ID:

dan_90

 Coordinate:

scaffold_13340:11049322-11049377 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTGAAAAAGAAATCAACCCTCAACCAACCACAAAGCAATAGAAAAAATAAACAATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAAGAAAAACAACAAATTTGTGTTTTTATTTTCCATTAGAATCGCAATCTAATTAC

***********************************..................(((((((((.((((((.(((((....))))).)))))).)))))))))...................************************************ 		Read size # Mismatch Hit Count Total Norm Total V106

head

 V105

male body		 M044

female body

 M058

embryo

 V055

head

 V039

embryo
...................................................................................TTAAAGCCTTGTATAATTAAGA................................................... 22 0 1 30.00 30 19 10 0 0 1 0
...................................................................................TTAAAGCCTTGTATAATTAAG.................................................... 21 0 1 17.00 17 13 1 3 0 0 0
....................................................................................TAAAGCCTTGTATAATTAAGA................................................... 21 0 1 8.00 8 6 1 0 0 1 0
..................................................AACAATTGTACACGGCTTTCGT.................................................................................... 22 0 1 7.00 7 0 2 4 0 0 1
...................................................................................TTAAAGCCTTGTATAATTAAGT................................................... 22 1 1 5.00 5 3 1 0 0 1 0
....................................................................................TAAAGCCTTGTATAATTAAG.................................................... 20 0 1 5.00 5 5 0 0 0 0 0
..................................................................................ATTAAAGCCTTGTATAATTAA..................................................... 21 0 1 4.00 4 3 0 0 0 1 0
...................................................ACAATTGTACACGGCTTTCGTA................................................................................... 22 0 1 4.00 4 0 1 2 0 1 0
...................................................ACAATTGTACACGGCTTTCGT.................................................................................... 21 0 1 4.00 4 0 2 2 0 0 0
.................................................AAACAATTGTACACGGCTTTC...................................................................................... 21 0 1 3.00 3 0 0 0 3 0 0
..................................................AACAATTGTACACGGCTTTCG..................................................................................... 21 0 1 2.00 2 0 1 0 0 1 0
..................................................AACAATTGTACACGGCTTTC...................................................................................... 20 0 1 2.00 2 0 0 1 1 0 0
..................................................................................ATTAAAGCCTTGTATAATTAAG.................................................... 22 0 1 2.00 2 0 1 1 0 0 0
..................................................AACAATTGTACACGGCTTTCGTT................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...................................................................................TTAAGGCCTTGTATAATTAAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................CACGGCTTTCGTAAAGTGATTT.......................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
..................................................AACAATTGTACATGGCTTTCGTAAAG................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................AAAGCCTTGTATAATTAAGA................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...........AATCAACCCTCAACCAACCACAAA......................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0
........AGAAAGCAACCCTCCACCAA................................................................................................................................ 20 2 1 1.00 1 0 0 0 1 0 0
..................................................AACAATTGTACATGGCTTTCGT.................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
................................................TAAACAATTGTACACGGCTTTCGT.................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
............................................................CACGGCTTTCGTAAAGTGATT........................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
......................................TTAGAAAAAATAAACAATTGTACAC............................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0
......................................ATAGAAAAAATAAACAATTGTACACGAC.......................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0
...............................................................................................ATAATTAAGAAAAACAACAAATTTGTGTT................................ 29 0 1 1.00 1 0 1 0 0 0 0
..........AAATGAACCCTCAACCAA................................................................................................................................ 18 1 1 1.00 1 0 0 0 1 0 0
.................................................AAACAATTGTACACGGCTTTCGT.................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
...................................................................................TTGAAGCCTTGTATAATTAAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
......................................................................GGAAAGTGATTTATTAAAGCCTTGC............................................................. 25 2 1 1.00 1 0 0 0 1 0 0
.................................................................................TATTAAAGCCTTGTATAATT....................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................................AACAATTGTACACGGCTTTCGC.................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...............................................ATAAACAATTGTACACGGC.......................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0
.TTGAAAAAGAAATCAACCCTCAACC.................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0
.............................................AAATAAACAATTGTACACGGC.......................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
....................................................................................TAAAGCCTTGTATAATTAAGTT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
....................................................CAATTGTACACGGCTTTCGT.................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
...................................................ACAATTGTACACAGCTTTCG..................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0
......................................................ATTGTACACGGCTTTCGTA................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................ATAATTAAGAAAAACAACAAATTTGT................................... 26 0 1 1.00 1 0 0 0 1 0 0
....................................................................................TAAAGCCTTGTATAATTAAGT................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................TTAAAGCCTTGTATAATTAA..................................................... 20 0 1 1.00 1 1 0 0 0 0 0
......................................................................GGAAAGTGATTTATTAAAGCCTTGTATA.......................................................... 28 1 1 1.00 1 0 0 0 1 0 0
...................................................................................TTAAAGCCTTGTATAATTAAC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................TAAAGCCTTGTATAATTAAGAAAAA............................................... 25 0 1 1.00 1 0 0 1 0 0 0
...................................................................................TTATAGCCTTGTATCATTAAG.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.................................................AAACAATTGTACACGGCTTTCG..................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................AAAGCCTCGTATAATTAAGA................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..............................................AATAAACAATTGTACACGGCTTTC...................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0
...............................................AGAAACAATTGTACATGGCTTTC...................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0
.....AAAAGAAATCAACCCTCAA.................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
......................................................................GTATAGTGATTTATTAAAGCCTTGT............................................................. 25 1 1 1.00 1 0 0 0 1 0 0
....................................................................................TAAAGCCTTGTATAATTAAGAT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................AACAATTGTACACGGCTTTCAT.................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..............................................AATAAACAATTGTACATGGCTTTCG..................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0
....................................................CAATTGTACACGGCTTTCGTA................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
......................................................................GTAAAGTGATTTATTAAAGCCTTGT............................................................. 25 0 1 1.00 1 0 1 0 0 0 0
.............................................................................GATTTATTAAAGCCTTGC............................................................. 18 1 2 0.50 1 0 0 0 1 0 0
.....GAAAGAAGTCAACCCCCAACC.................................................................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0
...................................................................................TTAAAGCTTTGTATAATTAAC.................................................... 21 2 3 0.33 1 0 0 1 0 0 0
.......AAGAAAACAACCCTCCACC.................................................................................................................................. 19 2 4 0.25 1 0 0 0 1 0 0
........AAAAACCAACCCTCACCCAACC.............................................................................................................................. 22 3 4 0.25 1 0 0 0 1 0 0
...........AATCAACCGTCACCCCACCA............................................................................................................................. 20 3 5 0.20 1 0 0 0 1 0 0
TTAGGAAAAGAAATCAACC......................................................................................................................................... 19 2 5 0.20 1 0 0 0 1 0 0
...................................................................................TTAAAGCTTTGTATAATTAACT................................................... 22 3 6 0.17 1 0 0 0 1 0 0
.....AAAAGAAATCCACCCCCAACGA................................................................................................................................. 22 3 6 0.17 1 0 0 0 0 0 1
..TGAAAAAGGAATCGACCCCC...................................................................................................................................... 20 3 7 0.14 1 0 0 0 1 0 0
...................................................................................TTAAAGCCTTGCATCATTAAGT................................................... 22 3 7 0.14 1 0 0 0 0 1 0
...................................................................TTCGTGGAGTGATTTGTTAA..................................................................... 20 3 14 0.07 1 0 1 0 0 0 0
........AGAAAACAACCCTCCACCAC................................................................................................................................ 20 3 15 0.07 1 0 0 0 1 0 0
.GTGGAAAAGAAATCAACC......................................................................................................................................... 18 2 17 0.06 1 0 0 0 1 0 0
............AACAAACCTCAACCAACCCC............................................................................................................................ 20 3 18 0.06 1 0 0 0 1 0 0
..................CTGCAACCAACCACAAAGGA...................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 1
TGAGGAAAAGAAATCAACC......................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AAACTTTTTCTTTAGTTGGGAGTTGGTTGGTGTTTCGTTATCTTTTTTATTTGTTAACATGTGCCGAAAGCATTTCACTAAATAATTTCGGAACATATTAATTCTTTTTGTTGTTTAAACACAAAAATAAAAGGTAATCTTAGCGTTAGATTAATG

************************************..................(((((((((.((((((.(((((....))))).)))))).)))))))))...................*********************************** 		Read size # Mismatch Hit Count Total Norm Total M044

female body

 V039

embryo
.....................GTTGGTTGGTGTTTCGTTATC.................................................................................................................. 21 0 1 1.00 1 1 0
............TAGTTGGGAGTTGGTCTG.............................................................................................................................. 18 2 3 0.33 1 0 1
......CTTCTTTTGTTGGGAGGTGG.................................................................................................................................. 20 3 14 0.07 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13340:11049272-11049427 - dan_90 confident TTT------GAAAAAG--------AAA-TCAA-CC-CTCA--ACC------AACCACAAAGCAATAGAAA-----------------AAATAAA-CAATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAAGAAAAACAA--------CAAA-TTTGTGTTTTTATTTTCCAT--------------TAGAATCGCAATCTAATTAC-------------
droBip1 scf7180000396374:34264-34410 + AA--------AGAA------------A-T-----CCCTCA--ACC------AACCACAAAGCAATAGAAA-----------------AAATAAA-CAATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAACAAAAACAA--------CAAA-TTTGTGTTTTTATTTTCCATAA--------------GAATCTGAATCTAATTGC-------------
droKik1 scf7180000302247:250347-250529 + GAA-A-CCCCACAA------------AACCAA--C-----CAACC------ATCAACAAAACAATAGAAGA-A-----A-AAAAACAAAATAAA-CAATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAGAAC---AACCAAAA-TTTGTGTTTTTATTTGCCTTATCACGTACACTTTTTCGTTGGCGATTTTATTTT-------------
droFic1 scf7180000454106:2527577-2527750 + CC------CCACAA------------AGCCAA--CCACCA--ACC------AACCACAAAACAATAGAAA--------------AACAAATAAA-CAATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAA----ACCTCCAA-ATTGTGTTTTTATTTGCCTTATCACGTACCATTTTTCGTTTGTAATTTTATTTT-------------
droEle1 scf7180000491212:1154179-1154309 + CCC-------ACAA------------AAGCAT--CCACCA--ACC------AGC-----AACAATAAAA-------------AAAACAAATAAA-CAATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAGA---ACCCCAAA-TTTGTGTTTTTATTT----------------------------------------------------
droRho1 scf7180000778307:14066-14197 + CC--------ACAA------------AACCAA--C-----CAACC------AACATCAAAACAATAGAAA------------AAAACAAATAAA-CAATTGTACACGGCTTTCGTAAAGCAATTTATTGAAGCTTTGTATAATTAACAAAAAAAA----ACCTCAAA-TTTGTGTTTTTATTT----------------------------------------------------
droBia1 scf7180000302402:7353483-7353648 - CA---------CAA------------AACCA-----------ACC------AACAAGAAATCCATAGAAA-------------AA-ACAATAAA-CAATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAAAC--AACCAAAA-TTTGTGTTTTTATTTGCGTTATCACGTACCGTTTTTCGTTGGCAATTTTATTTT-------------
droTak1 scf7180000414009:179086-179254 + CT--------ATAA------------AACCAA--C-----CAACC------AACAAGAAAACAATAGAAA-------------AAACAAATAAA-CAATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAAA-----ACCTCAAA-TTTGTGTTTTTATTTGCGTTATCACGTACAATTTTTCGTTGGCCATTTTATTTT-------------
droEug1 scf7180000409490:80954-81095 + CGAAATCCCCACAA------------AACCAA--C-----CAACC------AACAACAAAACAATAGAAA----------AAAAATCAAATAAA-CAATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAA----ACCTCAAA-TTTGTGTTTTCATTT----------------------------------------------------
dm3 chr3R:4640259-4640391 - dme_421 confident CC------CCACA-------------AACCAA--A-----CAA-C------AACAACAAAACAATAGAAA-------------AAAGAAATAAA-CAATTGTACATGGCTTTCGTAAAGAAATTTATGAAGGCTTTGTATGATTAACCAAAAAAAAA--TCCACAAA-TTTGTGTTTTTATTT----------------------------------------------------
droSim2 3r:16351737-16351874 + dsi_75 confident CC------CCACA-------------AACCAA--A-----CAAC----AACAACAACAAAACAATAGAAA----------AAAAAACAAATAAA-CAATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAAA---TCCTGAAA-TTTGTGTTTTTATTT----------------------------------------------------
droSec2 scaffold_0:17217385-17217557 + dse_1844 confident CC------CCACA-------------AACCAA--A-----CAA-C------AACAACAAAACAATAGAAA----------A-AAAACAAATAAA-CAATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAAA---TTCTGAAA-TTTGTGTTTTTATTTGCGTTATCACGTACAGTTTTTCATTGGCAATTTTAATTC-------------
droYak3 3R:8702154-8702332 - dya_1796 confident GAAAAACCCGTCA-------------AACCA-----------AAC------AACAACAAAACAATAGAAGA---------AAAAAACAAATAAA-CAATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAAAAA--TCCTCAAA-TTTGTGTTTTCATTTGCGTTATCACGTACAGTTTTTCGTTGGCAATTTTAATTC-------------
droEre2 scaffold_4770:16945906-16946088 + der_1521 confident AA----CCCCACA-------------AACCA-----------AAC------AACAACAAAACAATAGAAA------------AAAACAAATAAA-CAATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAAA----TCCTCAAA-TTTGTGTTTTTATTTGCGTTATCACGTACAGTTTTTCGTTGGCAATTTCAATTCCAGAGCTAATCGG
dp5 2:27294877-27295023 - dps_3827 candidate-rescued CTT-------ACA-------------AACCAAATCCA-----TTCAAC---A--GAAAAAACAATAGAAGA-ACAAAAA-AAAAAGAAAATAAA-AAATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAAA--AAACCAAA-TTTGTGTTTTTATTT----------------------------------------------------
droPer2 scaffold_6:2585076-2585224 - dpe_2481 candidate CTT-------ACA-------------AACCAAATCCA-----TTCAAC---A--GAAAAAACAATAGAAGA-ACAAAAA-AAAAAGAAAATAAA-AAATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAAAAAACCCCAAA-TTTGTGTTTTTATTT----------------------------------------------------
droWil2 scf2_1100000004902:4649938-4650083 + dwi_5415 confident TTT------AAAAAATCAAAAC----AACCAA--C-----CAACC---------AACAAAACAATAGAAA------------------AATAAA-CAATTGTACACGGCTTTTATAAAGTAATTTATTAAAGCTTTGTATAATTACCCAAAAAAAAAAACCCAAAAA-TTTTTGTTTTTATTTGT------------------TAGTAGA-------------------------
droVir3 scaffold_13047:1835012-1835159 + dvi_24634 confident AAA------AAGA------------GAAC-AA-CC---CA--ACC------AACA--AAAACAATAGAAAA-AAAAACATAAAAAAAAAATAAATAAATTGTACACGGCTTTCGTAAAGAAATTTATTGAAGCTTTGTATAATTAACAAAAAAAAA-AACCTTGAAC-TTTGTGTTTTTATTTT---------------------------------------------------
droMoj3 scaffold_6540:3761904-3762062 + dmo_3126 candidate TGA------AAGAAA-----GAAGAGATG-AA-CC---CA--ACCAACAACAAAAAAAAACCAATAGAAAAAACTAAAA-AAAAAAAAAATAAA-CAATTGTACACTGCTTTCGTAAAGAAATTTATTGAAGCTTTGTATAATTAAAAAAAAAAA----AACTGAACTTTTGTGTTTTTATTT----------------------------------------------------
droGri2 scaffold_14906:8668148-8668290 + dgr_462 candidate ACT------AAAAAAAAAAAAAAGTGAAC-AA-CC---CA--ACC---------AACAAAACAATAGAAA----------------AAAATAAA-CAATTGTACACGGCTTTCGTAAAGAAATTTATCGAAGCTTTGTATAATTAACCAAAAAAAAACAACCTGATC-TTTGTGTTATTATTT----------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTT------GAAAAAG--------AAA-TCAA-CC-CTCA--ACC------AACCACAAAGCAATAGAAA-----------------AAATAAA-CAATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAAGAAAAACAA--------CAAA-TTTGTGTTTTTATTTTCCAT--------------TAGAATCGCAATCTAATTAC-------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..............................................................................................................................TTAAAGCCTTGTATAATTAAGA.......................................................................................22130.003000011019
..............................................................................................................................TTAAAGCCTTGTATAATTAAG........................................................................................21117.00173000113
...............................................................................................................................TAAAGCCTTGTATAATTAAGA.......................................................................................2118.008000116
............................................................................................AA-CAATTGTACACGGCTTTCGT........................................................................................................................2217.007401020
..............................................................................................................................TTAAAGCCTTGTATAATTAAGT.......................................................................................2215.005000113
...............................................................................................................................TAAAGCCTTGTATAATTAAG........................................................................................2015.005000005
.............................................................................................................................ATTAAAGCCTTGTATAATTAA.........................................................................................2114.004000103
.............................................................................................A-CAATTGTACACGGCTTTCGTA.......................................................................................................................2214.004200110
.............................................................................................A-CAATTGTACACGGCTTTCGT........................................................................................................................2114.004200020
...........................................................................................AAA-CAATTGTACACGGCTTTC..........................................................................................................................2113.003030000
............................................................................................AA-CAATTGTACACGGCTTTCG.........................................................................................................................2112.002000110
............................................................................................AA-CAATTGTACACGGCTTTC..........................................................................................................................2012.002110000
.............................................................................................................................ATTAAAGCCTTGTATAATTAAG........................................................................................2212.002100010
............................................................................................AA-CAATTGTACACGGCTTTCGTT.......................................................................................................................2311.001100000
.......................................................................................................CACGGCTTTCGTAAAGTGATTT..............................................................................................................2211.001000010
................................................................................................................................AAAGCCTTGTATAATTAAGA.......................................................................................2011.001000001
.........................AA-TCAA-CC-CTCA--ACC------AACCACAAA...............................................................................................................................................................................2411.001010000
..........................................................................................TAAA-CAATTGTACACGGCTTTCGT........................................................................................................................2411.001000010
.......................................................................................................CACGGCTTTCGTAAAGTGATT...............................................................................................................2111.001100000
..........................................................................................................................................ATAATTAAGAAAAACAA--------CAAA-TTTGTGTT...........................................................2911.001000010
...........................................................................................AAA-CAATTGTACACGGCTTTCGT........................................................................................................................2311.001100000
............................................................................................................................TATTAAAGCCTTGTATAATT...........................................................................................2011.001000001
............................................................................................AA-CAATTGTACACGGCTTTCGC........................................................................................................................2211.001010000
.........................................................................................ATAAA-CAATTGTACACGGC..............................................................................................................................1911.001010000
.TT------GAAAAAG--------AAA-TCAA-CC-CTCA--ACC------........................................................................................................................................................................................2511.001010000
.......................................................................................AAATAAA-CAATTGTACACGGC..............................................................................................................................2111.001010000
...............................................................................................................................TAAAGCCTTGTATAATTAAGTT......................................................................................2211.001000001
...............................................................................................CAATTGTACACGGCTTTCGT........................................................................................................................2011.001100000
.................................................................................................ATTGTACACGGCTTTCGTA.......................................................................................................................1911.001100000
..........................................................................................................................................ATAATTAAGAAAAACAA--------CAAA-TTTGT..............................................................2611.001010000
...............................................................................................................................TAAAGCCTTGTATAATTAAGT.......................................................................................2111.001000001
..............................................................................................................................TTAAAGCCTTGTATAATTAA.........................................................................................2011.001000001
..............................................................................................................................TTAAAGCCTTGTATAATTAAC........................................................................................2111.001000001
...............................................................................................................................TAAAGCCTTGTATAATTAAGAAAAA...................................................................................2511.001100000
...........................................................................................AAA-CAATTGTACACGGCTTTCG.........................................................................................................................2211.001000010
........................................................................................AATAAA-CAATTGTACACGGCTTTC..........................................................................................................................2411.001010000
...........AAAAG--------AAA-TCAA-CC-CTCA--A................................................................................................................................................................................................1911.001100000
...............................................................................................................................TAAAGCCTTGTATAATTAAGAT......................................................................................2211.001000001
...............................................................................................CAATTGTACACGGCTTTCGTA.......................................................................................................................2111.001100000
.................................................................................................................GTAAAGTGATTTATTAAAGCCTTGT.................................................................................................2511.001000010
........................................................................................................................GATTTATTAAAGCCTTGC.................................................................................................1820.501010000
droBip1
AA--------AGAA------------A-T-----CCCTCA--ACC------AACCACAAAGCAATAGAAA-----------------AAATAAA-CAATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAACAAAAACAA--------CAAA-TTTGTGTTTTTATTTTCCATAA--------------GAATCTGAATCTAATTGC-------------SizeHit CountTotal NormTotal
No Reads
droKik1
GAA-A-CCCCACAA------------AACCAA--C-----CAACC------ATCAACAAAACAATAGAAGA-A-----A-AAAAACAAAATAAA-CAATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAGAAC---AACCAAAA-TTTGTGTTTTTATTTGCCTTATCACGTACACTTTTTCGTTGGCGATTTTATTTT-------------SizeHit CountTotal NormTotal
No Reads
droFic1
CC------CCACAA------------AGCCAA--CCACCA--ACC------AACCACAAAACAATAGAAA--------------AACAAATAAA-CAATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAA----ACCTCCAA-ATTGTGTTTTTATTTGCCTTATCACGTACCATTTTTCGTTTGTAATTTTATTTT-------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCC-------ACAA------------AAGCAT--CCACCA--ACC------AGC-----AACAATAAAA-------------AAAACAAATAAA-CAATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAGA---ACCCCAAA-TTTGTGTTTTTATTT----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CC--------ACAA------------AACCAA--C-----CAACC------AACATCAAAACAATAGAAA------------AAAACAAATAAA-CAATTGTACACGGCTTTCGTAAAGCAATTTATTGAAGCTTTGTATAATTAACAAAAAAAA----ACCTCAAA-TTTGTGTTTTTATTT----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CA---------CAA------------AACCA-----------ACC------AACAAGAAATCCATAGAAA-------------AA-ACAATAAA-CAATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAAAC--AACCAAAA-TTTGTGTTTTTATTTGCGTTATCACGTACCGTTTTTCGTTGGCAATTTTATTTT-------------SizeHit CountTotal NormTotal
No Reads
droTak1
CT--------ATAA------------AACCAA--C-----CAACC------AACAAGAAAACAATAGAAA-------------AAACAAATAAA-CAATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAAA-----ACCTCAAA-TTTGTGTTTTTATTTGCGTTATCACGTACAATTTTTCGTTGGCCATTTTATTTT-------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGAAATCCCCACAA------------AACCAA--C-----CAACC------AACAACAAAACAATAGAAA----------AAAAATCAAATAAA-CAATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAA----ACCTCAAA-TTTGTGTTTTCATTT----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CC------CCACA-------------AACCAA--A-----CAA-C------AACAACAAAACAATAGAAA-------------AAAGAAATAAA-CAATTGTACATGGCTTTCGTAAAGAAATTTATGAAGGCTTTGTATGATTAACCAAAAAAAAA--TCCACAAA-TTTGTGTTTTTATTT----------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

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droSim2
CC------CCACA-------------AACCAA--A-----CAAC----AACAACAACAAAACAATAGAAA----------AAAAAACAAATAAA-CAATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAAA---TCCTGAAA-TTTGTGTTTTTATTT----------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
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................................................................................................AATTGTACATGGCTTTCGTAA......................................................................................................................2111.00100000000000100000
...........................................................................................AAA-CAATTGTACATGGCTTTCG.........................................................................................................................2211.00110000000000000000
..........................................................................................................................TTTATTAAAGCTTTGTATGATTAACCAAAA...................................................................................3011.00100000001000000000
....................................................................................................GTACATGGCTTTCGTAAAGAA..................................................................................................................2111.00100000000100000000
..........................................................................................TAAA-CAATTGTACATGGCTTTC..........................................................................................................................2211.00100010000000000000
..........................................................................................TAAA-CAATTGTACATGGCTTTCGTAAAGAA..................................................................................................................3011.00100000001000000000
.........................................................................................ATAAA-CAATTGTACATGGCT.............................................................................................................................2011.00100010000000000000
........................................................................................................ATGGCTTTCGTAAAGAAATTTATT...........................................................................................................2411.00101000000000000000
..............................................................................................................................TTAAAGCTTTGTATGATTAACCAAAA...................................................................................2611.00100000010000000000
..................................................................................................TTGTACATGGCTTTCGTAAAGAAAT................................................................................................................2511.00100000001000000000
............................................................................................................................TATTAAAGCTTTGTATGATTAAC........................................................................................2311.00100000001000000000
................................................................TAGAAA----------AAAAAACAAAT................................................................................................................................................1711.00100000000001000000
droSec2
CC------CCACA-------------AACCAA--A-----CAA-C------AACAACAAAACAATAGAAA----------A-AAAACAAATAAA-CAATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAAA---TTCTGAAA-TTTGTGTTTTTATTTGCGTTATCACGTACAGTTTTTCATTGGCAATTTTAATTC-------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..............................................................................................................................TTAAAGCTTTGTATGATTAACC.......................................................................................22120.00206446
...............................................................................................................................TAAAGCTTTGTATGATTAACCA......................................................................................2219.0091080
.............................................................................................................................ATTAAAGCTTTGTATGATTAAC........................................................................................2217.0070241
...............................................................................................................................TAAAGCTTTGTATGATTAACC.......................................................................................2116.0060312
..............................................................................................................................TTAAAGCTTTGTATGATTAAC........................................................................................2116.0062202
.............................................................................................A-CAATTGTACATGGCTTTCGT........................................................................................................................2113.0031101
..............................................................................................................................TTAAAGCTTTGTATGATTAACCA......................................................................................2313.0030030
............................................................................................................................TATTAAAGCTTTGTATGATT...........................................................................................2013.0032100
.............................................................................................................................ATTAAAGCTTTGTATGATT...........................................................................................1913.0031110
.....................................................................................................TACATGGCTTTCGTAAAGAAAT................................................................................................................2212.0020002
.....................................................................................................TACATGGCTTTCGTAAAGAAATTTAT............................................................................................................2612.0021001
..............................................................................................................................TTAAAGCTTTGTATGATTAACT.......................................................................................2212.0021001
..............................................................................................................................TTAAAGCTTTGTATGATTAATT.......................................................................................2212.0020002
............................................................................................AA-CAATTGTACATGGCTTTCGT........................................................................................................................2212.0020101
..............................................................................................................................TTAAAGCTTTGTATGATTAAT........................................................................................2112.0020011
.............................................................................................................................ATTAAAGCTTTGTATGAT............................................................................................1812.0020020
............................................................................................................................TATTAAAGCTTTGTATGATTAA.........................................................................................2212.0021100
.............................................................................................................................ATTAAAGCTTTGTATGATTA..........................................................................................2011.0010100
.............................................................................................................................ATTAAAGCTTTGTATGATTAACCA......................................................................................2411.0011000
..............................................................................................................................TTAAAGCTTTGTATGATTAAAA.......................................................................................2211.0010001
..................................................................................................TTGTACATGGCTTTCGTAAAGAAA.................................................................................................................2411.0010001
...........................................................................................AAA-CAATTGTACATGGCTT............................................................................................................................1911.0011000
..............................................................................................................................TTAAAGCTTTGTATGATTAAG........................................................................................2111.0011000
...............................................................................................................................TAAAGCTTTGTATGATTAAC........................................................................................2011.0010001
............................................................................................................................TATTAAAGCTTTGTATGATTACT........................................................................................2311.0010100
...........................................................................................................................TTATTAAAGCTTTGTATGATT...........................................................................................2111.0011000
..............................................................AATAGAAA----------A-AAAACAAATAAA-CAATT.......................................................................................................................................2611.0010001
.....................................................................................................TACATGGCTTTCGTAAAGAAATT...............................................................................................................2311.0010001
.............................................................................................................................ATTAAAGCTTTGTATGATTAAA........................................................................................2211.0010001
.................................................................................................ATTGTACATGGCTTTCGTAAAGAA..................................................................................................................2411.0010100
.......................................................................................................................AAATTTATTAAAGCTTTGTATGA.............................................................................................2311.0010010
....................................................................................................................AAGAAATTTATTAAAGCTTTG..................................................................................................2111.0010100
............................................................................................................................TATTAAAGCTTTGTATGATTAC.........................................................................................2211.0011000
............................................................................................................................TATTAAAGCTTTGTATGATTA..........................................................................................2111.0011000
....................................................................................................GTACATGGCTTTCGTAAAGA...................................................................................................................2011.0011000
...............................................................................................CAATTGTACATGGCTTTCGT........................................................................................................................2011.0010100
........................................................................................................................AATTTATTAAAGCTTTGTATGATTAACC.......................................................................................2811.0010001
................................................................................................AATTGTACATGGCTTTCGT........................................................................................................................1911.0010100
...............................................................................................................................TAAAGCTTTGTATGATTAACA.......................................................................................2111.0010100
.................................................................................................ATTGTACATGGCTTTCGT........................................................................................................................1811.0010010
........................................................................................AATAAA-CAATTGTACATGGCTTTCGT........................................................................................................................2611.0010100
..............................................................................................................................TTAAAGCTTTGTATGATT...........................................................................................1811.0010001
................................................................................................................................AAAGCTTTGTATGATTAACT.......................................................................................2011.0010001
...........................................................................................AAA-CAATTGTACATGGCTTTCGT........................................................................................................................2311.0010010
............................................................................................AA-CAATTGTACATGGCTTTCGTA.......................................................................................................................2311.0010100
............................................................................................................................TATTAAAGCTTTGTATGATTTT.........................................................................................2211.0010100
.................................................................................................ATTGTACATGGCTTTCGTAAAGAAAT................................................................................................................2611.0010100
............................................................................................................................TATTAAAGCTTTGTATGATTT..........................................................................................2111.0010001
....................................................................................................................AAGAAATTTATTAAAGCTTTGTATGAT............................................................................................2711.0011000
.....................................................................................................TACATGGCTTTCGTAAAG....................................................................................................................1811.0010001
...............................................................................................................................TAAAGCTTTGTATGATTAACCAAAAAA.................................................................................2711.0010010
.....................................................................................................TACATGGCTTTCGTAAAGAAATTT..............................................................................................................2411.0010001
...............................................................................................................................TAAAGCTTTGTATGATTAATGG......................................................................................2220.5010001
............................................................................................................................TATTAAAGCTTTGTATGAAA...........................................................................................2040.2510100
...............................................................................................................................TAAAGCTTTGTATGATTAAAGT......................................................................................2260.1710001
droYak3
GAAAAACCCGTCA-------------AACCA-----------AAC------AACAACAAAACAATAGAAGA---------AAAAAACAAATAAA-CAATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAAAAA--TCCTCAAA-TTTGTGTTTTCATTTGCGTTATCACGTACAGTTTTTCGTTGGCAATTTTAATTC-------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................................................................................................TTAAAGCTTTGTATAATTAACC.......................................................................................22127.002786911020000
.....................................................................................................................AGTAATTTATTAAAGCTTTGT.................................................................................................2117.00701000060000
...............................................................................................................................TAAAGCTTTGTATAATTAACC.......................................................................................2116.00622000020000
...............................................................................................................................TAAAGCTTTGTATAATTAACCA......................................................................................2216.00604000200000
..............................................................................................................................TTAAAGCTTTGTATAATTAACT.......................................................................................2216.00632000010000
............................................................................................AA-CAATTGTACATGGCTTTCGT........................................................................................................................2214.00401200010000
..............................................................................................................................TTAAAGCTTTGTATAATTAAC........................................................................................2113.00302000100000
.............................................................................................................................ATTAAAGCTTTGTATAATTAAC........................................................................................2213.00301100100000
..................................................................................................TTGTACATGGCTTTCGTAAAGT...................................................................................................................2212.00200000110000
............................................................................................................................TATTAAAGCTTTGTATAATT...........................................................................................2012.00202000000000
.................................................................................................................GTAAAGTAATTTATTAAAGCTTTGT.................................................................................................2512.00200000020000
................................................................................................AATTGTACATGGCTTTCGTAA......................................................................................................................2112.00201000010000
...............................................................................................................................TAAAGCTTTGTATAATTAAC........................................................................................2012.00201100000000
.............................................................................................A-CAATTGTACATGGCTTTCGTA.......................................................................................................................2212.00202000000000
.....................................................................................................TACATGGCTTTCGTAAAGTAATTT..............................................................................................................2412.00202000000000
.............................................................................................A-CAATTGTACATGGCTTTCGT........................................................................................................................2112.00202000000000
........................................................................................AATAAA-CAATTGTACATGGCTTTCGT........................................................................................................................2612.00201000010000
...............................................................................................CAATTGTACATGGCTTTCGTAA......................................................................................................................2212.00201000010000
GAAAAACCCGTCA-------------AACCA-----------AA...............................................................................................................................................................................................2011.00101000000000
.................................................................................................ATTGTACATGGCTTTCGT........................................................................................................................1811.00100001000000
.............................................................................................A-CAATTGTACATGGCTTTC..........................................................................................................................1911.00101000000000
.................................................................................................................................AAGCTTTGTATAATTAACCAAA....................................................................................2211.00101000000000
.........................................................................................................................ATTTATTAAAGCTTTGTATA..............................................................................................2011.00100000010000
...................................................................................................................AAAGTAATTTATTAAAGCTTTGT.................................................................................................2311.00100000010000
............................................................................................AA-CAATTGTACATGGCTTTCG.........................................................................................................................2111.00100001000000
................................................................................................................................AAAGCTTTGTATAATTAACCA......................................................................................2111.00100000010000
.......................................................................................AAATAAA-CAATTGTACATGGCTTTC..........................................................................................................................2511.00100100000000
........................................................................................AATAAA-CAATTGTACATGGCTTTC..........................................................................................................................2411.00101000000000
....AACCCGTCA-------------AACCA-----------AAC------AACAACAAAAC.............................................................................................................................................................................2811.00101000000000
...........................................................................................AAA-CAATTGTACATGGCTTTC..........................................................................................................................2111.00101000000000
..............................................................................................................................TTAAAGCTTTGTATAATTAACCT......................................................................................2311.00101000000000
...........................................................................................AAA-CAATTGTACATGGCTTTCGT........................................................................................................................2311.00100000010000
..............................................................................................................................TTAAAGCTTTGTATAATTAA.........................................................................................2011.00101000000000
...................................................................................................................................GCTTTGTATAATTAACCAAAAAAAA...............................................................................2511.00101000000000
.....................................................................................ACAAATAAA-CAATTGTACATGGC..............................................................................................................................2311.00101000000000
.AAAAACCCGTCA-------------AACCA-----------AAC------........................................................................................................................................................................................2011.00100000010000
.............................................................................................................................ATTAAAGCTTTGTATAATTAA.........................................................................................2111.00101000000000
................................................................................................AATTGTACATGGCTTTCGTAT......................................................................................................................2111.00101000000000
.......................................................................................................................TAATTTATTAAAGCTTTGTATA..............................................................................................2211.00100000010000
.................................................................................................................GTAAAGTAATTTATTAAAGCTTTGTATA..............................................................................................2811.00101000000000
.............................................................................................................................ATTAAAGCTTTGTATAATC...........................................................................................1911.00100100000000
......................................................................................................................GTAATTTATTAAAGCTTTGT.................................................................................................2011.00100000010000
...........................................................................................AAA-CAATTGTACATGGCT.............................................................................................................................1811.00100100000000
...............................................................................................CAATTGTACATGGCTTTCGTC.......................................................................................................................2111.00101000000000
.......................................................................................AAATAAA-CAATTGTACAT.................................................................................................................................1811.00101000000000
.............................................................................................................................ATTAAAGCTTTGTATAATTAACC.......................................................................................2311.00100100000000
............................................................................................AA-CAATTGTACATGGCTTTC..........................................................................................................................2011.00100100000000
........................................................................................................................................................................TTTGTGTTTTCATTTGCGTT...............................................2011.00100000010000
........................................................................................................................AATTTATTAAAGCTTTGT.................................................................................................1811.00100010000000
.................................................................................................................................AAGCTTTGTATAATTAACCA......................................................................................2011.00101000000000
.........................................................................................ATAAA-CAATTGTACATGGCTTTC..........................................................................................................................2311.00100100000000
....................................................................................................................AAGTAATTTATTAAAGCTTTGT.................................................................................................2211.00100000010000
.........................................................................................ATAAA-CAATTGTACATGGCTTTCG.........................................................................................................................2411.00100000010000
droEre2
AA----CCCCACA-------------AACCA-----------AAC------AACAACAAAACAATAGAAA------------AAAACAAATAAA-CAATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAAA----TCCTCAAA-TTTGTGTTTTTATTTGCGTTATCACGTACAGTTTTTCGTTGGCAATTTCAATTCCAGAGCTAATCGGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................................................................TTAAAGCTTTGTATAATTAACC.......................................................................................22159.0059943111310
...............................................................................................................................TAAAGCTTTGTATAATTAACC.......................................................................................21127.002702005200
...............................................................................................................................TAAAGCTTTGTATAATTAACCA......................................................................................22121.002150104110
..............................................................................................................................TTAAAGCTTTGTATAATTAACT.......................................................................................22117.001711202110
.............................................................................................A-CAATTGTACATGGCTTTCGTA.......................................................................................................................22110.00101012330
.............................................................................................A-CAATTGTACATGGCTTTCGT........................................................................................................................2119.0091010610
..............................................................................................................................TTAAAGCTTTGTATAATTAACCA......................................................................................2316.0060100140
............................................................................................AA-CAATTGTACATGGCTTTCGT........................................................................................................................2216.0061000410
..............................................................................................................................TTAAAGCTTTGTATAATTAAC........................................................................................2115.0051000220
.....................................................................................................................AGTAATTTATTAAAGCTTTGT.................................................................................................2115.0051000400
......................................................................................................................GTAATTTATTAAAGCTTTGT.................................................................................................2014.0040000400
.............................................................................................A-CAATTGTACATGGCTTTCG.........................................................................................................................2014.0041000210
...............................................................................................CAATTGTACATGGCTTTCGT........................................................................................................................2013.0031000110
............................................................................................................................TATTAAAGCTTTGTATAATT...........................................................................................2013.0030000030
..............................................................................................................TTCGTAAAGTAATTTATTAAAGCTTTG..................................................................................................2713.0033000000
...............................................................................................CAATTGTACATGGCTTTCGTA.......................................................................................................................2113.0031000110
..............................................................................................................................TTAAAGCTTTGTATAATTAACCT......................................................................................2313.0031000020
...............................................................................................................................TAAAGCTTTGTATAATTAAC........................................................................................2013.0030000030
...........................................................................................AAA-CAATTGTACATGGCTTTC..........................................................................................................................2113.0030201000
...........................................................................................AAA-CAATTGTACATGGCTTTCGT........................................................................................................................2313.0031010100
...............................................................................................................................TAAAGCTTTGTATAATTAACCAA.....................................................................................2312.0022000000
...................................................................................................TGTACATGGCTTTCGTAAAGTAATTTATT...........................................................................................................2912.0021000100
..................................................................................................TTGTACATGGCTTTCGTAAAGTAATT...............................................................................................................2612.0021000100
...............................................................................................................................TAAAGCTTTGTATAATTAACT.......................................................................................2112.0021000010
..............................................................................................................................TTAAAGCTTTGTATAATTAACA.......................................................................................2212.0020000020
.............................................................................................................................ATTAAAGCTTTGTATAATTAAC........................................................................................2212.0021000100
...........................................................................................AAA-CAATTGTACATGGCTTTCG.........................................................................................................................2212.0020000110
............................................................................................AA-CAATTGTACATGGCTTTCGTAAAG....................................................................................................................2612.0022000000
..................................................................................................TTGTACATGGCTTTCGTAAAGTAAT................................................................................................................2512.0021010000
.....................................................................................................TACATGGCTTTCGTAAAGTAATTTATT...........................................................................................................2712.0021000010
................................................................................................................................AAAGCTTTGTATAATTAACCA......................................................................................2112.0020000020
.................................................................................................................GTAAAGTAATTTATTAAAGCTTTGT.................................................................................................2512.0020000200
.........CACA-------------AACCA-----------AAC------AACAACAAAACAA...........................................................................................................................................................................2512.0022000000
.....................................................................................................TACATGGCTTTCGTAAAGTAAT................................................................................................................2212.0020010010
...............................................................................................................................TAAAGCTTTGTATAATTAACTT......................................................................................2211.0010000010
...........................................................................................................................TTATTAAAGCTTTGTATAATTAACCAA.....................................................................................2711.0011000000
................................................................................................AATTGTACATGGCTTTCGT........................................................................................................................1911.0010001000
........................................................................................AATAAA-CAATTGTACATGGCTTTCGT........................................................................................................................2611.0010000100
.................................................................................................................................AAGCTTTGTATAATTAACC.......................................................................................1911.0010000010
...............................................................................................................................TAAAGCTTTGTATAATTA..........................................................................................1811.0010000010
..............................................................................................................................TTAAAGCTTTGTATAATTA..........................................................................................1911.0010000010
.....................................................................................................TACATGGCTTTCGTAAAGT...................................................................................................................1911.0010000010
.....................................................................................................................AGTAATTTATTAAAGCTTTGTAT...............................................................................................2311.0010000100
..........................AACCA-----------AAC------AACAACAAAACAATAGAAA------------.........................................................................................................................................................2711.0011000000
.....................................................................................................TACATGGCTTTCGTAAAGTA..................................................................................................................2011.0010000100
........................................................................................AATAAA-CAATTGTACATGGT..............................................................................................................................2011.0010001000
...............................................................................................CAATTGTACATGGCTTTCGTT.......................................................................................................................2111.0010000100
...........................................................................................................................TTATTAAAGCTTTGTATAATTAAC........................................................................................2411.0010000100
..........................AACCA-----------AAC------AACAACAAAACAATAGAAA------------A........................................................................................................................................................2811.0011000000
....................................................................................................................AAGTAATTTATTAAAGCTTTGTATAAT............................................................................................2711.0010000100
...............................................................................................CAATTGTACATGGCTTTCGTAA......................................................................................................................2211.0011000000
..................................................................................................TTGTACATGGCTTTCGTAAA.....................................................................................................................2011.0011000000
..........................................................................................................................TTTATTAAAGCTTTGTATAATT...........................................................................................2211.0011000000
..........................................................................................TAAA-CAATTGTACATGGCTTTCGTA.......................................................................................................................2511.0011000000
...................................................................................AAACAAATAAA-CAATTGTACATGGCTTTC..........................................................................................................................2911.0011000000
......CCCCACA-------------AACCA-----------AAC------AACAACAAAACA............................................................................................................................................................................2711.0010100000
......CCCCACA-------------AACCA-----------AAC------AACAACAAAACAA...........................................................................................................................................................................2811.0011000000
............................................................................................AA-CAATTGTACATGGCTTTC..........................................................................................................................2011.0010000010
....................................................................................................................AAGTAATTTATTAAAGCTTTGT.................................................................................................2211.0010000010
.............................................................................................................................ATTAAAGCTTTGTATAATTAACCAAAA...................................................................................2711.0010000010
...........................................................................................................................TTATTAAAGCTTTGTATAATTAACC.......................................................................................2511.0010000010
.............................................................................................................TTTCGTAAAGTAATTTATTAAAGC......................................................................................................2411.0011000000
.............................................................................................................................ATTAAAGCTTTGTATAATTAACCA......................................................................................2411.0010000100
...............................................................................................CAATTGTACATGGCTTTCGTAAA.....................................................................................................................2311.0010000010
..........................AACCA-----------AAC------AACAACAAAACAATAGAA......................................................................................................................................................................2611.0011000000
....................................................................................AACAAATAAA-CAATTGTACATGGCT.............................................................................................................................2511.0011000000
.............................................................................................A-CAATTGTACATGGCTTTC..........................................................................................................................1911.0010100000
..............................................................................................................TTCGTAAAGTAATTTATTAAAGCTTTGT.................................................................................................2811.0011000000
......................................................................................................ACATGGCTTTCGTAAAGTAATTT..............................................................................................................2311.0011000000
......................................................................................................ACATGGCTTTCGTAAAGTAAT................................................................................................................2111.0011000000
.......................................................................................AAATAAA-CAATTGTACATGGCTTTC..........................................................................................................................2511.0010100000
...................................................................................AAACAAATAAA-CAATTGTACATGGC..............................................................................................................................2511.0011000000
..........................AACCA-----------AAC------AACAACAAAACAATAGA.......................................................................................................................................................................2511.0011000000
.........................................................................................................TGGCTTTCGTAAAGTAATTTATTAAAGC......................................................................................................2811.0011000000
.........................................................................................ATAAA-CAATTGTACATGGCTTTC..........................................................................................................................2311.0011000000
...........................................................................................................................TTATTAAAGCTTTGTATAATTA..........................................................................................2211.0010000010
.............................................................................................................................ATTAAAGCTTTGTATAATT...........................................................................................1911.0010000100
.....................................................................................................TACATGGCTTTCGTAAAGTAATTTAT............................................................................................................2611.0011000000
................................................................................................................................AAAGCTTTGTATAATTAACCAAA....................................................................................2311.0010000010
.................................................................................................................................AAGCTTTGTATAATTAACCA......................................................................................2011.0010000010
............................................................................................................................TATTAAAGCTTTGTATAATTA..........................................................................................2111.0011000000
..............................................................................................................................TTAAAGCTTTGTATAATTAA.........................................................................................2011.0011000000
....................................................................................AACAAATAAA-CAATTGTACATGGCTT............................................................................................................................2611.0011000000
...............................................................................................................................TAAAGCTTTGTATAATTAACA.......................................................................................2111.0010000010
..................................................................................AAAACAAATAAA-CAATTGTACATGGCT.............................................................................................................................2711.0011000000
...................................................................................................TGTACATGGCTTTCGTAAAGTAATT...............................................................................................................2511.0011000000
AA----CCCCACA-------------AACCA-----------AAC------AACAACAAAACA............................................................................................................................................................................2911.0011000000
..........................................................................................TAAA-CAATTGTACATGGCTTTCG.........................................................................................................................2311.0010000010
.............................................................................................................................ATTAAAGCTTTGTATAATTAACT.......................................................................................2311.0010000010
..........................................................................................TAAA-CAATTGTACATGGCTTTCGT........................................................................................................................2411.0010000001
........................................................................................AATAAA-CAATTGTACATGGCT.............................................................................................................................2111.0011000000
....................................................................................................GTACATGGCTTTCGTAAAGTAATT...............................................................................................................2411.0011000000
.......................................................................................AAATAAA-CAATTGTACATGGCTTTCGT........................................................................................................................2711.0011000000
................................................................................................AATTGTACATGGCTTTCGTA.......................................................................................................................2011.0010001000
.............................................................................................................................ATTAAAGCTTTGTATAATTAGT........................................................................................2220.5010000100
dp5
CTT-------ACA-------------AACCAAATCCA-----TTCAAC---A--GAAAAAACAATAGAAGA-ACAAAAA-AAAAAGAAAATAAA-AAATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAAA--AAACCAAA-TTTGTGTTTTTATTT----------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................................................AAATTGTACACGGCTTTTATGA......................................................................................................................2213.0030110000001
...............................................................................................AAATTGTACACGGCTTTTATG.......................................................................................................................2113.0030300000000
.................................................................................................................................AAGCTTTGTATGATTAAACT......................................................................................2012.0020200000000
...............................................................................................AAATTGTACACGGCTTTTAT........................................................................................................................2012.0020200000000
.............................................................................................................................GTTAAAGCTTTGTATGATTAAA........................................................................................2212.0020200000000
............................................................................................................................TGTTAAAGCTTTGTATGATT...........................................................................................2011.0010000100000
.....................................................................................................TACACGGCTTTTATGAAGTAATTTGC............................................................................................................2611.0010010000000
.................................TCCA-----TTCAAC---A--GAAAAAACAATAGAAG.....................................................................................................................................................................2711.0010100000000
.............................................................................................................TTTTATGAAGTAATTTGTTA..........................................................................................................2011.0010100000000
..........................................TTCAAC---A--GAAAAAACAATAGAAGA-ACA................................................................................................................................................................2711.0010100000000
......................................................................................AAAATAAA-AAATTGTACACGGC..............................................................................................................................2211.0010010000000
..............................................................................................................................TTAAAGCTTTGTATGATTAAAC.......................................................................................2211.0010100000000
...............................................................................................................TTATGAAGTAATTTGTTAAA........................................................................................................2011.0010100000000
.............................................................................................A-AAATTGTACACGGCTTTTATG.......................................................................................................................2211.0010100000000
..............................................................................................................................TTAAAGCTTTGTATGATTAAACA......................................................................................2311.0010000000001
...............................................................................................................................TAAAGCTTTGTATGATTAA.........................................................................................1911.0010100000000
.................................................................................................................................AAGCTTTGTATGATTAAAC.......................................................................................1911.0010000010000
.......................................................................................................................TAATTTGTTAAAGCTTTGTATGA.............................................................................................2311.0010000100000
.............................................AAC---A--GAAAAAACAATAGAAGA-AC.................................................................................................................................................................2311.0010100000000
..............................................................................................................................TTAAAGCTTTGTATGATTT..........................................................................................1911.0010100000000
..........................................................................................................................TTTGTTAAAGCTTTGTATGATT...........................................................................................2211.0010100000000
.................................................................................................ATTGTACACGGCTTTTATGA......................................................................................................................2011.0010010000000
................................................................................................................................AAAGCTTTGTATGATTAAA........................................................................................1911.0010000100000
...........................................................................................................................TTGTTAAAGCTTTGTATGATT...........................................................................................2111.0010100000000
.........................................................................................ATAAA-AAATTGTACACGGCT.............................................................................................................................2011.0010000010000
...........................................................................................AAA-AAATTGTACACGGCT.............................................................................................................................1811.0010000100000
.............................................................................................................................GTTAAAGCTTTGTATGATTA..........................................................................................2011.0010000001000
...............................................................................................................................TAAAGCTTTGTATGATTAAAC.......................................................................................2111.0010000000001
droPer2
CTT-------ACA-------------AACCAAATCCA-----TTCAAC---A--GAAAAAACAATAGAAGA-ACAAAAA-AAAAAGAAAATAAA-AAATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAAAAAACCCCAAA-TTTGTGTTTTTATTT----------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
............................................................................................................................TGTTAAAGCTTTGTATGATTAAACAAA....................................................................................2711.001010000
..............................................................................................................................TTAAAGCTTTGTATGATTAAAC.......................................................................................2211.001010000
..T-------ACA-------------AACCAAATCCA-----TTCAAC---A--.....................................................................................................................................................................................2211.001010000
.........................................................................................................................ATTTGTTAAAGCTTTGTATGAT............................................................................................2211.001000001
............................................................................................................................TGTTAAAGCTTTGTATGATT...........................................................................................2011.001010000
..............................................................................................................TTTATGAAGTAATTTGTTAAAGC......................................................................................................2311.001001000
.........................................................................................................................ATTTGTTAAAGCTTTGTATGATTA..........................................................................................2411.001000010
...................................................................................................................................................CAAAAAAAAAAAACCCCAAA-...................................................................2020.501010000
droWil2
TTT------AAAAAATCAAAAC----AACCAA--C-----CAACC---------AACAAAACAATAGAAA------------------AATAAA-CAATTGTACACGGCTTTTATAAAGTAATTTATTAAAGCTTTGTATAATTACCCAAAAAAAAAAACCCAAAAA-TTTTTGTTTTTATTTGT------------------TAGTAGA-------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...............................................................................................................................TAAAGCTTTGTATAATTACCC.......................................................................................21131.0031204052
..............................................................................................................................TTAAAGCTTTGTATAATTACCC.......................................................................................22130.0030202044
..............................................................................................................................TTAAAGCTTTGTATAATTACC........................................................................................21125.0025171043
...............................................................................................................................TAAAGCTTTGTATAATTACCCA......................................................................................22122.002207087
...............................................................................................................................TAAAGCTTTGTATAATTACC........................................................................................20112.001240125
............................................................................................AA-CAATTGTACACGGCTTTTAT........................................................................................................................2217.00710042
.............................................................................................A-CAATTGTACACGGCTTTTATA.......................................................................................................................2216.00601032
.............................................................................................................................ATTAAAGCTTTGTATAATTACC........................................................................................2216.00640020
..............................................................................................................................TTAAAGCTTTGTATAATTACT........................................................................................2114.00420011
..................................................................................................TTGTACACGGCTTTTATAAAGT...................................................................................................................2213.00310002
.............................................................................................A-CAATTGTACACGGCTTTTAT........................................................................................................................2113.00302001
..............................................................................................................................TTAAAGCTTTGTATAATTACCT.......................................................................................2213.00330000
.............................................................................................................................ATTAAAGCTTTGTATAATTACT........................................................................................2213.00311100
.....................................................................................................................AGTAATTTATTAAAGCTTTGT.................................................................................................2112.00200020
..............................................................................................................................TTAAAGCTTTGTATAATTACG........................................................................................2112.00200002
...............................................................................................................................TAAAGCTTTGTATAATTACCT.......................................................................................2112.00220000
.........................................................................................ATAAA-CAATTGTACACGGCT.............................................................................................................................2012.00200020
...............................................................................................................................TAAAGCTTTGTATAATTACA........................................................................................2012.00200002
.........................................................................................ATAAA-CAATTGTACACGGCTT............................................................................................................................2112.00201010
........................................................................................AATAAA-CAATTGTACACGGCTT............................................................................................................................2212.00200200
...............................................................................................CAATTGTACACGGCTTTTATA.......................................................................................................................2111.00101000
...............................................................................................................................TAAAGCTTTGTATAATTACCA.......................................................................................2111.00100001
.............AATCAAAAC----AACCAA--C-----CAACC---------AACA.................................................................................................................................................................................2511.00101000
.......................................................ACAAAACAATAGAAA------------------AATAAA-CAAT........................................................................................................................................2511.00101000
....................................................................................................................................CTTTGTATAATTACCCAAA....................................................................................1911.00101000
..................................................................................................TTGTACACGGCTTTTATAAAGTAATT...............................................................................................................2611.00100001
................................................................................................AATTGTACACGGCTTTTAT........................................................................................................................1911.00100010
................................................................................................................................AAAGCTTTGTATAATTACC........................................................................................1911.00100010
..............................................................................................................................TTAAAGCTTTGTATAATTAC.........................................................................................2011.00110000
................................................................................................................................AAAGCTTTGTATAATTACCCT......................................................................................2111.00101000
............................................................................................AA-CAATTGTACACGGCTTTT..........................................................................................................................2011.00101000
...........................................................................................AAA-CAATTGTACACGGCTTTTAT........................................................................................................................2311.00100010
.............................................................................................................................ATTAAAGCTTTGTATAATTACCC.......................................................................................2311.00100010
................CAAAAC----AACCAA--C-----CAACC---------AACAA................................................................................................................................................................................2311.00100100
...............................................................................................................................TAAAGCTTTGTATAATTACCCAA.....................................................................................2311.00100010
.........................................................................................................................ATTTATTAAAGCTTTGTATAATTACC........................................................................................2611.00101000
..T------AAAAAATCAAAAC----AACCAA--C-----CAAC...............................................................................................................................................................................................2511.00101000
............................................................................................................................TATTAAAGCTTTGTATAATTACA........................................................................................2311.00100010
................................................................................................................................AAAGCTTTGTATAATTACCC.......................................................................................2011.00100010
...........AAAATCAAAAC----AACCAA--C-----CAACC---------AAC..................................................................................................................................................................................2611.00101000
..........................................................................................TAAA-CAATTGTACACGGCTT............................................................................................................................2011.00100010
..................................................................................................TTGTACACGGCTTTTATAAAGTAAT................................................................................................................2511.00100001
...................................................................AAA------------------AATAAA-CAATTGTACACGGCTTT...........................................................................................................................2611.00100010
................................................................TAGAAA------------------AATAAA-CAATTGTACACGGCT.............................................................................................................................2711.00101000
.................................................................................................................................AAGCTTTGTATAATTACCCA......................................................................................2011.00100010
............................................................................................................................TATTAAAGCTTTGTATAATTACT........................................................................................2311.00100010
...........................................................AACAATAGAAA------------------AATAAA-CAATTGTACA..................................................................................................................................2711.00101000
.............................................................................................................................ATTAAAGCTTTGTATAAT............................................................................................1811.00100010
............................................................................................................................TATTAAAGCTTTGTATAATTAC.........................................................................................2211.00100010
..................................................................................................TTGTACACGGCTTTTATAAAGTA..................................................................................................................2311.00110000
....................................................................................................GTACACGGCTTTTATAAAGTAATTT..............................................................................................................2511.00101000
...............................................................................................................................TAAAGCTTTGTATAATTACCCT......................................................................................2211.00110000
..........................................................................................................................TTTATTAAAGCTTTGTATAATTACC........................................................................................2511.00100010
..................................................................................................TTGTACACGGCTTTTATAA......................................................................................................................1911.00101000
...........................................................................................................................TTATTAAAGCTTTGTATAATTACC........................................................................................2411.00110000
....................................................................AA------------------AATAAA-CAATTGTACACGGCT.............................................................................................................................2311.00100010
...............................................................................................................................TAAAGCTTTGTATAATTAC.........................................................................................1911.00100001
............................................................................................................................TATTAAAGCTTTGTATAATT...........................................................................................2011.00100010
..................................................................................................TTGTACACGGCTTTTATAAAG....................................................................................................................2111.00101000
...............................................................................................................................TAAAGCTTTGTATAATTACCTT......................................................................................2211.00100001
...........AAAATCAAAAC----AACCAA--C-----CAACC---------AACA.................................................................................................................................................................................2711.00101000
................................................................................................................................AAAGCTTTGTATAATTACCCA......................................................................................2111.00101000
.................................................................................................ATTGTACACGGCTTTTATA.......................................................................................................................1911.00100010
....................................................................................................................AAGTAATTTATTAAAGCTTTGT.................................................................................................2211.00100010
..............................................................................................................................TTAAAGCTTTGTATAATTACA........................................................................................2111.00100001
................................................................TAGAAA------------------AATAAA-CAATTGTACACGGC..............................................................................................................................2611.00101000
...............................................................................................................................TAAAGCTTTGTATAATTACCG.......................................................................................2111.00100001
..............................................................................................................................TTAAAGCTTTGTATAATTACCA.......................................................................................2211.00100001
.........................................................................................ATAAA-CAATTGTACACGGCTTTT..........................................................................................................................2311.00100010
............................................................................................................................TATTAAAGCTTTGTATAATTATT........................................................................................2320.50110000
..............................................................................................................................TTAAAGCTTTGTATAATTACTT.......................................................................................2220.50100001
..............................................................................................................................TTAAAGCTTTGTATAATTATT........................................................................................2150.20100001
.............................................................................................................................ATTAAAGCTTTGTATAATTATT........................................................................................2250.20101000
droVir3
AAA------AAGA------------GAAC-AA-CC---CA--ACC------AACA--AAAACAATAGAAAA-AAAAACATAAAAAAAAAATAAATAAATTGTACACGGCTTTCGTAAAGAAATTTATTGAAGCTTTGTATAATTAACAAAAAAAAA-AACCTTGAAC-TTTGTGTTTTTATTTT---------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..............................................................................................................................TTGAAGCTTTGTATAATTAACA.......................................................................................22124.00240030000000000012010100000001310000000001000000000000000000001200000010240000000
...............................................................................................................................TGAAGCTTTGTATAATTAACA.......................................................................................2119.0090021000000000020000000101000000100000000000000001000000000000000000000000000000
..............................................................................................................................TTGAAGCTTTGTATAATTAAC........................................................................................2117.0070100000000000000000000000000000000000010000000000000000000002100000000011000000
..............................................................................................................................TTGAAGCTTTGTATAATTAACT.......................................................................................2217.0070100000000000000000000000000001000000000000000000010000000000000000003010000000
.............................................................................................ATAAATTGTACACGGCTTTCG.........................................................................................................................2116.0060110100000000000000000000000010001000000000000000000000000000000000001000000000
..............................................................................................TAAATTGTACACGGCTTTCGT........................................................................................................................2115.0050010000000000000000000002000001000000000000000000000000000001000000000000000000
..............................................................................................................................TTGAAGCTTTGTATAATTAACC.......................................................................................2215.0050000000000000000000001000000000000000001000000000000000000000000000030000000000
.............................................................................................ATAAATTGTACACGGCTTTCGT........................................................................................................................2213.0030010000000000000000000000000100100000000000000000000000000000000000000000000000
..........................................................................................................................TTTATTGAAGCTTTGTATAATTAACA.......................................................................................2613.0030000000000000010000000000000000000000000000000000000000000000001000001000000000
..............................................................................................................................TTGAAGCTTTGTATAATTA..........................................................................................1913.0030000000000000000000000100000000000000000000000000000000000002000000000000000000
.............................................................................................................................ATTGAAGCTTTGTATAAT............................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000020000000
...............................................................................................AAATTGTACACGGCTTTCGTA.......................................................................................................................2112.0020010000000000000010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ATTGAAGCTTTGTATAATTAA.........................................................................................2112.0020010000000000010000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ATTGAAGCTTTGTATAATTA..........................................................................................2012.0020000000000000000000000100000100000000000000000000000000000000000000000000000000
..............................................................................................TAAATTGTACACGGCTTTCGTA.......................................................................................................................2212.0020000000000000000010010000000000000000000000000000000000000000000000000000000000
................................................................................................AATTGTACACGGCTTTCGT........................................................................................................................1912.0020000010000000000000000000001000000000000000000000000000000000000000000000000000
....................................................................................................................AAGAAATTTATTGAAGCTTTGT.................................................................................................2212.0020010000000000000000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................TGAAGCTTTGTATAATTAAC........................................................................................2012.0020000000000000000010000100000000000000000000000000000000000000000000000000000000
..................................................................................AAAAAAAATAAATAAATTGTACACGGC..............................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000200000000
............................................................................................................................TATTGAAGCTTTGTATAATTA..........................................................................................2112.0020010000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................ATAAATAAATTGTACACGGCTT............................................................................................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
..A------AAGA------------GAAC-AA-CC---CA--ACC------AACA--..................................................................................................................................................................................2211.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
...........................AC-AA-CC---CA--ACC------AACA--AAAACAATA.........................................................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TGAAGCTTTGTATAATTAAA........................................................................................2011.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AGAAATTTATTGAAGCTTT...................................................................................................1911.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.......................................................................................AAATAAATAAATTGTACACGGC..............................................................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ATTGAAGCTTTGTATAATTAAC........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
AAA------AAGA------------GAAC-AA-CC---CA--ACC------........................................................................................................................................................................................2011.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.AA------AAGA------------GAAC-AA-CC---CA--ACC------AACA--AAAACA............................................................................................................................................................................2911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TACACGGCTTTCGTAAAGAAATTTAT............................................................................................................2611.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................TACACGGCTTTCGTAAAGAAATTTATT...........................................................................................................2711.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AATAAATTGTACACGGCTTTC..........................................................................................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..A------AAGA------------GAAC-AA-CC---CA--ACC------AAC.....................................................................................................................................................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AATAAATTGTACACGGCTTTCG.........................................................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ATTGAAGCTTTGTATAATTAACT.......................................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTGAAGCTTTGTATAATTAAAG.......................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................AAATTGTACACGGCTTTCGT........................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ATTGAAGCTTTGTATAATTAACA.......................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................................................................................AATTTATTGAAGCTTTGTAA...............................................................................................2011.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTGAAGCTTTGTATAATTAACAAA.....................................................................................2411.0010000100000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AAGCTTTGTATAATTAACA.......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................................................................AAATTTATTGAAGCTTTG..................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................ATAAATTGTACACGGCTTTC..........................................................................................................................2011.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
...............................................................................................AAATTGTACACGGCTTTCGTC.......................................................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................TTATTGAAGCTTTGTATAAA............................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TGAAGCTTTGTATAATTAA.........................................................................................1911.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TCGTAAAGAAATTTATTGAAGCTTT...................................................................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AATTTATTGAAGCTTTGTATAATTAA.........................................................................................2611.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
......................................................................................AAAATAAATAAATTGTACACGGC..............................................................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTGAAGCTTTGTATAATTAACTT......................................................................................2311.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................GGCTTTCGTAAAGAAATTTATTGAAG.......................................................................................................2611.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AAATTTATTGAAGCTTTGTAT...............................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................AATTGTACACGGCTTTCGTAAA.....................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AAAGAAATTTATTGAAGCTTTGT.................................................................................................2311.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AAGAAATTTATTGAAGCTTTG..................................................................................................2111.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................GGCTTTCGTAAAGAAATTTATTGAA........................................................................................................2511.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ACAATAGAAAA-AAAAACATAAAA.......................................................................................................................................................2311.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
..........................................................................................TAAATAAATTGTACACGGCTTTCGTAA......................................................................................................................2711.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTGAAGCTTTGTATAATT...........................................................................................1811.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................ATTTATTGAAGCTTTGTATAATT...........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................................................GTAAAGAAATTTATTGAAGCTTT...................................................................................................2311.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ATTGAAGCTTTGTATAATTTT.........................................................................................2120.5010000010000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TGAAGCTTTGTATAATTAACT.......................................................................................2120.5010000000000000000010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTGAAGCTTTGTATAATTT..........................................................................................1920.5010000000000000000000100000000000000000000000000000000000000000000000000000000000
droMoj3
TGA------AAGAAA-----GAAGAGATG-AA-CC---CA--ACCAACAACAAAAAAAAACCAATAGAAAAAACTAAAA-AAAAAAAAAATAAA-CAATTGTACACTGCTTTCGTAAAGAAATTTATTGAAGCTTTGTATAATTAAAAAAAAAAA----AACTGAACTTTTGTGTTTTTATTT----------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
............................................................................................................................TATTGAAGCTTTGTATAATT...........................................................................................2015.005400001
.............................................................................................A-CAATTGTACACTGCTTTCGTA.......................................................................................................................2213.003100110
.............AA-----GAAGAGATG-AA-CC---CA--ACCAACA..........................................................................................................................................................................................2411.001000001
..............................................................................................................................TTGAAGCTTTGTATAATTAAA........................................................................................2111.001000100
.........................................................................................ATAAA-CAATTGTACACTGCTTTCGT........................................................................................................................2511.001000001
.............................................................................................................................ATTGAAGCTTTGTATAATTAT.........................................................................................2111.001001000
............................................................................................................................TATTGAAGCTTTGTATAATTA..........................................................................................2111.001100000
.......................GAGATG-AA-CC---CA--ACCAACA..........................................................................................................................................................................................1911.001010000
..............A-----GAAGAGATG-AA-CC---CA--ACCAACAAC........................................................................................................................................................................................2511.001100000
...................................................................................................................AAAGAAATTTATTGAAGCTTTGT.................................................................................................2311.001000001
.............................................................................................A-CAATTGTACACTGCTTTCG.........................................................................................................................2011.001001000
...........GAAA-----GAAGAGATG-AA-CC---CA--ACCAAC...........................................................................................................................................................................................2511.001000010
.............................................................................................................................ATTGAAGCTTTGTATAATTA..........................................................................................2011.001100000
..............................................................................................................................TTGAAGCTTTGTATAATTC..........................................................................................1911.001100000
...............................................................................................CAATTGTACACTGCTTTCGTAA......................................................................................................................2211.001100000
....................................................................................................................AAGAAATTTATTGAAGCTTTGT.................................................................................................2211.001000001
...................................................................................................................AAAGAAATTTATTGAAGCTT....................................................................................................2011.001000001
............................................................................................AA-CAATTGTACACTGCTTTCGT........................................................................................................................2211.001100000
............................................................................................................................TATTGAAGCTTTGTATAAT............................................................................................1911.001100000
..............................................................................................................................TTGAAGCTTTGTATAATCT..........................................................................................1950.201001000
droGri2
ACT------AAAAAAAAAAAAAAGTGAAC-AA-CC---CA--ACC---------AACAAAACAATAGAAA----------------AAAATAAA-CAATTGTACACGGCTTTCGTAAAGAAATTTATCGAAGCTTTGTATAATTAACCAAAAAAAAACAACCTGATC-TTTGTGTTATTATTT----------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................................AA-CAATTGTACACGGCTTTCGT........................................................................................................................2212.00211
.......................................A--ACC---------AACAAAACAATAGAAA----------------.....................................................................................................................................................2011.00110
...............................................................................................CAATTGTACACGGCTTTCGTG.......................................................................................................................2111.00110
.............................................................................................A-CAATTGTACACGGCTTTCGTA.......................................................................................................................2211.00110
..............................................................................................................................TCGAAGCTTTGTATAATTAACT.......................................................................................2211.00101
............................................................................................AA-CAATTGTACACGGCTTTCG.........................................................................................................................2111.00110
...................AAAAGTGAAC-AA-CC---CA--ACC---------A....................................................................................................................................................................................2011.00110

Generated: 10/20/2015 at 07:46 PM