ID:

dan_883

 Coordinate:

scaffold_12943:584295-584445 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.9 -2.5 -2.5

Flybase annnotation

CDS [Dana\GF22712-cds]; exon [dana_GLEANR_681:11]; intron [Dana\GF22712-in]

Repeatable elements

NameClassFamilyStrand
(CAAAAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGAAATGCCGTCTCTCTTGTGAATCAAGCGCCCCTTAATCCATTTACTAAACATTAAACACATATTTAGACAGCTTTACACACAAAAACACACTGACACACATACCACACACACGATACTCGATAATCCTAATTAGTTTTAATCGAAGCCAAAAGAAAAACAAAACCAAAACCAAAAACAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCAGTTGGCAACAACAACCCCGATAGC
**************************************************......................................................................(((((((..((....))..)).)))))......................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V039
embryo
 V106
head
.........................................................................................................................................................................................CGCTGAACCATAGCAGGCT............................................... 19 3 6 8.17 49 30 1 11 2 5
..........................................................................................................................................................................................GCTGAACCATAACAGGCTAGC............................................ 21 3 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................CGCTTAACCATAGCAGGCTA.............................................. 20 3 2 1.00 2 2 0 0 0 0
...........................................................................................................................................................................................CTTAACCATAGCAGGCTAGC............................................ 20 3 2 1.00 2 2 0 0 0 0
.......................................................................................................................................................................CAAAACCAAAAACAAAACC................................................................. 19 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................CGCTGAACCATAACAGGCT............................................... 19 2 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................GAAAAACACAACCAAAACCA............................................................................ 20 1 2 0.50 1 0 1 0 0 0
..............................................................................................TGACACACGTCCCACACAC.......................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0
.................................................................................................................................................................................................CGAAACAGGCTCGACACGC....................................... 19 2 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................CGCTGAACCAAACCAGGCT............................................... 19 2 2 0.50 1 0 0 1 0 0
.......................................................................................................................................................AAAAGAAAAACAACACCAAAA............................................................................... 21 1 3 0.33 1 0 0 0 1 0
.........................................................................................................................................................AACAAAAACAAAACGAATACCAAAAACA...................................................................... 28 3 3 0.33 1 0 1 0 0 0
....................................................................................................................................................................................AAAACCGCTTAACCAGAA..................................................... 18 1 3 0.33 1 0 1 0 0 0
........................................................................................................................................................AAAGAACAACAAAACCCAAACC............................................................................. 22 2 3 0.33 1 0 1 0 0 0
..........................................................................................................................................................AGAAAAACAAATCCAACACC............................................................................. 20 2 3 0.33 1 0 1 0 0 0
..................................................................................................................................................................AAAACAAAAACCAATAACAAAACC................................................................. 24 2 4 0.25 1 0 1 0 0 0
...................................................................................................................................AATTAGTTGTAAGCGAAGC..................................................................................................... 19 2 4 0.25 1 1 0 0 0 0
..........................................................................................................................................................................................GCTTAACCATAGCAGGCT............................................... 18 2 4 0.25 1 0 1 0 0 0
.................................................................................................................................................................................................CGAAATAGGCTCGACACGC....................................... 19 3 14 0.21 3 1 0 0 0 2
........................................................................................................................................................AACGAAAAACACACCCAAAACCA............................................................................ 23 3 5 0.20 1 0 1 0 0 0
................................................................................................................................................................ACAAAACCAAAACCCAAAAC....................................................................... 20 1 5 0.20 1 0 1 0 0 0
................................................................................................................................................................................................ACGAAACAGGCTCGACACGC....................................... 20 3 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................AACCAAAACCAAAAACACCACC................................................................. 22 2 5 0.20 1 0 1 0 0 0
...............................................CTAAACATTACACCCATA.......................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 1 0
.........................................................................................................................................................................................CGCTGAACCATACCAGGCT............................................... 19 3 6 0.17 1 1 0 0 0 0
..........................................................................................................................................................AGAAAAACACACCCAAAACCA............................................................................ 21 2 6 0.17 1 0 1 0 0 0
.......................................................................................................................................................................CAAAACCCAAAACAAAACC................................................................. 19 1 8 0.13 1 0 1 0 0 0
..................................................................................................................................................AGGCCAAAAGAAAAACAAA...................................................................................... 19 1 8 0.13 1 0 0 0 1 0
........................................................................................................................................................AAAGAAAAAGAGAACCAACACCA............................................................................ 23 3 9 0.11 1 0 1 0 0 0
....................................................................................................................................................................AACCAAACCCAAAAACAAAA................................................................... 20 1 9 0.11 1 0 1 0 0 0
........................................................................................................................................................AAAGAAAAACAACACCAAAACA............................................................................. 22 2 10 0.10 1 0 1 0 0 0
.......................................................................................................................................................AAAAGAAAAACAAAACCGAAA............................................................................... 21 1 10 0.10 1 0 1 0 0 0
.........................................................................................................................................................AAAAAAAACAAAACCAAAACCA............................................................................ 22 1 10 0.10 1 0 1 0 0 0
..........................................................................................................................................................AAAAAAACAAAACCAAAACC............................................................................. 20 1 20 0.10 2 0 2 0 0 0
...............................................................................................................................................................AAAAAAACCCAAACCCAAAACAAAAC.................................................................. 26 3 10 0.10 1 0 1 0 0 0
.................................................................................................................................................GAAGCCAAAAGAGAAACAAAATA................................................................................... 23 3 11 0.09 1 0 1 0 0 0
.......................................................................................................................................................AAAAGAAAAACACAACCACCACC............................................................................. 23 3 12 0.08 1 0 1 0 0 0
.................................................................................................................................................GAAGCCAAAAGAAAAAAAA....................................................................................... 19 1 12 0.08 1 0 0 0 1 0
........................................................................................................................................................AAAGAAAAACAAAGCCGAAAC.............................................................................. 21 2 13 0.08 1 0 1 0 0 0
.............................................................................................................................................................AAAACACAACCAAAAGCAAAAA........................................................................ 22 2 13 0.08 1 0 1 0 0 0
.............................................................................................................................................................AAAACAAGACCAAAACCA............................................................................ 18 1 13 0.08 1 0 1 0 0 0
............................................................................................................................................................AAAAACACACCCAAAACCAAA.......................................................................... 21 2 14 0.07 1 0 1 0 0 0
............................................................................................................................................................AAAAACAAAACCAAAGCCAA........................................................................... 20 1 15 0.07 1 0 1 0 0 0
................................................................................................................................................................ACAAAACGAAAACCAACAACA...................................................................... 21 2 15 0.07 1 0 1 0 0 0
.............................................................................................................................................................AAAACAACACCCAAACCAAAA......................................................................... 21 2 15 0.07 1 0 1 0 0 0
..............................................................................................................................................................................AAAAACAAACCCCCCTAACCA........................................................ 21 3 15 0.07 1 0 1 0 0 0
.................................................................................................................................................GAAGCCAAAAGAAACACCA....................................................................................... 19 2 16 0.06 1 0 1 0 0 0
...........................................................................................................................................................GAAAAACAGAACCAAAACGA............................................................................ 20 2 16 0.06 1 0 1 0 0 0
.......................................................................................................................................................................CAAAACCAAAAAGAGAACC................................................................. 19 2 16 0.06 1 0 1 0 0 0
................................................................................................................................................................ACAAAACCAAAACCAAGAAAAAAA................................................................... 24 2 18 0.06 1 0 1 0 0 0
........................................................................................................................................................AAAGAAAAAGCAAACCCAAACCA............................................................................ 23 3 19 0.05 1 0 1 0 0 0
...............................................................................................................................................................AACAAAACCAAAAACAAAAACACCAC.................................................................. 26 3 19 0.05 1 0 1 0 0 0
...........................................................................................................................................................GAAAAACGAAACCAACACC............................................................................. 19 2 20 0.05 1 0 1 0 0 0
.............................................................................................................................................AATTGAAGCAAAAAGAAAAACC........................................................................................ 22 3 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................AAAATCAAAACCAAAAACAA..................................................................... 20 1 20 0.05 1 0 1 0 0 0
............................................................................................................................................................................................TTAACCATAGCAGGCTAGC............................................ 19 3 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................AAACAACACCCAAACCAAAA......................................................................... 20 2 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................GAAAAACAAAACGAACACC............................................................................. 19 2 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................GAAAAACAAAACCAAAAACA............................................................................ 20 1 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................AGAAAAACACAACCAAAGC.............................................................................. 19 2 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................GAGAAACAAAACCAAACCCCAAA......................................................................... 23 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TGCTTTACGGCAGAGAGAACACTTAGTTCGCGGGGAATTAGGTAAATGATTTGTAATTTGTGTATAAATCTGTCGAAATGTGTGTTTTTGTGTGACTGTGTGTATGGTGTGTGTGCTATGAGCTATTAGGATTAATCAAAATTAGCTTCGGTTTTCTTTTTGTTTTGGTTTTGGTTTTTGTTTTGGCGAATTGGTTTTGTCCGAGCGGTGCGAAACCGAGGAGTGGTCAACCGTTGTTGTTGGGGCTATCG
**************************************************......................................................................(((((((..((....))..)).)))))......................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M044
female body
 V106
head
 V055
head
 M058
embryo
 V039
embryo
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGCGGAGT........................... 23 3 3 402.33 1207 661 387 124 35 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGCGGAG............................ 22 3 3 206.00 618 390 146 71 11 0 0
..........................................................................................................................................................................................................GAGGGGTGCGAAAGCGCGGAGT........................... 22 3 3 42.33 127 61 48 7 11 0 0
..........................................................................................................................................................................................................GAGGGGTGCGAAAGCGCGGAG............................ 21 3 3 32.00 96 50 34 7 5 0 0
...........................................................................................................................................................................................................AGGGGTGCGAAAGCGCGGAGT........................... 21 3 5 16.20 81 43 21 11 6 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGCGGA............................. 21 3 8 13.38 107 52 32 16 7 0 0
...........................................................................................................................................................................................................AGGGGTGCGAAAGCGCGGAG............................ 20 3 12 11.42 137 89 27 14 7 0 0
..............................................................................................................................................................................................................GGTGCGAAAGCGCGGAGTCG......................... 20 3 4 11.00 44 12 6 17 9 0 0
............................................................................................................................................................................................................GGGGTGCGAAAGCGCGGAGT........................... 20 3 8 8.38 67 33 21 12 1 0 0
.........................................................................................................................................................................................................CGAGTGGTGCGAAAGCGCGGAGT........................... 23 3 1 5.00 5 3 0 2 0 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGTGGAG............................ 22 3 1 5.00 5 1 0 0 0 4 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAATCGCGGAGT........................... 23 3 1 4.00 4 1 3 0 0 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAACGCGGAGT........................... 23 3 2 4.00 8 0 7 1 0 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGAGGAG............................ 22 2 1 3.00 3 2 0 0 1 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGAGGAGT........................... 23 2 1 3.00 3 3 0 0 0 0 0
.............................................................................................................................................................................................................GGGTGCGAAAGCGAGGAGTCG......................... 21 3 1 3.00 3 2 0 1 0 0 0
...........................................................................................................................................................................................................AGCGGTGCGAAAGCGCGGAGTCG......................... 23 3 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................................CGAGCGGTGCGAAAGCGCGGAGTCG......................... 25 3 1 2.00 2 1 0 1 0 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAACCGCGGAGTC.......................... 24 3 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAACCGCGGAGT........................... 23 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................................................................................................................................CGGGGTGCGAAACCGAGGAGTCG......................... 23 3 1 1.00 1 0 0 0 1 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGTGGA............................. 21 3 2 1.00 2 0 0 1 0 1 0
..........................................................................................................................................................................................................GAGCGGTGCGAAAGCGCGGAGTCG......................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................TCAACCGTTGTTGTTGGGGC..... 20 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGTGGAGT........................... 23 3 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................GCGGTGCGAAAGCGTGGAGTCG......................... 22 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................GAGGGGTGCGAAAGCGAGGAGTCG......................... 24 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................CGAGCGGTGCGAAAGCGCGGAGT........................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................CGAGTGGTGCGAAAGCGCGGAG............................ 22 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................ACGAGGGGTGCGAAACCGCGGAG............................ 23 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................ATTGGTTTTGTCCGCGCGATG......................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................GGGGTGCGAAAGCGAGGAGTC.......................... 21 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................ACGAGGGGTGCGAAACCGCGGAGT........................... 24 3 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................GTGCGAAACCGTGGAGTGG......................... 19 1 1 1.00 1 0 0 0 1 0 0
..............................................................................................................................................................................................................GGTGCGAAAGCGAGGAGTCG......................... 20 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGCGGAGTGG......................... 25 3 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................GCGGTGCGAAAGCGCGGAGTC.......................... 21 3 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGAGGAGTCG......................... 25 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................ATGGCGTGTGTGCAATAAGCT............................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0
.............................................................................................................................................................................................................CGGTGCGAAAGCGCGGAGTCG......................... 21 3 2 1.00 2 1 0 1 0 0 0
..........................................................................................................................................................................................................GAGGGGTGCGAAATCGCGGAGT........................... 22 3 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................GAGGGGTGCGAAACCGCGGAGT........................... 22 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................GTTTTGTCCGAGCGGTGCGAA..................................... 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................GCGGTGCGAAAGCGCGGAGTCG......................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................AATTGGTTCTGTCCGGGCGG........................................... 20 2 1 1.00 1 0 0 0 0 0 1
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGCGGAGTG.......................... 24 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................GAGGGGTGCGAAAGCGCGGA............................. 20 3 17 0.53 9 5 2 2 0 0 0
..........................................................................................................................................................................................................GAGGGGTGCGAAAACGCGGAGT........................... 22 3 2 0.50 1 0 1 0 0 0 0
.............................................................................................................................................................................................ATGGGTTTTGTCCGCGCGATG......................................... 21 3 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................................................................GGGGTGCGAAATCGCGGAGT........................... 20 3 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................................................................GGGGTGCGAAAGCGCGGAGTG.......................... 21 3 3 0.33 1 0 1 0 0 0 0
........................................................................................................................................................................................................CCGAGGGGTGCGAAAGCGCGGAGT........................... 24 3 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAACGCGGAG............................ 22 3 3 0.33 1 0 1 0 0 0 0
..............................................................................................................................................................................................................GGTGCGAAAGCGTGGAGTC.......................... 19 3 9 0.33 3 1 0 0 0 2 0
..............................................................................................................................................................................................................GGTGCGAAAGCGCGGAGTC.......................... 19 3 14 0.29 4 0 4 0 0 0 0
..............................................................................................................................................................................................................GGTGCGAAAGCGCGGAGT........................... 18 2 4 0.25 1 0 1 0 0 0 0
.............................................................................................................................................................................................................CGGTGCGAAAGCGTGGAGTC.......................... 20 3 4 0.25 1 0 0 0 0 1 0
..........................................................................................................................................................................................................GAGGGGTGCGAAATCGCGGA............................. 20 3 5 0.20 1 0 0 1 0 0 0
..........................................................................................................................................................................................................GAGGGGTGCGAAAGCGGGGAG............................ 21 3 5 0.20 1 1 0 0 0 0 0
...........................................................................................................................................................................................ACATTGGTTTTGTCCGCGCG............................................ 20 3 6 0.17 1 0 0 1 0 0 0
.........................................................................................................................................................................................................CGAGTGGTGCGAAAGCGCGG.............................. 20 3 7 0.14 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................CCGTTGTTGGTGGTGCTA... 18 2 11 0.09 1 0 0 0 1 0 0
.........................................................................................................................................................................................................CGAGGGGTGCGAAAGCGTGG.............................. 20 3 12 0.08 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................ATGAGTGGTCAAGCGTTGA.............. 19 3 16 0.06 1 0 1 0 0 0 0
.........................................................................................................................................................................................................AGAGGGGTGCGAAAGCGAGG.............................. 20 3 17 0.06 1 1 0 0 0 0 0
............................................................................................................................................................................................................................GAGTCGTCGACCATTGTTG............ 19 3 20 0.05 1 0 0 0 1 0 0
.............................................TGGATTTGTAGTTTGTGTAT.......................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1
........................................................................................................................................................................................................CGGACCGGTGCGAATCCGA................................ 19 3 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12943:584245-584495 + dan_883 ACGA----------------AATGCCGT------CTCTCTTGTGAATC-----AAGCG-CCCC--TTAATCCATTTACTAAACATTAAAC---------ACA--TATTTAGACAGCTTTACACA------------------------------------CAAAAAC--ACAC-------------------------------------TGACACACATACC----------ACACACAC--------GA---TAC-----TCG-------ATA---AT-CCTAA-TTAGTTTT-AATCGA--AGCCAAA-A--------------GAAAAACAAAACCAAAACCAAAAACAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCAGTTGG---------CA----------------------------------------------------------ACAACAAC--------------------------------------C---------------CCGATAGC
droBip1 scf7180000396535:144748-144996 - ----------------------------TGACAACTCTCTCGTTAAGC-----GAGTGCCCCC--TTAATCCATTTACTAAA----------------------TACATAGACAGCTTTACACA------------------------------------CACAAAACCACAC-------------------------------------TGACACACATGCC----------ACACACAC----ACACGA---TAC-----TCGATATCCTATA---AT-CTTAA-TTAGTTTTAAATCGA--AGCCAAA-A--------------GAGAAACAAATCCAAAACCAAAACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCAGTTGG---------CA----------------------------------------------------------ACAACAAT--------------------------------------C---------------CCGATAGC
droKik1 scf7180000302679:1114691-1114936 + ATGG-------GA---------------------ATCTCATGGGATTCAACACAAGCG-CCCC--TTAATCCACATACTAAACATTAAAA--------AACA--TA-AGAGACAGCTTAACACA------------------------------------CACACAC--ACACA------------CAC-------A--------------------CACACCA--CA--AACACACACAC----AAA------CAG-----TTG-------ATG---AT-CTGAACCTAGTTTT-AATCAAA-AGCCAA--C--------------AAA-------------AC---------AACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCGCCGGGCAT---------CA----------------------------------------------------------GCAGCAGCAGCAACA---ACCAC-----------------------A---------------CCGATAGC
droFic1 scf7180000453712:31616-31881 + ATGA-------AT--A--CAATTGTAGT------------TGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATCAAAC--------AACA--TACCTAGACAGCTTTAAACA------------------------------------CACACAC--A--AA---------ACACACACCACACACACACACTACTCA-----CACATACC----------ACATACAA----AAA-GAGACCAC-----CTG-------ATA---AT-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCGCCGGTCAG---------CA----------------------------------------------------------GCAACAAC------------AAC-----------------------A---------------CAGATAGC
droEle1 scf7180000491186:2178052-2178322 + A--------------------------------TACTTCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTCAAT--------TACA--TACTTAGGCAGCTTTACACA------------------------------------CACAAAC--ACATATAC------------TTTACACACACACTTTACACA-----CACACACT----------CCATACAA------A------CAC-----TTG-------ATA---AT-CTGAA-CTAGTTTT-AATCAA--AGCCAAAACGAAAAAAATTAAAAAAAAAACAAA---AAAACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCAACGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGC
droRho1 scf7180000778060:38436-38685 - ACAAAGTATGGTA-TT--CAAATGTAGTTGACATATCTCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTAAAA--------TACA--TACTTAGACAGCTTTACACA------------------------------------CACACAC--ACA-------------------------------------------CACATATC----------ACATACAA------A------CAC-----TTG-------ATA---AT-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA------------AACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGC
droBia1 scf7180000302408:3972199-3972427 - GCGA-------------------------GACATATCTCTTGTGACCT-----AAGCA-CCCC--CTAATCCACATACTAAACATTCAAG--------AACA--TACCTAGATAGCTTTACACACACTCTCACA--------------------------------------CA---------ACACAT-------------------------------AC--------------CACAC------A------CAC-----TTG-------ATGATAAT-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCGG---------CA----------------------------------------------------------GCAACACC--------------------------------------A---------------CTGATAGC
droTak1 scf7180000415702:273927-274168 - ATT---------------CAAGTGTAGTTGACATATCTCTTGTGATTT-----AAGCA-CCCCTCTTAATCCACATACTAAACATTAAAC--------TACA--TACTTAGACAGCTTTACACA------------------------------------CACACAC--A--TA---------A--------------------------------------------------------C------A------CAC-----TTG-------ATA---AT-CTGAA-CTAGTTTT-AATCAAAAAGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------ACAGCAGCAGCAACAACAACACC-----------------------A---------------CTGATAGC
droEug1 scf7180000409554:224582-224851 - GT----------------CGAATGTAGTTGACATATCTCTTGTGATTT-----AAGCA-CCCC--TTAATCCATATACTAAACATTCAAA--------TACA--TACCTAGACAGCTTTACACA------------------------------------CACACAC--AC-------------CACAC-------AC------------TCACAAACATAAC----------ACATACAA----ACA------CAC-----TTG-------ATA---AT-CTGAA-CTAGTTTT-AATCAA--AGCCGAAACAAAA----C-----AAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAACAACAACAACAACAAC-----------------------A---------------CTGATAGC
dm3 chr2L:9244069-9244312 + ATGA-------AA-AA--CAAATGTAGTTGATATAAATCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTAAAC--------TACA--TACTTAGACAGCTTTACACACACTCACACA--------------------------------------TA---------ACATAC-------A--------------------CA---CA--CC----CACACACAC------A------CAC-----TTG-------ATG---AC-CTGAA-CTAGTTTT-AATCAA--TGCCAAA-C--------------GAA-------------ACCA--------ACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGT
droSim2 2l:8936812-8937048 + dsi_2498 AC-----------------AAATGTAGTTGATATATCTCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTAAAC--------TACA--TACTTAGACAGCTTTACACACACTCACACA--------------------------------------TA---------ACACAC------------------------------------A------CACACACAC------A------CAC-----TTG-------ATG---AC-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGT
droSec2 scaffold_3:4703050-4703295 + ATGA-------AG-AA--CAAATGTAGTTGATATATCTCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTAAAC--------TACA--TACTTAGACAGCTTTATACACACTCACACA--------------------------------------TA---------ACACAC-------A---------------------------CA------CACACACAC------A------CAC-----TTG-------ATA---AC-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAGCAAC--------------------------------------A---------------CTGATAGT
droYak3 2L:11911309-11911564 + ACAAGTACG-ATA-AA--CAAATGTAGTTGATATATCTCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTAAAC--------TACA--TACCTAGACAGCTTTACACACACTCACACA--------------------------------------TA---------ACACAC-------A-----------------------ACCA--CA----CACACACAC------A------CAG-----TTG-------ATG---AC-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA-------------TCCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGT
droEre2 scaffold_4929:9849629-9849868 + AA----------------CAAACGTAGTTGATATATCTCTTGCGATTT-----AAGCA-CCC----TAATCCACATACTAAACATTAAAC--------TACA--TACTTAGACAGCTTTACACAAACTCACACA--------------------------------------TA---------GTACAC-------A---------------------------CA------CACAAACAC------A------CAC---TTTTG-------ATG---AC-CTGAA-CTAGTTCT-AATCAA--AGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGC
dp5 4_group5:1563288-1563548 + ACTAGCTCGG-GAGTTCC------CCGTTTATAGA-------TCAGTT-----AGGCG-CCCC--TTAATCCATATACTAAACATCCA------------CATTTACTTAGACAGCTTCACACA------------------------------------CACAACC--AGACACACACACAACCAGAC-------AC--------------A-----------CACACAAACACACATAC------A------CAC-----TT---------TA---AT-CTCGA-TTAGTTTT-AATCAA--AGCCAAA-C--------------CAA-------------ACC---------ACCGCTTAACCAAAACAGGCTCGCCACGCTTCGGCTCCTCCCCGGGCAC---------GG----------------------------------------------------------CCGCCAACAGCAGCA---GCCAC-----------------------AGTCACAGC--------------C
droPer2 scaffold_5:5971398-5971642 + ACTAGCTCGG-GAGTTCT------CCGTTTATAGA-------TCAGTT-----AGGCG-CCCC--TTAATCCATATACTAAACATCCA------------CATTTACTTAGACAGCTTCACACA------------------------------------CACAACC--AGACA------------CAC-------A------------------CACA-----------AACACACATAC------A------CAC-----TT---------TA---AT-CTCGA-TTAGTTTT-AATCAA--AGCCAAC-C--------------CAA-------------ACC---------ACCGCTTAACCAAAACAGGCTCGCCCCGCTTCGGCTCCTCCCCGGGCAC---------GG----------------------------------------------------------CCGCCAACAGCAGCA---GCCAC-----------------------AGTCACAGC--------------C
droWil2 scf2_1100000004521:249658-249943 + dwi_1196 A------------------------------------------------------GCT-CCCCACACTGCCCATATACTAAACATTAAATACACAAAAAACA--CACTTAGACAGCTTCGCACA------------------------------------CACACAC--ATACATACAGAAAGACATAC-------AA--------------A---------CA--CA----CACATACAC------A------CAC-----AAA--ATACCTTA---AT-TATGA-TTAGCGAT-AACCAAA-AGCCAAAACCAAAAAAACAAAAAAAA----------------------AAAAACGCTTAACCGAAACAGGCTCGCCACGCTTTGGTGCATCTCCTGGCACGAATACCGGCAACAACAACAACAGC-A------------------------------------------GCAACAAC------------AAT-----------------------AGCAACAGCAACCATACTGATAAT
droVir3 scaffold_12963:650912-651175 + dvi_9891 -------------------------------------------------------------CC--CTAATTACTGTACTAAATATTAA----------------TACATAAACAGCTTCACACACACACACACACACGAGCATACCAACACCGTTTCAAACACACAC--A--------------CACAC-------A-------------------------CACA------CACACACACACATACA------CGCAGACATTG-------TTA---ATATTTGA-CTAGTTTTTAACCAA--AGCCAAA-C--------------AAA-------------TCA---------AACGCTTAACCGAAACAGGCTCAACGCGTTTCGGTTTGTCGCCTGGCAA---------CA----------------------------------------------------------ACAACAACAACAACAGCGGCAAC-----------------------AACCACAACAATCACAATGATAGT
droMoj3 scaffold_6540:26135234-26135480 - CCGA-------CT---------------------GT------CCAACT-----GGTGT-CCAA--CTAACCCACACAGCTGACACAGCAC--------AGAA--AA--CGAAAAGCACCACAGA------------------------------------CAAGGCC--A--AA---------A------------------------------------------------CACCCACCA------A----------------------------------------------------------------------------------------------------------TGCTGTCAA-T--------------GGTGCCACAGTTC---------------CATCCGCAACACCAACAACAACCAGTAATAATAACAACACGAACTCGAACTCATCCACTACTACTACCAACAACAACAACACCATCCCCTCTGCTCTCTCTAACCTCTCTCT--GCAC-GACACGGCAGCGACAGC
droGri2 scaffold_9046:1006-1171 - AC-------------------------------------------------------------------------------------------------ACA--TACCAACACCGTTTCGCAAA------------------------------------CACACAC--ACACA---------CCA--------------------------A---------CACA------CACACACAC------A------CAT-----TTG-------TTA---ATATTTGA-TTAGTTTTTAACCAA--AGCCAAA-C--------------AAA-------------TCA---------AACGCTTAACCGAAACAGGCTCAACGCGTTTCGGTTTGTCGCCTGGCAA---------CA----------------------------------------------------------ACAACAAC--------------------------------------------------------AACAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACGA----------------AATGCCGT------CTCTCTTGTGAATC-----AAGCG-CCCC--TTAATCCATTTACTAAACATTAAAC---------ACA--TATTTAGACAGCTTTACACA------------------------------------CAAAAAC--ACAC-------------------------------------TGACACACATACC----------ACACACAC--------GA---TAC-----TCG-------ATA---AT-CCTAA-TTAGTTTT-AATCGA--AGCCAAA-A--------------GAAAAACAAAACCAAAACCAAAAACAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCAGTTGG---------CA----------------------------------------------------------ACAACAAC--------------------------------------C---------------CCGATAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................CAAAACCAAAAACAAAACC.........................................................................................................................................................................................1911.001010000
droBip1
----------------------------TGACAACTCTCTCGTTAAGC-----GAGTGCCCCC--TTAATCCATTTACTAAA----------------------TACATAGACAGCTTTACACA------------------------------------CACAAAACCACAC-------------------------------------TGACACACATGCC----------ACACACAC----ACACGA---TAC-----TCGATATCCTATA---AT-CTTAA-TTAGTTTTAAATCGA--AGCCAAA-A--------------GAGAAACAAATCCAAAACCAAAACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCAGTTGG---------CA----------------------------------------------------------ACAACAAT--------------------------------------C---------------CCGATAGCSizeHit CountTotal NormTotal
No Reads
droKik1
ATGG-------GA---------------------ATCTCATGGGATTCAACACAAGCG-CCCC--TTAATCCACATACTAAACATTAAAA--------AACA--TA-AGAGACAGCTTAACACA------------------------------------CACACAC--ACACA------------CAC-------A--------------------CACACCA--CA--AACACACACAC----AAA------CAG-----TTG-------ATG---AT-CTGAACCTAGTTTT-AATCAAA-AGCCAA--C--------------AAA-------------AC---------AACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCGCCGGGCAT---------CA----------------------------------------------------------GCAGCAGCAGCAACA---ACCAC-----------------------A---------------CCGATAGCSizeHit CountTotal NormTotal
No Reads
droFic1
ATGA-------AT--A--CAATTGTAGT------------TGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATCAAAC--------AACA--TACCTAGACAGCTTTAAACA------------------------------------CACACAC--A--AA---------ACACACACCACACACACACACTACTCA-----CACATACC----------ACATACAA----AAA-GAGACCAC-----CTG-------ATA---AT-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCGCCGGTCAG---------CA----------------------------------------------------------GCAACAAC------------AAC-----------------------A---------------CAGATAGCSizeHit CountTotal NormTotal
No Reads
droEle1
A--------------------------------TACTTCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTCAAT--------TACA--TACTTAGGCAGCTTTACACA------------------------------------CACAAAC--ACATATAC------------TTTACACACACACTTTACACA-----CACACACT----------CCATACAA------A------CAC-----TTG-------ATA---AT-CTGAA-CTAGTTTT-AATCAA--AGCCAAAACGAAAAAAATTAAAAAAAAAACAAA---AAAACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCAACGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGCSizeHit CountTotal NormTotal
No Reads
droRho1
ACAAAGTATGGTA-TT--CAAATGTAGTTGACATATCTCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTAAAA--------TACA--TACTTAGACAGCTTTACACA------------------------------------CACACAC--ACA-------------------------------------------CACATATC----------ACATACAA------A------CAC-----TTG-------ATA---AT-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA------------AACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGCSizeHit CountTotal NormTotal
No Reads
droBia1
GCGA-------------------------GACATATCTCTTGTGACCT-----AAGCA-CCCC--CTAATCCACATACTAAACATTCAAG--------AACA--TACCTAGATAGCTTTACACACACTCTCACA--------------------------------------CA---------ACACAT-------------------------------AC--------------CACAC------A------CAC-----TTG-------ATGATAAT-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCGG---------CA----------------------------------------------------------GCAACACC--------------------------------------A---------------CTGATAGCSizeHit CountTotal NormTotal
No Reads
droTak1
ATT---------------CAAGTGTAGTTGACATATCTCTTGTGATTT-----AAGCA-CCCCTCTTAATCCACATACTAAACATTAAAC--------TACA--TACTTAGACAGCTTTACACA------------------------------------CACACAC--A--TA---------A--------------------------------------------------------C------A------CAC-----TTG-------ATA---AT-CTGAA-CTAGTTTT-AATCAAAAAGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------ACAGCAGCAGCAACAACAACACC-----------------------A---------------CTGATAGCSizeHit CountTotal NormTotal
No Reads
droEug1
GT----------------CGAATGTAGTTGACATATCTCTTGTGATTT-----AAGCA-CCCC--TTAATCCATATACTAAACATTCAAA--------TACA--TACCTAGACAGCTTTACACA------------------------------------CACACAC--AC-------------CACAC-------AC------------TCACAAACATAAC----------ACATACAA----ACA------CAC-----TTG-------ATA---AT-CTGAA-CTAGTTTT-AATCAA--AGCCGAAACAAAA----C-----AAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAACAACAACAACAACAAC-----------------------A---------------CTGATAGCSizeHit CountTotal NormTotal
No Reads
dm3
ATGA-------AA-AA--CAAATGTAGTTGATATAAATCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTAAAC--------TACA--TACTTAGACAGCTTTACACACACTCACACA--------------------------------------TA---------ACATAC-------A--------------------CA---CA--CC----CACACACAC------A------CAC-----TTG-------ATG---AC-CTGAA-CTAGTTTT-AATCAA--TGCCAAA-C--------------GAA-------------ACCA--------ACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................CCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------........2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCTCCTCACCGGGC.............................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGT2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................CAC-----TTG-------ATG---AC-CTGAA-CT..............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ACATTAAAC--------TACA--TACTTAGACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CCA--------ACCGCTTAACCAAAACAGGCTC......................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................G---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATA..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGAT...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CTTGTGATTT-----AAGCA-CCCC--TTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TGCCAAA-C--------------GAA-------------ACCA--------ACCGCTTAACC.................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................C-------A--------------------CA---CA--CC----CACACACAC------A------CA...............................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................C-------A--------------------CA---CA--CC----CACACACAC------A------C................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AC-------A--------------------CA---CA--CC----CACACACAC------A------.................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AC-------A--------------------CA---CA--CC----CACACACAC------A------CA...............................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
AC-----------------AAATGTAGTTGATATATCTCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTAAAC--------TACA--TACTTAGACAGCTTTACACACACTCACACA--------------------------------------TA---------ACACAC------------------------------------A------CACACACAC------A------CAC-----TTG-------ATG---AC-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................CCTCACCGGGCAG---------CA----------------------------------------------------------GCAACA................................................................2111.00100000000000100000
.......................................................................................................................................................................................................................................................................TG-------ATG---AC-CTGAA-CTAGTT..........................................................................................................................................................................................................................................................1811.00100000010000000000
droSec2
ATGA-------AG-AA--CAAATGTAGTTGATATATCTCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTAAAC--------TACA--TACTTAGACAGCTTTATACACACTCACACA--------------------------------------TA---------ACACAC-------A---------------------------CA------CACACACAC------A------CAC-----TTG-------ATA---AC-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAGCAAC--------------------------------------A---------------CTGATAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACAAGTACG-ATA-AA--CAAATGTAGTTGATATATCTCTTGTGATTT-----AAGCA-CCCC--TTAATCCACATACTAAACATTAAAC--------TACA--TACCTAGACAGCTTTACACACACTCACACA--------------------------------------TA---------ACACAC-------A-----------------------ACCA--CA----CACACACAC------A------CAG-----TTG-------ATG---AC-CTGAA-CTAGTTTT-AATCAA--AGCCAAA-C--------------GAA-------------TCCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................CTCACCGGGCAG---------CA----------------------------------------------------------GCAACAA...............................................................2111.00100000010000
.............................................................................................................................................................................................................................................ACAC------A------CAG-----TTG-------ATG---AC-CTGAA-CTAGTT..........................................................................................................................................................................................................................................................2711.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGCTCCTCACCGGG..............................................................................................................................................1911.00101000000000
............................................................................................................................................................................TA---------ACACAC-------A-----------------------ACCA--CA----CACACA.................................................................................................................................................................................................................................................................................................................2111.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................TCCA--ACCAAAACCGCTTAACCAAAACAG..........................................................................................................................................................................2811.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................CAGGCTCGCCACGCTTTGGCTC.......................................................................................................................................................2211.00110000000000
....GTACG-ATA-AA--CAAATGTAGTTGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000
..........................................................................................................................................................................................CAC-------A-----------------------ACCA--CA----CACACACAC------A------C................................................................................................................................................................................................................................................................................................21120.08101000000000
droEre2
AA----------------CAAACGTAGTTGATATATCTCTTGCGATTT-----AAGCA-CCC----TAATCCACATACTAAACATTAAAC--------TACA--TACTTAGACAGCTTTACACAAACTCACACA--------------------------------------TA---------GTACAC-------A---------------------------CA------CACAAACAC------A------CAC---TTTTG-------ATG---AC-CTGAA-CTAGTTCT-AATCAA--AGCCAAA-C--------------GAA-------------ACCA--ACCAAAACCGCTTAACCAAAACAGGCTCGCCACGCTTTGGCTCCTCACCGGGCAG---------CA----------------------------------------------------------GCAACAAC--------------------------------------A---------------CTGATAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................A------CAC---TTTTG-------ATG---AC-CTGAA-CTAGTC..........................................................................................................................................................................................................................................................2511.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGCTCCTCACCGGGC.............................................................................................................................................2011.0010100000
dp5
ACTAGCTCGG-GAGTTCC------CCGTTTATAGA-------TCAGTT-----AGGCG-CCCC--TTAATCCATATACTAAACATCCA------------CATTTACTTAGACAGCTTCACACA------------------------------------CACAACC--AGACACACACACAACCAGAC-------AC--------------A-----------CACACAAACACACATAC------A------CAC-----TT---------TA---AT-CTCGA-TTAGTTTT-AATCAA--AGCCAAA-C--------------CAA-------------ACC---------ACCGCTTAACCAAAACAGGCTCGCCACGCTTCGGCTCCTCCCCGGGCAC---------GG----------------------------------------------------------CCGCCAACAGCAGCA---GCCAC-----------------------AGTCACAGC--------------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GCCAC-----------------------AGTCACAGC--------------C2211.0010100000000
...........................................................................................................................................................................................AC-------AC--------------A-----------CACACAAACACACATA...............................................................................................................................................................................................................................................................................................................21180.0610100000000
droPer2
ACTAGCTCGG-GAGTTCT------CCGTTTATAGA-------TCAGTT-----AGGCG-CCCC--TTAATCCATATACTAAACATCCA------------CATTTACTTAGACAGCTTCACACA------------------------------------CACAACC--AGACA------------CAC-------A------------------CACA-----------AACACACATAC------A------CAC-----TT---------TA---AT-CTCGA-TTAGTTTT-AATCAA--AGCCAAC-C--------------CAA-------------ACC---------ACCGCTTAACCAAAACAGGCTCGCCCCGCTTCGGCTCCTCCCCGGGCAC---------GG----------------------------------------------------------CCGCCAACAGCAGCA---GCCAC-----------------------AGTCACAGC--------------CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA---GCCAC-----------------------AGTT....................19130.081000001
droWil2
A------------------------------------------------------GCT-CCCCACACTGCCCATATACTAAACATTAAATACACAAAAAACA--CACTTAGACAGCTTCGCACA------------------------------------CACACAC--ATACATACAGAAAGACATAC-------AA--------------A---------CA--CA----CACATACAC------A------CAC-----AAA--ATACCTTA---AT-TATGA-TTAGCGAT-AACCAAA-AGCCAAAACCAAAAAAACAAAAAAAA----------------------AAAAACGCTTAACCGAAACAGGCTCGCCACGCTTTGGTGCATCTCCTGGCACGAATACCGGCAACAACAACAACAGC-A------------------------------------------GCAACAAC------------AAT-----------------------AGCAACAGCAACCATACTGATAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................TCTCCTGGCACGAATACCGGCA................................................................................................................................2211.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAGC-A------------------------------------------GCAACAAC------------AA................................................26200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC------------AAT-----------------------AGCAACAGCA..............19200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGC-A------------------------------------------GCAACAAC------------A.................................................19200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC------------AAT-----------------------AGCAACAGC...............18200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGC-A------------------------------------------GCAACAAC------------..................................................20200.05100010
droVir3
-------------------------------------------------------------CC--CTAATTACTGTACTAAATATTAA----------------TACATAAACAGCTTCACACACACACACACACACGAGCATACCAACACCGTTTCAAACACACAC--A--------------CACAC-------A-------------------------CACA------CACACACACACATACA------CGCAGACATTG-------TTA---ATATTTGA-CTAGTTTTTAACCAA--AGCCAAA-C--------------AAA-------------TCA---------AACGCTTAACCGAAACAGGCTCAACGCGTTTCGGTTTGTCGCCTGGCAA---------CA----------------------------------------------------------ACAACAACAACAACAGCGGCAAC-----------------------AACCACAACAATCACAATGATAGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................AACCGAAACAGGCTCAACGCGT...............................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GCTCAACGCGTTTCGGTTTGT.....................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCGGCAAC-----------------------AACCACA.................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AACGCGTTTCGGTTTGTCGCCTGGC.............................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................CACACACACACACACACGAGCAT................................................................................................................................................................................................................................................................................................................................................................................................................2380.131000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AA---------CA----------------------------------------------------------ACAACAACAACAACAGCGGCAAC-----------------------........................2790.111000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------ACAACAACAACAACAGCGGCAAC-----------------------........................24120.081001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AC-------A-------------------------CACA------CACACACACACATAC........................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CAC-------A-------------------------CACA------CACACACACACATACA------.................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................CACA------CACACACACACATACA------C................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GGCAA---------CA----------------------------------------------------------ACAACAACAACAACAGC.....................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CA----------------------------------------------------------ACAACAACAACAACAGCGG...................................................21200.051000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AA---------CA----------------------------------------------------------ACAACAACAACAACAGCGGC..................................................24200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CCGA-------CT---------------------GT------CCAACT-----GGTGT-CCAA--CTAACCCACACAGCTGACACAGCAC--------AGAA--AA--CGAAAAGCACCACAGA------------------------------------CAAGGCC--A--AA---------A------------------------------------------------CACCCACCA------A----------------------------------------------------------------------------------------------------------TGCTGTCAA-T--------------GGTGCCACAGTTC---------------CATCCGCAACACCAACAACAACCAGTAATAATAACAACACGAACTCGAACTCATCCACTACTACTACCAACAACAACAACACCATCCCCTCTGCTCTCTCTAACCTCTCTCT--GCAC-GACACGGCAGCGACAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................C---------------CATCCGCAACACCAACAACAACCAGTA.............................................................................................................2811.001100000
................................................................................GACACAGCAC--------AGAA--AA--CGAAAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droGri2
AC-------------------------------------------------------------------------------------------------ACA--TACCAACACCGTTTCGCAAA------------------------------------CACACAC--ACACA---------CCA--------------------------A---------CACA------CACACACAC------A------CAT-----TTG-------TTA---ATATTTGA-TTAGTTTTTAACCAA--AGCCAAA-C--------------AAA-------------TCA---------AACGCTTAACCGAAACAGGCTCAACGCGTTTCGGTTTGTCGCCTGGCAA---------CA----------------------------------------------------------ACAACAAC--------------------------------------------------------AACAGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................ACCAA--AGCCAAA-C--------------AAA-------------TCA---------AACGC.......................................................................................................................................................................................2411.00110

Generated: 05/17/2015 at 11:29 PM