ID:

dan_902

 Coordinate:

scaffold_12943:969851-970001 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.1 -4.1 -4.0

Flybase annnotation

CDS [Dana\GF21940-cds]; exon [dana_GLEANR_594:3]; intron [Dana\GF21940-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGGCGCGCCGGAGCAATCGGTGATCGCTCCCAACGATTCGATGGAATCAAGTCTTGAAATGTACATGCTTAACAGGTGCTTAAAAAATCTATTATTTATTAATTACCAATTATACGTTCAATTATTTTTCATAACGTTTCATTGTAAGAGCATGTGCCACGCCGAGGTCGCCGGGCCCTGGGAGCCCCACGCGTTGCCAATTTTTTTTTATAAATCGAAAAAACTTCTTTAATTCGAGAAAAGTGGAGTTT
************************************************************************************************......................................(((..((((((....))).)))..)))..**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V039
embryo
 V106
head
 V055
head
.........................................................................................................................................TTCATTGTAAGAGCATGTGCCACGCC........................................................................................ 26 0 1 14.00 14 12 2 0 0 0 0
...................................................................................................................................TAACGTTTCATTGTAAGAGCATGTGC.............................................................................................. 26 0 1 12.00 12 1 2 1 7 1 0
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCGAGG.................................................................................... 26 0 1 9.00 9 2 6 0 1 0 0
..............................................................................................................................................TGTAAGAGCATGTGCCACGCCGAGG.................................................................................... 25 0 1 7.00 7 1 4 0 2 0 0
..........................................................................................................................................TCATTGTAAGAGCATGTGCCACGCC........................................................................................ 25 0 1 7.00 7 5 2 0 0 0 0
..........................................................................................................................................................TGCCACGCCGAGGTCGCCGGGCCC......................................................................... 24 0 1 4.00 4 3 1 0 0 0 0
.................................................................................................................................CATAACGTTTCATTGTAAGAGCATGTGC.............................................................................................. 28 0 1 3.00 3 0 0 3 0 0 0
..........................................................................................................................................................TGCCACGCCGAGGTCGCCGGGCC.......................................................................... 23 0 1 3.00 3 2 1 0 0 0 0
..............................................................................................................................................TGTAAGAGCATGTGCCACGCCGAGGT................................................................................... 26 0 1 3.00 3 2 1 0 0 0 0
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCGAG..................................................................................... 25 0 1 3.00 3 1 1 1 0 0 0
................................................................................................................................TCATAACGTTTCATTGTAAGAGCATG................................................................................................. 26 0 1 3.00 3 0 2 0 1 0 0
................................................................................................................................................TAAGAGCATGTGCCACGCCGAGGT................................................................................... 24 0 1 3.00 3 1 1 1 0 0 0
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCGAGGTC.................................................................................. 28 0 1 3.00 3 0 3 0 0 0 0
.........................................................................................................................................TTCATTGTAAGAGCATGTGCCACGC......................................................................................... 25 0 1 3.00 3 1 2 0 0 0 0
................................................................................................................................................TAAGAGCATGTGCCACGCCGAGGTC.................................................................................. 25 0 1 3.00 3 2 1 0 0 0 0
...............................................................................................................................................................................................................TTATAAATCGAAAAAACTTCTTTAATT................. 27 0 1 2.00 2 0 0 2 0 0 0
...........................................GAATCAAGTCTTGAAATGTACATGCT...................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
........................................................................................................................................TTTCATTGTAAGAGCATGTGCCACGCC........................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0
................................................................................................TATTAATTACCAATTATACGTTCAAT................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCGA...................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0
...............................................................................................................................................................................................................TTATAAATCGAAAAAACTTCTTTAATTC................ 28 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................................TGTAAGAGCATGTGCCACGCCGA...................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0
.......................................................................................................TACCAATTATACGTTCAATTAT.............................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................TAACGTTTCATTGTAAGAGCATGTGCC............................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................TCGCCGGGCCCTGGGAGCCCCACGCG.......................................................... 26 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................GCCACGCCGAGGTCGCCGGGCCCTG....................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................ATTGTAAGAGCATGTGCCACGCCGA...................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................TTTCATAACGTTTCATTGTAAGAGCA................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.....................................................................TAACAGGTGCTTAAAAAATCTATTATT........................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................TCATTGTAAGAGCATGTGCCACGCCGA...................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................TCATAACGTTTCATTGTAAGAGCA................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................................TTTCATTGTAAGAGCATGTGCCACGCCGA...................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................TTTAAGAGCATGTGCCACGCCGAGG.................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCCAGG.................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................................TGTGCCACACCGAGGTCGCCGGGCCCTG....................................................................... 28 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................TTTAAGAGCATGTGCCACGCCGAG..................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................TTGTAAGAGCATGTGCCACGC......................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
..................................................................................................................................ATAACGTTTCATTGTAAGAGCATGGGCC............................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................TGTAAGAGCATGTGCCACGCCGAGGTC.................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................TCGCCGGGCCCTGGGAGCCCCA.............................................................. 22 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................TGCCACGCCGAGGTCGCCGGGCCCTG....................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................TTACCAATTATACGTTCAATTATTT............................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................TTCATTGTAAGAGCATGTGCCACGCCG....................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TACCAATTATACGTTCAATTATT............................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................CACAACGTTTCATTGTAAGAGCATGTGCC............................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................GCCGAGGTCGCCGGGCCCTG....................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................ATGTCGCCGGGCCCTGGGAGCCC................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................TGTGCCACGCCGAGGTCGCCGCGCCCTG....................................................................... 28 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................TTAATTACCAATTATACGT...................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
................................................................................................TATTAATTACCAATTATACGTTCAAC................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................TGTGCCACGCCGAGGTCGCCGGG............................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................TGTGCCACGCCGAGGTCGCCGGGCCCTG....................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................GTGCCACGCCGAGGTCGCCGGGCC.......................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................TAATTACCAATTATACGTTCAATTATT............................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................TGGTAAGAGCATGTGCCACGCCGAGGC................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................TAACGTTTCATTGTAAGCGCGTGTGT.............................................................................................. 26 3 1 1.00 1 0 0 0 1 0 0
................................................AAGTCTTGAAATGTACATGCTTAACA................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................TAACGTTTCATTGTAAGAGCATGT................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................TCATTGTAAGAGCATGTGCCACGC......................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................GAGCATGTGCCACGCCGAGGTCGCCGG............................................................................. 27 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TACCAATTATACGTTCAATTATTTTT.......................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................ACGTTTCATTGTAAGAGCATGTGC.............................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................................................................AGCCGGGCCCTGGGAGCC................................................................. 18 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................GGTCGCCGGGCCCTGGGAGCCCCAC............................................................. 25 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................GTCATAACGTTTCATTGTAAGAGCATG................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................ACGTTTCATTGTAAGATCATGTTC.............................................................................................. 24 2 1 1.00 1 0 0 0 1 0 0
..............................................................................................................................................................ACGCCGAGGTCGCCGGGCCCT........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................GCCACGCCGAGGTCGCCGGGCCC......................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................CATTGTAAGAGCATGTGCCACGCCGA...................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................TGTGCCACGCCGAGGTCGCCGGGC........................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................TTCATTGTAAGAGCATGTGCCCCGCC........................................................................................ 26 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCG....................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
............................................AATCAAGTCTTGAAATGTACATGCT...................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................AACGTTTCATTGTAAGATCATGTGCCAC........................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................TAAGAGCATGTGCCACGCCGAGGAC.................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
.............................................................TACATGCTTAACAGGTGCTTAAAAAATC.................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................TGGTAAGAGCATGTGCCACGCCGAG..................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................TGCATTGTAAGAGCCTGTGCCACGCCGA...................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................TAAGAGCATGTGCCACGCCGAGGTCGC................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................TGCATTGTAAGAGCATGTGCCACGCC........................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................CATAACGTGTCATTGTAAGAGCATGTG............................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
.........................................TGGAATCAAGTCTTGAAATGT............................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................GAGCATGTGCCACGCCGAGGTCGAC............................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................GAGCATGTGCCACGCCGAGGTCGT................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................TGTAAGAGCATGTGCCACGCCGAGT.................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0
................................................................................................................................TCATAACGTTTCATTGTAAGAGCATGTG............................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................TTCATAACGTTTCATTGTAAGAGCATG................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................TAAGAGCATGTGCCACGCCGAGGTCG................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................TTAATTGTAAGAGCATGTGCCACGCC........................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
..............................................TCAAGTCTTGAAATGTACATGCT...................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................TGTGCCACGCCGAGGTCGCCGGGCCC......................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................TCTTTAATTCGAGAAAAGTGGAGT.. 24 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................GACGTCGGCGAGCCCTGGGA.................................................................... 20 3 5 0.40 2 0 2 0 0 0 0
............................................................................................................................................................................GGGTCGTGGGTGCCCCACG............................................................ 19 3 14 0.07 1 1 0 0 0 0 0
....................................TTCGATGGAATCAAGTCTTGAAAT............................................................................................................................................................................................... 24 0 19 0.05 1 1 0 0 0 0 0
....................................TTCGATGGAATCAAGTCTTGAAATC.............................................................................................................................................................................................. 25 1 19 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TTTTTTATTAATCGAAAAAAGA.......................... 22 3 20 0.05 1 1 0 0 0 0 0
................................................................ATGCTCAACAGGTGCTTAA........................................................................................................................................................................ 19 1 20 0.05 1 1 0 0 0 0 0
...................................ATTCGATGGAATCAAGTCTTGAAA................................................................................................................................................................................................ 24 0 20 0.05 1 0 0 1 0 0 0
.....................................TCGATGGAATCAAGTCTTGAA................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 1 0 0
..........................................................................................................................................................................................................................AACAACTTCTTTAATTCGATG............ 21 3 20 0.05 1 0 0 0 0 0 1
..............................................................ACATGCTTAACAGGTGCTT.......................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CCCGCGCGGCCTCGTTAGCCACTAGCGAGGGTTGCTAAGCTACCTTAGTTCAGAACTTTACATGTACGAATTGTCCACGAATTTTTTAGATAATAAATAATTAATGGTTAATATGCAAGTTAATAAAAAGTATTGCAAAGTAACATTCTCGTACACGGTGCGGCTCCAGCGGCCCGGGACCCTCGGGGTGCGCAACGGTTAAAAAAAAATATTTAGCTTTTTTGAAGAAATTAAGCTCTTTTCACCTCAAA
****************************************************************************************......................................(((..((((((....))).)))..)))..************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V039
embryo
 V106
head
 V055
head
..................CCACTAGCGAGGGTTGCTAAGCTACCT.............................................................................................................................................................................................................. 27 0 1 4.00 4 4 0 0 0 0 0
............................................................CATGTACGAATTGTCCACGAATTTT...................................................................................................................................................................... 25 0 1 3.00 3 2 1 0 0 0 0
...............................................................................................................................................................................................GCAACGGTTAAAAAAAAATATTTAGC.................................. 26 0 2 2.00 4 3 1 0 0 0 0
.CCGCGCGGCCTCGTTAGCCACTAG.................................................................................................................................................................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................GTGCGGCTCCAGCGGCCCGGGACCCT.................................................................... 26 0 1 2.00 2 0 2 0 0 0 0
.CCGCGCGGCCTCGTTAGCCACT.................................................................................................................................................................................................................................... 22 0 1 2.00 2 1 1 0 0 0 0
....CGCGGCCTCGTTAGCCACTAGCGA............................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
...............................TAGCTAAGCTACCTTAGTTCAGAACT.................................................................................................................................................................................................. 26 1 3 1.67 5 0 2 0 2 1 0
....................................................................................................................................................................................CCTCGGGGTGCGCAACGGTTAAAAA.............................................. 25 0 2 1.50 3 3 0 0 0 0 0
...............................TAGCTAAGCTACCTTAGTTCAGAAC................................................................................................................................................................................................... 25 1 3 1.33 4 1 0 0 3 0 0
...........................................................................................................................................GTAACATTCTCGTACACGGTGCGGCT...................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................GGTGCGGCTCCAGCGGCCCGGGAC....................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................TCAGCGGCCCGGGACCCTCGGGGT.............................................................. 24 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................GGTGCGGCTCCAGCGGCCCGGGACCCT.................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
...........TCGTTAGCCACTAGCGAGGGTTGCT....................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0
.................................................................................................................TGCAGGTTAAGAAAAAGTA....................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0
CCCGCGCGGCCTCGTTAGCCACTAG.................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................TGCGGCTCCAGCGGCCCGGGACCCT.................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...........................................CTTAGTTCAGAACTTTACATGTACGAAT.................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
...............CAGCCACTAGCGAGGGTTGCTAAGGT.................................................................................................................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0
CCCGCGCGGCCTCGTTAGCCACTAGC................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
..........................................................................CCACGAATTTTTTAGATAATAAATAAT...................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..CGCGCGGCCTCGTTAGCCACTAGC................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
..................CCACTAGCGAGGGTTGCTAAGCTAC................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
..................CCACTAGCGAGGGTTGCTAAGCTACGT.............................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................CGGGGTGCGCAACGGTTAAAAAAAAAT......................................... 27 0 2 1.00 2 2 0 0 0 0 0
...............................................................................................................................................................GCGGCTCCAGCGGCCCGGGACCCT.................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................CAGCTCCAGCGGCCCGGGACCCT.................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...GCGCGGCCTCGTTAGCCACTAG.................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................AACATTCTCGTACACGGTGCGGCTCCA................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
...........................................................................CACGAATTTTTTAGATAATAAATAAT...................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................TTACATGTACGAATTGTC................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0
....................ACTAGCGAGGGTTGCTAAGCTACCTT............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................GGCTCCAGCGGCCCGGGACCCT.................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.......................................................CTTTACATGTAGGAATTGTC................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
CCCGCGCGGCCTCGTTAGCCACTA................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................CGGCTCCCGCCGCCCGGGACCC..................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................TGCTAAGCTACCTTAGTTCAGAAC................................................................................................................................................................................................... 24 0 20 0.70 14 0 1 9 2 2 0
...............................................................................................................................................................................................................................GAAGAAATTAAGCTCTTTTCACCTCA.. 26 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................................................CTCGGGGTGCGCAACGGTTAAAAA.............................................. 24 0 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................................................CGCAACGGTTAAAAAAAAATATTTAGCT................................. 28 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................CCTCGGGGTGCGCAACGGTTAAAAAA............................................. 26 0 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................................................CAACGGTTAAAAAAAAATAT....................................... 20 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................................................CTCGGGGTGCGCAACGGTTAAAA............................................... 23 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................................GGTGCGCAACGGTTAAAAAAAAAT......................................... 24 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................................CGGGGTGCGCAACGGTTAAAAAA............................................. 23 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................TCGGGGTGCGCAACGGTTAAAA............................................... 22 0 2 0.50 1 0 1 0 0 0 0
...............................TTGCTAAGCTACCTTAGTTCAGAACT.................................................................................................................................................................................................. 26 0 2 0.50 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................GAAGAAATTAAGCTCTTTTCACCT.... 24 0 2 0.50 1 1 0 0 0 0 0
.....................CTAGCGACGGTTGCTAAGCTACCTT............................................................................................................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................GCGCAACGGTTAAAAAAAAATATTTAG................................... 27 0 2 0.50 1 1 0 0 0 0 0
................................TGCTAAGCTACCTTAGTTCAGAACT.................................................................................................................................................................................................. 25 0 20 0.45 9 0 1 6 0 2 0
................................TGCTAAGCTACCTTAGTTCAGAACTT................................................................................................................................................................................................. 26 0 20 0.40 8 0 0 8 0 0 0
............................................................................................................................................................................................TGCGCAACGGTTATAACAAAC.......................................... 21 3 6 0.17 1 1 0 0 0 0 0
.................................GCTAAGCTACCTTAGTTCAGAAC................................................................................................................................................................................................... 23 0 20 0.15 3 0 3 0 0 0 0
................................TGCTAAGCTACCTTAGTTCAGAACTTT................................................................................................................................................................................................ 27 0 20 0.15 3 2 0 1 0 0 0
................................TGCTAAGCTACCTTAGTTCAGAA.................................................................................................................................................................................................... 23 0 20 0.10 2 0 0 1 1 0 0
................................................................................................................................................................CGGCTCCAGTGGGCGGGGAC....................................................................... 20 3 15 0.07 1 0 0 0 0 0 1
................................TGATAAGCTACCTTAGTTCAGAACTTTA............................................................................................................................................................................................... 28 1 19 0.05 1 0 0 1 0 0 0
...................................TAAGCTACCTTAGTTCAGAACT.................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 1 0 0
..................................CTAAGCTACCTTAGTTCAGAA.................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
............................................................CATGTACGAATTGTCCACGAA.......................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..............................................................CGTACGAATTGTCCACGAAT......................................................................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0
.................................GCTAAGCTACCTTAGTTCAGAACTT................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0
.....................................AGCTACCTTAGTTCAGAAC................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
.................................GCTAAGCTACCTTAGTTCAGAACTC................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0
................................TCCTCAGCTACCTTAGCTCAGAACT.................................................................................................................................................................................................. 25 3 20 0.05 1 0 0 0 1 0 0
..................................................................................................................................................................................ACCCTCGGAGAGCTCAACG...................................................... 19 3 20 0.05 1 0 0 0 0 1 0
...........................................................ACATGTACGAATTGTCCACGAATT........................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
................................TGCTAAGCTACCTTAGTTCAG...................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0
.......................................CTACCTTAGTTCAGAACTTTA............................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
................................TGCTAACCTACCTTAGTTCAGAACT.................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 1 0 0
...........................................................TCATGTACGAATTGTCCACGAAT......................................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0
................................TGCTCAGCTACCTTAGTTCAGAACT.................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 1 0 0
...........................................................ACATGTACGAATTGTCCAC............................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
................................TGCTAATCTACCTTAGTTCAGAACT.................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 0 1 0
..............................................................................................................................................................TGCGGCTCCCGCGACCCGC.......................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12943:969801-970051 - dan_902 GGGCGCGCCGGAGCAATCGGTGATCGCTCCCAACGATTCGATGGAATCAAGTCTTGAAATGTACATGCTTAACAGGTGCTTAAAAAATCTATTATTTATTAATTACCAATTATACGTTCAATTATTTTTCATAACGTTTCATTGTAAGAGCATGTGCCACGCCGAGGTCGCCGGGCCCTGGGAGCCCCACGCGTTGCCAATTTTTTTTTATAAATCGAAAAAACTTCTTTAATTCGAGAAAAGTGGAGTTT
droBip1 scf7180000395051:20914-20950 - A----------------------TCGCTCCCAAAGATTTAAAGAAATCAAGTCCCGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491193:163489-163530 + T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGCCAAATCGACTCATTTATATTGAAAAGAAA------------------------AAGTTA
droRho1 scf7180000775576:9671-9720 - C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACACGCTGTCAAGTTTTTTTTGCTAATCGAATA----TCTTTAATTCAAGA------------
droBia1 scf7180000302183:9880-9931 + G-----------------------------------------------------------------------------CTTGAAAATAACATTTTTTATTAATTCCGAATTTTAAATTAAATTTTTTTT--------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004921:739564-739598 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTTCATTAATCGAAAAAACATTCTCAATT-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGGCGCGCCGGAGCAATCGGTGATCGCTCCCAACGATTCGATGGAATCAAGTCTTGAAATGTACATGCTTAACAGGTGCTTAAAAAATCTATTATTTATTAATTACCAATTATACGTTCAATTATTTTTCATAACGTTTCATTGTAAGAGCATGTGCCACGCCGAGGTCGCCGGGCCCTGGGAGCCCCACGCGTTGCCAATTTTTTTTTATAAATCGAAAAAACTTCTTTAATTCGAGAAAAGTGGAGTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................TTCATTGTAAGAGCATGTGCCACGCC........................................................................................26114.00142120000
...................................................................................................................................TAACGTTTCATTGTAAGAGCATGTGC..............................................................................................26112.0012217011
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCGAGG....................................................................................2619.009621000
..............................................................................................................................................TGTAAGAGCATGTGCCACGCCGAGG....................................................................................2517.007412000
..........................................................................................................................................TCATTGTAAGAGCATGTGCCACGCC........................................................................................2517.007250000
..........................................................................................................................................................TGCCACGCCGAGGTCGCCGGGCCC.........................................................................2414.004130000
.................................................................................................................................CATAACGTTTCATTGTAAGAGCATGTGC..............................................................................................2813.003000030
..........................................................................................................................................................TGCCACGCCGAGGTCGCCGGGCC..........................................................................2313.003120000
..............................................................................................................................................TGTAAGAGCATGTGCCACGCCGAGGT...................................................................................2613.003120000
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCGAG.....................................................................................2513.003110010
................................................................................................................................TCATAACGTTTCATTGTAAGAGCATG.................................................................................................2613.003201000
................................................................................................................................................TAAGAGCATGTGCCACGCCGAGGT...................................................................................2413.003110010
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCGAGGTC..................................................................................2813.003300000
.........................................................................................................................................TTCATTGTAAGAGCATGTGCCACGC.........................................................................................2513.003210000
................................................................................................................................................TAAGAGCATGTGCCACGCCGAGGTC..................................................................................2513.003120000
...............................................................................................................................................................................................................TTATAAATCGAAAAAACTTCTTTAATT.................2712.002000020
...........................................GAATCAAGTCTTGAAATGTACATGCT......................................................................................................................................................................................2612.002020000
........................................................................................................................................TTTCATTGTAAGAGCATGTGCCACGCC........................................................................................2712.002020000
................................................................................................TATTAATTACCAATTATACGTTCAAT.................................................................................................................................2612.002020000
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCGA......................................................................................2412.002110000
...............................................................................................................................................................................................................TTATAAATCGAAAAAACTTCTTTAATTC................2812.002020000
..............................................................................................................................................TGTAAGAGCATGTGCCACGCCGA......................................................................................2312.002110000
.......................................................................................................TACCAATTATACGTTCAATTAT..............................................................................................................................2211.001100000
...................................................................................................................................TAACGTTTCATTGTAAGAGCATGTGCC.............................................................................................2711.001010000
.......................................................................................................................................................................TCGCCGGGCCCTGGGAGCCCCACGCG..........................................................2611.001100000
...........................................................................................................................................................GCCACGCCGAGGTCGCCGGGCCCTG.......................................................................2511.001100000
............................................................................................................................................ATTGTAAGAGCATGTGCCACGCCGA......................................................................................2511.001100000
..............................................................................................................................TTTCATAACGTTTCATTGTAAGAGCA...................................................................................................2611.001010000
.....................................................................TAACAGGTGCTTAAAAAATCTATTATT...........................................................................................................................................................2711.001100000
..........................................................................................................................................TCATTGTAAGAGCATGTGCCACGCCGA......................................................................................2711.001010000
................................................................................................................................TCATAACGTTTCATTGTAAGAGCA...................................................................................................2411.001000010
........................................................................................................................................TTTCATTGTAAGAGCATGTGCCACGCCGA......................................................................................2911.001100000
.............................................................................................................................................TTGTAAGAGCATGTGCCACGC.........................................................................................2111.001001000
..............................................................................................................................................TGTAAGAGCATGTGCCACGCCGAGGTC..................................................................................2711.001100000
.......................................................................................................................................................................TCGCCGGGCCCTGGGAGCCCCA..............................................................2211.001100000
..........................................................................................................................................................TGCCACGCCGAGGTCGCCGGGCCCTG.......................................................................2611.001100000
......................................................................................................TTACCAATTATACGTTCAATTATTT............................................................................................................................2511.001010000
.........................................................................................................................................TTCATTGTAAGAGCATGTGCCACGCCG.......................................................................................2711.001000010
.......................................................................................................TACCAATTATACGTTCAATTATT.............................................................................................................................2311.001010000
................................................................................................................................................................GCCGAGGTCGCCGGGCCCTG.......................................................................2011.001100000
..................................................................................................TTAATTACCAATTATACGT......................................................................................................................................1911.001010000
................................................................................................TATTAATTACCAATTATACGTTCAAC.................................................................................................................................2611.001010000
........................................................................................................................................................TGTGCCACGCCGAGGTCGCCGGG............................................................................2311.001010000
........................................................................................................................................................TGTGCCACGCCGAGGTCGCCGGGCCCTG.......................................................................2811.001100000
.........................................................................................................................................................GTGCCACGCCGAGGTCGCCGGGCC..........................................................................2411.001100000
...................................................................................................TAATTACCAATTATACGTTCAATTATT.............................................................................................................................2711.001010000
................................................AAGTCTTGAAATGTACATGCTTAACA.................................................................................................................................................................................2611.001100000
...................................................................................................................................TAACGTTTCATTGTAAGAGCATGT................................................................................................2411.001000010
..........................................................................................................................................TCATTGTAAGAGCATGTGCCACGC.........................................................................................2411.001100000
...................................................................................................................................................GAGCATGTGCCACGCCGAGGTCGCCGG.............................................................................2711.001100000
.......................................................................................................TACCAATTATACGTTCAATTATTTTT..........................................................................................................................2611.001010000
.....................................................................................................................................ACGTTTCATTGTAAGAGCATGTGC..............................................................................................2411.001000010
.....................................................................................................................................................................GGTCGCCGGGCCCTGGGAGCCCCAC.............................................................2511.001100000
..............................................................................................................................................................ACGCCGAGGTCGCCGGGCCCT........................................................................2111.001010000
...........................................................................................................................................................GCCACGCCGAGGTCGCCGGGCCC.........................................................................2311.001010000
...........................................................................................................................................CATTGTAAGAGCATGTGCCACGCCGA......................................................................................2611.001100000
........................................................................................................................................................TGTGCCACGCCGAGGTCGCCGGGC...........................................................................2411.001010000
.............................................................................................................................................TTGTAAGAGCATGTGCCACGCCG.......................................................................................2311.001100000
............................................AATCAAGTCTTGAAATGTACATGCT......................................................................................................................................................................................2511.001010000
.............................................................TACATGCTTAACAGGTGCTTAAAAAATC..................................................................................................................................................................2811.001100000
................................................................................................................................................TAAGAGCATGTGCCACGCCGAGGTCGC................................................................................2711.001100000
.........................................TGGAATCAAGTCTTGAAATGT.............................................................................................................................................................................................2111.001100000
...................................................................................................................................................GAGCATGTGCCACGCCGAGGTCGT................................................................................2411.001000010
..............................................................................................................................................TGTAAGAGCATGTGCCACGCCGAGT....................................................................................2511.001000010
................................................................................................................................TCATAACGTTTCATTGTAAGAGCATGTG...............................................................................................2811.001000010
...............................................................................................................................TTCATAACGTTTCATTGTAAGAGCATG.................................................................................................2711.001000010
................................................................................................................................................TAAGAGCATGTGCCACGCCGAGGTCG.................................................................................2611.001100000
..............................................TCAAGTCTTGAAATGTACATGCT......................................................................................................................................................................................2311.001010000
........................................................................................................................................................TGTGCCACGCCGAGGTCGCCGGGCCC.........................................................................2611.001010000
.................................................................................................................................................................................................................................TCTTTAATTCGAGAAAAGTGGAGT..2420.501010000
....................................TTCGATGGAATCAAGTCTTGAAAT...............................................................................................................................................................................................24190.051010000
....................................TTCGATGGAATCAAGTCTTGAAATC..............................................................................................................................................................................................25190.051010000
...................................ATTCGATGGAATCAAGTCTTGAAA................................................................................................................................................................................................24200.051000010
.....................................TCGATGGAATCAAGTCTTGAA.................................................................................................................................................................................................21200.051001000
..............................................................ACATGCTTAACAGGTGCTT..........................................................................................................................................................................19200.051010000
droBip1
A----------------------TCGCTCCCAAAGATTTAAAGAAATCAAGTCCCGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGCCAAATCGACTCATTTATATTGAAAAGAAA------------------------AAGTTASizeHit CountTotal NormTotal
No Reads
droRho1
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACACGCTGTCAAGTTTTTTTTGCTAATCGAATA----TCTTTAATTCAAGA------------SizeHit CountTotal NormTotal
No Reads
droBia1
G-----------------------------------------------------------------------------CTTGAAAATAACATTTTTTATTAATTCCGAATTTTAAATTAAATTTTTTTT--------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droWil2
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTTCATTAATCGAAAAAACATTCTCAATT-----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/17/2015 at 11:31 PM