 0 0
..................................................................................................................................................................................................................................TCTAAATCATATAATGGCTGTGGGC 25 0 1 2.00 2 0 2 0 0
...................................................................................................................................................................................................................................CTAAATCATATAATGGCTGT.... 20 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................ATTACTAGAATTCTAAATCA................ 20 0 1 1.00 1 0 1 0 0
...................................................................................................................................................................................................................................CTAAATCATATAATGGCTGTGGGC 24 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................CTGAAATTACTAGAATTCT...................... 19 0 1 1.00 1 0 1 0 0
..................................................................................................................................................................................................................................TCTAAATCATATAATGGCTGTG... 22 0 1 1.00 1 0 1 0 0
...........................................................................................................................................................................................................CTTTTCGCTGAAATTACTAGAATTCTA..................... 27 0 1 1.00 1 0 1 0 0
............................................................................................................................................................................................................TTTTCGCTGAAATTACTAGAA.......................... 21 0 1 1.00 1 0 1 0 0
.................................................................................................................................................GATATTTTTTAGTGTCGCTAAAA................................................................................... 23 1 1 1.00 1 0 0 0 1
..............................................................................AAATTTTTTTAGTGTTAAAAA........................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................................CATATAATGGCTGTGGGC 18 0 1 1.00 1 1 0 0 0
..............................................................................AAATTTTTTTAGTGTTAAA.......................................................................................................................................................... 19 1 3 0.67 2 1 0 1 0
..............................................................................AAATTTTTTTAGTGTTAGAA......................................................................................................................................................... 20 2 18 0.56 10 9 0 1 0
..............................................................................AAATTTTTTTAGTTTTCAAAA........................................................................................................................................................ 21 1 2 0.50 1 0 0 1 0
...............................................................................AATTTTTTTAGTGTTAAAAA........................................................................................................................................................ 20 1 2 0.50 1 1 0 0 0
..........................................................................AGATAAATTTTTTTAGTGTTAA........................................................................................................................................................... 22 2 3 0.33 1 1 0 0 0
..............................................................................AAATTTTTTTAGTGTTAAACA........................................................................................................................................................ 21 2 3 0.33 1 1 0 0 0
..............................................................................AAATTTTTTTAGTGTTACAAA........................................................................................................................................................ 21 2 3 0.33 1 0 0 1 0
...............................................................................AATTTTTTTAGTGTTAGAAA........................................................................................................................................................ 20 2 10 0.30 3 1 0 2 0
..............................................................................AAATTTTTTTAGTGTTAGAAA........................................................................................................................................................ 21 2 4 0.25 1 1 0 0 0
..............................................................................AAATTTTTTTAGTGTTAAAAAA....................................................................................................................................................... 22 2 9 0.22 2 2 0 0 0
..............................................................................AAATTTTTTTAGTGTTACA.......................................................................................................................................................... 19 2 20 0.20 4 4 0 0 0
................................................................................ATTTTTTTAGTGTTAAAAA........................................................................................................................................................ 19 1 6 0.17 1 1 0 0 0
.........................................................................................................................................................................................................................................GATATCATGGCTGTGGGC 18 2 6 0.17 1 0 1 0 0
......................................................................................................TATGGGCATCTGAACTGGGT................................................................................................................................. 20 3 7 0.14 1 0 1 0 0
............................................................................AGAAATTTTTTTAGTGTTAAA.......................................................................................................................................................... 21 2 7 0.14 1 1 0 0 0
..............................................................................AAATTTTTTTAGTGTTAACA......................................................................................................................................................... 20 2 18 0.11 2 1 0 1 0
...............................................................................AATTTTTTTAGTGTTAACAA........................................................................................................................................................ 20 2 9 0.11 1 1 0 0 0
..............................................................................AAATTTTTTTAGTGTAAAAAA........................................................................................................................................................ 21 2 9 0.11 1 1 0 0 0
...............................................................................AATTTTTTTAGTGTTAAAAAA....................................................................................................................................................... 21 2 20 0.10 2 2 0 0 0
..............................................................................AAATTTTTTTAGTGTAAAAA......................................................................................................................................................... 20 2 20 0.10 2 0 0 2 0
..............................................................................AAATTTTTTTAGTGTTAAC.......................................................................................................................................................... 19 2 20 0.10 2 2 0 0 0
...............................................................................AATTTTTTTAGTGTCAAAAA........................................................................................................................................................ 20 2 12 0.08 1 1 0 0 0
............................................................ATATGAACAAAAAAAGAAAGA.......................................................................................................................................................................... 21 2 17 0.06 1 0 0 0 1
..............................................................................AAATTTTTTTAGTGTTAACCA........................................................................................................................................................ 21 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

ACATAATATATCAGCCCTTATATCATATATCATTATATCGGCGAAAATATAAAAATTCCTTATACTTTTTTTTTTCTTTTTAAAAAAATCAAAATTTTTGACATACCCATAAACTTGAACCAGAAACTGATTTCAATCGATAGGACTATAAAAAATCACATCGATTTTTTACGTTAATTGAGCCAAAAAGCTTAAAATATCGAGAAAAGCGACTTTAATGATCTTAAGATTTAGTATATTACCGACACCCG
**************************************************........((((.(((((((............(((((((((((((((((.(((..(((((.((((..((((((...))))))..)))).)))))..))).)))))))...))))))))))..............))))))).)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V055
head
 M044
female body
 V039
embryo
 V106
head
........................................................................................................................................................................................................CGATAAAATCGACTTTAAGGA.............................. 21 3 4 0.25 1 0 0 1 0 0
..................................................AAAAATTCCTTATCCTTT....................................................................................................................................................................................... 18 1 5 0.20 1 1 0 0 0 0
...................................................................................AAAAATCAAAATTTTTGAAA.................................................................................................................................................... 20 1 6 0.17 1 1 0 0 0 0
...................................TATCGGCGAACATAGAATAAT................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0 0 0
.........................................................................................................................AGAAACATAATTCAATCGATA............................................................................................................. 21 3 10 0.10 1 0 0 0 1 0
.........................................................................................................................................................................TACGTTAAATGAGTCAATAAG............................................................. 21 3 10 0.10 1 0 0 0 0 1
............................................................................................................................................................................................AGCTTCGAATATCGAGAGAA........................................... 20 3 11 0.09 1 0 1 0 0 0
............................................................................................................................................................................................................................ATCTTTAGATTTGGTATA............. 18 2 20 0.05 1 0 0 0 1 0
........................................................................................................ACCCATGAACTTAAATCAG................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12947:352187-352437 - dan_990 TGTAT-TATATAGTCGGGAATATAGTATATAGT------------AATATA----------GCCGCTT----------TTAT------ATTTTTA----------AGGAATAT--------------------------GAAAAAAAAAAGAAAAATTTTT----------------------TTAGTT--------TTAAAAACTGTATGGGTATTTGAACTTGGTCTTTGACTAAAGTTAGCTATCCTGATATTTTTTAGTGTAGCTAAAAAATGCAATTAAC--------------------------TCGGTTTTTCGAA-------TTTTATAGCTCTTTTCGCTGAAATTACTAGAATTCTAAATCATATAATGGCTGTGGG-----------------------------------C
droBip1 scf7180000396735:393668-393829 + TATAACTGAACGATCGGAAA--TGGTTTTTAGT------AG-----GAATA----------TCAACTT----------TCGT------ATTTTTG----------AAGA-TAG--GAGCT-----------------------------TGGGACTTTTTT----------------------TTAGGT--------TTT--AACTGCAAAGGTATGTCAACTTCGGCTCCGCCCGAAGTT------------------------------------------------------------------------------------------------AGCTTTTCTTC-----------CTTGTTTTCAGTAAAATTAA-------AA-----------------------------------A
droKik1 scf7180000302590:12050-12167 + TTTAA-TAATTACCCAGA-------------------------AAG-ATTTACTAAACAACGCCGGTA----------AAAC------ATTTTTA----------ATAAATAT--------------TCTTTATGGTGTCAAAAAAAATCGACAAAACTTC----------------------ATATTT--------TTG---------------------------------------------------------------------------------------------------------------------------------CGCGG------------------------------------------T---ACAACTGT-----------------------------------A
droFic1 scf7180000454040:183601-183714 - TTAGT-CAATT----TGA-------------------------TAG--------------------------------------------ATTTAAATGATACTCA--------------------------------------------------------AATATTT----------------ATTTTTAAACTTTGG---------------------------------------------------------------------------------------------------------------------------------ATCGGCACAGCGCTGTTTGCCGAGATTACCCGGATTCTTAACCATATAATGGCTGTCGG-----------------------------------C
droEle1 scf7180000491238:660196-660282 + AGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------------------------------------GAGAATACAACT--T--------------------------TTTGTCT---------TCTGTGCCGCAGCTTTGTTTGCCGAGATTACCCGGATTCTAAACCACATAATGGCTGTTGG-----------------------------------T
droRho1 scf7180000762315:34160-34360 - TAGGA-AGTT-GGAAGTTTTTATA---------AATATTAGGAATGCATCAAATGAAT-----------------------A------ATTTTGA----------AG-AATATAATTTACAGAATATT----------------------------------------------------------------------------CTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTT------------------------------------------------------------------------------------------------AGCTTTCCTTTCTTGTTTTGATTATAATTCCAATTATTTCCTGCCCCTTTAGTTTAGTATTTTGTTTGGAATTAAATCTTAAATTAT
droBia1 scf7180000301899:18027-18145 + CTAAT-TTTTCAATCGTTCCTATA---------GAAGCTATA--TGATATAGTCGTCC-----------------------G------ATTTTGA----------AAAAATTT------------------------------------------------------------------------AATTCGAAATTCAGA---------------------------------------------------------------------------------------------------------------------------------ACTAATAAAAAAATGTTT----------------TTTCCAAGCTTA-GAAGGTTATA-C-----------------------------------G
droTak1 scf7180000414487:6324-6396 - TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--------------------------------------------------------------------------------G---------------------------------------------------AATTTTGTTCATTTCAGCCTTGTTTGCCGAGATTACTCGGATTCTAAACCATATAATGGCTGTCGG-----------------------------------A
droEug1 scf7180000408984:599576-599634 + ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCCCTTTTTGCCGAGATTACTCGAATTCTGAACCATATAATGGCTGTCGG-----------------------------------A
dm3 chr4:589878-589929 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTCTTTGCCGAGATTACTCGTATTCTCAATCACATTATGGCCGTCGG-----------------------------------A
droSim2 4:407194-407245 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTCTTTGCCGAGATTACTCGTATTCTCAATCACATTATGGCCGTCGG-----------------------------------A
droSec2 scaffold_30:312300-312351 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTCTTTGCCGAGATTACTCGTATTCTCAATCACATTATGGCCGTCGG-----------------------------------A
droYak3 4:646762-646862 - AAAAA-AAAA---------------------------------------------------------------------------------------TATTACCTC---------------------T----------------------------------ATGCACT----------------TTTTT--------------------------------------------------------------------------------GAAA-------------------------------------------------ATATTATTTTCTGCAGCTCTTTTTGCTGAGATTACTCGGATTCTGAATCACATTATGGCCGTCGG-----------------------------------A
droEre2 scaffold_4512:684634-684725 + AAA----------------------------------------------------------------------------------------------TAATACCT----------------------T----------------------------------TTGCTGT----------------TTTTT--------------------------------------------------------------------------------T---------------------------------------------------AATATTATTTTCCGCAGCTCTTTTTGCCGAGATTACACGGATCCTGAATCACATTATGGCCGTCGG-----------------------------------A
dp5 Unknown_group_421:8042-8118 + TTT----------------------------------------------------------------------------------------------------------------------------T----------------------------------TTGCATT----------------TCTA------------------------------------------------------------------------------------------------------------------------------------------TATTCGCTGCAGCGCTGTTTGCTGAAATAACACGCATTCTAAACCACATAATGGCTGTAGG-----------------------------------G
droPer2 scaffold_42:315344-315420 + TTT----------------------------------------------------------------------------------------------------------------------------T----------------------------------TTGCATT----------------TCTA------------------------------------------------------------------------------------------------------------------------------------------TATTCGCTGCAGCGCTGTTTGCTGAAATAACACGCATTCTAAACCACATAATGGCTGTAGG-----------------------------------G
droWil2 scf2_1100000004943:1862345-1862396 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTTTGCGGAGATTACACGCATCCTGAACCACATAATGGCAGTGGG-----------------------------------T
droVir3 scaffold_13052:1097512-1097568 + TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGCTCTCTTCGCTGAAATAACGCGCATCCTCAACCACATAATGGCTGTGGG-----------------------------------C
droMoj3 scaffold_6498:1001590-1001647 + TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGCTCTTTTCGCTGAGATAACTCGAATTCTCAATCATATAATGGCTGTTGG-----------------------------------A
droGri2 scaffold_14822:1014558-1014782 - TGATA-TATATA---------------------------------TATATA----------GCTGATTAATTTTTCTTTTCTATTATAATTTTCT----------AA-AAAAAAATTAATTAAACATT-----------------------------TTTTTTGGCACTCAACTGAGTTTTTTTTTGTT--------TTT--ATC-------------------------------------------------------------TCCCAAAAATGAAATATATTTATATATCCTATTCGATTTGTAATCAATGTTT---------ATTGCTTTGCAGCATTGTTTGGCGAAATCACTCGGATTCTGAATCACATAATGGCTATTGG-----------------------------------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TGTAT-TATATAGTCGGGAATATAGTATATAGT------------AATATA----------GCCGCTT----------TTAT------ATTTTTA----------AGGAATAT--------------------------GAAAAAAAAAAGAAAAATTTTT----------------------TTAGTT--------TTAAAAACTGTATGGGTATTTGAACTTGGTCTTTGACTAAAGTTAGCTATCCTGATATTTTTTAGTGTAGCTAAAAAATGCAATTAAC--------------------------TCGGTTTTTCGAA-------TTTTATAGCTCTTTTCGCTGAAATTACTAGAATTCTAAATCATATAATGGCTGTGGG-----------------------------------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................TCTAAATCATATAATGGCTGTGGG-----------------------------------C2512.002200000
.............................................................................................................................................................................................................................................................................................................................................................................CTAAATCATATAATGGCTGT.......................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................ATTACTAGAATTCTAAATCA...................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................CTAAATCATATAATGGCTGTGGG-----------------------------------C2411.001010000
............................................................................................................................................................................................................................................................................................................................................................CTGAAATTACTAGAATTCT.........................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................TCTAAATCATATAATGGCTGTG......................................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................CTTTTCGCTGAAATTACTAGAATTCTA........................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................................TTTTCGCTGAAATTACTAGAA.............................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................CATATAATGGCTGTGGG-----------------------------------C1811.001010000
droBip1
TATAACTGAACGATCGGAAA--TGGTTTTTAGT------AG-----GAATA----------TCAACTT----------TCGT------ATTTTTG----------AAGA-TAG--GAGCT-----------------------------TGGGACTTTTTT----------------------TTAGGT--------TTT--AACTGCAAAGGTATGTCAACTTCGGCTCCGCCCGAAGTT------------------------------------------------------------------------------------------------AGCTTTTCTTC-----------CTTGTTTTCAGTAAAATTAA-------AA-----------------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
TTTAA-TAATTACCCAGA-------------------------AAG-ATTTACTAAACAACGCCGGTA----------AAAC------ATTTTTA----------ATAAATAT--------------TCTTTATGGTGTCAAAAAAAATCGACAAAACTTC----------------------ATATTT--------TTG---------------------------------------------------------------------------------------------------------------------------------CGCGG------------------------------------------T---ACAACTGT-----------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
TTAGT-CAATT----TGA-------------------------TAG--------------------------------------------ATTTAAATGATACTCA--------------------------------------------------------AATATTT----------------ATTTTTAAACTTTGG---------------------------------------------------------------------------------------------------------------------------------ATCGGCACAGCGCTGTTTGCCGAGATTACCCGGATTCTTAACCATATAATGGCTGTCGG-----------------------------------CSizeHit CountTotal NormTotal
No Reads
droEle1
AGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------------------------------------GAGAATACAACT--T--------------------------TTTGTCT---------TCTGTGCCGCAGCTTTGTTTGCCGAGATTACCCGGATTCTAAACCACATAATGGCTGTTGG-----------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
TAGGA-AGTT-GGAAGTTTTTATA---------AATATTAGGAATGCATCAAATGAAT-----------------------A------ATTTTGA----------AG-AATATAATTTACAGAATATT----------------------------------------------------------------------------CTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTT------------------------------------------------------------------------------------------------AGCTTTCCTTTCTTGTTTTGATTATAATTCCAATTATTTCCTGCCCCTTTAGTTTAGTATTTTGTTTGGAATTAAATCTTAAATTATSizeHit CountTotal NormTotal
No Reads
droBia1
CTAAT-TTTTCAATCGTTCCTATA---------GAAGCTATA--TGATATAGTCGTCC-----------------------G------ATTTTGA----------AAAAATTT------------------------------------------------------------------------AATTCGAAATTCAGA---------------------------------------------------------------------------------------------------------------------------------ACTAATAAAAAAATGTTT----------------TTTCCAAGCTTA-GAAGGTTATA-C-----------------------------------GSizeHit CountTotal NormTotal
No Reads
droTak1
TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--------------------------------------------------------------------------------G---------------------------------------------------AATTTTGTTCATTTCAGCCTTGTTTGCCGAGATTACTCGGATTCTAAACCATATAATGGCTGTCGG-----------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCCCTTTTTGCCGAGATTACTCGAATTCTGAACCATATAATGGCTGTCGG-----------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTCTTTGCCGAGATTACTCGTATTCTCAATCACATTATGGCCGTCGG-----------------------------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................CTTTGCCGAGATTACTCGTATT...........................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GAGATTACTCGTATTCTCA.......................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CTCTTTGCCGAGATTACT.................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CTTTGCCGAGATTACTCGTATTCT.........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GATTACTCGTATTCTCAATC....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CAATCACATTATGGCCGTC......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CGAGATTACTCGTATTCTCA.......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TCTCTTTGCCGAGATTAC..................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................ATTCTCAATCACATTATGGCC.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CTCTTTGCCGAGATTACTCGTATTCT.........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CTCTCTTTGCCGAGATTA...................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................GCCGAGATTACTCGTATTC..........................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TCTCAATCACATTATGGCC.........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CTTTGCCGAGATTACTCGT..............................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ATCACATTATGGCCGTCGG-----------------------------------A2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TACTCGTATTCTCAATCACATTATGGCC.........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AATCACATTATGGCCGTCG.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TCTTTGCCGAGATTACTCGTATTCTCA.......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTCTCAATCACATTATGG...........................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CGAGATTACTCGTATTCTCAATC....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TCAATCACATTATGGCCGTCGG-----------------------------------A2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................TACTCGTATTCTCAATCACATTAT.............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CTCGTATTCTCAATCACATTATGGCC.........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTCTTTGCCGAGATTACTCGTATTCTCAATCACATTATGGCCGTCGG-----------------------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................CACATTATGGCCGTCGG-----------------------------------G1812.00200200000000000000
...................................................................................................................................................................................................................................................................................................................................................................TACTCGTATTCTCAATCACATTATGGC..........................................2711.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................GTATTCTCAATCACATTATGGC..........................................2211.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTCTCAATCACATTATGGCCGTCGG-----------------------------------A2611.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................TCTCTTTGCCGAGATTACTCGTATTC..........................................................2611.00100010000000000000
droSec2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTCTTTGCCGAGATTACTCGTATTCTCAATCACATTATGGCCGTCGG-----------------------------------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAAAA-AAAA---------------------------------------------------------------------------------------TATTACCTC---------------------T----------------------------------ATGCACT----------------TTTTT--------------------------------------------------------------------------------GAAA-------------------------------------------------ATATTATTTTCTGCAGCTCTTTTTGCTGAGATTACTCGGATTCTGAATCACATTATGGCCGTCGG-----------------------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................GATTACTCGGATTCTGAAT.....................................................1912.00200000020000
..............................................................................................................................................................................................................................................................................................................................................................GAGATTACTCGGATTCTGA.......................................................1912.00200000020000
....................................................................................................................................................................................................................................................................................................................................................TCTTTTTGCTGAGATTACTCG...............................................................2112.00201000010000
................................................................................................................................................................................................................................................................................................................................................................GATTACTCGGATTCTGAATCACAT................................................2412.00210000010000
.......................................................................................................................................................................................................................................................................................................................................................TTTTGCTGAGATTACTCGGA.............................................................2011.00110000000000
...................................................................................................................................................................................................................................................................................................................................................CTCTTTTTGCTGAGATTACTCGGA.............................................................2411.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................TGAGATTACTCGGATTCTGAATCACA.................................................2611.00110000000000
.....................................................................................................................................................................................................................................................................................................................................................CTTTTTGCTGAGATTACTCG...............................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................AGATTACTCGGATTCTGAAT.....................................................2011.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................TACTCGGATTCTGAATCACA.................................................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................TCTGAATCACATTATGGCCGTCG.....................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................AGATTACTCGGATTCTGAATC....................................................2111.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................CTTTTTGCTGAGATTACTC................................................................1911.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................TTACTCGGATTCTGAATC....................................................1811.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................ATTACTCGGATTCTGAATCACATTATGGCC.........................................3011.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................AGATTACTCGGATTCTGAATCAC..................................................2311.00101000000000
................................................................................................................................................................................................................................................................................................................................................................GATTACTCGGATTCTGAATC....................................................2011.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................TACTCGGATTCTGAATCAC..................................................1911.00110000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTCTGAATCACATTATGGCCGTC......................................2311.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................GATTCTGAATCACATTATGGCC.........................................2211.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................TTACTCGGATTCTGAATCACATTAT.............................................2511.00110000000000
..............................................................................................................................................................................................................................................................................................................................................................GAGATTACTCGGATTCTGAATC....................................................2211.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................TTACTCGGATTCTGAATCAC..................................................2011.00110000000000
.......................................................................................................................................................................................................................................................................................................................................................................CGGATTCTGAATCACATTAT.............................................2011.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................AGATTACTCGGATTCTGAATCACA.................................................2411.00110000000000
..............................................................................................................................................................................................................................................................................................................................................................GAGATTACTCGGATTCTGAAT.....................................................2111.00100000010000
droEre2
AAA----------------------------------------------------------------------------------------------TAATACCT----------------------T----------------------------------TTGCTGT----------------TTTTT--------------------------------------------------------------------------------T---------------------------------------------------AATATTATTTTCCGCAGCTCTTTTTGCCGAGATTACACGGATCCTGAATCACATTATGGCCGTCGG-----------------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................GATTACACGGATCCTGAAT.....................................................1913.0030001110
.................................................................................................................................................................................................................................................................................................................................................................ATTACACGGATCCTGAATCAC..................................................2112.0020000020
...................................................................................................................................................................................................................................................................................................................................................................TACACGGATCCTGAATCACATTATGGC..........................................2711.0010000010
.................................................................................................................................................................................................................................................................................................................................................................ATTACACGGATCCTGAAT.....................................................1811.0010000010
.......................................................................................................................................................................................................................................................................................................................................................TTTTGCCGAGATTACACG...............................................................1811.0010001000
..................................................................................................................................................................................................................................................................................................................................................................................TCACATTATGGCCGTCGG-----------------------------------.1811.0011000000
.................................................................................................................................................................................................................................................................................................................................................................ATTACACGGATCCTGAATCACATTA..............................................2511.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................GATCCTGAATCACATTATGGCCGT.......................................2411.0011000000
...................................................................................................................................................................................................................................................................................................................................................................TACACGGATCCTGAATCACAT................................................2111.0011000000
......................................................................................................................................................................................................................................................................................................................................................................ACGGATCCTGAATCACATTATGGCC.........................................2511.0011000000
......................................................................................................................................................................................................................................................................................................................................................TTTTTGCCGAGATTACACGGATCC..........................................................2411.0011000000
...........................................................................................................................................................................................................................................................................................................................................................GCCGAGATTACACGGATCCTGAATCACA.................................................2811.0011000000
..................................................................................................................................................................................................................................................................................................................................................................TTACACGGATCCTGAATCACATTATG............................................2611.0010000100
.................................................................................................................................................................................................................................................................................................................................................................ATTACACGGATCCTGAATCACA.................................................2211.0010000100
................................................................................................................................................................................................................................................................................................................................................................................AATCACATTATGGCCGTCGG-----------------------------------.2011.0011000000
...................................................................................................................................................................................................................................................................................................................................................................TACACGGATCCTGAATCACA.................................................2011.0010000100
dp5
TTT----------------------------------------------------------------------------------------------------------------------------T----------------------------------TTGCATT----------------TCTA------------------------------------------------------------------------------------------------------------------------------------------TATTCGCTGCAGCGCTGTTTGCTGAAATAACACGCATTCTAAACCACATAATGGCTGTAGG-----------------------------------GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................GAAATAACACGCATTCTAAA......................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................GAAATAACACGCATTCTAAACCACAT................................................2611.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................AACCACATAATGGCTGTA......................................1811.0011000000000
................................................................................................................................................................................................................................................................................................................................................................................AACCACATAATGGCTGTAGG-----------------------------------C2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................AACCACATAATGGCTGTAGG-----------------------------------.2011.0010100000000
..................................................................................................................................................................TTGCATT----------------TCTA------------------------------------------------------------------------------------------------------------------------------------------TATTCGCTGCAG.....................................................................................2311.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................CACATAATGGCTGTAGG-----------------------------------G1811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................AAACCACATAATGGCTGTA......................................1911.0010010000000
droPer2
TTT----------------------------------------------------------------------------------------------------------------------------T----------------------------------TTGCATT----------------TCTA------------------------------------------------------------------------------------------------------------------------------------------TATTCGCTGCAGCGCTGTTTGCTGAAATAACACGCATTCTAAACCACATAATGGCTGTAGG-----------------------------------GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................AACACGCATTCTAAACCACA.................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................ATTCTAAACCACATAATGGCTGTAGG-----------------------------------.2611.001010000
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTTTGCGGAGATTACACGCATCCTGAACCACATAATGGCAGTGGG-----------------------------------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................GATTACACGCATCCTGAACCA...................................................2112.00201010
...................................................................................................................................................................................................................................................................................................................................................................TACACGCATCCTGAACCACATAATGGCA.........................................2811.00101000
.......................................................................................................................................................................................................................................................................................................................................................GTTTGCGGAGATTACACGCATC...........................................................2211.00100010
...........................................................................................................................................................................................................................................................................................................................................................................TCCTGAACCACATAATGGCA.........................................2011.00110000
..................................................................................................................................................................................................................................................................................................................................................................TTACACGCATCCTGAACCACA.................................................2111.00100010
...................................................................................................................................................................................................................................................................................................................................................................TACACGCATCCTGAACCAC..................................................1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................TTACACGCATCCTGAACCA...................................................1911.00100010
....................................................................................................................................................................................................................................................................................................................................................................ACACGCATCCTGAACCACAT................................................2011.00100010
................................................................................................................................................................................................................................................................................................................................................................GATTACACGCATCCTGAAC.....................................................1911.00100010
...........................................................................................................................................................................................................................................................................................................................................................GCGGAGATTACACGCATCC..........................................................1911.00101000
....................................................................................................................................................................................................................................................................................................................................................................ACACGCATCCTGAACCACATAATGGCA.........................................2711.00100010
.......................................................................................................................................................................................................................................................................................................................................................GTTTGCGGAGATTACACGC..............................................................1911.00100010
........................................................................................................................................................................................................................................................................................................................................................................GCATCCTGAACCACATAATGGCAGT.......................................2511.00100100
droVir3
TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGCTCTCTTCGCTGAAATAACGCGCATCCTCAACCACATAATGGCTGTGGG-----------------------------------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................TAACGCGCATCCTCAACCA...................................................1911.001000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AAATAACGCGCATCCTCA.......................................................1811.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CTTCGCTGAAATAACGCGCATCC..........................................................2311.001000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ATAACGCGCATCCTCAACCACA.................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GAAATAACGCGCATCCTCAAC.....................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TCGCTGAAATAACGCGCATCCTCAACC....................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AACGCGCATCCTCAACCACAT................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CTCTTCGCTGAAATAACGCGCATCCTCAACC....................................................3111.001000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................TAACGCGCATCCTCAACCACA.................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CTTCGCTGAAATAACGCGCATC...........................................................2211.001000000000000000000000100000000000000000000000000000000000000000
droMoj3
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGCTCTTTTCGCTGAGATAACTCGAATTCTCAATCATATAATGGCTGTTGG-----------------------------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................CTTTTCGCTGAGATAACTCGAATTCTC........................................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................................GATAACTCGAATTCTCAATCATAT................................................2411.001100000
droGri2
TGATA-TATATA---------------------------------TATATA----------GCTGATTAATTTTTCTTTTCTATTATAATTTTCT----------AA-AAAAAAATTAATTAAACATT-----------------------------TTTTTTGGCACTCAACTGAGTTTTTTTTTGTT--------TTT--ATC-------------------------------------------------------------TCCCAAAAATGAAATATATTTATATATCCTATTCGATTTGTAATCAATGTTT---------ATTGCTTTGCAGCATTGTTTGGCGAAATCACTCGGATTCTGAATCACATAATGGCTATTGG-----------------------------------CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:49 PM