dan_920

intron [Dana\GF22846-in]; exon [dana_GLEANR_738:8]; CDS [Dana\GF22846-cds]; intron [Dana\GF22846-in]

--------##########################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CGTTTCAGGTTTCGGAAATGTGCGACCACTTCCACATTCGTTGCTTCAAAGTAAGACAGTCTAGTAGCCAAGCGGGCTCAGATTTAACTCACCAACTTCTGCAGAATAATAACAAAGTCAAACCCCAAAAAAGTCATTCCAACTAAATCGCCCACTAACCCAAACCACATCAACAAATCGGGGACTACAAAAACCAACCATCTTGTGATATATAGTATATATATAGAAATGGGTTCCAATACATTTGGCCT ************************************************.......((((.........((.((((...((((((........((((................................)))).........)))))))))).))..(((..................)))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	V106 head	V055 head
.................................................AGTAAGACAGTCTAGTAGC.......................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0
........................................................................................................................................................................................CTACAAGAACCATCCATCTT...............................................	20	2	1	1.00	1	0	1	0	0
.................................................................................................................................................................AAACCACATCAACAAACC........................................................................	18	1	1	1.00	1	1	0	0	0
.................................................AGAAAGACAGTATACTAGC.......................................................................................................................................................................................	19	3	6	0.17	1	1	0	0	0
...........................................................................................................................................................TAACCCAAACCACAACACC.............................................................................	19	2	9	0.11	1	1	0	0	0
..............................................................................................................................................................................................................................ATAGAAATGGGTTACAAC...........	18	2	11	0.09	1	0	1	0	0
..................................................................................................................AAGTCAAACCGCAAAAAAT......................................................................................................................	19	2	14	0.07	1	0	0	0	1
..............................................................................................................AACAAACTCAAACCACAAAA.........................................................................................................................	20	2	15	0.07	1	1	0	0	0
.........................................................................................................ATAATAGCAGGGTCAAACC...............................................................................................................................	19	3	16	0.06	1	0	1	0	0
...................................................................................................................AGTCAAACCTCAAAAATCTC....................................................................................................................	20	3	18	0.06	1	0	0	0	1
.........................................................................................................................................................ACTAACCCACACCACAAAAA..............................................................................	20	3	20	0.05	1	0	1	0	0
.......................................................................................................GAATAACAACAAAGGGAAACC...............................................................................................................................	21	3	20	0.05	1	1	0	0	0

GCAAAGTCCAAAGCCTTTACACGCTGGTGAAGGTGTAAGCAACGAAGTTTCATTCTGTCAGATCATCGGTTCGCCCGAGTCTAAATTGAGTGGTTGAAGACGTCTTATTATTGTTTCAGTTTGGGGTTTTTTCAGTAAGGTTGATTTAGCGGGTGATTGGGTTTGGTGTAGTTGTTTAGCCCCTGATGTTTTTGGTTGGTAGAACACTATATATCATATATATATCTTTACCCAAGGTTATGTAAACCGGA ************************************************.......((((.........((.((((...((((((........((((................................)))).........)))))))))).))..(((..................)))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	V106 head	M044 female body	V039 embryo	M058 embryo	V105 male body
...........................................................................................................................................................................................GTTCTTGGTTGGTTGAGCACTA..........................................	22	3	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................CCTGATGTTTTTGGTTGGTAG.................................................	21	0	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................ATCAGTAAGGTTGATGTCGCGG...................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................ATGTTGTTGGTTGGTATA................................................	18	2	9	0.22	2	0	0	0	2	0	0
..............................................................................................................................................GATTAATCGGGTGATAGGGT.........................................................................................	20	3	5	0.20	1	0	0	1	0	0	0
........................................................................GCTTGAGTCTAAATTGCGTGG..............................................................................................................................................................	21	3	8	0.13	1	0	0	1	0	0	0
.....................................................................................................................................AATGAGGTTGATTTAGCG....................................................................................................	18	2	9	0.11	1	0	0	0	0	1	0
.........................................................................................................................................................................................ATGTTTGTAGTTGGTAGA................................................	18	2	10	0.10	1	0	0	0	1	0	0
.........................................................................CTTGAGTCTAAATTGCGTGG..............................................................................................................................................................	20	3	11	0.09	1	0	0	0	0	0	1
......................................GCAACGAAGCTTAATTCGG..................................................................................................................................................................................................	19	3	15	0.07	1	0	1	0	0	0	0
...........................................................AGATCGTCAGTCCGCCCGA.............................................................................................................................................................................	19	3	18	0.06	1	0	0	1	0	0	0
............................................................................................................................................................................................TGTTAGGTTGGTGGAACAC............................................	19	3	20	0.05	1	0	0	0	1	0	0
..................................................................................AAAATGAGTGGGTGAAGAT......................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1
................................................................................CTAAATTGAGTAGTTGAGC........................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_12943:1519849-1520099 +	dan_920	C----------G-----------------------T-TT---------CAGGTTTCGGAAATGTGCGACCACTTCCACATTCGTTGCTTCAAAGTAAGACAGTCTAGTAGCCAAGCGGGCTCAGATTTA---ACTCACCAACTTCTGCAGAATAATAACAAAGTCAAACCCCAAAAAAGTCATTCCAACTAAATCGC-CCACTAACCCA-------------------AACCACAT---------------------CA---A-CAA-----------ATC--------------------------------------------------GGGG-ACTACAAA---AACC--------------AACCATCTT----GTGATATATAGTA----T----------ATATATAGAAATGGGT-----TCC-----------AAT--AC-----ATT--TGG------------CCT---------------------------
droBip1	scf7180000396728:1682201-1682451 -		G----------------------------------T-TA---------TAGGTTTCTGAAATGTGCGACCACTTCCACATTCGCTGCTTCAAAGTAAGACCGTCTAGTAGCCCAACCGGCTCAGACTTA---ACTCAACATCTTCTACAGAATAATAACAAAGTCAAACTCCCAAAAAGTCATTCAAACTAAATCGCCTAACTAACCCA-------------------AACCACAT---------------------CA---A-CAA-----------ATC--------------------------------------------------GGGG-ACTACAAA---AATC--------------AACCATCTT----GTGATATATAGTA----T----------ATATATAGAAATGGGT-----TCC-----------AAC--AC-----ATT--TGG------------CCT---------------------------
droKik1	scf7180000302570:270407-270685 +		-----------------------------------T-TG---------CAGGTCTCTGAGATGTGCGATCACTTCCACATTCGCTGCTTCAAAGTAAGATCGACTGGCAGCCAATCGGGCTCCGATTTA---ACTCAACAACTTCTACAGAACAATAACAAAATCAAACCGTTGAAAACCCATTGAAACTAAAACG------------A-------------------AATCACACCAACTAACATCAAAATCACATTC---AAA-AAACAAA--CAAAAC--------------------------------------------------GGGG-ACAACCAA---AATCTAAATCAAAATCAAAACCATCTT----GTGATATATAGTAGAAATAT--ATA--TATATATATAAATGGGT-----TCC-----------A-------------------------------------------------------------
droFic1	scf7180000454115:580601-580854 -		-----------------------------------T-TT---------TAGGTGTCCGAGATGTGCGACCACTTCCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGATGCAGATTTA---ACTCAACAGCTTCTCCAGAATAATAACAAAACCAAAACGTTGAAAAGCCATTGAAACTAAATCGC-CCACTAACCAA-------------------AATCACAT---------------------CA---A-ACA-----------AAC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TAT-T--A--TATATATATAAATGGGT-----TCC-----------AAA--AC-----ATT--TAG------------CCC---------------------------
droEle1	scf7180000491028:1238761-1239022 +		A----------T-----------------------T-TT---------TAGGTCTCTGAGATGTGCGACCACTTCCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAACCTGGTTCAGATTTA---ACTCAACAACTTCTACAAAATGATAATAACATCAAAACGTTGAAAAGCCATTGAAACTAAATCGC-CCACTAACCAA-------------------AATCACAT---------------------CAATCAAA-A-----------AAC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTT--AATATATA----CATATATATAAATGGGT-----TCC-----------AAA--AC-----ATT--TAG------------CCC---------------------------
droRho1	scf7180000780001:15663-15930 -		CTAATAATGAACCA--------------------TT-TT---------TAGGTCTCTGAGATGTGCGACCACTTTAAAATTCGGTGCTTCAAAGTAAGAAAATCTAGCAGCCAACCTGGTTCAGATTTA---ACTCAACAACTTCTACAGAATGATAACAAAATCAAAACGTTGAAAAGCCATTGAAACTAAATCGC-CCACTAACCAA-------------------AATCACAT---------------------CA---A-TCA-----------AAC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTT----TATA------TATATATATAAATGGGT-----TCC-----------AAA--AC-----ATT--TAG------------CCC---------------------------
droBia1	scf7180000302422:9525400-9525651 -		CT---------A----------------------TT-TT---------TAGGTATCGGAGATGTGCGACCACTTCCAGATTCGCTGCTTCAAAGTAAGAAAATCTAGTAGCCAATCGGGCTCAGATCCA---ACTCAAAAACTTCTACAGAACAATAACAAAATCAAAACGTTGAAAAGCCATTGAA-----ATCGC-CCACTAACCAA-------------------AATCACAT---------------------CA---A-A-------------AAC--------------------------------------------------GGGG-ACAAGCAA---AATC--------------AACCATCTT----GTGATATAAAGTA----TATATA----TATACATATAAATGGGT-----TCC-----------AAA--AC-----ATT--TAG------------CCC---------------------------
droTak1	scf7180000415702:633275-633555 +		C----------CCAACTAATTATATTATTATTTTTT-TT---------CAGGTATCGGAGATGTGCGACCACTTCAACATTCGCTGCTTCAAAGTAAGACAATCTAGCGGCCAATCGGTCTCAGATTCA---ACTCAACCACTTCTACAGAACAATAACAAATTCAAAACGTTGAAAAGCCATTGAA-----ATCGC-CCACTAACCAA-------------------AATCACAT---------------------CAAACA--AA-----------AAC--------------------------------------------------GGGG-ACAACCAAA--AATC--------------AACCATCTT----GTGATATAAAGTA----TATATATA--T-TATATATAAATGGGT-----TCC-----------AAAAAAC-----ATT--TAG------------CCC---------------------------
droEug1	scf7180000409463:963611-963879 +		C----------T-----------------------T-TT---------TAGGTCTCTGAGATGTGCGATCACTTCCACATTCGTTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAGACATA---ACTCAACAACTTCTACAGAACAATAACAAA------ACGTTGAAAAGTCATTGAAACTAAATCGC-CAACTAACCAA-------------------AATCACAT---------------------CAAACAA--A-ACAAAAAAAAAAC--------------------------------------------------GGGGAACAACCAAA--AATC--------------AACCATCTT----GTGATATATAGTA----TATATACATATATATATATAAATGGGT-----TCC-----------AAA--AC-----ATT--TAG------------CCC---------------------------
dm3	chr2L:7786783-7787038 -		C----------------------------------T-TT---------TAGGTTTCTGAGATGTGCGACCACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAGATATA---ACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGTTGAAAAGCCATTGAAACTAAATCGC-TCACTAACAAA-------------------AATCACAT---------------------CA---A-A-A-----------ACC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TATATACA--TATATATATAAATGGGT-----TCC-----------AA---AC-----ATT--TAG------------CCC---------------------------
droSim2	2l:7532762-7533017 -	dsi_7960	C----------------------------------T-TT---------TAGGTTTCTGAGATGTGCGACCACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAGATATA---ACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGTTGAAAAGCCATTGAAACTAAATCGC-TCACTAACAAA-------------------AATCACAT---------------------CA---A-A-A-----------ACC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TATATACA--TATATATATAAATGGGT-----TCC-----------AA---AC-----ATT--TAG------------CCC---------------------------
droSec2	scaffold_3:3301162-3301418 -		C----------C-----------------------T-TC---------TAGGTTTCTGAGATGTGCGACCACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAGATATA---ACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGTTGAAAAGCCATTGAAACTAAATCGC-TCACTAACAAA-------------------AATCACAT---------------------CA---A-A-A-----------ACC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TATATACA--TATATATATAAATGGGT-----TCC-----------AA---AC-----ATT--TAG------------CCC---------------------------
droYak3	2L:5114303-5114560 +		-----------------------------------T-TG---------TAGGTTTCTGAGATGTGCGACCACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAGATATA---ACTCAACCACTTCTGCAGAATAATAACAAAATCAAACCGTTGAAAAGCCATTGAAACTAAATCGC-TCACTAACAAA-------------------AATCACAT---------------------CA---A-AAA-----------ACC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TATATACATATATATATATAAATGGGT-----TCC-----------AA---AC-----ATT--TAG------------CCC---------------------------
droEre2	scaffold_4929:16707800-16708052 -		T----------A-----------------------T-TT---------TAGGTTTCTGAGATGTGCGACCACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAAATATA---ACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGTTGAAAAGCCATTGAAACTAAATCGC-TCACTAACAAA-------------------AATCACAT---------------------CA---A-A-A-----------ACC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TATA------TATATATATAAATGGGT-----TCC-----------AA---AC-----ATT--TAG------------CCC---------------------------
dp5	4_group3:1673394-1673678 -		C----------------------------------T-TC---------TAGGTCTCTGAAATGTGCAATCACTTCCATATCAGATGCTTCAAAGTAAGACAAACTCGCAGCCAAACGG---CAGATCCACAATCACAACAATCCCTGCAGAATAATAACAAAATCA---------AGGGCCATTGAAACTAATTCGC-TCACTAACACC---CCCGCCCCCAA--AGAAACATCAT---------------------CA---A-CGA-----------CAA--------------------------------------------------GGCC-ACAAACAAATCAACC--------------AACCATCTT----GTGATATATA---------TA------TATATATTTATATGGGGATCGATCCGAAAAAACAAAAAA--AC-----ATT--TAACTTTATACCTCGCCA---------------------------
droPer2	scaffold_1:3144544-3144830 -		C----------------------------------T-TC---------TAGGTCTCTGAAATGTGCAATCACTTCCATATCAGATGCTTCAAAGTAAGACAAACTCGCAGCCAAATGG---CAGATCCACAATCACAACAATCCCTGCAGAATAATAACAAAATCA---------AGGGCCATTGAAACTAATTCGC-TCACTAACACC---CCCGCTCCCAA--AGAAACATCAT---------------------CA---A-CGA-----------CAA--------------------------------------------------GGCC-ACAAACAAATCAACC--------------AACCATCTT----GTGATATATA-------TATA------TATATATTTATATGGGGATCGATCCGAAAAAACAAAAAA--AC-----ATT--TAACTTTATACCTCGCCA---------------------------
droWil2	scf2_1100000004521:5744764-5745020 +		T----------A-----------------------TTGA---------CAGGTGTCCGAAATGTGCAATCATTTTCATATTAAATGCTTCAAAGTAAGAACACCAAGTAGCCAAACGG---CAGAGTTA------------CTACAACAAAATAATAACAAATT---------CAAAAGCCATTGAAAG-----AGC-TAAAAAA---A-------------------AACAACAA----------CAAAACATTATTA---A-A-A-----------AAA--------------------------------------------GA----AAAG-AAAACT-----AACT--------------AACAATTTT----GTGATACACATT--------------------------ATGGGA--------------------AA--AC-----ATTAATAACTCT-TACCTCGCCACACCCACCCACCCACCACCATCTGAGC
droVir3	scaffold_12963:6586732-6586993 +	dvi_10689	A----------A-----------------------T-TG---------CAGGTCTCGGAAATGTGTAATCATTTTAAGATTCGTTGCTTCAAAGTAAGAAAATCCCACAGCAATTCCGTTGAAT----------ACA-CTAC-ATTCCAGAACAATAACAAA------TCCCAGAAAAGTCATTGAAACTAA-TTAC-ATACTAACTAGAA-----------------AAAAAAAA---------------------CA------AA-----------AACAAAAACAATCAAAACAAAACAAATTCAACGAAATA-CGAAAATACC-----------AAAA-----GGGT--------------TGCCATTTTGTATGTGATATAAA---------------------------TGTGGGT-----GTT-----------ACA--AA------AT--TCT------------CTT---------------------------
droMoj3	scaffold_6500:25743099-25743358 +		T----------A-----------------------T-CTTCTATCCAATAGGTCTCGGAAATGTGTGACCACTTCAAGATTCGTTGCTTCAAAGTAAGAAAATATGACAGCAATTTCGTTGAACATA---------------CATTCCAGAAGAATAACAAAT------TCCTGAAAAGTCATTGAAACTAATTACA-TAACTAACTTCAACAA-----------A--GAACAAAT------------------TT-CA---A-CAA-----------AAA----------------------------------GATTAAGCAACCGATTGGTT-GCAAAT-----GGTT--------------GGCCATTTTGTATGTGATATAAA---------------------TGT-----TGGGT-----GTT-----------ACA--AAATTCAATT--TCG------------C-C---------------------------
droGri2	scaffold_15252:9801178-9801439 +		C----------G-----------------------T-CT---CTCCAATAGGTCTCGGAAATGTGTAATCATTTTAATATCAGTTGCTTCAAAGTAAGAAAATCTCGCAGCAATA-----------------------CCAC-ATTCCAGAAAAATAACAAA------TCGTTGAAAAGCCATTGAAACTAA-TTAC-ATACTAACTACAACCAAGAAACCAACCAGAACCAAAAT---------------------CA---A-CGA-----------AAT----------------------------------AATCAAAAAACCAA---------AAAG-----GGGT--------------GTCCATTTGCTATGTGATATATA---------------------TAT---TGTGGGT-----GTT-----------ACA--AAATTCCCTT--TCG-------CCTCGCCTCGCC-----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

C----------G-----------------------T-TT---------CAGGTTTCGGAAATGTGCGACCACTTCCACATTCGTTGCTTCAAAGTAAGACAGTCTAGTAGCCAAGCGGGCTCAGATTTA---ACTCACCAACTTCTGCAGAATAATAACAAAGTCAAACCCCAAAAAAGTCATTCCAACTAAATCGC-CCACTAACCCA-------------------AACCACAT---------------------CA---A-CAA-----------ATC--------------------------------------------------GGGG-ACTACAAA---AACC--------------AACCATCTT----GTGATATATAGTA----T----------ATATATAGAAATGGGT-----TCC-----------AAT--AC-----ATT--TGG------------CCT---------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................AGTAAGACAGTCTAGTAGC........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1

droBip1

G----------------------------------T-TA---------TAGGTTTCTGAAATGTGCGACCACTTCCACATTCGCTGCTTCAAAGTAAGACCGTCTAGTAGCCCAACCGGCTCAGACTTA---ACTCAACATCTTCTACAGAATAATAACAAAGTCAAACTCCCAAAAAGTCATTCAAACTAAATCGCCTAACTAACCCA-------------------AACCACAT---------------------CA---A-CAA-----------ATC--------------------------------------------------GGGG-ACTACAAA---AATC--------------AACCATCTT----GTGATATATAGTA----T----------ATATATAGAAATGGGT-----TCC-----------AAC--AC-----ATT--TGG------------CCT---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-----------------------------------T-TG---------CAGGTCTCTGAGATGTGCGATCACTTCCACATTCGCTGCTTCAAAGTAAGATCGACTGGCAGCCAATCGGGCTCCGATTTA---ACTCAACAACTTCTACAGAACAATAACAAAATCAAACCGTTGAAAACCCATTGAAACTAAAACG------------A-------------------AATCACACCAACTAACATCAAAATCACATTC---AAA-AAACAAA--CAAAAC--------------------------------------------------GGGG-ACAACCAA---AATCTAAATCAAAATCAAAACCATCTT----GTGATATATAGTAGAAATAT--ATA--TATATATATAAATGGGT-----TCC-----------A-------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------------------------------T-TT---------TAGGTGTCCGAGATGTGCGACCACTTCCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGATGCAGATTTA---ACTCAACAGCTTCTCCAGAATAATAACAAAACCAAAACGTTGAAAAGCCATTGAAACTAAATCGC-CCACTAACCAA-------------------AATCACAT---------------------CA---A-ACA-----------AAC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TAT-T--A--TATATATATAAATGGGT-----TCC-----------AAA--AC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A----------T-----------------------T-TT---------TAGGTCTCTGAGATGTGCGACCACTTCCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAACCTGGTTCAGATTTA---ACTCAACAACTTCTACAAAATGATAATAACATCAAAACGTTGAAAAGCCATTGAAACTAAATCGC-CCACTAACCAA-------------------AATCACAT---------------------CAATCAAA-A-----------AAC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTT--AATATATA----CATATATATAAATGGGT-----TCC-----------AAA--AC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTAATAATGAACCA--------------------TT-TT---------TAGGTCTCTGAGATGTGCGACCACTTTAAAATTCGGTGCTTCAAAGTAAGAAAATCTAGCAGCCAACCTGGTTCAGATTTA---ACTCAACAACTTCTACAGAATGATAACAAAATCAAAACGTTGAAAAGCCATTGAAACTAAATCGC-CCACTAACCAA-------------------AATCACAT---------------------CA---A-TCA-----------AAC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTT----TATA------TATATATATAAATGGGT-----TCC-----------AAA--AC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CT---------A----------------------TT-TT---------TAGGTATCGGAGATGTGCGACCACTTCCAGATTCGCTGCTTCAAAGTAAGAAAATCTAGTAGCCAATCGGGCTCAGATCCA---ACTCAAAAACTTCTACAGAACAATAACAAAATCAAAACGTTGAAAAGCCATTGAA-----ATCGC-CCACTAACCAA-------------------AATCACAT---------------------CA---A-A-------------AAC--------------------------------------------------GGGG-ACAAGCAA---AATC--------------AACCATCTT----GTGATATAAAGTA----TATATA----TATACATATAAATGGGT-----TCC-----------AAA--AC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C----------CCAACTAATTATATTATTATTTTTT-TT---------CAGGTATCGGAGATGTGCGACCACTTCAACATTCGCTGCTTCAAAGTAAGACAATCTAGCGGCCAATCGGTCTCAGATTCA---ACTCAACCACTTCTACAGAACAATAACAAATTCAAAACGTTGAAAAGCCATTGAA-----ATCGC-CCACTAACCAA-------------------AATCACAT---------------------CAAACA--AA-----------AAC--------------------------------------------------GGGG-ACAACCAAA--AATC--------------AACCATCTT----GTGATATAAAGTA----TATATATA--T-TATATATAAATGGGT-----TCC-----------AAAAAAC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

C----------T-----------------------T-TT---------TAGGTCTCTGAGATGTGCGATCACTTCCACATTCGTTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAGACATA---ACTCAACAACTTCTACAGAACAATAACAAA------ACGTTGAAAAGTCATTGAAACTAAATCGC-CAACTAACCAA-------------------AATCACAT---------------------CAAACAA--A-ACAAAAAAAAAAC--------------------------------------------------GGGGAACAACCAAA--AATC--------------AACCATCTT----GTGATATATAGTA----TATATACATATATATATATAAATGGGT-----TCC-----------AAA--AC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

C----------------------------------T-TT---------TAGGTTTCTGAGATGTGCGACCACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAGATATA---ACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGTTGAAAAGCCATTGAAACTAAATCGC-TCACTAACAAA-------------------AATCACAT---------------------CA---A-A-A-----------ACC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TATATACA--TATATATATAAATGGGT-----TCC-----------AA---AC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................TCTAGCAGCCAATCGGGTTCAGATA........................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................A---ACTCAACCACTTCTGCAGAAC..............................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................ACTTCTGCAGAACAATAAC........................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AACAATAACAAAATCAAACCGTTGT........................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TA---ACTCAACCACTTCTGCAGAAC..............................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................TCTGAGATGTGCGACCACTTTCACA........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................CATTGAAACTAAATCGC-TCACTAACAA.......................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................CCACTTTCACATTCGCTGC................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................ACA--TATATATATAAATGGGT-----TCC-----------..............................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTCTGCAGAACAATAACAAAAT...................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................G-ACAACCAA---AATC--------------AACCATCTT----GTGA.........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CAATCGGGTTCAGATATA---A..................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TGCGACCACTTTCACATTCGCTGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GCCAATCGGGTTCAGATATA---ACTCAAC............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................ATCTT----GTGATATATAGTA----TT..........................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

C----------------------------------T-TT---------TAGGTTTCTGAGATGTGCGACCACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAGATATA---ACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGTTGAAAAGCCATTGAAACTAAATCGC-TCACTAACAAA-------------------AATCACAT---------------------CA---A-A-A-----------ACC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TATATACA--TATATATATAAATGGGT-----TCC-----------AA---AC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................GATATA---ACTCAACCACTTCTGCAGAAC..............................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GTAAGAAAATCTAGCAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ATA---ACTCAACCACTTCTGCAGAAC..............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................ATCTAGCAGCCAATCGGGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CGCTGCTTCAAAGTAAGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................TCAAAGTAAGAAAATCTAGCAGCCAA.....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................GGTTTCTGAGATGTGCGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AATCACAT---------------------CA---A-A-A-----------ACC--------------------------------------------------GG..........................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TTCACATTCGCTGCTTCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................CAAAGTAAGAAAATCTAGCAGCCAAT....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTTCTGAGATGTGCGACCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................ACTTCTGCAGAACAATAACA.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................AATCTAGCAGCCAATCGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GCCAATCGGGTTCAGATATA---ACTC...............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TTCACATTCGCTGCTTCAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GG-ACAACCAA---AATC--------------AACCATCTT----GTGAT........................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GCAGAACAATAACAAAATCAAACC.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CAACCAA---AATC--------------AACCATCTT----GT...........................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TATA---ACTCAACCACTTCTGCAGAACA.............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

C----------C-----------------------T-TC---------TAGGTTTCTGAGATGTGCGACCACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAGATATA---ACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGTTGAAAAGCCATTGAAACTAAATCGC-TCACTAACAAA-------------------AATCACAT---------------------CA---A-A-A-----------ACC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TATATACA--TATATATATAAATGGGT-----TCC-----------AA---AC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................TGAAAAGCCATTGAAACTAAAT.....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..................................................................GACCACTTTCACATTCGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................ATC--------------AACCATCTT----GTGATATATAGT.................................................................................................................	24	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................AACTAAATCGC-TCACTAAC.........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..............................................................................ATTCGCTGCTTCAAAGTAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................AACCAA---AATC--------------AACCATCTT----G............................................................................................................................	20	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AACCAA---AATC--------------AACCATCTT----GT...........................................................................................................................	21	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................CAACCAA---AATC--------------AACCATCTT----.............................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

-----------------------------------T-TG---------TAGGTTTCTGAGATGTGCGACCACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAGATATA---ACTCAACCACTTCTGCAGAATAATAACAAAATCAAACCGTTGAAAAGCCATTGAAACTAAATCGC-TCACTAACAAA-------------------AATCACAT---------------------CA---A-AAA-----------ACC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TATATACATATATATATATAAATGGGT-----TCC-----------AA---AC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................TTCAAAGTAAGAAAATCTAGCAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................GTAAGAAAATCTAGCAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GCCAATCGGGTTCAGATATA---ACT................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

T----------A-----------------------T-TT---------TAGGTTTCTGAGATGTGCGACCACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTCAAATATA---ACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGTTGAAAAGCCATTGAAACTAAATCGC-TCACTAACAAA-------------------AATCACAT---------------------CA---A-A-A-----------ACC--------------------------------------------------GGGG-ACAACCAA---AATC--------------AACCATCTT----GTGATATATAGTA----TATA------TATATATATAAATGGGT-----TCC-----------AA---AC-----ATT--TAG------------CCC---------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................AAA-------------------AATCACAT---------------------CA---A-A-A-----------ACC--------------------------------------------------GG..........................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................ATCAAACCGTTGAAAAGCCATTGA.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................AACAATAACAAAATCAAACCGT...........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0

dp5

C----------------------------------T-TC---------TAGGTCTCTGAAATGTGCAATCACTTCCATATCAGATGCTTCAAAGTAAGACAAACTCGCAGCCAAACGG---CAGATCCACAATCACAACAATCCCTGCAGAATAATAACAAAATCA---------AGGGCCATTGAAACTAATTCGC-TCACTAACACC---CCCGCCCCCAA--AGAAACATCAT---------------------CA---A-CGA-----------CAA--------------------------------------------------GGCC-ACAAACAAATCAACC--------------AACCATCTT----GTGATATATA---------TA------TATATATTTATATGGGGATCGATCCGAAAAAACAAAAAA--AC-----ATT--TAACTTTATACCTCGCCA---------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................CATCAT---------------------CA---A-CGA-----------CAA--------------------------------------------------GGCC-AC.....................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CATTGAAACTAATTCGC-TCAC.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................GCAGAATAATAACAAAATCA---------AGGGC...................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................TCA---------AGGGCCATTGAAACTA........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AAACATCAT---------------------CA---A-CGA-----------CAA--------------------------------------------------GGC.........................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTTATATGGGGATCGATCCGAAA.....................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

C----------------------------------T-TC---------TAGGTCTCTGAAATGTGCAATCACTTCCATATCAGATGCTTCAAAGTAAGACAAACTCGCAGCCAAATGG---CAGATCCACAATCACAACAATCCCTGCAGAATAATAACAAAATCA---------AGGGCCATTGAAACTAATTCGC-TCACTAACACC---CCCGCTCCCAA--AGAAACATCAT---------------------CA---A-CGA-----------CAA--------------------------------------------------GGCC-ACAAACAAATCAACC--------------AACCATCTT----GTGATATATA-------TATA------TATATATTTATATGGGGATCGATCCGAAAAAACAAAAAA--AC-----ATT--TAACTTTATACCTCGCCA---------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................AATAACAAAATCA---------AGGGCC..................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	5	0	0	0	0	0
....................................................................................................................................................AGAATAATAACAAAATCA---------AGGGC...................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................CCACAATCACAACAATCCCTGCAGA................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0

droWil2

T----------A-----------------------TTGA---------CAGGTGTCCGAAATGTGCAATCATTTTCATATTAAATGCTTCAAAGTAAGAACACCAAGTAGCCAAACGG---CAGAGTTA------------CTACAACAAAATAATAACAAATT---------CAAAAGCCATTGAAAG-----AGC-TAAAAAA---A-------------------AACAACAA----------CAAAACATTATTA---A-A-A-----------AAA--------------------------------------------GA----AAAG-AAAACT-----AACT--------------AACAATTTT----GTGATACACATT--------------------------ATGGGA--------------------AA--AC-----ATTAATAACTCT-TACCTCGCCACACCCACCCACCCACCACCATCTGAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................AGAGTTA------------CTACAACAAAATAATAAC........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................TGATACACATT--------------------------ATGGGA--------------------AA--AC-----ATTAAT............................................	27	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................T---------CAAAAGCCATTGAAAG-----AGC-.................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................CATT--------------------------ATGGGA--------------------AA--AC-----ATTAAT............................................	20	1	1.00	1	0	0	1	0	0

droVir3

A----------A-----------------------T-TG---------CAGGTCTCGGAAATGTGTAATCATTTTAAGATTCGTTGCTTCAAAGTAAGAAAATCCCACAGCAATTCCGTTGAAT----------ACA-CTAC-ATTCCAGAACAATAACAAA------TCCCAGAAAAGTCATTGAAACTAA-TTAC-ATACTAACTAGAA-----------------AAAAAAAA---------------------CA------AA-----------AACAAAAACAATCAAAACAAAACAAATTCAACGAAATA-CGAAAATACC-----------AAAA-----GGGT--------------TGCCATTTTGTATGTGATATAAA---------------------------TGTGGGT-----GTT-----------ACA--AA------AT--TCT------------CTT---------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................AAT----------ACA-CTAC-ATTCCAGAACA.............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................ATAACAAA------TCCCAGAAAAGTCATTGA.............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AATCATTTTAAGATTCGTTGCTTCAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T----------A-----------------------T-CTTCTATCCAATAGGTCTCGGAAATGTGTGACCACTTCAAGATTCGTTGCTTCAAAGTAAGAAAATATGACAGCAATTTCGTTGAACATA---------------CATTCCAGAAGAATAACAAAT------TCCTGAAAAGTCATTGAAACTAATTACA-TAACTAACTTCAACAA-----------A--GAACAAAT------------------TT-CA---A-CAA-----------AAA----------------------------------GATTAAGCAACCGATTGGTT-GCAAAT-----GGTT--------------GGCCATTTTGTATGTGATATAAA---------------------TGT-----TGGGT-----GTT-----------ACA--AAATTCAATT--TCG------------C-C---------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................T------------------TT-CA---A-CAA-----------AAA----------------------------------GATTAAGCAAC.................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................TCTCGGAAATGTGTGACCACTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
................................................................GTGACCACTTCAAGATTCGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.....................................................CTCGGAAATGTGTGACCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................GACCACTTCAAGATTCGTTGCTTCAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0

droGri2

C----------G-----------------------T-CT---CTCCAATAGGTCTCGGAAATGTGTAATCATTTTAATATCAGTTGCTTCAAAGTAAGAAAATCTCGCAGCAATA-----------------------CCAC-ATTCCAGAAAAATAACAAA------TCGTTGAAAAGCCATTGAAACTAA-TTAC-ATACTAACTACAACCAAGAAACCAACCAGAACCAAAAT---------------------CA---A-CGA-----------AAT----------------------------------AATCAAAAAACCAA---------AAAG-----GGGT--------------GTCCATTTGCTATGTGATATATA---------------------TAT---TGTGGGT-----GTT-----------ACA--AAATTCCCTT--TCG-------CCTCGCCTCGCC-----------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_920

scaffold_12943:1519899-1520049 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads