dan_98

Antisense to intron [Dana\GF14310-in]; utr5 [utr5_plus_812]; utr5 [utr5_plus_813]

ATGGTTTATAGTCATTAATTAGTTAAAAAGTGTTCTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATTAAACTAAAGAGCTACTAAGAATACGAGTGTTCGCGGGATGAGCA *********************************....(((((((..((((((((((.((((..((.((((((..((.......))..)))))).)))))).)))).)))))).))))))).....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V105 male body	M044 female body	V055 head	V106 head	M058 embryo
..................................................ACAAGGTACATATCTGGTTGTT...........................................................................................	22	0	1	12.00	12	5	2	3	2	0
..................................................ACAAGGTACATATCTGGTTGTTTC.........................................................................................	24	0	1	7.00	7	2	1	0	3	1
..................................................ACAAGGTACATATCTGGTTGTTT..........................................................................................	23	0	1	7.00	7	6	0	1	0	0
.................................................AACAAGGTACATATCTGGTTGTTT..........................................................................................	24	0	1	6.00	6	1	2	2	1	0
...........................................................................................AACATCTGTATCTACCTTTGT...................................................	21	0	1	6.00	6	2	1	1	2	0
..................................................ACAAGGTACATATCTGGTTGT............................................................................................	21	0	1	5.00	5	4	1	0	0	0
.................................................AACAAGGTACATATCTGGTTGT............................................................................................	22	0	1	5.00	5	4	1	0	0	0
...........................................................................................AACATCTGTATCTACCTTTGTTT.................................................	23	0	1	3.00	3	0	3	0	0	0
...........................................................................................AACATCTGTATCTACCTTTGTT..................................................	22	0	1	3.00	3	0	3	0	0	0
............................................................................................ACATCTGTATCTACCTTTGTTTT................................................	23	1	1	3.00	3	0	3	0	0	0
..................................................AAAAGGTACATATCTGGGTGTTT..........................................................................................	23	2	1	1.00	1	0	0	1	0	0
..................................................ACAAGGTATATATCTGGTTGTTTC.........................................................................................	24	1	1	1.00	1	0	1	0	0	0
..................................................ACAAGGCACATATCTGGGTGTTT..........................................................................................	23	2	1	1.00	1	0	0	1	0	0
..................................................ACAAGGAACATATCTGGTTGTT...........................................................................................	22	1	1	1.00	1	0	0	1	0	0
..................................................ACAAGGTACATATCTGGTTGAT...........................................................................................	22	1	1	1.00	1	1	0	0	0	0
...........................................................................................AACATCTGTATCTACCTTTG....................................................	20	0	1	1.00	1	0	0	0	1	0
..................................................ACAAGGTACACATCTGGTTGTTTC.........................................................................................	24	1	1	1.00	1	1	0	0	0	0
.................................................AACAAGGTACATATCTGGTT..............................................................................................	20	0	1	1.00	1	0	1	0	0	0
.................................................AACAAGGTACATATCTGGTTGTT...........................................................................................	23	0	1	1.00	1	0	1	0	0	0
............................................................................................ACATCTGTATCTACCCTTGTTTT................................................	23	2	1	1.00	1	0	1	0	0	0
..................................................ACAAGGTACATATCTGTTTGT............................................................................................	21	1	1	1.00	1	0	0	1	0	0

TACCAAATATCAGTAATTAATCAATTTTTCACAAGAACTAAATTAGATTTTGTTCCATGTATAGACCAACAAAGGATATAAGTTTCAAACTTTGTAGACATAGATGGAAACAAAGCTAATTTGATTTCTCGATGATTCTTATGCTCACAAGCGCCCTACTCGT **********************************....(((((((..((((((((((.((((..((.((((((..((.......))..)))))).)))))).)))).)))))).))))))).....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	V039 embryo	M058 embryo	M044 female body	V106 head
..........................................................................................TTGGTAGGCATAGCTGGAAA.....................................................	20	3	3	0.33	1	1	0	0	0	0
..........................................................................................................GAAACAAAGCTAATTCGAG......................................	19	2	4	0.25	1	0	1	0	0	0
.....................CTATTTTTCACAAGTAGTAAATT.......................................................................................................................	23	3	6	0.17	1	0	0	1	0	0
.............................................................TAGACCAACCATGGATCTA...................................................................................	19	3	16	0.06	1	1	0	0	0	0
.................................................................................GTTTCATACTCTGTAGACAC..............................................................	20	3	18	0.06	1	0	0	0	1	0
.............................CACAAGAACTAGACTATAT...................................................................................................................	19	3	20	0.05	1	0	1	0	0	0
........................................................................................ACCTTGTAGACCTAGATGA........................................................	19	3	20	0.05	1	0	0	0	1	0
................................................................................AGTTTCAAACTTTGCATGC................................................................	19	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Type	Alignment
droAna3	scaffold_12916:11085411-11085573 +	dan_98	confident	ATGGTTTATAGTCATTAAT-------------------------------T---AGTT-AAAAAGTGTTCTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATT-AAACTAA--AGAGCTAC-TAA------GAA----TA-----C--GAGTG--TTCGC--------------------GGGATGA--------GC--A
droBip1	scf7180000396572:743185-743335 +			ATTTGTA---GTC-------------------------------------T---GGTT-CAAATATGTTCTTGATTTAATCTAAAACAAGGTACATATCGGG-TGTTTCCTGCATTTTAAGATTGAAACATCTGTATCTACCTTTGTTTCGATT-TAACTAA--AGAGCTAC-ACA------GAT----AA--------A--AGTGTT--C-ATC------------------GGAAA--------GA--A
droKik1	scf7180000302389:430299-430445 -			GAGGAATGA--G-------------------------------------------------GGTGGGTCATCAGTGCAGTCTAGAACAAGGTACATATCAGG-TGTTTCCTGCATTCGAAAATCGAAACATCTGTATCTACCTTAGTTTCGAAT-GGACTCA--AAAGCAAC-TCT------AAC----C----CAC--AAGAG--TTTGA--------------------GGTGGAA--------AA--G
droFic1	scf7180000453932:196568-196734 -			GGGGAGAGA--TGAT-----------------------------------G---AGTGCCTCACTCGCTTTTAATCTAATCTAAAACAAGGTATTTATCAGGTTGTTTCCTATATTCGAAGTTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGCGCAAC-GCC------ACTCTAATT---AA---A------AT--A-AT---------CAGTCCCAGTAATGA--------GA--A
droEle1	scf7180000490753:31571-31726 +			GTGGGAA-------A-----------------------------------G---AGTA-CTGAATGGTTCTCCATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATGATCGATGATTGAAACATCTGTATCTACCTCTGTTTCGAAT-GGACAAA--AGGCCAGC-TCC------AAC----AAAGTAAC--T------AT--C-GT----------TTT---------GTCAAATT---A--T
droRho1	scf7180000778253:32501-32665 -			AAGGAGAAG--AAAT-----------------------------------G---AGTA-CTGACTGGCTCTCGATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTCAACCGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGACCAAC-TCC------ACC----ATAATAA---A------TT--A-TTGT--------GTT---------GCCAAATTATTC--A
droBia1	scf7180000302422:3831635-3831801 +			GTGGAGAAAAGTACT-----------------------------------TAGCACTA-CTGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGCTTGTTTCCTATATTTGAAGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACATA--AGAGCAAC-TTC------TCA----ATAGCTAT----------G--C-ATGCT--GCAA---T------GGCGA--------TA--A
droTak1	scf7180000415871:386322-386490 +			GAGGAGGAA-ATAAT-----------------------------------A---AGCA-CTGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATTTTCGACGGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAAAAAGAGCAAC-TCC------TCC----TAAGTTAT----------G--C-ATGCT-----ATTGC---------GCCAAATT---AATA
droEug1	scf7180000409063:318307-318469 +			GAGGAGAGA-ATACT-----------------------------------G---AGTA-GTGACTTGTTCTTCTTCTAATCTAGAACAAGGTATATATCAGATTGTTTCCTATATTCGACGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGAGCACC--CC------TCG----AAAGTAAT--A------CT--C-GAGCA-----A---TACC------AG--------TAATA
dm3	chr2L:5641961-5642106 +	dme-mir-963	Known_mirbase	GAGGATATG-GCAAT-----------------------------------T---ACAA-CTA-ATTTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTCGA---TCGAAACATCTGTATATACCTTTGTTCCGATT-GGACAAA--AGTGCGTC-TTC------TAG----TTGGTGAT-------------------------------------ACCA--------AT--A
droSim2	2l:5446693-5446848 +	dsi-mir-963	Known_mirbase	GAGGACATG-GCAAT-----------------------------------T---ACTA-CTGATT--TTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TCGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCATC-TTC------TAG----TGGGTAA---A------TC--C-ATGTG-----GTTAT---------GA--------CA--A
droSec2	scaffold_5:3719679-3719835 +	dse_67	confident	GAGGACATG-GCAAT-----------------------------------T---ACTA-CTGAT-TTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TAGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCATC-TTC------TAG----TGGGTAA---A------TC--C-ATGTG-----GTTAT---------GA--------TA--A
droYak3	2L:13551171-13551315 -	dya_63	confident	GTGGGTA-------T-----------------------------------C---ACTA-CTGCATTGTTCTTGGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCATC-TTC------AAG----T----TAT--A------TC--C-------------TAT---------GA--------TC--A
droEre2	scaffold_4929:5730354-5730510 +	der_232	confident	GAGGATGTG-GGCAT-----------------------------------C---AGTG-CTG-CTTGTTCTTAGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTGTATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCATC-TTC------TAG----TTGGTTAC--A------TC--C-TTGC------------------GTTA--------GT--G
dp5	4_group4:3181661-3181661 -			----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droPer2	scaffold_10:2200587-2200587 -			----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droWil2	scf2_1100000004521:8625040-8625210 -	dwi_93	confident	ATCATTATTAATCA----TAGTTAATTGAGTT----------------------------AATTGAATTCTAATTCTAGTCTAAAACAAGGTACATATCAGGTTGTTTCGTATATTTGAAGCCTGAAACATCTGTATCTACCTTTGTTTCGAATAGGACTAA--AGAGTTTTCTTTAAGCCCAAC----A------C--A------TTTGTTGT---------CTGT---------GT--------CA--G
droVir3	scaffold_12963:3616320-3616479 +	dvi-mir-963	Known_mirbase	AGAAATTGGAGTTAATGTA-------------------------------C---GGAT-GGGCATAAACAACAATCTAATCTGAAACAAGGTACATATCAGAGTGTTTCTTAAATTTGATTATTGAAACCTCTGTATATACCTTTCATTGGATT-AAACTGA--TAAGCACA-TGT------TTC----AAA----------AGTTTT--C-ATAT----------T---------GA--------AA--A
droMoj3	scaffold_6500:14019325-14019511 +	dmo_12	confident	ATGAGAAA---TGAA-----GGGAATCGGGTTAACTTTGGCAATTGGAGTG---CGCA-CTGA------ATCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATT-CAACCGAA-AGTCCAT--AAA------TAT--------TGATATA---------------TGATGA-TGATT---------TTCCAATTG-TG--A
droGri2	scaffold_15252:3148138-3148319 +	dgr_53	confident	TGCAGAACAAATAA----AAGATTAGAAAGTGAACAGTGAACATAACA------------AAGCAAAATAACAGTCTAATCCAAAACAAGGTACATATTAGAGCGTTTCCTATCTTTGAGTATTGAAACCTCTGTATATACCTTCAT-TCGATT-CGACTGA--TAATCTCA-TTA--------------AAATCAT--T-------T--C-AGTTG-----AT-------TAGAAGA--------GT--G

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

ATGGTTTATAGTCATTAAT-------------------------------T---AGTT-AAAAAGTGTTCTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATT-AAACTAA--AGAGCTAC-TAA------GAA----TA-----C--GAGTG--TTCGC--------------------GGGATGA--------GC--A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................ACAAGGTACATATCTGGTTGTT................................................................................................................................................	22	1	12.00	12	2	0	0	3	5	2
.....................................................................................ACAAGGTACATATCTGGTTGTTTC..............................................................................................................................................	24	1	7.00	7	1	1	0	0	2	3
.....................................................................................ACAAGGTACATATCTGGTTGTTT...............................................................................................................................................	23	1	7.00	7	0	0	0	1	6	0
....................................................................................AACAAGGTACATATCTGGTTGTTT...............................................................................................................................................	24	1	6.00	6	2	0	0	2	1	1
..............................................................................................................................AACATCTGTATCTACCTTTGT........................................................................................................	21	1	6.00	6	1	0	0	1	2	2
.....................................................................................ACAAGGTACATATCTGGTTGT.................................................................................................................................................	21	1	5.00	5	1	0	0	0	4	0
....................................................................................AACAAGGTACATATCTGGTTGT.................................................................................................................................................	22	1	5.00	5	1	0	0	0	4	0
..............................................................................................................................AACATCTGTATCTACCTTTGTTT......................................................................................................	23	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................AACATCTGTATCTACCTTTGTT.......................................................................................................	22	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................ACATCTGTATCTACCTTTGTTTT.....................................................................................................	23	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................AACATCTGTATCTACCTTTG.........................................................................................................	20	1	1.00	1	0	0	0	0	0	1
....................................................................................AACAAGGTACATATCTGGTT...................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................AACAAGGTACATATCTGGTTGTT................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droBip1

ATTTGTA---GTC-------------------------------------T---GGTT-CAAATATGTTCTTGATTTAATCTAAAACAAGGTACATATCGGG-TGTTTCCTGCATTTTAAGATTGAAACATCTGTATCTACCTTTGTTTCGATT-TAACTAA--AGAGCTAC-ACA------GAT----AA--------A--AGTGTT--C-ATC------------------GGAAA--------GA--A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAGGAATGA--G-------------------------------------------------GGTGGGTCATCAGTGCAGTCTAGAACAAGGTACATATCAGG-TGTTTCCTGCATTCGAAAATCGAAACATCTGTATCTACCTTAGTTTCGAAT-GGACTCA--AAAGCAAC-TCT------AAC----C----CAC--AAGAG--TTTGA--------------------GGTGGAA--------AA--G	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGGGAGAGA--TGAT-----------------------------------G---AGTGCCTCACTCGCTTTTAATCTAATCTAAAACAAGGTATTTATCAGGTTGTTTCCTATATTCGAAGTTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGCGCAAC-GCC------ACTCTAATT---AA---A------AT--A-AT---------CAGTCCCAGTAATGA--------GA--A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTGGGAA-------A-----------------------------------G---AGTA-CTGAATGGTTCTCCATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATGATCGATGATTGAAACATCTGTATCTACCTCTGTTTCGAAT-GGACAAA--AGGCCAGC-TCC------AAC----AAAGTAAC--T------AT--C-GT----------TTT---------GTCAAATT---A--T	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGGAGAAG--AAAT-----------------------------------G---AGTA-CTGACTGGCTCTCGATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTCAACCGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGACCAAC-TCC------ACC----ATAATAA---A------TT--A-TTGT--------GTT---------GCCAAATTATTC--A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTGGAGAAAAGTACT-----------------------------------TAGCACTA-CTGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGCTTGTTTCCTATATTTGAAGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACATA--AGAGCAAC-TTC------TCA----ATAGCTAT----------G--C-ATGCT--GCAA---T------GGCGA--------TA--A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAGGAGGAA-ATAAT-----------------------------------A---AGCA-CTGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATTTTCGACGGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAAAAAGAGCAAC-TCC------TCC----TAAGTTAT----------G--C-ATGCT-----ATTGC---------GCCAAATT---AATA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAGGAGAGA-ATACT-----------------------------------G---AGTA-GTGACTTGTTCTTCTTCTAATCTAGAACAAGGTATATATCAGATTGTTTCCTATATTCGACGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGAGCACC--CC------TCG----AAAGTAAT--A------CT--C-GAGCA-----A---TACC------AG--------TAATA	Size	Hit Count	Total Norm	Total
No Reads

dm3

GAGGATATG-GCAAT-----------------------------------T---ACAA-CTA-ATTTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTCGA---TCGAAACATCTGTATATACCTTTGTTCCGATT-GGACAAA--AGTGCGTC-TTC------TAG----TTGGTGAT-------------------------------------ACCA--------AT--A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................ACAAGGTAAATATCAGGTTGTTTC..............................................................................................................................................	24	1	6266.00	6266	0	0	1	0	0	5	0	0	0	0	1	54	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	0	0	0	0	0	0	3	12	3	2	1	9	6	27	2	6	2	12	2	3	4	18	9	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	8	6	10	1	9	0	1	2	0	0	1	3	2	19	0	1	437	3	7	157	0	0	6	13	12	15	1	0	41	1	8	28	4	182	3	0	1	54	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	17	17	5	20	35	1	5	2	5	0	0	0	0	0	0	0	0	0	0	0	2	5	0	5	0	0	0	19	1	6	0	0	0	2	1	0	0	0	2	0	0	342	10	618	2	0	0	0	57	0	546	0	0	0	0	0	0	2	11	0	0	0	0	0	0	0	0	1	44	214	0	9	94	66	177	542	172	30	212	137	0	0	0	0	0	0	0	0	0	1	0	2	0	0	1	2	1	266	0	3	146	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	59	359	2	27	11	39	0	19	0	0	0	1	0	0	0	0	0	3	4	18	1	0	0	6	12	2	5	44	231	44	32	0	0	1	44	7	0	0	0	0	0	0	0	0	0	0	0	9	2	98	4	7	12	12	45	0	3	4	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTT...............................................................................................................................................	23	1	5016.00	5016	0	0	0	0	0	4	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	1	405	0	0	0	0	0	0	0	0	0	0	0	0	8	2	0	0	0	7	11	0	0	2	10	1	8	3	5	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	3	4	0	6	0	0	0	0	0	0	0	3	10	0	0	78	2	4	72	2	0	4	9	6	9	0	0	2	0	5	13	0	61	2	1	0	29	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	10	8	4	10	31	3	5	1	4	0	0	0	0	0	8	0	0	0	0	0	4	9	0	6	0	0	0	33	0	1	0	1	0	6	0	0	0	0	0	0	3	276	2	571	3	0	0	0	154	0	525	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	9	60	0	6	40	18	129	431	42	13	60	81	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	28	0	0	20	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	38	196	7	26	6	33	10	20	1	0	0	0	0	0	0	0	0	0	1	106	1	0	1	2	16	2	7	115	612	87	103	0	0	3	43	11	0	0	0	0	0	0	0	0	0	0	0	10	1	53	2	6	6	2	39	0	2	0	1	0
.....................................................................................ACAAGGTAAATATCAGGTTGTT................................................................................................................................................	22	1	2059.00	2059	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	3	385	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	4	0	4	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	21	0	0	0	4	3	4	0	0	2	0	0	4	0	7	3	0	0	34	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	5	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	4	0	0	0	0	0	3	0	0	0	0	0	0	1	72	1	262	3	0	0	0	88	0	196	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	25	1	1	8	6	27	91	13	2	12	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	7	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	19	106	4	17	0	17	2	7	0	0	0	0	0	1	0	0	0	0	1	24	1	0	0	2	6	1	4	19	286	37	44	0	0	0	24	3	0	0	0	0	0	0	0	0	0	0	0	7	0	14	2	2	2	0	19	0	0	0	0	7
....................................................................................AACAAGGTAAATATCAGGTTGTTT...............................................................................................................................................	24	1	634.00	634	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	2	3	0	1	0	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	5	0	1	1	0	0	0	0	0	4	1	0	36	0	1	17	0	0	0	2	0	0	0	0	3	0	4	1	0	16	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	1	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	7	0	0	0	7	1	1	0	1	0	4	0	0	0	0	0	0	0	106	2	59	1	0	0	0	22	0	53	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	20	0	1	1	7	11	80	8	2	5	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	2	6	33	2	5	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGT.................................................................................................................................................	21	1	613.00	613	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	34	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	7	0	0	4	0	0	0	0	0	2	0	0	0	0	1	1	1	1	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	6	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	18	3	82	0	0	0	0	18	0	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	21	0	2	2	1	6	15	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	59	1	10	4	9	2	10	0	0	0	0	0	0	1	0	0	0	0	13	0	0	1	0	1	2	1	11	92	16	21	0	0	1	15	1	0	0	0	0	0	0	0	0	0	0	0	2	0	10	3	0	2	0	9	0	0	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTC..............................................................................................................................................	25	1	415.00	415	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	1	1	2	1	0	2	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	23	0	0	2	0	0	0	1	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	3	2	0	3	13	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	28	1	0	0	0	1	0	18	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	8	25	0	1	9	10	11	55	19	3	14	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	11	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	2	0	1	2	15	4	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTT................................................................................................................................................	23	1	351.00	351	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	7	0	0	7	0	0	0	0	1	1	0	0	1	0	0	3	0	4	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	1	0	0	0	0	1	0	2	56	0	60	0	0	0	0	15	0	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	3	1	8	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	1	0	0	7	23	1	6	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	0	0	0	0	0	0	1	0
....................................................................................AACAAGGTAAATATCAGGTTGT.................................................................................................................................................	22	1	127.00	127	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	13	0	0	0	0	12	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	12	1	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	14	1	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0
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....................................................................................AACAAGGTAAATATCAGGTTGTTTCT.............................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACATCTGTATATACCTTTGTTTT.....................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTAAATATCAGG.....................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GGTAAATATCAGGTTGTTT...............................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTAA.............................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTTT.............................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GAGGACATG-GCAAT-----------------------------------T---ACTA-CTGATT--TTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TCGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCATC-TTC------TAG----TGGGTAA---A------TC--C-ATGTG-----GTTAT---------GA--------CA--A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................ACAAGGTAAATATCAGGTTGTTTC..............................................................................................................................................	24	1	766.00	766	0	99	7	7	128	0	9	10	0	0	22	19	1	464	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTT...............................................................................................................................................	23	1	752.00	752	0	20	0	3	22	2	20	32	1	0	8	0	0	644	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTCC.............................................................................................................................................	25	1	641.00	641	0	0	0	0	634	6	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTT................................................................................................................................................	22	1	464.00	464	2	23	1	1	239	2	4	2	0	0	5	0	0	185	0	0	0
.....................................................................................ACAAGGTAAATATCAGGT....................................................................................................................................................	18	1	337.00	337	0	1	0	0	326	5	0	0	0	0	3	0	0	2	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGT.................................................................................................................................................	21	1	295.00	295	0	8	0	1	231	3	0	1	1	0	5	0	1	44	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTG..................................................................................................................................................	20	1	194.00	194	0	1	1	0	178	5	0	0	0	0	0	0	0	9	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTC..............................................................................................................................................	25	1	171.00	171	0	2	0	0	158	3	0	0	0	0	2	0	0	6	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTT...................................................................................................................................................	19	1	105.00	105	0	0	0	0	101	2	0	0	0	0	0	0	0	2	0	0	0
....................................................................................AACAAGGTAAATATCAGGT....................................................................................................................................................	19	1	93.00	93	0	0	0	0	91	1	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................AACATCTGTATATACCTTTGAT.......................................................................................................	22	1	82.00	82	1	27	4	1	0	0	6	5	1	0	0	0	0	37	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTG..................................................................................................................................................	21	1	74.00	74	0	2	0	0	69	1	0	0	0	0	1	0	0	1	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGT.................................................................................................................................................	22	1	72.00	72	1	6	0	0	55	3	1	0	0	0	2	0	0	4	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTT................................................................................................................................................	23	1	63.00	63	0	3	0	0	30	1	1	1	0	0	4	0	0	23	0	0	0
....................................................................................AACAAGGTAAATATCAGG.....................................................................................................................................................	18	1	50.00	50	0	0	0	0	50	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACATCTGTATATACCTTTGA........................................................................................................	21	1	47.00	47	2	5	0	0	19	1	0	0	0	0	0	0	0	20	0	0	0
....................................................................................AACAAGGTAAATATCAGGTT...................................................................................................................................................	20	1	41.00	41	0	0	0	0	39	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTT...............................................................................................................................................	24	1	36.00	36	0	2	0	0	4	1	3	1	0	0	5	0	1	19	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTCA.............................................................................................................................................	25	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	34	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTCC.............................................................................................................................................	26	1	31.00	31	0	0	0	0	30	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACATCTGTATATACCTTTGATC......................................................................................................	23	1	27.00	27	0	4	2	0	18	0	0	1	0	0	0	0	0	2	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTT..............................................................................................................................................	24	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	26	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTA..............................................................................................................................................	24	1	17.00	17	0	0	0	0	0	0	1	0	0	0	0	0	0	16	0	0	0
.............................................................................................................................AAACATCTGTATATACCTTTGA........................................................................................................	22	1	12.00	12	0	1	0	0	1	0	0	0	0	0	0	0	0	10	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTCT.............................................................................................................................................	25	1	11.00	11	0	0	0	0	0	0	1	1	0	0	0	0	0	9	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTA...............................................................................................................................................	23	1	10.00	10	0	0	0	0	0	0	1	0	0	0	0	0	0	9	0	0	0
...............................................................................................................................ACATCTGTATATACCTTTGATC......................................................................................................	22	1	9.00	9	0	4	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTCT.............................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTC...............................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTAA..............................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
..............................................................................................................................AACATCTGTATATACCTTTG.........................................................................................................	20	1	5.00	5	0	0	0	0	3	0	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................GTAAATATCAGGTTGTTTC..............................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..............................................................................................................................AACATCTGTATATACCTT...........................................................................................................	18	1	4.00	4	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTA...............................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
.............................................................................................................................AAACATCTGTATATACCTTTGAT.......................................................................................................	23	1	4.00	4	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTAA.............................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0
............................................................................................AAATATCAGGTTGTTTC..............................................................................................................................................	17	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTCAA............................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
..............................................................................................................................AACATCTGTATATACCTTTGATT......................................................................................................	23	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTAAA............................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
......................................................................................CAAGGTAAATATCAGGTTGTTTCC.............................................................................................................................................	24	1	3.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TAAATATCAGGTTGTTTC..............................................................................................................................................	18	1	3.00	3	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGG.................................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTCAAA...........................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................................TAAATATCAGGTTGTTT...............................................................................................................................................	17	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTCA.............................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGC.................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACATCTGTATATACCTTTGATCCG....................................................................................................	24	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTAA.............................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
.........................................................................................GGTAAATATCAGGTTGTT................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
..............................................................................................................................AACATCTGTATATACCTTTGAC.......................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTCCT............................................................................................................................................	26	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACATCTGTATATACCTTTGA........................................................................................................	20	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTG..............................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...............................................................................................................................ACATCTGTATATACCTTTGAT.......................................................................................................	21	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................CAAGGTAAATATCAGGTTGTTTC..............................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................AAGGTAAATATCAGGTTGTTT...............................................................................................................................................	21	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTT..................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................ACATCTGTATATACCTTTGATCA.....................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................AGGTAAATATCAGGTTGTTTC..............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTA................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................CAAGGTAAATATCAGGTTGTT................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTA..............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGC.................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTAAA............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTAA...............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGA.................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................AAGGTAAATATCAGGTTGTTTCAC............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................AACATCTGTATATACCTTTGG........................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTCG.............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................AAACATCTGTATATACCTTTGAA.......................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTTAG............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................AACATCTGTATATACCTTTGAA.......................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................AATATCAGGTTGTTTC..............................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGG.....................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTTT.............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................AACATCTGTATATACCTTT..........................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTTT.............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................AAATATCAGGTTGTTTCC.............................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTTA.............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................AACAAGGTAAATATCA.......................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................AACATCTGTATATACCTTAT.........................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

GAGGACATG-GCAAT-----------------------------------T---ACTA-CTGAT-TTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TAGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCATC-TTC------TAG----TGGGTAA---A------TC--C-ATGTG-----GTTAT---------GA--------TA--A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................ACAAGGTAAATATCAGGTTGTTTC..............................................................................................................................................	24	1	255.00	255	5	128	88	34
.....................................................................................ACAAGGTAAATATCAGGTTGTTT...............................................................................................................................................	23	1	139.00	139	1	125	8	5
.....................................................................................ACAAGGTAAATATCAGGTTGTT................................................................................................................................................	22	1	23.00	23	0	22	1	0
....................................................................................AACAAGGTAAATATCAGGTTGTTT...............................................................................................................................................	24	1	19.00	19	1	9	8	1
.....................................................................................ACAAGGTAAATATCAGGTTGT.................................................................................................................................................	21	1	14.00	14	0	13	0	1
....................................................................................AACAAGGTAAATATCAGGTTGTT................................................................................................................................................	23	1	11.00	11	0	11	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTC..............................................................................................................................................	25	1	9.00	9	1	5	3	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTTCT.............................................................................................................................................	25	1	7.00	7	0	6	0	1
....................................................................................AACAAGGTAAATATCAGGTTGT.................................................................................................................................................	22	1	5.00	5	1	3	0	1
..............................................................................................................................AACATCTGTATATACCTTTGAT.......................................................................................................	22	1	2.00	2	0	1	1	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTC...............................................................................................................................................	23	1	2.00	2	0	1	0	1
.....................................................................................ACAAGGTAAATATCAGGTT...................................................................................................................................................	19	1	1.00	1	0	0	1	0
.....................................................................................ACAAGGTAAATATCAGGTTG..................................................................................................................................................	20	1	1.00	1	0	1	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTT..............................................................................................................................................	25	1	1.00	1	0	1	0	0
.....................................................................................ACAAGGTAAATATCAGGTTGTTA...............................................................................................................................................	23	1	1.00	1	0	0	0	1
....................................................................................AACAAGGTAAATATCAGGTT...................................................................................................................................................	20	1	1.00	1	0	0	1	0
.....................................................................................ACAAGGTAAATATCAGGTTT..................................................................................................................................................	20	1	1.00	1	0	1	0	0
.............................................................................................................................AAACATCTGTATATACCTTTGA........................................................................................................	22	1	1.00	1	0	1	0	0
....................................................................................AACAAGGTAAATATCAGGTTGTTTA..............................................................................................................................................	25	1	1.00	1	0	0	1	0
.........................................................................................GGTAAATATCAGGTTGTTTT..............................................................................................................................................	20	1	1.00	1	0	1	0	0
....................................................................................AACAAGGTAAATATCAGGTTG..................................................................................................................................................	21	1	1.00	1	0	1	0	0
......................................................................................CAAGGTAAATATCAGGTTGTTTC..............................................................................................................................................	23	1	1.00	1	1	0	0	0
.....................................................................................ACAAGGTAAATATCAGGT....................................................................................................................................................	18	1	1.00	1	0	0	1	0

droYak3

GTGGGTA-------T-----------------------------------C---ACTA-CTGCATTGTTCTTGGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCATC-TTC------AAG----T----TAT--A------TC--C-------------TAT---------GA--------TC--A	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................ACATCTGTATATACCTTTGTTCT.....................................................................................................	23	1	57.00	57	45	12	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACATCTGTATATACCTTTGTTCC.....................................................................................................	23	1	12.00	12	9	2	1	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGGTTGTT................................................................................................................................................	23	1	12.00	12	0	1	0	0	0	0	11	0	0	0	0
....................................................................................AACAAGGTACATATCAGGTTGTTT...............................................................................................................................................	24	1	12.00	12	0	0	1	0	0	0	11	0	0	0	0
....................................................................................AACAAGGTACATATCAGGTTGT.................................................................................................................................................	22	1	11.00	11	1	0	0	0	0	0	9	0	0	1	0
....................................................................................AACAAGGTACATATCAGGTTG..................................................................................................................................................	21	1	3.00	3	1	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................ACATCTGTATATACCTTTGTTC......................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................AAAACAAGGTACATATCAGGTTGTT................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
..................................................................................AAAACAAGGTACATATCAGGTTGT.................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................CATCTGTATATACCTTTGTTCCG....................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TCTGTATATACCTTTGTTCT.....................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGGTTGTTT...............................................................................................................................................	23	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0
..............................................................................................................................AACATCTGTATATACCTTTGTTCT.....................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGGTTGT.................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................AACAAGGTACATATCAGGTT...................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGGT....................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................ACATCTGTATATACCTTTGTTA......................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................AAAACAAGGTACATATCAGGTTG..................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................AACAAGGTACATATCAGGTTGTTTT..............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................AACAAGGTACATATCAGGTTGTTTC..............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0
....................................................................................AACAAGGTACATATCAGGTTGG.................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACATCTGTATATACCTTTGTT.......................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GAGGATGTG-GGCAT-----------------------------------C---AGTG-CTG-CTTGTTCTTAGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTGTATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCATC-TTC------TAG----TTGGTTAC--A------TC--C-TTGC------------------GTTA--------GT--G	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................AACAAGGTACATATCAGGTTG..................................................................................................................................................	21	1	123.00	123	6	0	3	0	94	20	0
....................................................................................AACAAGGTACATATCAGGTTGTTT...............................................................................................................................................	24	1	74.00	74	1	0	3	0	50	20	0
....................................................................................AACAAGGTACATATCAGGTTGTT................................................................................................................................................	23	1	60.00	60	2	0	1	0	45	12	0
....................................................................................AACAAGGTACATATCAGGTTGT.................................................................................................................................................	22	1	52.00	52	0	0	1	0	51	0	0
.....................................................................................ACAAGGTACATATCAGGTTGTT................................................................................................................................................	22	1	23.00	23	0	0	0	0	19	4	0
..................................................................................AAAACAAGGTACATATCAGGTTGTT................................................................................................................................................	25	1	17.00	17	0	0	0	0	8	9	0
.....................................................................................ACAAGGTACATATCAGGTTGTTT...............................................................................................................................................	23	1	15.00	15	1	0	0	0	10	4	0
..................................................................................AAAACAAGGTACATATCAGGT....................................................................................................................................................	21	1	10.00	10	0	0	1	0	9	0	0
.....................................................................................ACAAGGTACATATCAGGTTGT.................................................................................................................................................	21	1	8.00	8	0	0	0	0	6	2	0
....................................................................................AACAAGGTACATATCAGGTTGTTTC..............................................................................................................................................	25	1	7.00	7	0	0	0	2	1	4	0
..................................................................................AAAACAAGGTACATATCAGGTTGT.................................................................................................................................................	24	1	7.00	7	0	0	0	0	5	2	0
...............................................................................................................................ACATCTGTATATACCTTTGTTCT.....................................................................................................	23	1	6.00	6	2	0	1	0	2	1	0
..................................................................................AAAACAAGGTACATATCAGGTTG..................................................................................................................................................	23	1	4.00	4	0	0	0	0	3	1	0
..................................................................................AAAACAAGGTACATATCAGGTT...................................................................................................................................................	22	1	3.00	3	0	0	0	0	2	1	0
.....................................................................................ACAAGGTACATATCAGGTTGTTTC..............................................................................................................................................	24	1	2.00	2	1	0	0	0	1	0	0
................................................................................................................................CATCTGTATATACCTTTGTTCCG....................................................................................................	23	1	2.00	2	0	0	1	0	1	0	0
...............................................................................................................................ACATCTGTATATACCTTTGTTCC.....................................................................................................	23	1	2.00	2	0	1	0	0	0	1	0
..............................................................................................................................AACATCTGTATATACCTTTGTT.......................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGGTTGTTC...............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
....................................................................................AACAAGGTACATATCAGGTTGTC................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................ACATCTGTATATACCTTTGTTC......................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGGTTG..................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGGTTGTTTT..............................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................CATCTGTATATACCTTTGTTCC.....................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................ACATCTGTATATACCTTTG.........................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0

dp5

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A

Size

Hit Count

Total Norm

Total

M022

Male-body

M040

Female-body

M059

Embryo

M062

Head

V043

Embryo

V051

Head

V112

Male-body

SRR902010

Ovary

SRR902011

Testis

SRR902012

CNS imaginal disc

No Reads

droPer2

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

ATCATTATTAATCA----TAGTTAATTGAGTT----------------------------AATTGAATTCTAATTCTAGTCTAAAACAAGGTACATATCAGGTTGTTTCGTATATTTGAAGCCTGAAACATCTGTATCTACCTTTGTTTCGAATAGGACTAA--AGAGTTTTCTTTAAGCCCAAC----A------C--A------TTTGTTGT---------CTGT---------GT--------CA--G	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................ACAAGGTACATATCAGGTTGTT................................................................................................................................................	22	1	27.00	27	3	1	19	0	4
....................................................................................AACAAGGTACATATCAGGTTGT.................................................................................................................................................	22	1	26.00	26	5	1	18	1	1
....................................................................................AACAAGGTACATATCAGGTTGTT................................................................................................................................................	23	1	13.00	13	2	0	7	0	4
.....................................................................................ACAAGGTACATATCAGGTTGTTT...............................................................................................................................................	23	1	8.00	8	4	1	3	0	0
....................................................................................AACAAGGTACATATCAGGTTGTTT...............................................................................................................................................	24	1	6.00	6	0	1	3	2	0
...............................................................................................................................ACATCTGTATCTACCTTTGTTTT.....................................................................................................	23	1	3.00	3	0	2	1	0	0
....................................................................................AACAAGGTACATATCAGGTTG..................................................................................................................................................	21	1	3.00	3	0	0	2	1	0
...............................................................................................................................ACATCTGTATCTACCTTTGTTT......................................................................................................	22	1	3.00	3	0	1	1	0	1
.....................................................................................ACAAGGTACATATCAGGTTGT.................................................................................................................................................	21	1	2.00	2	0	0	2	0	0
.....................................................................................ACAAGGTACATATCAGGTTGTTTC..............................................................................................................................................	24	1	2.00	2	0	0	0	1	1
....................................................................................AACAAGGTACATATCAGGTTGC.................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................ACATCTGTATCTACCTTTGTT.......................................................................................................	21	1	1.00	1	0	0	1	0	0
..............................................................................................................................AACATCTGTATCTACCTTTGT........................................................................................................	21	1	1.00	1	0	0	1	0	0
.....................................................................................ACAAGGTACATATCAGGTTGTTC...............................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.....................................................................................ACAAGGTACATATCAGGTTG..................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
......................................................................................CAAGGTACATATCAGGTTGTT................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................AAGGTACATATCAGGTTGTTT...............................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.....................................................................................ACAAGGTACATATCAGGTTGTTTCA.............................................................................................................................................	25	1	1.00	1	0	0	0	1	0

droVir3

AGAAATTGGAGTTAATGTA-------------------------------C---GGAT-GGGCATAAACAACAATCTAATCTGAAACAAGGTACATATCAGAGTGTTTCTTAAATTTGATTATTGAAACCTCTGTATATACCTTTCATTGGATT-AAACTGA--TAAGCACA-TGT------TTC----AAA----------AGTTTT--C-ATAT----------T---------GA--------AA--A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................AACAAGGTACATATCAGAGTGTTT...............................................................................................................................................	24	1	75701.00	75701	7	0	75	4	99	3643	99	677	20	2374	7	3	0	8	13	4	2	19	14	1	6052	17	7	49	57	48	118	94	16820	12587	3819	13729	2	5635	2	0	6	0	91	7268	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	5	25	2135	0	8	10	0	0	0	1	14	12	2	8	8	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTC..............................................................................................................................................	25	1	17368.00	17368	1	0	10	0	28	1039	15	934	35	2775	3	1	0	0	0	0	0	0	0	0	1393	4	2	22	6	11	16	17	2504	1904	713	2377	0	1332	0	0	0	0	22	1482	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	1	706	0	0	0	0	0	0	2	3	3	1	2	1	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTCC.............................................................................................................................................	26	1	15595.00	15595	1	0	11	0	23	1329	17	2	16	1331	3	0	0	0	1	0	0	0	3	0	1715	4	0	15	1	6	8	2	1579	1540	928	2943	0	1623	1	0	0	0	20	1639	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	832	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTC...............................................................................................................................................	24	1	13609.00	13609	1	0	10	0	20	1035	8	5	24	2156	4	1	0	2	0	0	0	1	1	0	1214	0	0	19	3	0	8	8	1706	1730	549	1761	0	1240	0	0	0	0	8	1411	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	670	3	0	1	0	0	0	0	4	1	1	2	1	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGT.................................................................................................................................................	22	1	9406.00	9406	4	0	59	1	33	384	26	109	3	198	0	9	3	14	0	0	0	1	0	0	572	0	0	39	15	20	41	31	1487	1748	652	1851	1	573	5	2	23	3	20	874	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	3	500	0	9	24	0	0	0	12	6	14	2	12	16	1	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTT................................................................................................................................................	23	1	5659.00	5659	0	0	11	0	15	184	10	246	3	341	0	0	0	2	2	0	1	7	0	1	357	1	0	24	3	15	33	17	1174	1137	220	873	0	412	1	0	1	1	13	349	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	177	0	2	4	0	0	0	4	3	4	0	5	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTCCC............................................................................................................................................	27	1	5609.00	5609	0	0	6	0	4	406	6	0	1	86	0	0	0	0	2	0	0	0	2	0	468	2	0	3	0	0	3	5	407	571	557	1587	0	687	0	0	0	0	3	697	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	106	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTCCCC...........................................................................................................................................	28	1	1772.00	1772	0	0	4	0	3	122	2	0	0	4	0	0	0	0	0	0	0	0	2	0	17	0	0	0	0	2	0	0	98	167	313	716	0	77	0	0	0	0	2	217	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTT..............................................................................................................................................	25	1	709.00	709	0	0	1	0	2	21	2	36	0	39	0	0	0	3	1	1	0	1	0	0	32	0	1	0	0	1	5	7	147	123	31	94	0	53	0	0	0	0	7	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTTCC............................................................................................................................................	27	1	708.00	708	0	0	0	0	0	26	1	0	0	43	0	0	0	0	0	0	0	0	0	0	26	0	0	0	1	0	0	1	115	143	45	182	0	40	0	0	0	0	4	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGAGTGTTTC..............................................................................................................................................	24	1	640.00	640	0	0	2	0	4	44	2	61	3	126	0	0	0	0	0	0	0	0	0	0	37	0	0	1	0	0	2	3	109	68	11	73	0	27	0	0	0	0	1	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTG..................................................................................................................................................	21	1	623.00	623	2	0	3	0	0	10	0	9	0	10	0	0	0	0	0	0	0	0	0	0	41	0	0	1	4	0	4	3	103	86	47	166	0	29	0	0	1	0	0	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	9	0	0	2	0	0	0	5	6	6	1	4	3	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGAGTGTTT...............................................................................................................................................	23	1	603.00	603	0	0	6	0	1	29	1	10	0	21	0	0	0	0	0	0	0	0	0	0	45	1	1	3	0	1	2	0	135	119	29	105	0	41	0	0	0	0	1	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTTC.............................................................................................................................................	26	1	522.00	522	0	0	0	0	1	21	1	0	0	90	0	0	0	0	0	0	0	0	0	0	35	0	0	0	0	1	2	2	102	102	23	75	0	21	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGAGTGTTTCC.............................................................................................................................................	25	1	472.00	472	0	0	1	0	1	31	0	1	0	51	0	0	0	0	0	0	0	0	1	0	60	0	0	0	0	1	0	0	66	46	26	80	0	38	0	0	0	0	1	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACCTCTGTATATACCTTTCATT......................................................................................................	22	1	222.00	222	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	73	54	21	45	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	3	8	2	3	2	0	0	0	1	0
....................................................................................AACAAGGTACATATCAGAGT...................................................................................................................................................	20	1	196.00	196	0	0	0	0	0	7	1	0	0	1	0	0	0	0	0	0	0	0	0	0	25	0	0	2	0	0	0	0	34	27	6	25	0	25	0	0	0	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTC................................................................................................................................................	23	1	179.00	179	0	0	0	0	0	27	0	1	1	18	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	12	17	7	19	0	18	0	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTCT.............................................................................................................................................	26	1	176.00	176	0	0	0	0	1	3	0	6	0	10	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	1	42	37	20	30	0	8	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTCC...............................................................................................................................................	24	1	146.00	146	0	0	0	0	1	23	0	0	0	10	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	6	8	2	18	0	19	0	0	0	0	1	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGAGTGTTTCCC............................................................................................................................................	26	1	143.00	143	0	0	0	0	0	10	0	0	0	3	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	14	17	6	36	0	26	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGAGTGTTC...............................................................................................................................................	23	1	126.00	126	0	0	0	0	0	8	0	0	0	18	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	10	10	5	19	0	12	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CAAGGTACATATCAGAGTGTTT...............................................................................................................................................	22	1	103.00	103	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	20	23	3	16	0	10	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTCA.............................................................................................................................................	26	1	103.00	103	0	0	0	0	1	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	1	1	0	17	13	11	17	0	7	0	1	0	0	1	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTCCCT...........................................................................................................................................	28	1	99.00	99	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	18	17	13	44	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTCT..............................................................................................................................................	25	1	94.00	94	0	0	0	0	0	9	0	0	0	9	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	1	2	15	10	3	12	0	11	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................GTACATATCAGAGTGTTT...............................................................................................................................................	18	1	88.00	88	0	0	1	0	2	5	0	1	0	2	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	6	20	2	2	0	11	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGGTACATATCAGAGTGTTTCC.............................................................................................................................................	22	1	83.00	83	0	0	0	0	0	6	0	0	0	28	1	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	1	0	1	0	16	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GGTACATATCAGAGTGTTT...............................................................................................................................................	19	1	69.00	69	0	0	0	0	0	11	0	0	0	4	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	4	4	0	1	0	10	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACCTCTGTATATACCTTTCATT......................................................................................................	23	1	64.00	64	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	32	7	7	8	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................AAGGTACATATCAGAGTGTTT...............................................................................................................................................	21	1	64.00	64	0	0	0	0	1	3	0	4	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	12	8	4	9	0	9	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTCTCC...........................................................................................................................................	28	1	62.00	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	7	10	22	0	3	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................GTACATATCAGAGTGTTTC..............................................................................................................................................	19	1	60.00	60	0	0	0	0	0	5	0	7	0	27	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	4	1	0	0	4	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTA..............................................................................................................................................	25	1	52.00	52	0	0	0	0	0	2	0	2	0	2	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	1	0	7	5	4	10	0	8	0	0	1	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGAGTGTT................................................................................................................................................	22	1	49.00	49	0	0	2	0	0	1	0	1	2	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	7	3	4	10	0	2	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGAGTGTTTCCCC...........................................................................................................................................	27	1	46.00	46	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	2	2	7	13	0	5	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTCTC............................................................................................................................................	27	1	45.00	45	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	8	2	10	0	7	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTA...............................................................................................................................................	24	1	42.00	42	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	2	4	4	1	4	6	0	4	1	0	1	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACCTCTGTATATACCTTTCATC......................................................................................................	23	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	6	4	12	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACCTCTGTATATACCTTTCATTC.....................................................................................................	23	1	33.00	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	4	9	3	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TACATATCAGAGTGTTTCC.............................................................................................................................................	19	1	33.00	33	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTCA..............................................................................................................................................	25	1	32.00	32	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	9	2	2	2	0	3	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGGTACATATCAGAGTGTTT...............................................................................................................................................	20	1	32.00	32	0	0	0	0	0	5	0	1	0	2	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	1	3	0	2	0	5	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AAGGTACATATCAGAGTGTTTCC.............................................................................................................................................	23	1	26.00	26	0	0	0	0	0	1	0	0	0	8	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	1	1	7	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................GTACATATCAGAGTGTTC...............................................................................................................................................	18	2	26.00	52	0	0	0	0	0	4	0	0	0	27	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	13	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACCTCTGTATATACCTTTCATC......................................................................................................	22	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	5	2	5	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAG....................................................................................................................................................	19	1	24.00	24	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	6	1	2	5	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CAAGGTACATATCAGAGTGTTTC..............................................................................................................................................	23	1	24.00	24	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	1	0	2	2	2	3	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTG..............................................................................................................................................	25	1	23.00	23	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	5	5	0	3	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AAGGTACATATCAGAGTGTTTC..............................................................................................................................................	22	1	23.00	23	0	0	0	0	0	1	1	4	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	2	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACCTCTGTATATACCTTTCAT.......................................................................................................	22	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	5	7	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	0	0	0	0
.......................................................................................AAGGTACATATCAGAGTGTTC...............................................................................................................................................	21	1	19.00	19	0	0	0	0	0	8	0	0	0	5	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CAAGGTACATATCAGAGTGTTTCC.............................................................................................................................................	24	1	19.00	19	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	6	0	1	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGA.....................................................................................................................................................	18	1	19.00	19	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	5	4	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGAGTGT.................................................................................................................................................	21	1	18.00	18	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	2	6	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTCCA............................................................................................................................................	27	1	18.00	18	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	3	3	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACCTCTGTATATACCTTTCAT.......................................................................................................	21	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACCTCTGTATATACCTTTCATTC.....................................................................................................	24	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGGTACATATCAGAGTGTTC...............................................................................................................................................	20	2	14.00	28	0	0	0	0	0	6	1	0	0	7	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	1	1	0	0	2	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTCG.............................................................................................................................................	26	1	13.00	13	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	2	2	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGC.................................................................................................................................................	22	1	13.00	13	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	1	2	0	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTT..................................................................................................................................................	21	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TACATATCAGAGTGTTTC..............................................................................................................................................	18	1	12.00	12	0	0	0	0	0	1	0	1	0	3	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGGTACATATCAGAGTGTTTC..............................................................................................................................................	21	1	12.00	12	0	0	0	0	1	2	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................GTACATATCAGAGTGTTTCC.............................................................................................................................................	20	1	12.00	12	0	0	0	0	0	2	0	0	0	4	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGGTACATATCAGAGTGTTTCCC............................................................................................................................................	23	1	12.00	12	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTAA..............................................................................................................................................	25	1	11.00	11	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	2	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTCTC.............................................................................................................................................	26	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	3	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ACATATCAGAGTGTTTCC.............................................................................................................................................	18	1	10.00	10	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTG...............................................................................................................................................	24	1	10.00	10	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GGTACATATCAGAGTGTT................................................................................................................................................	18	1	10.00	10	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	1	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTAA.............................................................................................................................................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TACATATCAGAGTGTTTCCCC...........................................................................................................................................	21	3	8.67	26	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TACATATCAGAGTGTTTCCC............................................................................................................................................	20	2	8.50	17	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGG.................................................................................................................................................	22	1	8.00	8	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGAGTGTTTCT.............................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGGTACATATCAGAGTGT.................................................................................................................................................	18	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTAAA.............................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AAGGTACATATCAGAGTGTT................................................................................................................................................	20	1	7.00	7	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CAAGGTACATATCAGAGTGTTC...............................................................................................................................................	22	1	6.00	6	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATGAGAAA---TGAA-----GGGAATCGGGTTAACTTTGGCAATTGGAGTG---CGCA-CTGA------ATCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATT-CAACCGAA-AGTCCAT--AAA------TAT--------TGATATA---------------TGATGA-TGATT---------TTCCAATTG-TG--A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................ACAAGGTACATATCAGAGTGTTTC..............................................................................................................................................	24	1	7545.00	7545	6	0	54	95	1	7389
....................................................................................AACAAGGTACATATCAGAGTGTTTC..............................................................................................................................................	25	1	3143.00	3143	1	0	6	18	1	3117
....................................................................................AACAAGGTACATATCAGAGTGTTT...............................................................................................................................................	24	1	1495.00	1495	9	0	18	29	0	1439
.....................................................................................ACAAGGTACATATCAGAGTGTTT...............................................................................................................................................	23	1	974.00	974	6	0	4	19	0	945
....................................................................................AACAAGGTACATATCAGAGTGT.................................................................................................................................................	22	1	522.00	522	0	0	1	7	0	514
.....................................................................................ACAAGGTACATATCAGAGTGTTTCC.............................................................................................................................................	25	1	294.00	294	1	0	1	5	0	287
....................................................................................AACAAGGTACATATCAGAGTGTT................................................................................................................................................	23	1	236.00	236	1	0	1	3	0	231
....................................................................................AACAAGGTACATATCAGAGTGTTTCC.............................................................................................................................................	26	1	177.00	177	0	0	0	0	0	177
.....................................................................................ACAAGGTACATATCAGAGTGTT................................................................................................................................................	22	1	144.00	144	0	0	0	3	0	141
.....................................................................................ACAAGGTACATATCAGAGTGTTC...............................................................................................................................................	23	1	73.00	73	0	0	1	0	0	72
....................................................................................AACAAGGTACATATCAGAGTGTTTT..............................................................................................................................................	25	1	59.00	59	0	0	0	0	0	59
....................................................................................AACAAGGTACATATCAGAGTGTTC...............................................................................................................................................	24	1	58.00	58	0	0	0	0	0	58
.....................................................................................ACAAGGTACATATCAGAGTGTTTCT.............................................................................................................................................	25	1	51.00	51	0	0	0	1	0	50
....................................................................................AACAAGGTACATATCAGAGTGTTTCT.............................................................................................................................................	26	1	36.00	36	0	0	0	0	0	36
.....................................................................................ACAAGGTACATATCAGAGTGTTTCA.............................................................................................................................................	25	1	22.00	22	0	0	0	2	0	20
.....................................................................................ACAAGGTACATATCAGAGTGTTTT..............................................................................................................................................	24	1	21.00	21	0	0	1	0	0	20
....................................................................................AACAAGGTACATATCAGAGTG..................................................................................................................................................	21	1	16.00	16	1	0	0	0	0	15
....................................................................................AACAAGGTACATATCAGAGTGTTTCCC............................................................................................................................................	27	1	15.00	15	0	0	0	0	0	15
....................................................................................AACAAGGTACATATCAGAGTGTTTCA.............................................................................................................................................	26	1	14.00	14	0	0	0	0	0	14
....................................................................................AACAAGGTACATATCAGAGTGTTTTT.............................................................................................................................................	26	1	13.00	13	0	0	0	0	0	13
.....................................................................................ACAAGGTACATATCAGAGTGTTTCCC............................................................................................................................................	26	1	12.00	12	0	0	0	0	0	12
......................................................................................CAAGGTACATATCAGAGTGTTTC..............................................................................................................................................	23	1	12.00	12	1	0	0	1	0	10
.....................................................................................ACAAGGTACATATCAGAGTGT.................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	9
.....................................................................................ACAAGGTACATATCAGAGTGTTTA..............................................................................................................................................	24	1	9.00	9	0	0	0	0	0	9
......................................................................................CAAGGTACATATCAGAGTGTTT...............................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3
.....................................................................................ACAAGGTACATATCAGAGTGTTTCCCC...........................................................................................................................................	27	1	3.00	3	0	0	0	0	0	3
....................................................................................AACAAGGTACATATCAGAGTGTTCT..............................................................................................................................................	25	1	3.00	3	0	0	0	0	0	3
.....................................................................................ACAAGGTACATATCAGAGT...................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
.....................................................................................ACAAGGTACATATCAGAGTG..................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
..........................................................................................GTACATATCAGAGTGTTTC..............................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
...............................................................................................................................ACCTCTGTATATACCTTTCATT......................................................................................................	22	1	2.00	2	1	0	0	0	0	1
.....................................................................................ACAAGGTACATATCAGAGTGTTCT..............................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
....................................................................................AACAAGGTACATATCAGAGT...................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
.....................................................................................ACAAGGTACATATCAGAGTGTTTTT.............................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
....................................................................................AACAAGGTACATATCAGAGTGTC................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
.....................................................................................ACAAGGTACATATCAGAGTGTC................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
....................................................................................AACAAGGTACATATCAGAGTGTTTCCCC...........................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2
.....................................................................................ACAAGGTACATATCAGAGTGTTTCCA............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
......................................................................................CAAGGTACATATCAGAGTGTTC...............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
....................................................................................AACAAGGTACATATCAGAGTGTTTG..............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................AAGGTACATATCAGAGTGTTTC..............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.....................................................................................ACAAGGTACATATCAGAGTGTTG...............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
....................................................................................AACAAGGTACATATCAGAGTGA.................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.....................................................................................ACAAGGTACATATCAGAGTGTTTCATT...........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.........................................................................................GGTACATATCAGAGTGTTTC..............................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................ACAAGGTACATATCAGAGTGTTTG..............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................AACCTCTGTATATACCTTTCATT......................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................AAGGTACATATCAGAGTGT.................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.......................................................................................AAGGTACATATCAGAGTGTTT...............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................AACAAGGTACATATCAGAGTGTTTCCT............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
......................................................................................CAAGGTACATATCAGAGTGTTTCCC............................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................AACAAGGTACATATCAGAGTGTTTTTT............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................AACCTCTGTATATACCTTTCATC......................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................TACATATCAGAGTGTTTCT.............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................ACCTCTGTATATACCTTTCATTC.....................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................AGTGTTTCCCGTATTCGAGTTTTGA.............................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..........................................................................................GTACATATCAGAGTGTTC...............................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
....................................................................................AACAAGGTACATATCAGAGTGTTTA..............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.....................................................................................ACAAGGTACATATCAGAGTGTTTCCTCC..........................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0

droGri2

TGCAGAACAAATAA----AAGATTAGAAAGTGAACAGTGAACATAACA------------AAGCAAAATAACAGTCTAATCCAAAACAAGGTACATATTAGAGCGTTTCCTATCTTTGAGTATTGAAACCTCTGTATATACCTTCAT-TCGATT-CGACTGA--TAATCTCA-TTA--------------AAATCAT--T-------T--C-AGTTG-----AT-------TAGAAGA--------GT--G	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................AACAAGGTACATATTAGAGCGTTTC..............................................................................................................................................	25	1	39.00	39	1	38
....................................................................................AACAAGGTACATATTAGAGCGTTT...............................................................................................................................................	24	1	20.00	20	7	13
....................................................................................AACAAGGTACATATTAGAGCGT.................................................................................................................................................	22	1	19.00	19	1	18
....................................................................................AACAAGGTACATATTAGAGCGTT................................................................................................................................................	23	1	14.00	14	3	11
....................................................................................AACAAGGTACATATTAGAGCGTTTCT.............................................................................................................................................	26	1	7.00	7	0	7
....................................................................................AACAAGGTACATATTAGAGCGC.................................................................................................................................................	22	1	1.00	1	0	1
....................................................................................AACAAGGTACATATTAGAGCG..................................................................................................................................................	21	1	1.00	1	1	0
..............................................................................................................................AACCTCTGTATATACCTTCAT-.......................................................................................................	21	1	1.00	1	1	0
.....................................................................................ACAAGGTACATATTAGAGCGTTTC..............................................................................................................................................	24	1	1.00	1	0	1
................................................................................................................................CCTCTGTATATACCTTCAT-T......................................................................................................	20	1	1.00	1	1	0
....................................................................................AACAAGGTACATATTAGAGCGTTTT..............................................................................................................................................	25	1	1.00	1	0	1
..............................................................................................................................AACCTCTGTATATACCTTCAT-T......................................................................................................	22	1	1.00	1	1	0
.....................................................................................ACAAGGTACATATTAGAGCGTTTCA.............................................................................................................................................	25	1	1.00	1	0	1
...............................................................................................................................ACCTCTGTATATACCTTCAT-T......................................................................................................	21	1	1.00	1	1	0

dan_98

scaffold_12916:11085461-11085523 +

Known Ortholog

Testes-restricted

antisense_to_intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.5	-19.5	-19.4