ID:

dan_955

 Coordinate:

scaffold_12943:4161609-4161759 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_922:11]; CDS [Dana\GF24504-cds]; intron [Dana\GF24504-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATTATCTTTTTGGTTCTTTTTAATTTTACCTCATACCAAAATTGAAAAAAAAAAATGTATTAACCAAAAACCGAATTGAAAATTTTTACTAAACCAAAAATCATTTCTTTTTTCGCGCATTTCTTTCGCAAATTTCCCCCAAAAAAACAAAAACAATCCACAAAACACCACCAAAAAAAATATAAAAAAAATCATCGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
**************************************************...((((((.............((((..((((((((((........))))))..))))....)))).))))))..............................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 M044
female body
 V055
head
......................................................................................TGACTAGACCAAAAATCATT................................................................................................................................................. 20 2 1 1.00 1 0 1 0 0
......................................................................................................................................................................................................CAGCGAGCTCCCCATTCGCCCGCCGC........................... 26 1 1 1.00 1 0 0 1 0
...........................................................................................................................................................AATCCACGATACACCACCAAA........................................................................... 21 2 1 1.00 1 1 0 0 0
...............................................AAAAAAAAATGTATTAACCAAAAACCGA................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................AAAAACAAGCCACTAAAGACCAC............................................................................... 23 3 2 0.50 1 1 0 0 0
................................................................................................................................................AAAACAAAAAAAAGCCATAAAACACCA................................................................................ 27 3 2 0.50 1 1 0 0 0
.......................................................................................................................................................AAAGAATCCAAAAAACACCGCCA............................................................................. 23 3 2 0.50 1 1 0 0 0
...............................TGTTACCAAAATTGAAAAAAAAA..................................................................................................................................................................................................... 23 2 2 0.50 1 1 0 0 0
..................................................................................................................................................................AAAAGACCACCAAAAAAAA...................................................................... 19 1 3 0.33 1 1 0 0 0
.........................................................................................................................................................ACAACCTACAAAACACCACCAA............................................................................ 22 2 3 0.33 1 1 0 0 0
.....................................................................................................................................................AAAAACAACCCACAAAACAC.................................................................................. 20 1 4 0.25 1 1 0 0 0
..................................................................................................................................................................AAAACACGACCAAAAAAAA...................................................................... 19 1 5 0.20 1 1 0 0 0
................................GATACCAAAATTGATCAAAAAAA.................................................................................................................................................................................................... 23 3 5 0.20 1 1 0 0 0
............................................................................................................................................................ATCGACACAACACCACAAAAAA......................................................................... 22 3 5 0.20 1 1 0 0 0
.............................................................................................................................................AAAAAAACAAAAACAACCCAC......................................................................................... 21 1 5 0.20 1 1 0 0 0
...........................................................................................................................................CCAAAAAAACAAGAACAAACC........................................................................................... 21 2 6 0.17 1 1 0 0 0
..............................................................................................................................................AAAAAACAAGAACAACCCACAA....................................................................................... 22 2 6 0.17 1 1 0 0 0
...........................................................................................................................................................ATTCCACAAAAGACCACCACA........................................................................... 21 3 6 0.17 1 1 0 0 0
........................................................................................................................................................AACAATTCACAAATCACCA................................................................................ 19 2 6 0.17 1 1 0 0 0
........................................................................................................................................................AACAAGCCAAAAAACACCAC............................................................................... 20 2 6 0.17 1 1 0 0 0
.....................................................................................................................................................AAAAACGATCCACCAAACA................................................................................... 19 2 7 0.14 1 1 0 0 0
.......................................................................................................................................................AAATAATACACTAAACACCACC.............................................................................. 22 3 7 0.14 1 1 0 0 0
.............................................................................................................................................AAAGAAACTAAAACGATCCAC......................................................................................... 21 3 8 0.13 1 1 0 0 0
..............................................................................................................................................AGAAAACAAAAACAATGCACA........................................................................................ 21 2 10 0.10 1 0 1 0 0
..............................................................................................................................................................................................................................GCCAACGCCAGATCGAGGGT......... 20 3 10 0.10 1 0 0 0 1
................................................................................................................................................AAAACAAAAACAACCCACCAAA..................................................................................... 22 2 13 0.08 1 1 0 0 0
......................................................................................................................................................AAAACAAGACAAAAAACACCACC.............................................................................. 23 3 14 0.07 1 1 0 0 0
..................................................................................................................................................................AAGAGACCACCAAAAAAAAT..................................................................... 20 2 17 0.06 1 0 1 0 0
.....................................................................................................................................................GAAAACGAACCACAAAACACC................................................................................. 21 3 18 0.06 1 1 0 0 0
.................................................................................................................................................................AAAAACACCACCAAAAAAA....................................................................... 19 1 18 0.06 1 1 0 0 0
................................................................................................................................................AAAACAATAACAATCCAAAA....................................................................................... 20 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................CAAGGAACACCACCAAAAAAA....................................................................... 21 3 20 0.05 1 1 0 0 0
.................................................................................................................................................................CACAACCCCACCAAAAAAAA...................................................................... 20 2 20 0.05 1 1 0 0 0
................................................................................................................................................AAAACAAAAACAACCCAC......................................................................................... 18 1 20 0.05 1 1 0 0 0
.................................................................................................................................................AAACAAAAACAACCCAGAAAA..................................................................................... 21 2 20 0.05 1 1 0 0 0
...............................................................................................................................................AAAAACAAAAGCAAACCACAAA...................................................................................... 22 2 20 0.05 1 0 1 0 0
...................................................................................................................................................ACAAAGACAACCCACAAAA..................................................................................... 19 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAAAAAACACCACCAAAAAAAA...................................................................... 22 2 20 0.05 1 0 1 0 0
................................................................................................................................................AGAACAAAAACAACCCACCAAA..................................................................................... 22 3 20 0.05 1 1 0 0 0
................................................................................................................................................................AGAAAACACCCCCAAAAAAA....................................................................... 20 2 20 0.05 1 1 0 0 0
..................................................................................................................................................................AAAACACAACCAAAAAAAA...................................................................... 19 1 20 0.05 1 1 0 0 0
..................................................................................................................................................................AGAAGACCACCAAAAAAAA...................................................................... 19 2 20 0.05 1 1 0 0 0
.................................................................................................................................................................AAAAAGACCACCAAAAAAAA...................................................................... 20 2 20 0.05 1 1 0 0 0
...................................................................................................................................................................TAACACCACCAAAAAAAAC..................................................................... 19 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

GTAATAGAAAAACCAAGAAAAATTAAAATGGAGTATGGTTTTAACTTTTTTTTTTTACATAATTGGTTTTTGGCTTAACTTTTAAAAATGATTTGGTTTTTAGTAAAGAAAAAAGCGCGTAAAGAAAGCGTTTAAAGGGGGTTTTTTTGTTTTTGTTAGGTGTTTTGTGGTGGTTTTTTTTATATTTTTTTTAGTAGCATCGCTCGAGGGGTAAGCGGGCGGCGGTTGCGGTCTAGTTCACGGTAGGAGTA
**************************************************...((((((.............((((..((((((((((........))))))..))))....)))).))))))..............................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 M058
embryo
 V055
head
 V106
head
 V039
embryo
............................................................................................................................................................................................................CAAGGGGCAAGCGAGCGGCG........................... 20 3 1 151.00 151 142 7 2 0 0 0
............................................................................................................................................................................................................CAAGGGGCAAGCGAGCGGC............................ 19 3 15 16.53 248 217 27 1 3 0 0
..............................................................................................................................................................................................................AGGGGCAAGCGAGCGGCG........................... 18 2 4 6.50 26 26 0 0 0 0 0
..............................................................................................................................................................................................................AGGGGCAAGCGAGCGGCGAT......................... 20 3 3 4.00 12 12 0 0 0 0 0
..............................................................................................................................................................................................................AGGGGCAAGCGAGCGGCGA.......................... 19 3 20 3.10 62 58 2 0 2 0 0
............................................................................................................................................................................................................CAAGGGGCAAGCGGGCGGCGAT......................... 22 3 2 1.50 3 3 0 0 0 0 0
...............................................................................................................................................................................................................GGGGCAAGCGAGCGGCGAT......................... 19 3 14 1.21 17 17 0 0 0 0 0
............................................................................................................................................................................................................CAAGGGGTAAGCGAGCGGC............................ 19 2 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................CGAGGGGCAAGCGAGCGGC............................ 19 2 2 0.50 1 1 0 0 0 0 0
...ATAGACAAACCAAGAAAA...................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 1 0 0 0
.....AGAAAAACCAAGAATAAT.................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 1 0 0 0
..............................................................................................................................................................................................................AGGGGCAAGCGAGCGGCGG.......................... 19 2 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................................AAGGGGCAAGCGAGCGGCG........................... 19 3 17 0.41 7 7 0 0 0 0 0
.............................................................................................................................................................................................................AAGGGGCAAGCGGGCGGCGAT......................... 21 3 3 0.33 1 1 0 0 0 0 0
......................................................................................AATGATTAGGTTTTTAGAAA................................................................................................................................................. 20 2 4 0.25 1 0 0 0 1 0 0
..............AGGAAAAATAAAAATGGAGTA........................................................................................................................................................................................................................ 21 2 4 0.25 1 0 0 0 0 1 0
..............................................................................................................................................................................................................AGGGGCAAGCGAGCGGC............................ 17 2 18 0.22 4 0 0 0 4 0 0
............................................................................................................................................................................................................CAAGGGGCAAGCGCGCGGC............................ 19 3 5 0.20 1 1 0 0 0 0 0
............................................................................................................................................................TAGGTGTTTGGTGGTGGGTT........................................................................... 20 2 6 0.17 1 1 0 0 0 0 0
...................................................TTTTGATATAATTGGGTTTTGG.................................................................................................................................................................................. 22 3 8 0.13 1 0 0 0 1 0 0
...........................................................................................................................................................................................................ACGAGGGGCAAGCGAGCGGC............................ 20 3 9 0.11 1 1 0 0 0 0 0
................................................................................................................................................................................................................GGGCAAGCGAGCGGCGATT........................ 19 3 10 0.10 1 1 0 0 0 0 0
.......AAATACCAAGAAGAATTAA................................................................................................................................................................................................................................. 19 2 10 0.10 1 0 0 1 0 0 0
...........................................................................................................................................................................................................ACAAGGGGTAAGCGAGCGG............................. 19 3 20 0.10 2 0 2 0 0 0 0
.................................................................................................................................................................................................................................TTGCGCTCTAGTTCACGAC....... 19 3 13 0.08 1 0 0 0 1 0 0
.....AGAAAACCCAAGACAAGTTAA................................................................................................................................................................................................................................. 21 3 17 0.06 1 0 0 1 0 0 0
..............................................................................................................................................................GGTGTTTGGTGGTGGGTTT.......................................................................... 19 2 18 0.06 1 1 0 0 0 0 0
.....AGGAAAAACAAGAAAAATTAA................................................................................................................................................................................................................................. 21 2 19 0.05 1 0 0 1 0 0 0
....TACCAAAACCAAGAAAAAT.................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................................TTTTGTTAGGATTTGTGTGG................................................................................. 20 3 20 0.05 1 0 0 0 0 0 1
..............................GACTATGGTTTTAACTAT........................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0
............................................................................................................................................................................................................CAAGGGGTAAGCGAGCG.............................. 17 2 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12943:4161559-4161809 + dan_955 CATTAT----------CT------TTTTGGTT-------------------------CT-TT-TTAATTT--TACCTCATACCAAA--------------------ATT-GAAAAA-----A--AA-AA------------------ATGTA-------------------------------------------TTAACCAAAAAC----CGAATTG-----AAAATTTTTACTAAACCAAAAATCATTTCTTTTTT---CGCGCATTTCTTTCGC----------------AAATTTCCCCCA-AAAAAACAAAAA------------------------------------------------------------------------------------------------------CAATC--CACA-AAA--CACCACCAAAAAAA-ATAT----------------A-----------------------------------------------------------------A--AAAA----------AATCAT-CGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
droBip1 scf7180000395973:385521-385811 + CATTTT----------CT------TTTTGGTTTAATTGTTT-A------TTTAACTCTC-TT-TTTATTTTATACCTCATACCGAA--------------------ATT-GAACAA-----A--A-----------------------AATTTAACTAAAATTTTAATAACC-AA-------------------------------C----CAAATTGA--TAAAAATTTTTACTAAACCA--ACGCATTTCTTTTTT---CGCGCATTTCTTTCGC----------------AAAAATCCCC-AAAAAAAACAAAAA-------------------------------------------------------------------------------T------------------------ATC--CACCAAAA--CACCACCAAAAAAACAATC----------------G-----------------------------T------TATCGAATGTTATCGAA-------------------------------TCAT-CGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
droKik1 scf7180000302401:538318-538575 - TTTTGT----CAT-----T-----T-CC-------------TA------TT-----ATT-AT-TTT------T-ACTCATAAACC-----------------CAA-AA--CA----A--CAA--CAAAA------------------TTATTGAA---------------CC-AAAAT---------TTGAAA--------------------------------TTTTTATACTAAACCA--ACGCATTTCTTTTCT---CGCGCATCTTT--CTCTCTCTCTCTCTGTGTGAAATCTCCCTCC-AAAATCCATGAATGTAAATCATCATCGACCACCGAATACGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAA------------TATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
droFic1 scf7180000453904:495824-496079 - CCCTTT----------CGT-----T-TT-------------TA------CG-----TTT-CT-TTTATTT--AACCTCATACCGAA--------------------A--C-----CA-----A--GAAA------------------TTGTTGAA---------------CC-AA-------------------------------C----CAAATTG-------AAT-TTTACTAAACCA--ACGCATTTCTCTTTT---CGCGCATCTCT----C----------------AAA--CC-CCCA-----------------------------------------------------------------------------------------------AC-----CACCAAC----CACGAAC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGAAACGAAACGAAACGATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
droEle1 scf7180000490454:142537-142792 + CTTAATT-------TTC--------TTTGGTT---------TA------TTTTAAATTG-AT-TTTATGT--AACCTCATACTAAA-----------------------C-----CG-----ATTGAAA------------------TTGTTGAA---------------TC-AA-------------------------------C----CAAATTG-------AATTTTTACTAAACCA--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAA--TCCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTAATCGAATGTATCCATCGACCGAAACGAAACAAAATGATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCCGATCAAGTGCCATCTTCAT
droRho1 scf7180000779252:258607-258848 - TAATTT--------TTC-------TTTTG-TTT-----T---T------TCTTACGTTA-TT-TTTATTT--AACCTCATATCAAA-----------------------C-----C---------GAAA------------------TTTTTGAA---------------GA-AA-------------------------------C----AAAATTG-------AATTTTTACTAAACCA--ACGCATTTCTATTTT---CGCGCATCTCT----C----------------AAA--TCCCCAA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGAAAC----------GATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
droBia1 scf7180000301547:28079-28310 + TATTAT--------------------TTGGTG------T----------TTTTACGTTC-CT-TTTATTT--TACCTCATACCGAA-----------------------------------------AA------------------TTGTTGAA---------------CC-AA-------------------------------C----AAAATTG-------AATTTATACTAAACCA--ACGCATTTCTTTTTT---CGCGCATTTCT----C----------------AAA--TCCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
droTak1 scf7180000413017:307083-307319 + CATTTT---------TC-------TTTTGGTG------T----------TTTTACGTTA-TT-TTTATTT--T-CCTCATACCGAA----------------------------------------AAA------------------TTGTTGAA---------------CC-AA-------------------------------CC---GAAATTG-------AATTTTTACTAAACCA--ACGCATTTCTTTTTT---CGCGCATTTCT----C----------------AAA--TCCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
droEug1 scf7180000409461:588007-588251 + CATTTT---------TCC------TTTCG-TTA---CGTTT-ACTTTTACTTTACAACG-TT-TTTATTT--AACCTCATACCGAA-----------------------------------------AA------------------TTGTTAAA---------------CC-GA-------------------------------C----AAAATTA-------AATTCTTACTAAACCA--ACGCATTTCTTTTTT---CGCGCATC--T----C----------------AAA--TC-CCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------AATTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
dm3 chr2L:229333-229554 - CATTT---------------------TTG-------------A------TT-----TTT-GT-TTTATTT--AACATCATACAAAA-----------------------------------------AA------------------TTGTTGAA---------------CC-GA-------------------------------G----AAAATTG-------AATTTTTACTAAAC-A--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAC--TTCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGAACGATAC----------GATCATATGTAGCGAACTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCTTCAT
droSim2 2l:215502-215731 - dsi_9980 TGGTATC--TCAT-----T-----T-TT-------------TA------TT-----TTT-GT-TTTATTT--AACATCATACAAAA-----------------------------------------AA------------------TTGTTGAA---------------CC-GA-------------------------------A----AAAATTG-------AATTTTTACTAAAC-A--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAC--TTCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAACTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCTTCAT
droSec2 scaffold_14:227323-227552 - TAGTATC--TCAT-----T-----T-TT-------------TA------TT-----TTT-GT-TTTATTT--AACATCATACAAAA-----------------------------------------AA------------------TTGTTGAA---------------CC-GA-------------------------------A----AAAATTG-------AATTTTTACTAAAC-A--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAC--TTCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAACTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCTTCAT
droYak3 2L:222307-222531 - CTC-AT----------TT------T-TT-------------TA------TT-----TTT-GT-TTTATTT--AACATCACACCAAA-----------------------------------------AA------------------TTGTTAAA---------------TC-GA-------------------------------A----AAAATTG-------AATTTTTACTAAAC-A--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAC--TCCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAACTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCTTCAT
droEre2 scaffold_4929:275494-275720 - TATTTT----------AT------T-TT-------------TA------TT-----TTT-GT-TTTATTT--AACATCATACCAAA-----------------------------------------AA------------------TTGTTGAA---------------CCCAA-------------------------------A----AAAATTG-------AATTTTTACTAAAC-A--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAC--TCCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAACTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCTTCAT
dp5 4_group1:4378632-4378913 + TATCATTTGTATTTATCT------TTTTGATTT--------TA------TT-----TTTCGTTTT----T-----ATCATACAAA-----------------CAAAA-----------------AA-AA------------------ATATTTAA---------------CA-AA-------------------------------A----ATAATTG-----AAAAATTTTACTAAAAAA--CCGCATTTCTTTTT-----GCGCATTTCT----C----------------AAA--TC------------------------------------------------------------------------------------------------TTACGCTCTCCTTCCCTCCACTGTCGTATCGTATC-AAACACAC------------ATTT----------------G--------------AATCGAAACGT----TT------ATCGAACGCAATCGAATGT--CTATCGAACGAATG----------AATC--ATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
droPer2 scaffold_5:831330-831624 - TATTTA---------TCT------TTTTGATTT--------TA------TT-----TTTCGT-TTTATTT-----ATCATACAAA-----------------CAAAA-----------------AA-AAAAAAACAAAAAAAAAAAATTATTTAA---------------CC-AAA------------------------------A----ATAATTG-----AACAATTTTACTAAAAAA--CCGCATTTCTTTTT-----GCGCATTTCT----C----------------AAA--TC------------------------------------------------------------------------------------------------TTACGCTCTCCTTCCCTCCACTGTCGTATCGTATC-AAACACAC------------ATTT----------------G--------------AGTCGAAACGT----TT------ATCGAAGGCAATCGAATGT-C-TATCGAACGAATG----------AATC--ATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAAATCAAGTGCCATCCTCAT
droWil2 scf2_1100000004577:114359-114577 - TGTTAT----------CA------TTTTG-------------A------TT-----TTT-AT-TTTA--A--AACATCATAATAAT-----------------------------------------AA------------------TATTATAA------------AAAGA-AAC------------------------------A----AAATTTG---------TATTTACTAAAA-A--ATGCATTTCAAATTTTATC--CCAA--------------------------------------------------------------TCGAAAAACAAAAAAAAAAACCAAACCCAAAATCATCCTCTATGCCCTACTACTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCATGTGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCATCAT
droVir3 scaffold_12963:8872701-8872994 + dvi_11020 TTTTAT----------TT------TTTTG--------------------TT-----GTT-CT-TTTAATT--TACTACAAAAAAA-------------------------CA----ATGCATA--AAAT------------------TTGTAAAA---------------AC-AA------------------------------AAACACAAAATTGTACTTAAAATTTTTACTAAAC-A--ACGCATTC------------------------------------------AAT--TC-------------------------------------------------------------------------TTATTCC-CCTTCATCTATATATATATCT-----CTCTCTC----A---ATA--TAC--------AC------------GTTTATATATATATATATATTTGCATATATATATATACAT------ATGTGTGTATATGTCGTATGT------GTGTGTATATCTATCGAAAC----------------ATGTAGCGAGCTACCCATACGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCAT
droMoj3 scaffold_6500:2457926-2458234 - CTAAAA-----------T------TTTTGAAAT--------TA------TT-----TTA-AT-TTTGTAT--AACTTTTTTCCAAATTTTATTTAATCATAACAAAA-----------------AA-A--------------------AATTG-------------------------------------ACATATTAAAAATAAAACGACA--TTTTAATTTAAAATTTATACTAAAC-A--ACTCATTTCTATTTC---CCCTCATCTCC----A----------------A----AT------------------------------------------------------------------------------------------------ATATGT-----ATATCTA----T---ATA--TA----------T------------ATATATATATATATAT-TATATATATAAATATATGTATATAAATATATACA------TATCGTATGT------GTGTGCATATCTATCGAATC----------------ATGCAGCGAGCTACCTATTCGGCCGCCACCAACGCCCGATCAAGTGCCATCGTCAT
droGri2 scaffold_15252:12916953-12917291 - CTTATA---------TGCTTTATAGTTTGATA----TATAT-ACATATTTTTTTCATTT-TA-TTTGTTT--GACAACAACCAAAA---------------------A--CA----ATGCATA--AAAC------------------TTGTTGAA---------------CT-GAATTTATTACTCATTGACA--------------------------------TATTTGTACTAAAC-A--A------------------------------------------------------------------------------------------------------GAAACCAAACAAAAACTCATGCAATTCTTCTTCCCCCCTCATCTTTATCTCTCTCT-----CTCTCTC----T---ATA--TC----------T------------CTTTATAAATATATATATATGTATATATATATATATATAT------ATCTATATCGAT---GTATGTGTGTG--TATATATATCTATCAAATC----------A---AAATGTAGCGAGCTCCCAATACGGCCGCCGCCAACGCCCGATCAGGTGCCATCATCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CATTAT----------CT------TTTTGGTT-------------------------CT-TT-TTAATTT--TACCTCATACCAAA--------------------ATT-GAAAAA-----A--AA-AA------------------ATGTA-------------------------------------------TTAACCAAAAAC----CGAATTG-----AAAATTTTTACTAAACCAAAAATCATTTCTTTTTT---CGCGCATTTCTTTCGC----------------AAATTTCCCCCA-AAAAAACAAAAA------------------------------------------------------------------------------------------------------CAATC--CACA-AAA--CACCACCAAAAAAA-ATAT----------------A-----------------------------------------------------------------A--AAAA----------AATCAT-CGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................AAA-----A--AA-AA------------------ATGTA-------------------------------------------TTAACCAAAAAC----CGA...................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
droBip1
CATTTT----------CT------TTTTGGTTTAATTGTTT-A------TTTAACTCTC-TT-TTTATTTTATACCTCATACCGAA--------------------ATT-GAACAA-----A--A-----------------------AATTTAACTAAAATTTTAATAACC-AA-------------------------------C----CAAATTGA--TAAAAATTTTTACTAAACCA--ACGCATTTCTTTTTT---CGCGCATTTCTTTCGC----------------AAAAATCCCC-AAAAAAAACAAAAA-------------------------------------------------------------------------------T------------------------ATC--CACCAAAA--CACCACCAAAAAAACAATC----------------G-----------------------------T------TATCGAATGTTATCGAA-------------------------------TCAT-CGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCATSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTGT----CAT-----T-----T-CC-------------TA------TT-----ATT-AT-TTT------T-ACTCATAAACC-----------------CAA-AA--CA----A--CAA--CAAAA------------------TTATTGAA---------------CC-AAAAT---------TTGAAA--------------------------------TTTTTATACTAAACCA--ACGCATTTCTTTTCT---CGCGCATCTTT--CTCTCTCTCTCTCTGTGTGAAATCTCCCTCC-AAAATCCATGAATGTAAATCATCATCGACCACCGAATACGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAA------------TATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCATSizeHit CountTotal NormTotal
No Reads
droFic1
CCCTTT----------CGT-----T-TT-------------TA------CG-----TTT-CT-TTTATTT--AACCTCATACCGAA--------------------A--C-----CA-----A--GAAA------------------TTGTTGAA---------------CC-AA-------------------------------C----CAAATTG-------AAT-TTTACTAAACCA--ACGCATTTCTCTTTT---CGCGCATCTCT----C----------------AAA--CC-CCCA-----------------------------------------------------------------------------------------------AC-----CACCAAC----CACGAAC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGAAACGAAACGAAACGATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCATSizeHit CountTotal NormTotal
No Reads
droEle1
CTTAATT-------TTC--------TTTGGTT---------TA------TTTTAAATTG-AT-TTTATGT--AACCTCATACTAAA-----------------------C-----CG-----ATTGAAA------------------TTGTTGAA---------------TC-AA-------------------------------C----CAAATTG-------AATTTTTACTAAACCA--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAA--TCCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTAATCGAATGTATCCATCGACCGAAACGAAACAAAATGATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCCGATCAAGTGCCATCTTCATSizeHit CountTotal NormTotal
No Reads
droRho1
TAATTT--------TTC-------TTTTG-TTT-----T---T------TCTTACGTTA-TT-TTTATTT--AACCTCATATCAAA-----------------------C-----C---------GAAA------------------TTTTTGAA---------------GA-AA-------------------------------C----AAAATTG-------AATTTTTACTAAACCA--ACGCATTTCTATTTT---CGCGCATCTCT----C----------------AAA--TCCCCAA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGAAAC----------GATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCATSizeHit CountTotal NormTotal
No Reads
droBia1
TATTAT--------------------TTGGTG------T----------TTTTACGTTC-CT-TTTATTT--TACCTCATACCGAA-----------------------------------------AA------------------TTGTTGAA---------------CC-AA-------------------------------C----AAAATTG-------AATTTATACTAAACCA--ACGCATTTCTTTTTT---CGCGCATTTCT----C----------------AAA--TCCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCATSizeHit CountTotal NormTotal
No Reads
droTak1
CATTTT---------TC-------TTTTGGTG------T----------TTTTACGTTA-TT-TTTATTT--T-CCTCATACCGAA----------------------------------------AAA------------------TTGTTGAA---------------CC-AA-------------------------------CC---GAAATTG-------AATTTTTACTAAACCA--ACGCATTTCTTTTTT---CGCGCATTTCT----C----------------AAA--TCCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCATSizeHit CountTotal NormTotal
No Reads
droEug1
CATTTT---------TCC------TTTCG-TTA---CGTTT-ACTTTTACTTTACAACG-TT-TTTATTT--AACCTCATACCGAA-----------------------------------------AA------------------TTGTTAAA---------------CC-GA-------------------------------C----AAAATTA-------AATTCTTACTAAACCA--ACGCATTTCTTTTTT---CGCGCATC--T----C----------------AAA--TC-CCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------AATTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCATSizeHit CountTotal NormTotal
No Reads
dm3
CATTT---------------------TTG-------------A------TT-----TTT-GT-TTTATTT--AACATCATACAAAA-----------------------------------------AA------------------TTGTTGAA---------------CC-GA-------------------------------G----AAAATTG-------AATTTTTACTAAAC-A--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAC--TTCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGAACGATAC----------GATCATATGTAGCGAACTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCTTCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACGCCAGATCAAGTGCCATC.....2519.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCAGATCAAGTGCCATCTTC..2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTCATCGAACGATAC----------GATCATA.......................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGAATGTACTCATCGAACGATAC----------GAT...........................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTACTCATCGAACGATAA----------..............................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCATCGAACGATAC----------GA............................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACGCCAGATCAAGTG..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGATAC----------GATCATATGTA...................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TACTAAAC-A--ACGCATTTCTTTTTT---CGC.................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ACAAAA-----------------------------------------AA------------------TTGTTGAA---------------CC-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TTTT---CGCGCATCTCT----C----------------AAC--TTC............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC----------GATCATATGTAGCGAACTCCCCAT......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAC----------GATCATATGTAGCGAACTCCCC........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACGCCAGATCAAGTGCCATCTTC..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TTCTTTTTT---CGCGCATCTCT----C----------------AAC--...............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTACTCATCGAACGATAC----------G.............................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCCCATTCGCCCGCCGCC..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCATCGAACGATAC----------GATCATATGT....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCCCGCCGCCAACGCC....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCATCGAACGATAC----------GATCAT........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGATCAAGTGCCATC.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGCCGCCAACGCCAGATCAAGTGCC........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................AATTTTTACTAAAC-A--ACGCATTTCTTT..........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCAACGCCAGATCAAGTGC.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAC----------GATCATATGTAGCGAACTCC..........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................G-------AATTTTTACTAAAC-A--ACGCATTTCTT...........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCAGATCAAGTGCCATCTTCAT2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATAC----------GATCATATGTAGCGAACTCC..........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTCGCCCGCCGCCAACGCCAGA.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGAATGTACTCATCGAACGA...........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATCGAATGTACTCAT..................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TACTAAAC-A--ACGCATTTCTTTTTT---CGCGCA..............................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGAATGTACTCATCGAACGATAC----------GA............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TTATTT--AACATCATACAAAA-----------------------------------------AA------------------TTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................T--AACATCATACAAAA-----------------------------------------AA------------------TTGTTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGCGAACTCCCCATTCGCCCGCCGC...........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACGCCAGATCAAGTGCC........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TGTTGAA---------------CC-GA-------------------------------G----AAAATTG-------AATTTT..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TTTTTACTAAAC-A--ACGCATTTCTTTTTT---....................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TACAAAA-----------------------------------------AA------------------TTGTTGAA---------------CC-GA-------------------------------G----AAAATT................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TTCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AC---------------------------.....................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCAGATCAAGTGCCA.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCGAACGATAC----------GATCATATGTAGC.................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGATCAAGTGCCATCTTC..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAC----------GATCATATGTAGCGAACTCCC.........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATAC----------GATCATATGTAG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGATAC----------GATCATATGTAGCGAACA............................................2711.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCG.............................................................................................2711.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGGTATC--TCAT-----T-----T-TT-------------TA------TT-----TTT-GT-TTTATTT--AACATCATACAAAA-----------------------------------------AA------------------TTGTTGAA---------------CC-GA-------------------------------A----AAAATTG-------AATTTTTACTAAAC-A--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAC--TTCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAACTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCTTCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................TACAAAA-----------------------------------------AA------------------TTGTTGAA---------------CC-GA-------------------------------A----AAA...................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
............................................................................................................................................................................................................................................AAC-A--ACGCATTTCTTTTTT---CGCG................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
droSec2
TAGTATC--TCAT-----T-----T-TT-------------TA------TT-----TTT-GT-TTTATTT--AACATCATACAAAA-----------------------------------------AA------------------TTGTTGAA---------------CC-GA-------------------------------A----AAAATTG-------AATTTTTACTAAAC-A--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAC--TTCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAACTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCTTCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCCAGATCAAGTGCCA.......2011.0010001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGATCAAGTGCCATCTTCA.2411.0010100
droYak3
CTC-AT----------TT------T-TT-------------TA------TT-----TTT-GT-TTTATTT--AACATCACACCAAA-----------------------------------------AA------------------TTGTTAAA---------------TC-GA-------------------------------A----AAAATTG-------AATTTTTACTAAAC-A--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAC--TCCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAACTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCTTCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TATTTT----------AT------T-TT-------------TA------TT-----TTT-GT-TTTATTT--AACATCATACCAAA-----------------------------------------AA------------------TTGTTGAA---------------CCCAA-------------------------------A----AAAATTG-------AATTTTTACTAAAC-A--ACGCATTTCTTTTTT---CGCGCATCTCT----C----------------AAC--TCCCCCA---------------------------------------------------------------------------------------------------------------------ATC--CACC-AAA--CAC------------ATTT----------------G--------------AA---------------------------TGTTATCGAATGTACTCATCGACCGATAC----------GATCATATGTAGCGAACTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCTTCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAC----------GATCATATGTAGCGAACTCCCC........................................2711.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATTCGCCCGCCGCCAACGCCAGATC...............2811.0010000001
dp5
TATCATTTGTATTTATCT------TTTTGATTT--------TA------TT-----TTTCGTTTT----T-----ATCATACAAA-----------------CAAAA-----------------AA-AA------------------ATATTTAA---------------CA-AA-------------------------------A----ATAATTG-----AAAAATTTTACTAAAAAA--CCGCATTTCTTTTT-----GCGCATTTCT----C----------------AAA--TC------------------------------------------------------------------------------------------------TTACGCTCTCCTTCCCTCCACTGTCGTATCGTATC-AAACACAC------------ATTT----------------G--------------AATCGAAACGT----TT------ATCGAACGCAATCGAATGT--CTATCGAACGAATG----------AATC--ATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................CTAAAAAA--CCGCATTTCTTTTT-----G..................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
droPer2
TATTTA---------TCT------TTTTGATTT--------TA------TT-----TTTCGT-TTTATTT-----ATCATACAAA-----------------CAAAA-----------------AA-AAAAAAACAAAAAAAAAAAATTATTTAA---------------CC-AAA------------------------------A----ATAATTG-----AACAATTTTACTAAAAAA--CCGCATTTCTTTTT-----GCGCATTTCT----C----------------AAA--TC------------------------------------------------------------------------------------------------TTACGCTCTCCTTCCCTCCACTGTCGTATCGTATC-AAACACAC------------ATTT----------------G--------------AGTCGAAACGT----TT------ATCGAAGGCAATCGAATGT-C-TATCGAACGAATG----------AATC--ATGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAAATCAAGTGCCATCCTCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAATG----------AATC--ATGTAGA.................................................2011.001100000
droWil2
TGTTAT----------CA------TTTTG-------------A------TT-----TTT-AT-TTTA--A--AACATCATAATAAT-----------------------------------------AA------------------TATTATAA------------AAAGA-AAC------------------------------A----AAATTTG---------TATTTACTAAAA-A--ATGCATTTCAAATTTTATC--CCAA--------------------------------------------------------------TCGAAAAACAAAAAAAAAAACCAAACCCAAAATCATCCTCTATGCCCTACTACTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCATGTGTAGCGAGCTCCCCATTCGCCCGCCGCCAACGCCAGATCAAGTGCCATCATCATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACGCCAGATCAAGTGCC........2211.00100001
droVir3
TTTTAT----------TT------TTTTG--------------------TT-----GTT-CT-TTTAATT--TACTACAAAAAAA-------------------------CA----ATGCATA--AAAT------------------TTGTAAAA---------------AC-AA------------------------------AAACACAAAATTGTACTTAAAATTTTTACTAAAC-A--ACGCATTC------------------------------------------AAT--TC-------------------------------------------------------------------------TTATTCC-CCTTCATCTATATATATATCT-----CTCTCTC----A---ATA--TAC--------AC------------GTTTATATATATATATATATTTGCATATATATATATACAT------ATGTGTGTATATGTCGTATGT------GTGTGTATATCTATCGAAAC----------------ATGTAGCGAGCTACCCATACGCCCGCCGCCAACGCCAGATCAAGTGCCATCCTCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCCGCCGCCAACGCCAGAT................2212.002000000000000000000000000000000000000000000000000000000000000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------ATGTAGCGAGCTACCCATACGCCC................................2711.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAC----------------ATGTAGCGAGCTA...........................................2111.001000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GTGTGTATATCTATCGAAAC----------------ATG.....................................................2411.001000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACGCCAGATCAAGTGCC........2211.001000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TATATATATCT-----CTCTCTC----A---...................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATATACAT------ATGTGTG................................................................................................................2380.131001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTAAAA-----------T------TTTTGAAAT--------TA------TT-----TTA-AT-TTTGTAT--AACTTTTTTCCAAATTTTATTTAATCATAACAAAA-----------------AA-A--------------------AATTG-------------------------------------ACATATTAAAAATAAAACGACA--TTTTAATTTAAAATTTATACTAAAC-A--ACTCATTTCTATTTC---CCCTCATCTCC----A----------------A----AT------------------------------------------------------------------------------------------------ATATGT-----ATATCTA----T---ATA--TA----------T------------ATATATATATATATAT-TATATATATAAATATATGTATATAAATATATACA------TATCGTATGT------GTGTGCATATCTATCGAATC----------------ATGCAGCGAGCTACCTATTCGGCCGCCACCAACGCCCGATCAAGTGCCATCGTCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CTTATA---------TGCTTTATAGTTTGATA----TATAT-ACATATTTTTTTCATTT-TA-TTTGTTT--GACAACAACCAAAA---------------------A--CA----ATGCATA--AAAC------------------TTGTTGAA---------------CT-GAATTTATTACTCATTGACA--------------------------------TATTTGTACTAAAC-A--A------------------------------------------------------------------------------------------------------GAAACCAAACAAAAACTCATGCAATTCTTCTTCCCCCCTCATCTTTATCTCTCTCT-----CTCTCTC----T---ATA--TC----------T------------CTTTATAAATATATATATATGTATATATATATATATATAT------ATCTATATCGAT---GTATGTGTGTG--TATATATATCTATCAAATC----------A---AAATGTAGCGAGCTCCCAATACGGCCGCCGCCAACGCCCGATCAGGTGCCATCATCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:41 PM