ID:

dan_903

 Coordinate:

scaffold_12943:970278-970428 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.4 -11.4 -11.4

Flybase annnotation

exon [dana_GLEANR_594:3]; CDS [Dana\GF21940-cds]; intron [Dana\GF21940-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTAGCGATTGCGTTTTTTGAATTCACAAATCAAATTGGCGTGTTACCAACAGTGATGGAACTTTAGATAATCAGTGTTGCATTGCGATTAAGGAAGTGAAAAGCGTTGCCTTTTTTTTTTTAAATCGAAAAAGAATCGCGATAAATTTGCAAAGTCCACATATTATTATTTATTATTTATTATTTTTTCGTCGCTCCAGTCTCAAAGCGTAAGAGTGACTGGAGCGACACATCCAACACCAGCTCCGGC
************************************************************************************.........(((.....(((..(((((..(((((((((......)))))))))..)))))...)))......))).................*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V039
embryo
 V055
head
 V106
head
....................................TTGGCGTGTTACCAACAGTGATGGAAC............................................................................................................................................................................................ 27 0 1 7.00 7 6 0 1 0 0 0
...................TGAATTCACAAATCAAATTGGCGTG............................................................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0
....................................................................................TGCGATTAAGGAAGTGAAAAGCGTTGCC........................................................................................................................................... 28 0 1 3.00 3 2 1 0 0 0 0
....................................................................................................................................................................................................TCCAGTCTCAAAGCGTAAGAGTGAC.............................. 25 0 1 2.00 2 2 0 0 0 0 0
........................................................................TCAGTGTTGCATTGCGATTAAGGAAG......................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
.................................................................................CATTGCGATTAAGGAAGTGAAAAGC................................................................................................................................................. 25 0 1 2.00 2 0 2 0 0 0 0
.....................................TGGCGTGTTACCAACAGTGATGGAAC............................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0
.................................................................TAGATAATCAGTGTTGCATTGCGAT................................................................................................................................................................. 25 0 1 2.00 2 0 1 1 0 0 0
...............................................................................................................................................................................................................AGCGTAAGAGTGACTGGAGCGACACATC................ 28 0 1 2.00 2 0 2 0 0 0 0
...................TGAATTCACAAATCAAATTGGCGTGT.............................................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
.................TTTGAATTCACAAATCAAATTGGCGT................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................GATGGAACTTTAGATAATCAGTGTTG.......................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................................................................................GCGTAAGAGTGACTGGAGCGACACATC................ 27 0 1 1.00 1 1 0 0 0 0 0
....................................TTGGCGTGTTACCAACAGTGATGGAA............................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0
...................TGAATTCACAAATCAAATTGGCGTT............................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................TGACTGGAGCGACACATCCAACACC......... 25 0 1 1.00 1 0 1 0 0 0 0
........................................................................TCAGTGTTGCATTGCGATTAAGGAA.......................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...................TTAATTCACAAATCAAATTGGCGTGT.............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
...................................................................GATAATCAGTGTTGCATTGCGA.................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................TGTATTATTTTTTCGTCGCTCCAGTC................................................ 26 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................AGCGGAAGAGTGACTGGAGCGACACATC................ 28 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTATTTTTTCGTCGCTCCAGTCTCAAAGC......................................... 29 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................CAAAGCGTAAGAGTGACTGGAGC........................ 23 0 1 1.00 1 1 0 0 0 0 0
....................................TTGGCGTGTTACCAACAGTGA.................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
................................................................TTAGATAATCAGTGTTGCATTGCGA.................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................................................................................................TATTATTTGTTCGTCGCTCC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
........................................................................TCAGTGTTGCATTGCGATTAAGGA........................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
........................................................................TCAGTGTTGCATTGCGATTAAGG............................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0
.............................................TACCAACAGTGATGGAACTTTAGATA.................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................GAAGTGAAAAGCGTTGCCTTTTTTTT................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................................................................TTTATTATTTTTTCGTCGCTCCAGTCTCA............................................. 29 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................TATTTTTTCGTCGCTCCAGTC................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..................TGGAATTCACAAATCAAATTGGCG................................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................GATTAAGGAAGTGAAAAGCGT............................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................TATTTTTTCGTCGCTCCAGTCTCAAAG.......................................... 27 0 1 1.00 1 0 1 0 0 0 0
.........................................................................CAGTGTTGCATTGCGATTAAGGAAG......................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.....................AATTCACAAATCAAATTGGCGTGTT............................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................TAAGAGTGACTGGAGCGACACATCCAA............. 27 0 1 1.00 1 0 0 0 1 0 0
............................................................AACTTTAGATAATCAGTGTTGCATTG..................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................TAAGGAAGTGAAAAGCGTTGCC........................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................GTAAGAGTGACTGGAGCGACACATCCAAC............ 29 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................................AAAGCGTAAGAGTGACTGGAGCG....................... 23 0 1 1.00 1 0 0 0 1 0 0
.....................................TGGCGTGTTACCAACAGTGATGGAA............................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................................................................................................................TTATTTTTTCGTCGCTCCAGTCTCAAA........................................... 27 0 1 1.00 1 0 1 0 0 0 0
.....................................................................TAATCAGTGTTGCATTGCGATTAAG............................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................TAAGAGTGGCTGGAGCGACACATCCAA............. 27 1 1 1.00 1 0 1 0 0 0 0
................................................................TTAGATAATCAGTGTTGCATTGCGAT................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................TAAGAGTGACTGGAGCGACACATCCAAC............ 28 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................CAAAGTCCACATATTATTATTTATT........................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.................TGTGAATTCACAAATCAAATTGGCGT................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
...............................................................................TGCATTGCGATTAGGGAAGTGAAAAG.................................................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0
............................................................................TTTTGCATTGCGATTAAGGTAGTGA...................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TCAAAGCGTAAGAGTGACTGGAGC........................ 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................TTTTTCGTCGCTCCAGTCTCAAAGCG........................................ 26 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................TCGTCGCTCCAGTCTCAAAG.......................................... 20 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................TAAGAGTGACTGGAGCGACACATC................ 24 0 1 1.00 1 1 0 0 0 0 0
..................TTGAATTCACAAATCAAATTGGC.................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0
....................GAATTCACAAATCAAATTGGCC................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................TAAGAGTGACTGGAGCGACACATCC............... 25 0 1 1.00 1 1 0 0 0 0 0
...................TTAATTCACAAATCAAATTGGCGTGC.............................................................................................................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................TTACTGGAGCGACACATCCAACACC......... 25 1 1 1.00 1 1 0 0 0 0 0
....................................TGCGCGTGTTACCAACAGTGATGGAAC............................................................................................................................................................................................ 27 2 1 1.00 1 1 0 0 0 0 0
.........................................................TGGAACTTTAGATAATCAGTGTTGCATT...................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...................TGATTTCACAAATCAAATTGGCGTG............................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
....................................TTGGCGTGTTACCAACAGTGATGGA.............................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0
......................................................................................................................................................................................TATTTTTTCGTCGCTCCAGTCTCAAA........................................... 26 0 1 1.00 1 0 1 0 0 0 0
.................................................................TAGATAATCAGTGTTGCATTGCGAC................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
...................TGAATTCACAAATCAAATTGGCGT................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
..............TTTTTTGAATTCACAAATCAAATTGGC.................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
.................................................AACAGTGATGGAACTTTAGATAATCAG............................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0
.......................TTCACAAATCAAATTGGCGTGTTAC........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...................TGAATTCACAAATCAAATTGGCGTGC.............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AAGGAAGTGAAAAGCGTTGCCTTTTTT..................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................................CATCCAACACCAGCTCCGG. 19 0 1 1.00 1 0 1 0 0 0 0
...................................................................................TTGAGATTAAGGCAGTGAAA.................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................TATTTTTTCGTCGCTCCAGTCTCAAAGC......................................... 28 0 1 1.00 1 0 1 0 0 0 0
............................................................................TGTTGCATTGCGATTAAGGAAGT........................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................TATTATTTTTTCGTCGCTCCAGTCTC.............................................. 26 0 1 1.00 1 1 0 0 0 0 0
............................................................................TGTTGCATTGCGATTAAGGAAGTGA...................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................TTTTTTCGTCGCTCCAGTCTCAAAGC......................................... 26 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................................CATCCAACACCAGCTCCGGC 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................TAGATAATCAGTGTTGCATTGCGA.................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0
......................................................TTATGGAACTTTAGATAATCAGTGTT........................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................AAAGAGTAAGCGTGACAGGAG......................... 21 3 6 0.17 1 0 0 0 0 1 0
..........................................................................................................................................................................TTTACTATTTATTTTTTTTTCGTCA........................................................ 25 3 6 0.17 1 0 0 1 0 0 0
.................................................................................................................................................................................................................CGTAAGAGTGTCTTAAGCGA...................... 20 3 6 0.17 1 0 0 0 0 1 0
.......................................................................................................................................................................................................................AGTGACTGGAGCCACACCCCC............... 21 3 8 0.13 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................ACTGCAGCGACGCATCGAAC............ 20 3 8 0.13 1 0 1 0 0 0 0
........................................................................................................................................................................................................................TTGGCTGGGGCGACACATC................ 19 3 20 0.10 2 0 1 0 0 0 1
..........................................................................................................................................................................................................................GACTGGGGCGGCACATCC............... 18 2 20 0.10 2 0 0 0 1 1 0
..................................................................................AATGCGATTAAGGACGTG....................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 1
.........................................................................................................................TTAAATCGAACGAGAATCAC.............................................................................................................. 20 3 11 0.09 1 0 0 0 1 0 0
.................TTTGAATTCACATATCACTTT..................................................................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 1 0 0
.................................................................................................................................................................................................................AGTAAGACTGACTCGAGCG....................... 19 3 12 0.08 1 0 0 0 0 1 0
.............................................................................................................................................................................................................AACGCGTAAGAGCGACTA............................ 18 3 20 0.05 1 0 0 0 0 1 0
..............................................................................................................................................................................................................................CGAGCGAAACACCCAACAC.......... 19 3 20 0.05 1 1 0 0 0 0 0
...........................AAAATCCAATTCGCGTGTTA............................................................................................................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

AAAATCGCTAACGCAAAAAACTTAAGTGTTTAGTTTAACCGCACAATGGTTGTCACTACCTTGAAATCTATTAGTCACAACGTAACGCTAATTCCTTCACTTTTCGCAACGGAAAAAAAAAAATTTAGCTTTTTCTTAGCGCTATTTAAACGTTTCAGGTGTATAATAATAAATAATAAATAATAAAAAAGCAGCGAGGTCAGAGTTTCGCATTCTCACTGACCTCGCTGTGTAGGTTGTGGTCGAGGCCG
***************************************************************************.........(((.....(((..(((((..(((((((((......)))))))))..)))))...)))......))).................************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V106
head
 V105
male body		 V039
embryo
 V055
head
......................................................................................................................................CTTAGCGCTATTTAAACGTTTCAGGTG.......................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0
........................................................................................................................................TAGCGCTATTTAAACGTTTCAGGTG.......................................................................................... 25 0 1 2.00 2 1 0 1 0 0 0
..............................................................................................CTTCAGTCTTCGCAACGGTAA........................................................................................................................................ 21 3 2 2.00 4 4 0 0 0 0 0
................................................GTTGTCACTACCTTGAAATCTATTAGT................................................................................................................................................................................ 27 0 1 2.00 2 1 0 1 0 0 0
........................................................TACCTTGAAATCTATTAGTCACAACG......................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0
................................................GTTGTCACTACCTTGAAATCTATTAG................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
...............................................GGTTGTCACTACCTTGAAATCTATTAGT................................................................................................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0
.......................................................................TAGTCACAACGTAACGCTAATTCCTTCA........................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................TTCTTAGCGCTATTTAAACGTTTCAGGTG.......................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
...........................................................................CACAACGTAACGCTAATTCCTTCACTTTT................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.............................................................TGAAATCTATTAGTCACAACGTAACCCT.................................................................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................CTTCAGTCTTCGCAACGGTAAA....................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................................................TAACGCTAATTCCTTCACTTTTCGCA............................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................CTACCTTGAAATCTATTAGTCACA............................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................CCTTGAAATCTATAAGTC............................................................................................................................................................................... 18 1 2 1.00 2 0 0 2 0 0 0
..........................................................................TCACAACGTAACGCTAATTCCTTCAC....................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................CAGAGTTTCGCATTCTCACTGACCT.......................... 25 0 1 1.00 1 0 1 0 0 0 0
...........................................................................CACAACGTAACGCTAATTCCTTCACT...................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
..........................................................................TCACAACGTAACGCTAATTCCTTCA........................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................AGCGCTATTTAAACGTTTCAGGTG.......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................CTAGCGCTATTTAAACGTTTCAGGTG.......................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TCACAACGTAACGCTAATTCCTTCACTTT.................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................TTAGCGCTATTTAAACGTTTCAGGTG.......................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................CTTAGCGCTATTTAAACGGTTCAGGTG.......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
......................TAAGTGTTTAGTTTAACCGCACAAT............................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
.......................................................................TAGTCACAACGTAACGCTAATTCCT........................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................CACAATGGTTGTCACTACCTTGAAAT........................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0
....................................................................................ACGCTAATTCCTTCACTTTTCGCA............................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...............................................GGTTGTCACTACCTTGAAATCTATGAGT................................................................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................TTTTTCTTAGCGCTATTTAAACGTTT................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..........................................................CCTTGAAATCTATTAGTCACAACC......................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.......................................CGCACAATGGTTGTCACTACCTTGAAAT........................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
.................................................................................GTAACGCTAATTCCTTCACTTTT................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................CTCACTGACCTCGCTGTGTAGGTTGT........... 26 0 1 1.00 1 1 0 0 0 0 0
.....................TTAAGTGTTTAGTTTAACCGCACAATG........................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
..........................................................................CCACAACGTAACGCTAATTCCTTCACGT..................................................................................................................................................... 28 2 1 1.00 1 0 1 0 0 0 0
...............................................GGTTGTCACTACCTCGAAATCTA..................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGTCACTACCTTGAAATCTATTAGT................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
............................................................................................TCCTTCACTTTTCGCAACGGAAAAAA..................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.......................................CGCACAATGGTTGTCACTACC............................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...............................................GGTTGTCACTACCTTGAGATCTATTA.................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
...............................................GGTTGTCACTACCTTGAAATCTATT................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...........................................................................CACAACGTAACGCTAATTCCTTCACTTT.................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0
...............................................GGTTGTCACTACCTTGAAATCTAT.................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................ATAAGAAAGCAGCGAGGT................................................... 18 1 2 0.50 1 0 0 0 0 1 0
..............................................................................................CTTCAGTCTTCGCAACGG........................................................................................................................................... 18 2 4 0.50 2 2 0 0 0 0 0
........................................................................................................CCCACCGGAAAAAAAAAAATTTC............................................................................................................................ 23 3 5 0.20 1 0 1 0 0 0 0
........................................................................AGTAACAACGTAACGGTAA................................................................................................................................................................ 19 2 7 0.14 1 0 0 0 0 0 1
.....................................................................................................................................................................................................................TCTCACACACCTCGCTCTGT.................. 20 3 7 0.14 1 0 0 0 0 0 1
...............................................................................................TTCAGTCTTCGCAACGGTAA........................................................................................................................................ 20 3 9 0.11 1 1 0 0 0 0 0
...........................................................CTTGAAATCTATAAGTCAGA............................................................................................................................................................................ 20 2 11 0.09 1 0 0 1 0 0 0
..............................................................................................CTTCAGTCTTCGCAACGGTA......................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0
...........................................................................................................................................CGGTATTTAAACGTTCCAG............................................................................................. 19 2 12 0.08 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................CTGCCCCCGCTGTGTAGGTG............. 20 3 13 0.08 1 0 1 0 0 0 0
..........................................................................................................CCAAGGAAATAAAAAAATTTAG........................................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12943:970228-970478 - dan_903 TTTTAGCGATTGCGTTTTTTGAATTCACAAATCAAATTGGCGTGTTACCAACAGTGATGGAACTTTAGATAATCAGTGTTGCATTGCGATTAAGGAAGTGAAAAGCGTTGCCTTTTTTTTTTTAAATCGAAAAAGAATCGCGATAAATTTGCAAAGTCCACATATTATTATTTATTATTTATTATTTTTTCGTCGCTCCAGTCTCAAAGCGTAAGAGTGACTGGAGCGACACATCCAACACCAGCTCCGGC
droBip1 scf7180000396717:323200-323270 - TT--A-----------------------------------------------------------------------------------------------------------------------AGTAAAACAACCATTTTGTTATTTTTGCAATAATAATTTATTATTATATATTATTTTTAAACTTTTTG-----------------------------------------------------------
droKik1 scf7180000302686:1156511-1156554 - AT--A--------------------------------------------------------------------------------------------------------------------------------------------GCTATATAAAGAAAATATATTATTATATATTATTTATTATT-----------------------------------------------------------------
droFic1 scf7180000454106:432389-432427 - AG--A--------------------------------------------------------------------------------------------------------------------------------------------------------CCAAATATTTTTATTTATTGTTCCCTCTTTTTTCA-------T---------------------------------------------------
droEle1 scf7180000491347:81807-81843 + AT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTTATTATTAATTATTTATCTGCTTATCCA---------------------------------------------------
droRho1 scf7180000779636:927-955 + TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTTATTATTATATATTTTTTCG-------T---------------------------------------------------
droTak1 scf7180000415364:62669-62708 + CT--AGCGTGCGCGTATTTTACATTTACAATTAAAATT------------------------------------------------------------------------------------------------------------------------------------------------------GGCG-----------------------------------------------------------
droSec2 scaffold_293:4074-4100 - TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATTTATTATTTATTATTTATTC------------------------------------------------------------
droWil2 scf2_1100000004511:9239034-9239083 + AT--T------------------------------------------------------------------------------------------------------------------------------------------------TATAATATGTATATATTTATATTTATTATTTATCAGTCATTCACCA----C---------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTTTAGCGATTGCGTTTTTTGAATTCACAAATCAAATTGGCGTGTTACCAACAGTGATGGAACTTTAGATAATCAGTGTTGCATTGCGATTAAGGAAGTGAAAAGCGTTGCCTTTTTTTTTTTAAATCGAAAAAGAATCGCGATAAATTTGCAAAGTCCACATATTATTATTTATTATTTATTATTTTTTCGTCGCTCCAGTCTCAAAGCGTAAGAGTGACTGGAGCGACACATCCAACACCAGCTCCGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................TTGGCGTGTTACCAACAGTGATGGAAC............................................................................................................................................................................................2717.007060010
...................TGAATTCACAAATCAAATTGGCGTG...............................................................................................................................................................................................................2513.003030000
....................................................................................TGCGATTAAGGAAGTGAAAAGCGTTGCC...........................................................................................................................................2813.003120000
....................................................................................................................................................................................................TCCAGTCTCAAAGCGTAAGAGTGAC..............................2512.002020000
........................................................................TCAGTGTTGCATTGCGATTAAGGAAG.........................................................................................................................................................2612.002020000
.................................................................................CATTGCGATTAAGGAAGTGAAAAGC.................................................................................................................................................2512.002200000
.....................................TGGCGTGTTACCAACAGTGATGGAAC............................................................................................................................................................................................2612.002020000
.................................................................TAGATAATCAGTGTTGCATTGCGAT.................................................................................................................................................................2512.002100010
...............................................................................................................................................................................................................AGCGTAAGAGTGACTGGAGCGACACATC................2812.002200000
...................TGAATTCACAAATCAAATTGGCGTGT..............................................................................................................................................................................................................2612.002020000
.................TTTGAATTCACAAATCAAATTGGCGT................................................................................................................................................................................................................2611.001010000
.......................................................GATGGAACTTTAGATAATCAGTGTTG..........................................................................................................................................................................2611.001001000
................................................................................................................................................................................................................GCGTAAGAGTGACTGGAGCGACACATC................2711.001010000
....................................TTGGCGTGTTACCAACAGTGATGGAA.............................................................................................................................................................................................2611.001000010
...................TGAATTCACAAATCAAATTGGCGTT...............................................................................................................................................................................................................2511.001000010
.........................................................................................................................................................................................................................TGACTGGAGCGACACATCCAACACC.........2511.001100000
........................................................................TCAGTGTTGCATTGCGATTAAGGAA..........................................................................................................................................................2511.001100000
...................................................................GATAATCAGTGTTGCATTGCGA..................................................................................................................................................................2211.001100000
.....................................................................................................................................................................................TTATTTTTTCGTCGCTCCAGTCTCAAAGC.........................................2911.001100000
............................................................................................................................................................................................................CAAAGCGTAAGAGTGACTGGAGC........................2311.001010000
....................................TTGGCGTGTTACCAACAGTGA..................................................................................................................................................................................................2111.001010000
................................................................TTAGATAATCAGTGTTGCATTGCGA..................................................................................................................................................................2511.001000010
........................................................................TCAGTGTTGCATTGCGATTAAGGA...........................................................................................................................................................2411.001010000
........................................................................TCAGTGTTGCATTGCGATTAAGG............................................................................................................................................................2311.001100000
.............................................TACCAACAGTGATGGAACTTTAGATA....................................................................................................................................................................................2611.001010000
..............................................................................................GAAGTGAAAAGCGTTGCCTTTTTTTT...................................................................................................................................2611.001000010
.................................................................................................................................................................................TTTATTATTTTTTCGTCGCTCCAGTCTCA.............................................2911.001100000
......................................................................................................................................................................................TATTTTTTCGTCGCTCCAGTC................................................2111.001100000
.......................................................................................GATTAAGGAAGTGAAAAGCGT...............................................................................................................................................2111.001100000
......................................................................................................................................................................................TATTTTTTCGTCGCTCCAGTCTCAAAG..........................................2711.001100000
.........................................................................CAGTGTTGCATTGCGATTAAGGAAG.........................................................................................................................................................2511.001100000
.....................AATTCACAAATCAAATTGGCGTGTT.............................................................................................................................................................................................................2511.001010000
...................................................................................................................................................................................................................TAAGAGTGACTGGAGCGACACATCCAA.............2711.001001000
............................................................AACTTTAGATAATCAGTGTTGCATTG.....................................................................................................................................................................2611.001100000
..........................................................................................TAAGGAAGTGAAAAGCGTTGCC...........................................................................................................................................2211.001010000
..................................................................................................................................................................................................................GTAAGAGTGACTGGAGCGACACATCCAAC............2911.001100000
.............................................................................................................................................................................................................AAAGCGTAAGAGTGACTGGAGCG.......................2311.001001000
.....................................TGGCGTGTTACCAACAGTGATGGAA.............................................................................................................................................................................................2511.001001000
.....................................................................................................................................................................................TTATTTTTTCGTCGCTCCAGTCTCAAA...........................................2711.001100000
.....................................................................TAATCAGTGTTGCATTGCGATTAAG.............................................................................................................................................................2511.001100000
................................................................TTAGATAATCAGTGTTGCATTGCGAT.................................................................................................................................................................2611.001010000
...................................................................................................................................................................................................................TAAGAGTGACTGGAGCGACACATCCAAC............2811.001100000
.......................................................................................................................................................CAAAGTCCACATATTATTATTTATT...........................................................................2511.001100000
...........................................................................................................................................................................................................TCAAAGCGTAAGAGTGACTGGAGC........................2411.001010000
.........................................................................................................................................................................................TTTTTCGTCGCTCCAGTCTCAAAGCG........................................2611.001100000
.............................................................................................................................................................................................TCGTCGCTCCAGTCTCAAAG..........................................2011.001100000
...................................................................................................................................................................................................................TAAGAGTGACTGGAGCGACACATC................2411.001010000
..................TTGAATTCACAAATCAAATTGGC..................................................................................................................................................................................................................2311.001100000
....................GAATTCACAAATCAAATTGGCC.................................................................................................................................................................................................................2211.001010000
...................................................................................................................................................................................................................TAAGAGTGACTGGAGCGACACATCC...............2511.001010000
.........................................................TGGAACTTTAGATAATCAGTGTTGCATT......................................................................................................................................................................2811.001010000
....................................TTGGCGTGTTACCAACAGTGATGGA..............................................................................................................................................................................................2511.001001000
......................................................................................................................................................................................TATTTTTTCGTCGCTCCAGTCTCAAA...........................................2611.001100000
.................................................................TAGATAATCAGTGTTGCATTGCGAC.................................................................................................................................................................2511.001010000
...................TGAATTCACAAATCAAATTGGCGT................................................................................................................................................................................................................2411.001010000
..............TTTTTTGAATTCACAAATCAAATTGGC..................................................................................................................................................................................................................2711.001010000
.................................................AACAGTGATGGAACTTTAGATAATCAG...............................................................................................................................................................................2711.001001000
.......................TTCACAAATCAAATTGGCGTGTTAC...........................................................................................................................................................................................................2511.001010000
...................TGAATTCACAAATCAAATTGGCGTGC..............................................................................................................................................................................................................2611.001010000
...........................................................................................AAGGAAGTGAAAAGCGTTGCCTTTTTT.....................................................................................................................................2711.001000010
.......................................................................................................................................................................................................................................CATCCAACACCAGCTCCGG.1911.001100000
......................................................................................................................................................................................TATTTTTTCGTCGCTCCAGTCTCAAAGC.........................................2811.001100000
............................................................................TGTTGCATTGCGATTAAGGAAGT........................................................................................................................................................2311.001100000
...................................................................................................................................................................................TATTATTTTTTCGTCGCTCCAGTCTC..............................................2611.001010000
............................................................................TGTTGCATTGCGATTAAGGAAGTGA......................................................................................................................................................2511.001010000
........................................................................................................................................................................................TTTTTTCGTCGCTCCAGTCTCAAAGC.........................................2611.001000010
.......................................................................................................................................................................................................................................CATCCAACACCAGCTCCGGC2011.001010000
.................................................................TAGATAATCAGTGTTGCATTGCGA..................................................................................................................................................................2411.001000010
droBip1
TT--A-----------------------------------------------------------------------------------------------------------------------AGTAAAACAACCATTTTGTTATTTTTGCAATAATAATTTATTATTATATATTATTTTTAAACTTTTTG-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AT--A--------------------------------------------------------------------------------------------------------------------------------------------GCTATATAAAGAAAATATATTATTATATATTATTTATTATT-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AG--A--------------------------------------------------------------------------------------------------------------------------------------------------------CCAAATATTTTTATTTATTGTTCCCTCTTTTTTCA-------T---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTTATTATTAATTATTTATCTGCTTATCCA---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTTATTATTATATATTTTTTCG-------T---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CT--AGCGTGCGCGTATTTTACATTTACAATTAAAATT------------------------------------------------------------------------------------------------------------------------------------------------------GGCG-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSec2
TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATTTATTATTTATTATTTATTC------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droWil2
AT--T------------------------------------------------------------------------------------------------------------------------------------------------TATAATATGTATATATTTATATTTATTATTTATCAGTCATTCACCA----C---------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/17/2015 at 11:31 PM