ID:

dan_97

 Coordinate:

scaffold_13337:20570524-20570583 -

 Confidence:

candidate

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.0 -23.0 -22.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GAAGCCCAATATATTCTATTAAGTTCTGAGATCTTTCAGTGAATTCAAACAGGGTACGATCAAAACAACTTTTTATTTTTAAAGAAAATTATTTTGCTCATACCAGTGTTTGGATTGGCGAATGGAAACAAGTTGAATACTAGATATGAAGTTATTGCTA

***********************************...((.((((((((((.((((.((.(((((.((.((((((....))))))...)).))))).)).))))..)))))))))).)).....************************************ 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 V055

head

 M044

female body
......................................................................................AATTATTTTGCTCATACCAGTGT................................................... 23 0 1 26.00 26 26 0 0
.......................................................................................ATTATTTTGCTCATACCAGTGT................................................... 22 0 1 17.00 17 16 0 1
.......................................................................................ATTATTTTGCTCATACCAGTGTT.................................................. 23 0 1 4.00 4 3 1 0
......................................................................................AATTATTTTGCTCATACCAGT..................................................... 21 0 1 3.00 3 2 1 0
.......................................................................................ATTATTTTGCTCATACCAGTGTTT................................................. 24 0 1 1.00 1 0 0 1
.......................................................................................ATTATTTTCCTCATACCAGTGT................................................... 22 1 1 1.00 1 1 0 0
..................................................AGGGTACGATCAAAACAACTTT........................................................................................ 22 0 1 1.00 1 1 0 0
.......................................................................................ATTATTTTGCTGATACCAGTGT................................................... 22 1 1 1.00 1 1 0 0
................TATTACAGTCTGAGATCTTTC........................................................................................................................... 21 3 2 0.50 1 0 1 0
........................................................................................................................AATGGAAGCAGGTTGTATACT................... 21 3 5 0.20 1 0 1 0
.........................................................................................................................ATGGGAACACGTTAAATACT................... 20 3 9 0.11 1 0 1 0

Anti-sense strand reads

CTTCGGGTTATATAAGATAATTCAAGACTCTAGAAAGTCACTTAAGTTTGTCCCATGCTAGTTTTGTTGAAAAATAAAAATTTCTTTTAATAAAACGAGTATGGTCACAAACCTAACCGCTTACCTTTGTTCAACTTATGATCTATACTTCAATAACGAT

************************************...((.((((((((((.((((.((.(((((.((.((((((....))))))...)).))))).)).))))..)))))))))).)).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13337:20570474-20570633 - dan_97 candidate GAAGCC-CAATATATTCTATTAAGTTCTGAGATCTTTCAGTGAATTCAAACAGGGTACGATCAAAACAACTTTTTATT------TTTAAAGAAAATTATTTTGCTCATACCAGTGTTTGGATTGGCGAATGGAAACAAGTTGAATACTAGATATGAAGTTATTGCTA
droBip1 scf7180000396707:859994-860146 + ACAGCCTCAAAATACTTTATTAAATCCTGAGGTCTTGCATCGAATTATTAGAGGGTACGATCAAAAAACCTTTTCTTTACATATCCTGTTAAAAGTTTTTTTGTTCGTACCAGGATTGGGATTGGCGAATAGAAACCAGATGAGCTCTGATT--------------G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GAAGCC-CAATATATTCTATTAAGTTCTGAGATCTTTCAGTGAATTCAAACAGGGTACGATCAAAACAACTTTTTATT------TTTAAAGAAAATTATTTTGCTCATACCAGTGTTTGGATTGGCGAATGGAAACAAGTTGAATACTAGATATGAAGTTATTGCTASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.............................................................................................AATTATTTTGCTCATACCAGTGT...................................................23126.00260000260
..............................................................................................ATTATTTTGCTCATACCAGTGT...................................................22117.00171000160
..............................................................................................ATTATTTTGCTCATACCAGTGTT..................................................2314.004000130
.............................................................................................AATTATTTTGCTCATACCAGT.....................................................2113.003000120
..............................................................................................ATTATTTTGCTCATACCAGTGTTT.................................................2411.001100000
...................................................AGGGTACGATCAAAACAACTTT..............................................................................................2211.001000010
droBip1
ACAGCCTCAAAATACTTTATTAAATCCTGAGGTCTTGCATCGAATTATTAGAGGGTACGATCAAAAAACCTTTTCTTTACATATCCTGTTAAAAGTTTTTTTGTTCGTACCAGGATTGGGATTGGCGAATAGAAACCAGATGAGCTCTGATT--------------GSizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 06:52 PM