ID:

dan_925

 Coordinate:

scaffold_12943:1983531-1983681 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.2 -16.2 -16.1

Flybase annnotation

exon [dana_GLEANR_548:3]; CDS [Dana\GF21674-cds]; intron [Dana\GF21674-in]

No Repeatable elements found

mature
star
  1. scaffold_6730:388-414 +
  2. scaffold_7331:3562-3588 +
  3. scaffold_11638:2129-2155 +
  4. scaffold_12911:367424-367450 +
  5. scaffold_12916:4964753-4964779 -
  6. dan_925  scaffold_12943:1983537-1983563 -
  7. scaffold_12947:474324-474350 +
  8. scaffold_13077:335517-335543 +
  9. scaffold_13086:82487-82513 +
  10. scaffold_13099:2941358-2941384 +
  11. scaffold_13099:3165720-3165746 +
  12. scaffold_13137:1292753-1292779 -
  13. scaffold_13228:263943-263969 -
  14. scaffold_13250:1403140-1403166 +
  15. scaffold_13333:211712-211738 +
  16. scaffold_13339:2927916-2927942 -
  17. scaffold_13417:5875996-5876022 -
  18. scaffold_13456:2120-2146 +
  19. scaffold_13469:143320-143346 +
  20. scaffold_13767:370456-370482 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GATTAAGTAATTTCGCCTCTTCTTATCATCAAGCATTCCAAATTAATGTTCACAGAATCTCTTACTGCAACCGACTCTTTGTACCAGACGCCCAATCTGGGAGAAAATTTTTAGTCGATACAGGAGCCGACGTTTCGATCATTCCATACAGTACTATTCACAAGAATATACAAAACGCCAATCGCCATACACTCTTTGCAGCGAACGGCACAGAAATAAAAACATACGGCACCATCCGCTTGACACTGGAC
**********************************************************.......(((((........)))))(((((.......)))))(((..........(((((.((..........)).)))))...........(((.(((((....)))))))).....((.....))......))).******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
..........................................................CTCTTACTGCAACCGACTCTTTGTA........................................................................................................................................................................ 25 0 1 1.00 1 1 0
.................................................TCACAGAATCTCTTACTGCAACCGAC................................................................................................................................................................................ 26 0 2 1.00 2 2 0
.................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCACC.................. 24 0 18 0.67 12 0 12
................................................TTCACAGAATCTCTTACTGCAACCGACT............................................................................................................................................................................... 28 0 2 0.50 1 0 1
.........................TCATCAAGCATTCCAAATTAATGTT......................................................................................................................................................................................................... 25 0 2 0.50 1 0 1
...............................................GTTCACAGAATCTCTTACTGCAACC................................................................................................................................................................................... 25 0 2 0.50 1 1 0
.....................CTTATCATCAAGCATTCCAAATTAATGTT......................................................................................................................................................................................................... 29 0 2 0.50 1 0 1
..............................................TGTTCACAGAATCTCTTACTGCAACCG.................................................................................................................................................................................. 27 0 2 0.50 1 1 0
..............................................TGTTCACAGAATCTCTTACTGCAACCGAC................................................................................................................................................................................ 29 0 2 0.50 1 1 0
...............................................GTTCACAGAATCTCTTACTGCAACCGA................................................................................................................................................................................. 27 0 2 0.50 1 1 0
.................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCACCA................. 25 0 18 0.39 7 1 6
................................................................................................................................................................................................................CACAGAAATAAAAACATACGGCACC.................. 25 0 17 0.24 4 1 3
........................................................................................................................................................................TACAAAACGCCAATCGCCATACACTCT........................................................ 27 0 20 0.15 3 3 0
...............................................................................................................................................................................CGCCAATCGCCATACACTCTTTGCAGC................................................. 27 0 20 0.15 3 2 1
........................................................................................................................................................................TACAAAACGCCAATCGCCATACACTCTT....................................................... 28 0 20 0.15 3 1 2
...............................................................................................................................................CCATACAGTACTATTCACAAGAATA................................................................................... 25 0 16 0.13 2 2 0
..............................................................................TTGTACCAGACGCCCAATCTG........................................................................................................................................................ 21 0 9 0.11 1 1 0
.................................................................................................................................................................................................................ACAGAAATAAAACCATACGGCACC.................. 24 1 18 0.11 2 0 2
...........................................................................................................................................................................................TACACTCTTTGCAGCGAACGGCACAGA..................................... 27 0 20 0.10 2 2 0
...................................................................................................................................................................GAATATACAAAACGCCAATCGCCATA.............................................................. 26 0 20 0.10 2 1 1
.................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCACCATCC.............. 28 0 15 0.07 1 0 1
........................................................................................................................................GATCATTCCATACAGTACTATTCAC.......................................................................................... 25 0 16 0.06 1 1 0
........................................................................................................................................GATCATTCCATACAGTACTATTCACA......................................................................................... 26 0 16 0.06 1 0 1
............................................................................................................................................ATTCCATACAGTACTATTCACAA........................................................................................ 23 0 16 0.06 1 0 1
...................................................................................................................................GTTTCGATCATTCCATACAGTACTAT.............................................................................................. 26 0 16 0.06 1 1 0
............................................................................................................................................ATTCCATAAAGTACTATTCACAAGAATA................................................................................... 28 1 16 0.06 1 1 0
........................................................................................................................................GATCATTCCATACAGTACTATTC............................................................................................ 23 0 16 0.06 1 1 0
..................................................................................................................................................................................................................CAGAAATAAAAACATACGGCACCATC............... 26 0 16 0.06 1 0 1
...................................................................................................................................GTTTCGATCATTCCATACAGTACTA............................................................................................... 25 0 16 0.06 1 0 1
............................................................................................................................................................................................................................AACATACGGCACCATCCGCTTGACAC..... 26 0 17 0.06 1 0 1
............................................................................................................................................................................................................ACGGCACAGAAATAAAAACATACGGCAC................... 28 0 17 0.06 1 0 1
.................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCACCAT................ 26 0 17 0.06 1 0 1
..............................................................................................................................................................................................................GTCACAGAAATAAAAACATACGGCAC................... 26 1 18 0.06 1 0 1
................................................................................................................................................................................................................TACAGAAATAAAAACATACGGCACC.................. 25 1 18 0.06 1 0 1
.................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCACT.................. 24 1 18 0.06 1 0 1
.................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCAC................... 23 0 18 0.06 1 0 1
................................................................................................................................................................................................................CGCAGAAATAAAAACATACGGCACC.................. 25 1 18 0.06 1 0 1
..................................................................................................................................................................................................................CAGAAATAAAAACATACGGCACC.................. 23 0 18 0.06 1 0 1
..TTAAGTAATTTCGCCTCTTCTTATCATC............................................................................................................................................................................................................................. 28 0 19 0.05 1 0 1
.................................................................................................................................................................................................................AGAGAAATAAAAACATACGGCACC.................. 24 1 19 0.05 1 0 1
................................................................................................................................................................................................................CAAAGAAATAAAAACATACGGCACCA................. 26 1 19 0.05 1 0 1
................................................................................................................................................................................................................CACAGAAATAAAAACATACGGCA.................... 23 0 19 0.05 1 0 1
......................................................................................................................................................................TATACAAAACGCCAATCGCCATACACTCT........................................................ 29 0 20 0.05 1 1 0
.........................................................................................................................................................CTATTCACAAGAATATACAAAACGCC........................................................................ 26 0 20 0.05 1 0 1
...................................................................................................................CGATACAGGAGCCGACGTTTC................................................................................................................... 21 0 20 0.05 1 1 0
...................................................................................................................CGATACAGGAGCCGACGTTTCG.................................................................................................................. 22 0 20 0.05 1 1 0
.........................................................................................................................................................................................................................AAAAACAAACGGCACCACC............... 19 2 20 0.05 1 0 1
.............................................................................................................................................................................AACGCCAATCGCCATACACTCTTTGC.................................................... 26 0 20 0.05 1 0 1
...........................................................................................................................................................................................TACACTCTTTGCAGCGAACGGCACA....................................... 25 0 20 0.05 1 0 1
............................................................................................................................................................................................ACACTCTTTGCAGCGAACGGCACAG...................................... 25 0 20 0.05 1 1 0
..........................................................................................................................................................................CAAAACGCCAATCGCCATACACTCTTTG..................................................... 28 0 20 0.05 1 1 0
.....................................................................................................................................................................................TCGCCATACACTCTTTGCAGCGAACG............................................ 26 0 20 0.05 1 1 0
......................................................................................................................................................................TATACAAAACGCCAATCGCCATACACT.......................................................... 27 0 20 0.05 1 1 0
....................................................................................................................................................................AATATACAAAACGCCAATCGCCATACACT.......................................................... 29 0 20 0.05 1 1 0
......................................................................................................................................................................TATACAAAACGCCAATCGCCATACACC.......................................................... 27 1 20 0.05 1 0 1
......................................................................................................................................................................................................................AATAAAAACATACGGCACCATCCGCT........... 26 0 20 0.05 1 0 1
.........................................................................................................................................................................................................................AAAAACATACGGCACCAT................ 18 0 20 0.05 1 0 1
......................................................................................................................TACAGGAGGCGACGTTTCGATCATT............................................................................................................ 25 1 20 0.05 1 1 0
................................................................................................................AGTCGATACAGGAGCCGACGTTTCGATC............................................................................................................... 28 0 20 0.05 1 1 0
...........................................................................................................................................................................................TACACTCTTTGCAGCGAACGGTA......................................... 23 1 20 0.05 1 1 0
.........................................................................................................................................................................................................................AAAAACAGACGGCACCACC............... 19 2 20 0.05 1 0 1
..................................................................................................................................................................................CAATCGCCATACACTCTTTGCAG.................................................. 23 0 20 0.05 1 1 0
........................................................................................................................................................................TACAAAACGCCAATCGCCATACACTC......................................................... 26 0 20 0.05 1 1 0
.............................................................................................................................GCCGACGTTTCGATCATTCCATACA..................................................................................................... 25 0 20 0.05 1 1 0
......................................................................................................................................................................................................................AATAAAAACATACGGCACCATCCGCTT.......... 27 0 20 0.05 1 1 0
......................................................................................................................TACAGGAGCCGACGTTTCGATCATTCC.......................................................................................................... 27 0 20 0.05 1 0 1
...............................................................................................................................................................................................CTCTTTGCAGCGAACGGCACAGA..................................... 23 0 20 0.05 1 1 0

Anti-sense strand reads

CTAATTCATTAAAGCGGAGAAGAATAGTAGTTCGTAAGGTTTAATTACAAGTGTCTTAGAGAATGACGTTGGCTGAGAAACATGGTCTGCGGGTTAGACCCTCTTTTAAAAATCAGCTATGTCCTCGGCTGCAAAGCTAGTAAGGTATGTCATGATAAGTGTTCTTATATGTTTTGCGGTTAGCGGTATGTGAGAAACGTCGCTTGCCGTGTCTTTATTTTTGTATGCCGTGGTAGGCGAACTGTGACCTG
********************************************************.......(((((........)))))(((((.......)))))(((..........(((((.((..........)).)))))...........(((.(((((....)))))))).....((.....))......))).********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V039
embryo
 V055
head
 V106
head
.............................................................................................................................CGGCTGCAAAGCTAGTAAGGTATGT..................................................................................................... 25 0 20 4.10 82 59 15 5 3 0 0
...............GGAGAAGAATAGTAGTTCGTAAGGT................................................................................................................................................................................................................... 25 0 3 1.00 3 1 0 2 0 0 0
..............................................................................................................................GGCTGCAAAGCTAGTAAGGTATGT..................................................................................................... 24 0 20 0.75 15 11 2 1 1 0 0
..............CGGAGAAGAATAGTAGTTCGTAAGGT................................................................................................................................................................................................................... 26 0 3 0.67 2 1 0 1 0 0 0
................................CGTAAGGTTTAATTACAAGTGTCTT.................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0
........................................TTAATTACAAGTGTCTTAGAGAATGACG....................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................CTCGGCTGCAAAGCTAGTAAGGT......................................................................................................... 23 0 20 0.50 10 6 3 0 1 0 0
.............................................................................................................................CGGCTGCAAAGCTAGTAAGGTATG...................................................................................................... 24 0 20 0.45 9 8 1 0 0 0 0
....................................................................................................................................................................................................................................CGTGGTAGGCGAACTGTGACCT. 22 0 18 0.39 7 0 7 0 0 0 0
...............................................................................................AGACCCTCTTTTCAAAATCAGCTATGT................................................................................................................................. 27 1 8 0.38 3 3 0 0 0 0 0
.............................................................................................................................CGGCTGCAAAGCTAGTAAGGTATTT..................................................................................................... 25 1 20 0.35 7 0 7 0 0 0 0
..................................................................................................................................................................................................AAACGTCGCTTGCCGTGTCTTTATT................................ 25 0 20 0.35 7 5 1 0 0 0 1
.............................................................................................................................CGGCTGCAAAGCTAGTAAGGTATGTCAT.................................................................................................. 28 0 20 0.35 7 7 0 0 0 0 0
..........................................................................................................................CCTCGGCTGCAAAGCTAGTAAGGT......................................................................................................... 24 0 20 0.35 7 1 6 0 0 0 0
...................................................................................................................................................................................................................................CCGTGGTAGGCGAACTGTGACCT. 23 0 18 0.33 6 0 6 0 0 0 0
...............GGAGAAGAATAGTAGTTCGTAAG..................................................................................................................................................................................................................... 23 0 3 0.33 1 0 0 1 0 0 0
................GAGAAGAATAGTAGTTCGTAAGGT................................................................................................................................................................................................................... 24 0 3 0.33 1 0 0 1 0 0 0
......................................................................................CTGCGGGTTAGACCCTCTTTTAAAAAT.......................................................................................................................................... 27 0 6 0.33 2 0 2 0 0 0 0
......................................................................................CTGCGGGTTAGACCCTCTTTTCAAAAT.......................................................................................................................................... 27 1 6 0.33 2 0 1 1 0 0 0
.................................................................................................................................................................................................GAAACGTCGCTTGCCGTGTCTTTATT................................ 26 0 20 0.30 6 6 0 0 0 0 0
..........................................................................................................................CCTCGGCTGCAAAGCTAGTAAGGTATGT..................................................................................................... 28 0 19 0.26 5 4 1 0 0 0 0
....................................................................................................................CTATGTCCTCGGCTGCAAAGCTAGT.............................................................................................................. 25 0 20 0.25 5 3 2 0 0 0 0
................................................................................................GACCCTCTTTTAAAAATCAGCTATGT................................................................................................................................. 26 0 8 0.25 2 2 0 0 0 0 0
......CATTAAAGCGGAGAAGAATAGTAGT............................................................................................................................................................................................................................ 25 0 20 0.20 4 1 1 0 2 0 0
.....................................................................................................................................................................................................CGTCGCTTGCCGTGTCTTTATT................................ 22 0 20 0.20 4 3 1 0 0 0 0
...................................................................................................................GCTATGTCCTCGGCTGCAAAGCTAGT.............................................................................................................. 26 0 20 0.20 4 3 1 0 0 0 0
..................................................................................................................AGCTATGTCCTCGGCTGCAAAGCTAGT.............................................................................................................. 27 0 20 0.20 4 4 0 0 0 0 0
.................................................................................................................................................................................................................................TGCCGTGGTAGGCGAACTGTGACCT. 25 0 17 0.18 3 2 1 0 0 0 0
......................................................................................CTGCGGGTTAGACCCTCTTTTCATAAT.......................................................................................................................................... 27 2 6 0.17 1 0 1 0 0 0 0
.....................................................................................TCTGCGGGTTAGACCCTCTTTTAAAAAT.......................................................................................................................................... 28 0 6 0.17 1 0 1 0 0 0 0
...........................................................................................................................CTCGGCTGCAAAGCTAGTAAGGTATGT..................................................................................................... 27 0 19 0.16 3 3 0 0 0 0 0
.........TAAAGCGGAGAAGAATAGTAGTTCGT........................................................................................................................................................................................................................ 26 0 20 0.15 3 3 0 0 0 0 0
.................................................................................................................................................................................................GAAACGTCGCTTGCCGTGTCTTTAT................................. 25 0 20 0.15 3 3 0 0 0 0 0
...........................................................................................................................CTCGGCTGCAAAGCTAGTAAGGTAT....................................................................................................... 25 0 20 0.15 3 1 2 0 0 0 0
.................................................................................................................CAGCTATGTCCTCGGCTGCAAAGCTAGT.............................................................................................................. 28 0 20 0.15 3 3 0 0 0 0 0
...................................................................................................................................................................................................AACGTCGCTTGCCGTGTCTTTATT................................ 24 0 20 0.15 3 2 1 0 0 0 0
......CATTAAAGCGGAGAAGAATAGTAGTT........................................................................................................................................................................................................................... 26 0 20 0.15 3 0 1 1 1 0 0
...............................................................................................................................GCTGCAAAGCTAGTAAGGTATGT..................................................................................................... 23 0 20 0.15 3 3 0 0 0 0 0
......................................................................................................................................................................ATATGTTTTGCGGTTAGCGGTATGT............................................................ 25 0 20 0.15 3 3 0 0 0 0 0
..........................................................................................................................CCTCGGCTGCAAAGCTAGTAAGGTAT....................................................................................................... 26 0 20 0.15 3 2 1 0 0 0 0
...................................................................................................................................................................CTTATATGTTTTGCGGTTAGCGGTAT.............................................................. 26 0 20 0.15 3 2 1 0 0 0 0
..........................................................................................................................CCTCGGCTGCAAAGCTAGTAAGTT......................................................................................................... 24 1 20 0.15 3 0 3 0 0 0 0
..................................................................................................................................GCAAAGCTAGTAAGGTATGTCATGAT............................................................................................... 26 0 16 0.13 2 2 0 0 0 0 0
.................................................................................................ACCCTCTTTTAAAAATCAGCTATGTCCT.............................................................................................................................. 28 0 8 0.13 1 1 0 0 0 0 0
...............................................................................................AGACCCTCTTTTCAAAATCAGCTAT................................................................................................................................... 25 1 8 0.13 1 1 0 0 0 0 0
...............................................................................................AGACCCTCTTTTAAAAATCAGCTAT................................................................................................................................... 25 0 8 0.13 1 1 0 0 0 0 0
....................................................................................................................................AAAGCTAGTAAGGTATGTCATGATAAG............................................................................................ 27 0 16 0.13 2 0 0 2 0 0 0
...................................................................................................CCTCTTTTCAAAATCAGCTATGTCCT.............................................................................................................................. 26 1 8 0.13 1 1 0 0 0 0 0
............................................................................................GTTAGACCCTCTTTTAAAGATCAGCTA.................................................................................................................................... 27 1 8 0.13 1 1 0 0 0 0 0
...................................................................................................CCTCTTTTAAAAATCAGCTAGGTCCT.............................................................................................................................. 26 1 8 0.13 1 0 1 0 0 0 0
................................................................................................................................................................................................................................ATGCCGTGGTAGGCGAACTGTGACCT. 26 0 17 0.12 2 1 1 0 0 0 0
................................................................................................................................................................................................................................ATGCCGTGGTAGGCGAACTGTGACCTG 27 0 17 0.12 2 1 1 0 0 0 0
....................................................................................................................................................................................................................................CGTGGTAGGCGAACTGTGACCTG 23 0 18 0.11 2 0 2 0 0 0 0
.....................................................................................................................TATGTCCTCGGCTGCAAAGCTAGT.............................................................................................................. 24 0 20 0.10 2 1 1 0 0 0 0
....................................................................................................................CTATGTCCTCGGCTGCAAAGCTAGTAAG........................................................................................................... 28 0 20 0.10 2 2 0 0 0 0 0
............................................................................................................................TCGGCTGCAAAGCTAGTAAGGTATGT..................................................................................................... 26 0 20 0.10 2 1 1 0 0 0 0
.....TCATTAAAGCGGAGAAGAATAGTAGTT........................................................................................................................................................................................................................... 27 0 20 0.10 2 1 1 0 0 0 0
........................................................................................................................................................................................................CGCTTGCCGTGTCTTTATTTTTGTAT......................... 26 0 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................CGGCTGCAAAGCTAGTAAGGTATGTC.................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
......................................................................................................................................................................................................GTCGCTTGCCGTGTCTTTATTTTTGTAT......................... 28 0 20 0.10 2 2 0 0 0 0 0
.....................................................................................................................................................................TATATGTTTTGCGGTTAGCGGTATGT............................................................ 26 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................................................................................................AGAAACGTCGCTTGCCGTGTCTTTAT................................. 26 0 20 0.10 2 1 1 0 0 0 0
......................................................................................................................................................................................................................................TGGTAGGCGAACTGTGACCT. 20 0 20 0.10 2 1 1 0 0 0 0
...........................................................................................................................CTCGGCTGCAAAGCTAGTAAGGTATG...................................................................................................... 26 0 20 0.10 2 1 1 0 0 0 0
....................................................................................................................................................................TTATATGTTTTGCGGTTAGCGGTATGT............................................................ 27 0 20 0.10 2 1 1 0 0 0 0
....TTCATTAAAGCGGAGAAGAATAGTAG............................................................................................................................................................................................................................. 26 0 20 0.10 2 0 0 2 0 0 0
............................................................................................................................TCGGCTGCAAAGCTAGTAAGGT......................................................................................................... 22 0 20 0.10 2 0 2 0 0 0 0
........................................................................................................................................................................................................CGCTTGCCGTGTCTTTATTTTTGT........................... 24 0 20 0.10 2 2 0 0 0 0 0
........................................................................................................................GTCCTCGGCTGCAAAGCTAGTAAGGT......................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................CGGCTGCAAAGCTAGTAAGGTATGTCA................................................................................................... 27 0 20 0.10 2 1 1 0 0 0 0
....................................................................................................................................................................................................ACGTCGCTTGCCGTGTCTTTATTTTTGT........................... 28 0 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................................................................................ACGTCGCTTGCCGTGTCTTTATTTTT............................. 26 0 20 0.10 2 1 0 0 1 0 0
............................................................................................................................TCGGCTGCAAAGCTAGTAAGGTAT....................................................................................................... 24 0 20 0.10 2 0 1 0 1 0 0
.............................................................................................................................CGGCTGCAAAGCTAGTGAGGTATGT..................................................................................................... 25 1 20 0.10 2 1 0 0 1 0 0
...................................................................................................................................CAAAGCTAGTAAGGTATGTCATGAT............................................................................................... 25 0 16 0.06 1 0 0 0 0 1 0
..........................................................................................................................................AGTAAGGTATGTCATGATAAGTGTT........................................................................................ 25 0 16 0.06 1 0 1 0 0 0 0
........................................................................................................................................CTAGTAAGGTATGTCATGATAAGTGTT........................................................................................ 27 0 16 0.06 1 1 0 0 0 0 0
.............................................................................................................................................AAGGTATGTCATGATAAGTGTTCTT..................................................................................... 25 0 16 0.06 1 0 1 0 0 0 0
....................................................................................................................................AAAGCTAGTAAGGTATGTCATGATAA............................................................................................. 26 0 16 0.06 1 0 0 1 0 0 0
................................................................................................................................................................................................................................ATGCCGTGGTAGGCGAACTGTGACC.. 25 0 17 0.06 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................TGTATGCCGTGGTAGGCGAACTGTGAC... 27 0 17 0.06 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................TATGCCGTGGTAGGCGAACTGTGACCT. 27 0 17 0.06 1 0 1 0 0 0 0
................................................................................................................................................................................................................................ATGCCGTGGTAGGCGAACTGTGAC... 24 0 18 0.06 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................CCGTGGTAGGCGAACTGTGACCTG 24 0 18 0.06 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................CGTGGTAGGCGAACTGTGACCGG 23 1 18 0.06 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................TATGCCGTGGTAGGCGAACTGTGAC... 25 0 18 0.06 1 0 1 0 0 0 0
...........................................................................................................................................................................................................TTGCCGTGTCTTTATTTTTGTATGCCGT.................... 28 0 19 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................CCGTGGTAGGCGAACTGTGAC... 21 0 19 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................................................CGTCGCTTGCCGTGTCTTTATTTTTTT........................... 27 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................................................CGTCGCTTGCCGTGTCTTTATTTTTGT........................... 27 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................GTTTTGCGGTTAGCGGTATGT............................................................ 21 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................TGTCCTCGGCTGCAAAGCTAGTAAA........................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................................CGTCGCTTGCCGTGTCTTTATTTTTGTA.......................... 28 0 20 0.05 1 1 0 0 0 0 0
......CATTAAAGCGGAGAAGAATAGTAGTTC.......................................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................GGCTGCAAAGCTAGTGAGGTATGT..................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................GCTAGTAAGTAGTGTCATG................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1
......CATTAAAGCGGAGAAGAATAGTAG............................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................CTCGGCTGCAAAGCTAGTAAGGCATGC..................................................................................................... 27 2 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................................................GTCGCTTGCCGTGTCTTTATTTTTGT........................... 26 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................CTCGGCTGCAAAGCTAGTAAGTT......................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
............................................................................................................................TCGGCTGCAAAGCTAGTAAGGTATG...................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
....TTCATTAAAGCGGATAAGAATAGTAG............................................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................CGGCTGCAAAGCTAGTAAGGTAT....................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................................ACGTCGCTTGCCGTGTCTTTATT................................ 23 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................AGGTATGTAACGATGAGTGTT........................................................................................ 21 3 20 0.05 1 0 0 0 0 1 0
...ATTCATTAAAGCGGAGAAGAATAGTAGT............................................................................................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................GCTATGTCCTCGGCTGCAAAGCTAG............................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................TTACGGCTGCAAAGCTAGTAAGGTATGT..................................................................................................... 28 3 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................CTGATATGTTTTGCGGTTAGCGGT................................................................ 24 1 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................................GGTATGTGAGAAACGTCGCTTGCCG.......................................... 25 0 20 0.05 1 0 0 0 1 0 0
.....................................................................................................................TATGTCCTCGGCTGCAAAGCTAGTAA............................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................................................................CTAACCGTGTCGTTATTTTTG............................ 21 3 20 0.05 1 0 0 0 1 0 0
................................................................................................................................................................................................AGAAACGCCGCTTGCCGTGTCTTTATT................................ 27 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................CGGCTGCAAAGCTAGTAAGATATGTCAT.................................................................................................. 28 1 20 0.05 1 1 0 0 0 0 0
...............GGAGAAGAATAGTAGTTCGT........................................................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................GGTTAGCGGTATGTGAGAAACGTCGCT............................................... 27 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................................ACGTCGCTTGCCGTGTCTTTATTTTTG............................ 27 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................CCAGCTATGTCCTCGGCTGCAAATCT................................................................................................................. 26 2 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................................AGCGGTATGTGAGAAACGTTGCT............................................... 23 1 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................................................................GTGTCGCTTGCCGTGTCTTTATT................................ 23 2 20 0.05 1 1 0 0 0 0 0
.............GCGGAGAAGAATGGTCGT............................................................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 1 0
.........................................................................................................................TCCTCGGCTGCAAAGCGAGTAAGGT......................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................CTATGTCCTCGGCTGCAAAGCTA................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0
..................................................GTGTCTTAAAGAATGACGTTGGCTGAG.............................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................TGTGAGAAACGTCGCTTGCCGTGT....................................... 24 0 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................GGCTGCAAAGCTAGTAAGGTATGTCAT.................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................AACGTCGCTTGCCGTGTCTTTAT................................. 23 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................TCGCTTGCCGTGTCTTTATTTTTTT........................... 25 1 20 0.05 1 0 1 0 0 0 0
............................................................................................................................TCGGCTGCAAAGCTAGTAAGGTACGT..................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................................GTCCTCGGCTGCAAAGCGAGTAAGGT......................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................CGGCTGCCAAGCTAGTAAGGTATGT..................................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0
................................................................................................................................CTGCAAAGCTAGTAAGGTATGTCAT.................................................................................................. 25 0 20 0.05 1 0 0 0 1 0 0
........................................................................................................................................CTAGTAAGGTACGTCATGATAAGTGGT........................................................................................ 27 2 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................................GCGGTATGTGAGAAACGTCGCTT.............................................. 23 0 20 0.05 1 0 1 0 0 0 0
....................................................................................................................CTATGTCCTCGGTTGCAAAGCTAGTAAG........................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
........TTAAAGCGGAGAAGAATAGTAGTTCGT........................................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................TCGCTTGCCGTGTCTTTATTTTTGT........................... 25 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................AGCTATGTCCTCGGCTGCAAAGCTAGTA............................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................ATGTTTTGCGGTTAGCGGTATGTGAG......................................................... 26 0 20 0.05 1 1 0 0 0 0 0
....TTCATTAAAGCGGATAAGAATAGTCG............................................................................................................................................................................................................................. 26 2 20 0.05 1 0 0 0 1 0 0
........................................................................................................................GTCCTCGGCTGCAAAGCTAGTAAGGTA........................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................AGCTATGTCCTCGGCTGCAAAGCTAGTAA............................................................................................................ 29 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................TCCTCGGCTGCAAAGCTAGTAAGGT......................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................TGCAAAGCTAGTAAGGTATGTCAT.................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................CGTGGTAGGCGAAATGTGACCT. 22 1 20 0.05 1 1 0 0 0 0 0
............AGCGGAGAAGAATAGTAGTTCGTAA...................................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................GGCTGCAAAGCTAGTAAGGT......................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................TCTTATATGTTTTGCGGTTAGCGGTA............................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................TATATGTTTTGCGGTTAGCGGTAT.............................................................. 24 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................TTGCGGTTAGCGGTATGTGAGAAA...................................................... 24 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................ATGTCCTCGGCTGCAAAGCTAGTAAG........................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................CTTGCCGTGTCTTTATTTTTGTAT......................... 24 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................................AAACGTCGCTTGCCGTATCTTTATT................................ 25 1 20 0.05 1 1 0 0 0 0 0
..............CGGAGAAGAATAGTAGTTC.......................................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0
........................................................................................................TTTAAAAATCAGCTATGTCCTCGGCT......................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................TCGCTTGCCGTGTCTTTAT................................. 19 0 20 0.05 1 0 0 0 0 0 1
...............................................................................................................................GCTGCAAAGCTAGTAAGGTATGTCA................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................GCTATGTCCTCGGCTGCAAAGCTAGTAA............................................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................GGTTAGCGGTATGTGAGAAACGT................................................... 23 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................TCTTATATGTTTTGCGGTTAGCGGTAT.............................................................. 27 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................TATATGTTTTGCGGTTAGCGGTATG............................................................. 25 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................CAGCTATGTCCTCGGTTGCATAGCTAGTA............................................................................................................. 29 2 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................CGGCTGCAAAGCTAGTAAGGTACGT..................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................TCCTCGGCTGCAAAGCTAGTA............................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................CTATGTCCTCGGCTGCAAAGCTAGTAA............................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................TATGTCCTCGGCTGCAAAGCTAG............................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................CTCGGCCGCAAAGGTAGGA............................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0
...........................................................................................................................CTCGGCTGCAAAGCTAGTAAGGTA........................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................................GTCGCTTGCCGTGTCTTTATTTTTGTAG......................... 28 1 20 0.05 1 1 0 0 0 0 0
............................................................................................................................TCGGCTGCAAAGCTAGTCAGGTATG...................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................................ATGTTTTGCGGTTAGCGGTATGT............................................................ 23 0 20 0.05 1 0 1 0 0 0 0
.....TCATTAAAGCGGAGAAGAATAGTAT............................................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................................CGTCGCTTGCCGTGTCTTTATTTT.............................. 24 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................TGTCCTCGGCTGCAAAGCTAGTAAG........................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..................................................................................TGGTCTGTGGGTTTGACGCT..................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0
.....CCATTAAAGCGGAGAAGAATAGTAGTT........................................................................................................................................................................................................................... 27 1 20 0.05 1 0 0 0 1 0 0
..............................................................................................................................................................................................TGAGAAACGTCGCTTGCCGTGTCTTT................................... 26 0 20 0.05 1 0 0 0 1 0 0
..........................................................................................................................CCTCGGCTGCAAAGCTAGTGAGGTATGT..................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................ATATGTTTTGCGGTTAGCGGTATTT............................................................ 25 1 20 0.05 1 0 1 0 0 0 0
........TTAAAGCGGAGAAGAATAGTAGGT........................................................................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................TTCTTATATGTTTTGCGGTTAGCGGTAT.............................................................. 28 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................................................GAGAAACGTCGCTTGCCGTGTCTTTATT................................ 28 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................CCTCGGCTGCAAAGCTAGTAAGGGA........................................................................................................ 25 1 20 0.05 1 0 1 0 0 0 0
.......ATTAAAGCGGAGAAGAATAGTAGT............................................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................CCTCGGCTGCAAAGCTAGTAAGGTATG...................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.....TCATTAAAGCGGAGAAGAATAGTAGT............................................................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................CAGCTGCAAAGCTAGTAAGGTTTGT..................................................................................................... 25 2 20 0.05 1 0 1 0 0 0 0
........................................................................................................................GTCCTCGGCTGCAAAGCTAGTAAG........................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
........TTAAAGCGGAGAAGAATAGTAGTTC.......................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................CCTCGGTTGCAAAGCTAGTAAGG.......................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................CGGCTGCAAAGCTAGTAAGGT......................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12943:1983481-1983731 - dan_925 GATTAAGT---AATT--T--CGCCTCTTCTTATCATCAAGCATTC-CAAATTAATGTTCACAGAATCTCTTACTGCAACCGACTCTTTGTACCAGACGCCCAATCTGGGAGAAAATTTTTAGTCGATACAGGAGCCGACGTTTCGATCATTCCATACAGTACTATTCACAAG-AATATACAAAACGCCA-------ATCGCCATACACTCTTTGCAGCGAACGGCACAGAAATAAAAACATACGGCACCATCCGCTTGACACTGGAC
droBip1 scf7180000395478:33731-33970 + GAACACG---------------TTTATTCACCTCTCCGTATAATC-AAAATCAACGTACACAAAATTTCA---TGCAACCTACTTTTCGTACCAGACGCCCAATCTGGTACACAATTTTCAGTCGATACTGGAGCCGACGTATCGATTATTCCATCCAGCGAAATGCACAGC-AATAAGCAAAACGCCA-------ACTGGCATACACTCTTTGCAGTGAACGGCACAGAAGTGAAATCATACGGCACCATCCGCTTGACACTGGAC
droKik1 scf7180000299059:5670-5920 + GTCGTAAC---GCAA--A--TGCCCCACAACGCCTACCATTGCTC-AAAGTAAACATCTGCAGAATTTCGTCCTCTAACCGTCTCTTCGTTCCAGACTCCACATCGGGAAAAAGTTTTCTCATCGACACTGGAGCTGACGTATCCGTTATACCACCAAACACAATCAATCGG-CACATCGCAGCTGCTA-------ACAGCCATACACTATTCGCAGCCAATGGAACAGCAATTCAAACTTATGGAACCACTCGCCTTACGCTGGAT
droFic1 scf7180000453919:1731-1937 + GACAAATT------------------------------------C-GAAGAAGACCACAACACAATT---------GCCCGCCTCGCCATCAACGACAATTTCCCCAAAACTCAATTTCTGATCGACACCGGCGCCGACATTTCAGTGATGCCACCCTGCAAAAAC--------GTAAAAA-----CTA-TGCTCACTCCAAAGCTTCTTTTCGCCGCCAATGGCACGAAAATACAAACCTATGGAGAAAAACGCATAACATTGTCA
droEle1 scf7180000490971:473470-473700 - CCTAACA----GTAA--ACATTCCTC---------------ACTCAAAAAAAAATATCTGCAGAATTTTATCCCCTAATCGTCTTGTAGTTAAAGA-------TCAAGCAATAGTTTTCGTATAGATACTGGAACTGACGTATCGGTTATACCACAATTTACAATAAATCGA-CACATTGTAGCAATTA-------TCGTTCATACAATATTTGCAGCCAATGAAACCGCGATCAAAACTTACGGTACCACTCGTTTAACTCTGGAC
droRho1 scf7180000765341:13388-13638 - GTCGTGAC---GCAA--A--TGCTCCACCACTCTACCCATTGCTC-AAAGTAAACATCTGCAGAATTTCGTCCTCCAATCGTCTCTTCGTTCCAGACTCCAAATCGGGTAAAAATTTTCTTATCGACACTGGAGCTGACGTATCTGTTATACCACCCAGCACAATTAATCAA-CACATCGCAGTCACTA-------ATGAACCTACACTATTTGCAGCCAATTGAACAGCAATAAAAACTTATGGCACCACTCGCCTTACGCTGGAT
droBia1 scf7180000302468:19940-20151 + A-----------------------------------------------AGTAAACATCTACAAAATTTCATCCTCCAACCATCTTTTTGTTCCGGACTCCAAATCGGGTAAAACTTTTCTCATCGACACTGGAGCAGACGTATCTGTTATACCACCAAAAACCATTAATCAA-CACATCATAGCTAATA-------ATAACCATACACTATTCGCAGCCAATGAAACAGCAATCCAAACTTATGGTACCACCCGCCTTACGCTGGAC
droTak1 scf7180000414129:49079-49329 - GTTTTATT---GCAA--A--TGCCTCACTACCGTACCCCGTTCTC-AAAGTAAGCATCTGTAGAATTTCGTCTTCCAATCGTCTCTTCGTTCCAGACTCCAAATCTGGTAAATGTTTTCTCATCGACACTGGAGCTGACGTATCTGTTATACCACCAAACACAATTAATCGA-CACATTCCAGCTAATA-------ATAACCATTCACTATTGGCAGCCAATGGAACAGCTATACAAACGTATGGGACCACTCGCCTTACGCTAGAT
dm3 chr2RHet:892366-892426 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTACGCGGCCAACACGTCTATAATTGATACCTACGGCACGCTAAATCTAACTTTTGGT
droSec2 scaffold_0:590573-590720 + A---------------------------------------------------------------------------------------------------------------AAATTCCTTATCGACTCCGGATCAGTCATCTCACTTATACCTGTTTCGATAATCAAAGGATTGCATCGTCG-CAAAG-------ACGACTTCAAACTCTACGCGGCCAACACGTCTATAATTGATACCTACGGCACGCTAAATCTAACTTTTGGT
droYak3 v2_chrUn_002:59193-59386 - AGGGCCACTGCACAATTG--CCCGCCTCAG-------------------------------------------CATCAGCGACAGCTTTTC-------------CAAACAAAAAATTCCTTATCGACACCGGCGCCGACATTTCAGTGTTGCCACCCTGTAAAAAT--------GCAAAA------CTAATACCCACTCCAGGGCTTCTTTTCGCAGCCAATGGCTTAAAAATACAAACCTATGGAGAA-ATCGCATAACATTATCA
droEre2 scaffold_4781:7406-7553 - A---------------------------------------------------------------------------------------------------------------AAATTCCTTATCGATTCCGGATCAGTCATCTCACTCATACCTGTTTCGATAATCAAGGGTATACATCGTCG-CAAAG-------ACGACTTCAAACTCTACGCGGCCAACACGTCTATAATTGATACCTACGGCACGATAGATCTAACTTTTGGT
dp5 Unknown_group_839:3009-3195 + TCAC---------------------------------------------------------------------GATAACCGACTGCACATCCAAGATAAAAAAACTAGTCGGATTTTTCTCATCGATTCCGGATCGGTGGGGTCAGTTATACCTT---GCACTCTGTCTCAA-CGCAAACTAAGCGATG-------ACAAACTGAAATTTTATGCCGCAAACCAGACTACCATTCGAACCTTCGGAAATCAGGACCTCGAACTCGAC
droPer2 scaffold_51:221567-221753 + TCAC---------------------------------------------------------------------GACCACCGACTGCACATCCAAGATAAAAAAACTAGTCGGATTTTTCTCATCGATTCCGGATCGGTGGGGTCAGTTATACCTT---GCACTCTGTCTCAA-CGCAAACTAAGCGATG-------ACAAACTGAAATTTTATGCCGCAAACCAGACTACCATTCGAACCTTCGGAAATCAGGACCTCGAACTCGAC
droWil2 scf2_1100000004852:375586-375726 + -------------------------------------------------------------------------------------------------------------------TTTCTCATTGACTCAGGGTCTGACATTTCTGTTGTTCCACAATCATTCTTCAAGCAA-AAAAC---CAAACCTT-------GCAACCTCATTTTATATGCTGCCAATAAATCAATCATGAACACGTACGGCCAATACGTTGCAGAGCTCAAT
droVir3 scaffold_12728:238027-238274 - AACAATCT---GTTC--A--TGCCATAAAAAATTGTTTCAAGCTT-AGTATAAACGTTCACAGTATAATAACCTCTAATCGACTTTTTATTCCAGATACAAAGTCTGGTAAAAATTTCC-TTACGACACTGGCGCAGTTTTGTCAGTCATACCTTC-TGCACCATAAACCGA-CGTTTTTAAGCCAGCG-------GCTAAAATCC-CCTTTTTCTGCTAACGGCACTACCATTAAAACATATGGTTCAACTCGCCTTACTCTAGAT
droMoj3 scaffold_3922:2346-2596 + GGCAACCC---CAAC--A--CGCCTTTCAAAATAGCCCAAAACTT-AAGGTTGAAGTACATAGCATTTCCACTTCTAATCGTTTGTTTATTCCAGATGCTAAGTCTGGTCGAAAATTCCTCATCGACACAGGAGCAGACATCTCTGTAATACCCACCTCAACAATAAACCGA-CGATTAAATATCTGCA-------ATGAAAATCCACTATTTGCAGCCAACGGATCCACAATCAACACATACGGCACAACTCGCCTTACACTCGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GATTAAGT---AATT--T--CGCCTCTTCTTATCATCAAGCATTC-CAAATTAATGTTCACAGAATCTCTTACTGCAACCGACTCTTTGTACCAGACGCCCAATCTGGGAGAAAATTTTTAGTCGATACAGGAGCCGACGTTTCGATCATTCCATACAGTACTATTCACAAG-AATATACAAAACGCCA-------ATCGCCATACACTCTTTGCAGCGAACGGCACAGAAATAAAAACATACGGCACCATCCGCTTGACACTGGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................CTCTTACTGCAACCGACTCTTTGTA................................................................................................................................................................................2511.001100000
.........................................................TCACAGAATCTCTTACTGCAACCGAC........................................................................................................................................................................................2621.002200000
.................................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCACC..................24180.67120120000
........................................................TTCACAGAATCTCTTACTGCAACCGACT.......................................................................................................................................................................................2820.501010000
................................TCATCAAGCATTC-CAAATTAATGTT.................................................................................................................................................................................................................2520.501010000
.......................................................GTTCACAGAATCTCTTACTGCAACC...........................................................................................................................................................................................2520.501100000
............................CTTATCATCAAGCATTC-CAAATTAATGTT.................................................................................................................................................................................................................2920.501010000
......................................................TGTTCACAGAATCTCTTACTGCAACCG..........................................................................................................................................................................................2720.501100000
......................................................TGTTCACAGAATCTCTTACTGCAACCGAC........................................................................................................................................................................................2920.501100000
.......................................................GTTCACAGAATCTCTTACTGCAACCGA.........................................................................................................................................................................................2720.501100000
.................................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCACCA.................25180.397160000
................................................................................................................................................................................................................................CACAGAAATAAAAACATACGGCACC..................25170.244130000
.................................................................................................................................................................................TACAAAACGCCA-------ATCGCCATACACTCT........................................................27200.153300000
........................................................................................................................................................................................CGCCA-------ATCGCCATACACTCTTTGCAGC.................................................27200.153210000
.................................................................................................................................................................................TACAAAACGCCA-------ATCGCCATACACTCTT.......................................................28200.153120000
.......................................................................................................................................................CCATACAGTACTATTCACAAG-AATA..........................................................................................25160.132200000
......................................................................................TTGTACCAGACGCCCAATCTG................................................................................................................................................................2190.111100000
...........................................................................................................................................................................................................TACACTCTTTGCAGCGAACGGCACAGA.....................................27200.102200000
...........................................................................................................................................................................G-AATATACAAAACGCCA-------ATCGCCATA..............................................................26200.102110000
.................................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCACCATCC..............28150.071010000
................................................................................................................................................GATCATTCCATACAGTACTATTCAC..................................................................................................25160.061100000
................................................................................................................................................GATCATTCCATACAGTACTATTCACA.................................................................................................26160.061010000
....................................................................................................................................................ATTCCATACAGTACTATTCACAA................................................................................................23160.061010000
...........................................................................................................................................GTTTCGATCATTCCATACAGTACTAT......................................................................................................26160.061100000
................................................................................................................................................GATCATTCCATACAGTACTATTC....................................................................................................23160.061100000
..................................................................................................................................................................................................................................CAGAAATAAAAACATACGGCACCATC...............26160.061010000
...........................................................................................................................................GTTTCGATCATTCCATACAGTACTA.......................................................................................................25160.061010000
............................................................................................................................................................................................................................................AACATACGGCACCATCCGCTTGACAC.....26170.061010000
............................................................................................................................................................................................................................ACGGCACAGAAATAAAAACATACGGCAC...................28170.061010000
.................................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCACCAT................26170.061010000
.................................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCACT..................24180.061010000
.................................................................................................................................................................................................................................ACAGAAATAAAAACATACGGCAC...................23180.061010000
..................................................................................................................................................................................................................................CAGAAATAAAAACATACGGCACC..................23180.061010000
..TTAAGT---AATT--T--CGCCTCTTCTTATCATC......................................................................................................................................................................................................................................28190.051010000
................................................................................................................................................................................................................................CACAGAAATAAAAACATACGGCA....................23190.051010000
...............................................................................................................................................................................TATACAAAACGCCA-------ATCGCCATACACTCT........................................................29200.051100000
.................................................................................................................................................................CTATTCACAAG-AATATACAAAACGCC...............................................................................26200.051010000
...........................................................................................................................CGATACAGGAGCCGACGTTTC...........................................................................................................................21200.051100000
...........................................................................................................................CGATACAGGAGCCGACGTTTCG..........................................................................................................................22200.051100000
......................................................................................................................................................................................AACGCCA-------ATCGCCATACACTCTTTGC....................................................26200.051010000
...........................................................................................................................................................................................................TACACTCTTTGCAGCGAACGGCACA.......................................25200.051010000
............................................................................................................................................................................................................ACACTCTTTGCAGCGAACGGCACAG......................................25200.051100000
...................................................................................................................................................................................CAAAACGCCA-------ATCGCCATACACTCTTTG.....................................................28200.051100000
.....................................................................................................................................................................................................TCGCCATACACTCTTTGCAGCGAACG............................................26200.051100000
...............................................................................................................................................................................TATACAAAACGCCA-------ATCGCCATACACT..........................................................27200.051100000
.............................................................................................................................................................................AATATACAAAACGCCA-------ATCGCCATACACT..........................................................29200.051100000
...............................................................................................................................................................................TATACAAAACGCCA-------ATCGCCATACACC..........................................................27200.051010000
......................................................................................................................................................................................................................................AATAAAAACATACGGCACCATCCGCT...........26200.051010000
.........................................................................................................................................................................................................................................AAAAACATACGGCACCAT................18200.051010000
........................................................................................................................AGTCGATACAGGAGCCGACGTTTCGATC.......................................................................................................................28200.051100000
...........................................................................................................................................................................................CA-------ATCGCCATACACTCTTTGCAG..................................................23200.051100000
.................................................................................................................................................................................TACAAAACGCCA-------ATCGCCATACACTC.........................................................26200.051100000
.....................................................................................................................................GCCGACGTTTCGATCATTCCATACA.............................................................................................................25200.051100000
......................................................................................................................................................................................................................................AATAAAAACATACGGCACCATCCGCTT..........27200.051100000
..............................................................................................................................TACAGGAGCCGACGTTTCGATCATTCC..................................................................................................................27200.051010000
...............................................................................................................................................................................................................CTCTTTGCAGCGAACGGCACAGA.....................................23200.051100000
droBip1
GAACACG---------------TTTATTCACCTCTCCGTATAATC-AAAATCAACGTACACAAAATTTCA---TGCAACCTACTTTTCGTACCAGACGCCCAATCTGGTACACAATTTTCAGTCGATACTGGAGCCGACGTATCGATTATTCCATCCAGCGAAATGCACAGC-AATAAGCAAAACGCCA-------ACTGGCATACACTCTTTGCAGTGAACGGCACAGAAGTGAAATCATACGGCACCATCCGCTTGACACTGGACSizeHit CountTotal NormTotal
No Reads
droKik1
GTCGTAAC---GCAA--A--TGCCCCACAACGCCTACCATTGCTC-AAAGTAAACATCTGCAGAATTTCGTCCTCTAACCGTCTCTTCGTTCCAGACTCCACATCGGGAAAAAGTTTTCTCATCGACACTGGAGCTGACGTATCCGTTATACCACCAAACACAATCAATCGG-CACATCGCAGCTGCTA-------ACAGCCATACACTATTCGCAGCCAATGGAACAGCAATTCAAACTTATGGAACCACTCGCCTTACGCTGGATSizeHit CountTotal NormTotal
No Reads
droFic1
GACAAATT------------------------------------C-GAAGAAGACCACAACACAATT---------GCCCGCCTCGCCATCAACGACAATTTCCCCAAAACTCAATTTCTGATCGACACCGGCGCCGACATTTCAGTGATGCCACCCTGCAAAAAC--------GTAAAAA-----CTA-TGCTCACTCCAAAGCTTCTTTTCGCCGCCAATGGCACGAAAATACAAACCTATGGAGAAAAACGCATAACATTGTCASizeHit CountTotal NormTotal
No Reads
droEle1
CCTAACA----GTAA--ACATTCCTC---------------ACTCAAAAAAAAATATCTGCAGAATTTTATCCCCTAATCGTCTTGTAGTTAAAGA-------TCAAGCAATAGTTTTCGTATAGATACTGGAACTGACGTATCGGTTATACCACAATTTACAATAAATCGA-CACATTGTAGCAATTA-------TCGTTCATACAATATTTGCAGCCAATGAAACCGCGATCAAAACTTACGGTACCACTCGTTTAACTCTGGACSizeHit CountTotal NormTotal
No Reads
droRho1
GTCGTGAC---GCAA--A--TGCTCCACCACTCTACCCATTGCTC-AAAGTAAACATCTGCAGAATTTCGTCCTCCAATCGTCTCTTCGTTCCAGACTCCAAATCGGGTAAAAATTTTCTTATCGACACTGGAGCTGACGTATCTGTTATACCACCCAGCACAATTAATCAA-CACATCGCAGTCACTA-------ATGAACCTACACTATTTGCAGCCAATTGAACAGCAATAAAAACTTATGGCACCACTCGCCTTACGCTGGATSizeHit CountTotal NormTotal
No Reads
droBia1
A-----------------------------------------------AGTAAACATCTACAAAATTTCATCCTCCAACCATCTTTTTGTTCCGGACTCCAAATCGGGTAAAACTTTTCTCATCGACACTGGAGCAGACGTATCTGTTATACCACCAAAAACCATTAATCAA-CACATCATAGCTAATA-------ATAACCATACACTATTCGCAGCCAATGAAACAGCAATCCAAACTTATGGTACCACCCGCCTTACGCTGGACSizeHit CountTotal NormTotal
No Reads
droTak1
GTTTTATT---GCAA--A--TGCCTCACTACCGTACCCCGTTCTC-AAAGTAAGCATCTGTAGAATTTCGTCTTCCAATCGTCTCTTCGTTCCAGACTCCAAATCTGGTAAATGTTTTCTCATCGACACTGGAGCTGACGTATCTGTTATACCACCAAACACAATTAATCGA-CACATTCCAGCTAATA-------ATAACCATTCACTATTGGCAGCCAATGGAACAGCTATACAAACGTATGGGACCACTCGCCTTACGCTAGATSizeHit CountTotal NormTotal
No Reads
dm3
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTACGCGGCCAACACGTCTATAATTGATACCTACGGCACGCTAAATCTAACTTTTGGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.................................................................................................................................................................................................................CTACGCGGCCAACACGTC........................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TCTACGCGGCCAACACGTCTATA....................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ACACGTCTATAATTGATACCTACGGC.....................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAATTGATACCTACGGCACGCTAAATCAG.........29190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TATAATTGATACCTACGGCACGCTAATA............28190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ATAATTGATACCTACGGCACGCT................23190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TTGATACCTACGGCACGCTAAATCTATT.......28190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AATTGATACCTACGGCACGCTAAATCTA.........28190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GATACCTACGGCACGCTAAAT............21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AATTGATACCTACGGCACGCTA...............22190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GATACCTACGGCACGCTAAA.............20190.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TTGATACCTACGGCACGCTAAATCTAT........27190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TGATACCTACGGCACGCTAAA.............21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TTGATACCTACGGCACGCTAAATA...........24190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TGATACCTACGGCACGCTAAT.............21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATACCTACGGCACGCTAAATCTA.........23190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAATTGATACCTACGGCACGCTA...............23190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATACCTACGGCACGCTAA..............18190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSec2
A---------------------------------------------------------------------------------------------------------------AAATTCCTTATCGACTCCGGATCAGTCATCTCACTTATACCTGTTTCGATAATCAAAGGATTGCATCGTCG-CAAAG-------ACGACTTCAAACTCTACGCGGCCAACACGTCTATAATTGATACCTACGGCACGCTAAATCTAACTTTTGGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................TCAAACTCTACGCGGCCAACACGTC........................................2561.0065010
...................................................................................................................................................TATACCTGTTTCGATAATCAAAGG................................................................................................2421.0022000
.......................................................................................................................TTATCGACTCCGGATCAGTCATCTCAC.........................................................................................................................2790.7877000
..............................................................................................................................................................................................................................ACGTCTATAATTGATACCTACGGCACGC.................2880.7566000
...................................................................................................................TTCCTTATCGACTCCGGATCAGTCATC.............................................................................................................................2790.6766000
.......................................................................................................................TTATCGACTCCGGATCAGTCATCTC...........................................................................................................................2590.6766000
.......................................................................................................................TTATCGACTCCGGATCAGTCATCTCA..........................................................................................................................2690.6766000
...........................................................................................................................................................................................................CAAACTCTACGCGGCCAACACGTCTA......................................2660.6744000
..............................................................................................................................................................................................................................ACGTCTATAATTGATACCTACGGCA....................2580.6354010
.....................................................................................................................CCTTATCGACTCCGGATCAGTCATC.............................................................................................................................2590.5655000
..............................................................................................................................................................................................................................ACGTCTATAATTGATACCTACGGC.....................2480.5044000
............................................................................................................................................................................TTGCATCGTCG-CAAAG-------ACGACTTCAAAC...........................................................2880.5044000
..............................................................................................................................................................................................................................ACGTCTATAATTGATACCTACGG......................2380.5044000
....................................................................................................................................................ATACCTGTTTCGATAATCAAAGGA...............................................................................................2420.5011000
....................................................................................................................TCCTTATCGACTCCGGATCAGTCATCT............................................................................................................................2790.4444000
....................................................................................................................TCCTTATCGACTCCGGATCAGTCATC.............................................................................................................................2690.4443010
.................................................................................................................................................................................TCGTCG-CAAAG-------ACGACTTCAAACTC.........................................................2580.3833000
...........................................................................................................................................................................................................CAAACTCTACGCGGCCAACACGT.........................................2360.3322000
...........................................................................................................................................................................................................CAAACTCTACGCGGCCAACACG..........................................2260.3322000
...........................................................................................................................................................................................................CAAACTCTACGCGGCCAACACGTCT.......................................2560.3322000
.........................................................................................................................................................................................................TTCAAACTCTACGCGGCCAACACGTC........................................2660.3322000
............................................................................................................................................................................................................AAACTCTACGCGGCCAACACGTCTA......................................2560.3321010
...........................................................................................................................................................................................................CAAACTCTACGCGGCCAACACGTC........................................2460.3321010
..........................................................................................................................................................................................................TCAAACTCTACGCGGCCAAC.............................................2070.2922000
.............................................................................................................................................................................TGCATCGTCG-CAAAG-------ACGACTTCAAACTC.........................................................2980.2522000
.............................................................................................................................................................................................................................CACGTCTATAATTGATACCTACGGCACGC.................2980.2522000
..................................................................................................................................................................................................................TACGCGGCCAACACGTCTATAATTGA...............................2680.2520020
............................................................................................................................................................................................................................................TACCTACGGCACGCTAAATCT..........2180.2522000
.......................................................................................................................TTATCGACTCCGGATCAGTC................................................................................................................................2090.2222000
.......................................................................................................................TTATCGACTCCGGATCAGTCATCTCACT........................................................................................................................2890.2222000
.....................................................................................................................CCTTATCGACTCCGGATCAGTCATCTCAC.........................................................................................................................2990.2222000
........................................................................................................................TATCGACTCCGGATCAGTCATCTCA..........................................................................................................................2590.2221010
...............................................................................................................................TCCGGATCAGTCATCTCACTTATACC..................................................................................................................2690.2222000
......................................................................................................................CTTATCGACTCCGGATCAGTCATCT............................................................................................................................2590.2222000
.....................................................................................................................CCTTATCGACTCCGGATCAGTCATCTC...........................................................................................................................2790.2222000
...................................................................................................................TTCCTTATCGACTCCGGATCAGTCA...............................................................................................................................2590.2222000
..............................................................................................................................................................................................................ACTCTACGCGGCCAACACGTCTAT.....................................2460.1711000
..........................................................................................................................................................................................................TCAAACTCTACGCGGCCAACAC...........................................2260.1711000
..........................................................................................................................................................................................................TCAAACTCTACGCGGCCAACACGT.........................................2460.1711000
.........................................................................................................................................................................................................TTCAAACTCTACGCGGCCAACACGTA........................................2660.1711000
............................................................................................................................................................................................................AAACTCTACGCGGCCAACACGTCTATAA...................................2860.1711000
................................................................................................................................................................................................................TCTACGCGGCCAACACGTCTATAAT..................................2570.1411000
............................................................................................................................................................................................................................................TACCTACGGCACGCTAAATCTAAC.......2480.1311000
................................................................................................................................................................................ATCGTCG-CAAAG-------ACGACTTCAAACT..........................................................2580.1311000
...................................................................................................................................................................................................................ACGCGGCCAACACGTCTATAATTGA...............................2580.1311000
..............................................................................................................................................................................................................................ACGTCTATAATTGATACCTACGGCAC...................2680.1311000
..............................................................................................................................................................................................................................ACGTCTATAATTGATACCTACGGCACGA.................2880.1311000
...................................................................................................................................................................................................................................TATAATTGATACCTACGGCACGCTAAAA............2880.1311000
..................................................................................................................................................................................................................TACGCGGCCAACACGTCTATA....................................2180.1311000
.............................................................................................................................................................................TGCATCGTCG-CAAAG-------ACGACTTCAAAC...........................................................2780.1310010
............................................................................................................................................................................................................................................TACCTACGGCACGCTAAATCTAA........2380.1311000
.........................................................................................................................................................................................................................................TGATACCTACGGCACGCTAA..............2080.1310001
.............................................................................................................................................................................TGCATCGTCG-CAAAG-------ACGACTTCAAACT..........................................................2880.1311000
............................................................................................................................................................................................................................................TACCTACGGCACGCTAAATC...........2080.1310010
..........................................................................................................................TCGACTCCGGATCAGTCATCTCACT........................................................................................................................2590.1111000
....................................................................................................................TCCTTATCGACTCCGGATCAGTCAT..............................................................................................................................2590.1111000
.......................................................................................................................TTATCGACTCCGGATCAGTCATCT............................................................................................................................2490.1110010
........................................................................................................................TATCGACTCCGGATCAGTCATCTC...........................................................................................................................2490.1111000
.................................................................................................................AATTCCTTATCGACTCCGGATCAGTC................................................................................................................................2690.1111000
....................................................................................................................TCCTTATCGACTCCGGATCAGTCATCTCA..........................................................................................................................2990.1111000
.............................................................................................................................................................................TGCATCGTCG-CAAAG-------ACGACT.................................................................2190.1111000
.......................................................................................................................TTATCGACTCCGGATCAGTCATC.............................................................................................................................2390.1110010
.....................................................................................................................CCTTATCGACTCCGGATCAGTCATCTAT..........................................................................................................................2890.1111000
..........................................................................................................................TCGACTCCGGATCAGTCATCT............................................................................................................................2190.1110010
........................................................................................................................TATCGACTCCGGATCAGTCATCT............................................................................................................................2390.1111000
.....................................................................................................................CCTTATCGACTCCGGATCAGTCATCTCA..........................................................................................................................2890.1111000
....................................................................................................................TCCTTATCGACTCCGGATCAGTCATCTCT..........................................................................................................................2990.1111000
.........................................................................................................................ATCGACTCCGGATCAGTCATCTCACA........................................................................................................................2690.1111000
........................................................................................................................TATCGACTCCGGATCAGTCATCTCACT........................................................................................................................2790.1111000
......................................................................................................................CTTATCGACTCCGGATCAGTCATCTCA..........................................................................................................................2790.1111000
.......................................................................................................................TTATCGACTCCGGATCAGTCATCTCACTT.......................................................................................................................2990.1111000
.........................................................................................................................ATCGACTCCGGATCAGTCATCTCA..........................................................................................................................2490.1111000
.........................................................................................................................ATCGACTCCGGATCAGTCATCTCACT........................................................................................................................2690.1110010
........................................................................................................................TATCGACTCCGGATCAGTCATCTCAC.........................................................................................................................2690.1111000
....................................................................................................................TCCTTATCGACTCCGGATCAGTCATCTC...........................................................................................................................2890.1111000
...................................................................................................................TTCCTTATCGACTCCGGAC.....................................................................................................................................1990.1111000
droYak3
AGGGCCACTGCACAATTG--CCCGCCTCAG-------------------------------------------CATCAGCGACAGCTTTTC-------------CAAACAAAAAATTCCTTATCGACACCGGCGCCGACATTTCAGTGTTGCCACCCTGTAAAAAT--------GCAAAA------CTAATACCCACTCCAGGGCTTCTTTTCGCAGCCAATGGCTTAAAAATACAAACCTATGGAGAA-ATCGCATAACATTATCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
A---------------------------------------------------------------------------------------------------------------AAATTCCTTATCGATTCCGGATCAGTCATCTCACTCATACCTGTTTCGATAATCAAGGGTATACATCGTCG-CAAAG-------ACGACTTCAAACTCTACGCGGCCAACACGTCTATAATTGATACCTACGGCACGATAGATCTAACTTTTGGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................CACGTCTATAATTGATACCTACGGCA....................2643.251300000013
.........................................................................................................................................................................................................TTCAAACTCTACGCGGCCAACACGTC........................................2671.431000000010
..........................................................................................................................................................................................AAG-------ACGACTTCAAACTCTACGCGGC.................................................25111.271400000014
......................................................................................................................................................................................G-CAAAG-------ACGACTTCAAACTCTACGCGG..................................................27111.001100000011
..............................................................................................................................................................................................................................ACGTCTATAATTGATACCTACGGC.....................2450.8040000004
..........................................................................................................................................................................................................................CAACACGTCTATAATTGATACCTACGG......................2750.8040000004
.........................................................................................................................................................................................AAAG-------ACGACTTCAAACTCTACGCGGC.................................................26110.7380000008
................................................................................................................................................................................................................TCTACGCGGCCAACACGTCTATAATTGAT..............................2950.6030000003
..................................................................................................................................................................................................................................CTATAATTGATACCTACGGCACGT.................2450.2011000000
dp5
TCAC---------------------------------------------------------------------GATAACCGACTGCACATCCAAGATAAAAAAACTAGTCGGATTTTTCTCATCGATTCCGGATCGGTGGGGTCAGTTATACCTT---GCACTCTGTCTCAA-CGCAAACTAAGCGATG-------ACAAACTGAAATTTTATGCCGCAAACCAGACTACCATTCGAACCTTCGGAAATCAGGACCTCGAACTCGACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................CCAGACTACCATTCGAACCTTCGGAAA...................2711.0010010000000
droPer2
TCAC---------------------------------------------------------------------GACCACCGACTGCACATCCAAGATAAAAAAACTAGTCGGATTTTTCTCATCGATTCCGGATCGGTGGGGTCAGTTATACCTT---GCACTCTGTCTCAA-CGCAAACTAAGCGATG-------ACAAACTGAAATTTTATGCCGCAAACCAGACTACCATTCGAACCTTCGGAAATCAGGACCTCGAACTCGACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................ATCGATTCCGGATCGGTG................................................................................................................................1860.171010000
........................................................................................................................................................................................CGATG-------ACAAACTGAAATT..........................................................1880.131010000
droWil2
-------------------------------------------------------------------------------------------------------------------TTTCTCATTGACTCAGGGTCTGACATTTCTGTTGTTCCACAATCATTCTTCAAGCAA-AAAAC---CAAACCTT-------GCAACCTCATTTTATATGCTGCCAATAAATCAATCATGAACACGTACGGCCAATACGTTGCAGAGCTCAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AACAATCT---GTTC--A--TGCCATAAAAAATTGTTTCAAGCTT-AGTATAAACGTTCACAGTATAATAACCTCTAATCGACTTTTTATTCCAGATACAAAGTCTGGTAAAAATTTCC-TTACGACACTGGCGCAGTTTTGTCAGTCATACCTTC-TGCACCATAAACCGA-CGTTTTTAAGCCAGCG-------GCTAAAATCC-CCTTTTTCTGCTAACGGCACTACCATTAAAACATATGGTTCAACTCGCCTTACTCTAGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................TTCACAGTATAATAACCTCTAATCGAC........................................................................................................................................................................................2720.501000000000000000000000000000000000000100000000000000000000000000
droMoj3
GGCAACCC---CAAC--A--CGCCTTTCAAAATAGCCCAAAACTT-AAGGTTGAAGTACATAGCATTTCCACTTCTAATCGTTTGTTTATTCCAGATGCTAAGTCTGGTCGAAAATTCCTCATCGACACAGGAGCAGACATCTCTGTAATACCCACCTCAACAATAAACCGA-CGATTAAATATCTGCA-------ATGAAAATCCACTATTTGCAGCCAACGGATCCACAATCAACACATACGGCACAACTCGCCTTACACTCGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................TCCACAATCAACACATACGGCACAAC................2670.574300010
.................................................................................................................................................................................................................................TCCACAATCAACACATACGGCACA..................2480.504300010
.......................................................GTACATAGCATTTCCACTTCTAATCGTT........................................................................................................................................................................................2880.383300000
.................................................................................................................................................................................................................................TCCACAATCAACACATACGGCAC...................2380.383000030
................................................................................................................AAATTCCTCATCGACACAGGAGC....................................................................................................................................2380.383300000
........................................................................................................................................................................................................AAATCCACTATTTGCAGCCAACGG...........................................2460.171100000
.................................................................................................................................................................................................................................TCCACAATCAACACATACGGCACAACTC..............2870.141100000
..................................................................................................................................................................................................................................CCACAATCAACACATACGGCACAAC................2570.141100000
........................................................................................................................................................................................................................................TCAACACATACGGCACAACTCGCCT..........2570.141100000
.................................................................................................................................................................................................................................TCCACAATCAACACATACGGCACAACT...............2770.141100000
......................................................................................................................CTCATCGACACAGGAGCAGACA...............................................................................................................................2280.131100000
.................................................................................................................................................................................................................................TCCACAATCAACACATACGGCAT...................2380.131100000
..................................................TTGAAGTACATAGCATTTCCACTTC................................................................................................................................................................................................2580.131100000
...............................................................................................................AAAATTCCTCATCGACACAGGAGC....................................................................................................................................2480.131100000
.......................................................GTACATAGCATTTCCACTTCTAATCGTC........................................................................................................................................................................................2880.131100000
.................................................................................................................................................................................................................................TCCACAATCAACACATACGGCA....................2280.131100000
.......................................................................................................TCTGGTCGAAAATTCCTCATC...............................................................................................................................................2180.131000010
...........................................TT-AAGGTTGAAGTACATAGCA..........................................................................................................................................................................................................2180.131000010
.......................................................GTACATAGCATTTCCACTTCTAAT............................................................................................................................................................................................2490.111100000
.......................................................GTACATAGCATTTCCACTTCTA..............................................................................................................................................................................................2290.111000010
.......................................................GTACATAGCATTTCCACTTCTAATC...........................................................................................................................................................................................2590.111000010

Generated: 05/17/2015 at 11:40 PM