dan_882

CDS [Dana\GF22712-cds]; exon [dana_GLEANR_681:7]; exon [dana_GLEANR_681:8]; CDS [Dana\GF22712-cds]; intron [Dana\GF22712-in]

##################################################-------------------------------------------------------------------################################################## TTTGCTGCAGCAGCAACAAAAGCAGCAGCTACTCGTCCCAGAGAATGCCAGTGAGTTATAATTTTTAAAAGAATGATTTTCCGGAATAAAGACTATATATTTTAAATTCCAATTTAGCTGGCATCAATGCGGGCCTCAACAACATCAACTCGCTGATGAACACTACG ************************************************.....((..((((...................(((((..(((........)))..))))))))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V055 head
..................................................................................................ATTTTAAATTCCAATTAAGC.................................................	20	1	2	2.50	5	5	0	0
......................................................................................................................................CTCAACAACATAAACTCGATGAT..........	23	2	1	1.00	1	1	0	0
......................................................................................................................................CTCAACAACATCAACTCGCTG............	21	0	1	1.00	1	0	1	0
...................AAGCAGCAGCTACTCGTCCCAGAGAA..........................................................................................................................	26	0	1	1.00	1	0	1	0
...........................GCTACTCGTCCCAGAGAATGCCACT...................................................................................................................	25	1	1	1.00	1	0	1	0
..................................................................................................................................GGGCCTCAACAACATCAACT.................	20	0	1	1.00	1	1	0	0
...................................................................................................................................GTCCTCAACAACATCAACTCGCT.............	23	1	1	1.00	1	1	0	0
.....................GCAGCAGCTACTCGTCCCAGA.............................................................................................................................	21	0	1	1.00	1	0	1	0
..................................................................................................ATTTTAAATTCCAATTAAGCCG...............................................	22	2	2	0.50	1	0	1	0
................................................................................................................TTTATCTGGCACCAATGC.....................................	18	2	3	0.33	1	0	0	1
................................................................................................GTATTTTAAATTCCAATTAAGCC................................................	23	3	3	0.33	1	1	0	0
....................................................................................................TTTAAATTCCAATTAAGCCG...............................................	20	2	10	0.10	1	1	0	0
....................................................................................................TTTAAATTCCAATTAAGC.................................................	18	1	11	0.09	1	1	0	0

AAACGACGTCGTCGTTGTTTTCGTCGTCGATGAGCAGGGTCTCTTACGGTCACTCAATATTAAAAATTTTCTTACTAAAAGGCCTTATTTCTGATATATAAAATTTAAGGTTAAATCGACCGTAGTTACGCCCGGAGTTGTTGTAGTTGAGCGACTACTTGTGATGC ************************************************.....((..((((...................(((((..(((........)))..))))))))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V039 embryo	V055 head	M058 embryo	M044 female body
........................CGTCGATGTGCATCGTCTCTTA.........................................................................................................................	22	3	1	1.00	1	1	0	0	0
...............................................................................................................................ATGCCGGGAGTTGTTGTA......................	18	2	3	0.33	1	1	0	0	0
................................AGCAGGGTCTCTAACGTACAC..................................................................................................................	21	3	4	0.25	1	0	1	0	0
..................................................................................CGTTATTTCTGATACATGAAAT...............................................................	22	3	4	0.25	1	0	1	0	0
.................................................................ATTTTCTTACTAGAACGC....................................................................................	18	2	5	0.20	1	1	0	0	0
..............TTGTTTTCTTCGTCGATG.......................................................................................................................................	18	1	16	0.06	1	0	0	1	0
...........................................................................................................................................GTTGAAGGTAAGCGACTACT........	20	3	17	0.06	1	0	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_12943:583041-583207 +	dan_882	TTTGCTGCAGCAGCAACAAAA-------GCAGCAGCTACTCGT--------------------C-----CCAGAGAATGCCAGTGAG-----------------------TTAT------------------------------------------------------------------AATTTTTAAAAGA-----ATGATTTTC------CGGAA--------------------------------------------------------TAAAGACTATAT-------------------------------------ATTTTAAATTCCAATTT--------------------------------------------------AG-----------------------CTGGCATCAATGCGGGCCTCAACAACATCAACTCGCTGATGAA------------------------CA-------------CTACG
droBip1	scf7180000396535:145990-146144 -		TCTGCTGCAGCAGCAACAGAA-------GCAGCAGCTACTCGT--------------------C-----CCAGAGAATGCCAGTGAG-----------------------TAGA------------------------------------------------------------------CATTTTTATAAGA-----AAGGTTTTC------CAAAG--------------------------------------------------------T---AACTATA-----------------------------------------------------------------------------TATCCTTCC-------------------AG-----------------------CTGGCATCAATGCGGGCCTCAACAACATCAACTCGCTGATGAA------------------------CA-------------CGACG
droKik1	scf7180000302679:1113527-1113694 +		ACTGCTGCAGCAGCAGCAGAA-------GCAGCAGCTGCTCGT--------------------C-----CCGGAGAATGCCAGTAAG-----------------------TATTGGGAAG-----------------------------------------------------------------------------------------AAG------------------------------CTTTCAAAG-------------------------GAGACCACCTAACCCACAA-----------A-------CTCATCTCT------------------------T--------------CATCCTTGT-------------------AG-----------------------CTGGCATGAATGCGGGCCTGAACAACATTGGCTCGCTGCTCAA------------------------TA-------------CCACG
droFic1	scf7180000453778:859836-860007 -		ACAACAGCAGCAGCAACAACA-------ACAGCAACAGCAGGCTACGAGTAGCAATGCTTTGGC-----TAAGACTTTACCAGTGGCTCTTCGCAACGGA-----------------------ACCCAACAATTCTTAT------CACCCAACTTGCTTGCCCAA--------------------------CAACAGCAGCA---------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAATTGGAGCAG---CAACAGCA----------GCA------------------------GG-------------CTGTG
droEle1	scf7180000491186:2176939-2177037 +		AATAA---------------------------------TTTGT--------------------T-----CCGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATGTAAAT-----GT------CAAAA---AT-----------------------------------------------------TCCCATTTT-------------------AG-----------------------CTGGCATGAACGCGGGCTTGAACAACATTGGCTCTTTGCTGAA------------------------CA-------------CGACG
droRho1	scf7180000779985:409061-409238 -		GATCCAACAGCAGCAGCAACA-------TCGCCAGGTGATGAT--------------------C-----AACAACAATGCCAAGTAT-----------------------GCCAAGG------------------------------------------------------------------ATC---------------TAG--A-----------------------CTA--------------------------------------------------------------------------------------------------------------TTTCGA-GACGTTGCAGGA----------------------------AACAGGAGTCACCAATAAAGTGTAAGT----------------------ACATTAAATCCCTGGCTGTAAATTATACAGTCAACATAATGCA--ACTATATAATAAATATTA
droBia1	scf7180000301754:2262279-2262434 -		GCAGCCACAACAGCAAGCAA--------CCAGTAGCAACGC-----------------TTTGAC-----CAAGACATTACCAGTGGCTCTACGCAACGGA-----------------------GGACAACAGTTCTTGT------CTCCCAATTTGCTTGCCCAA--------------------------CAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGCAACAGCAACTGGAGCAG------CAGGCTGCTGCA------------------------CAA------------CAAAA
droTak1	scf7180000415667:91674-91844 +		TCTGCAGCAGCAGCCACCAAA-------TCAGCAGCAGATCAA--------------------AAATATCCTGC-----------AG------CAGCAGAGGCAGTTGAAAAATAC---------------------------------------------CCAG--------------------------CAGCA---GCAGTCTCAGCAGCAGCAACAAA-----------------------------------------------------------------------------------------------------------------------------TTC------------AAATGATTC-------------------AG-----------------------CA-GCAGCAACAGCAGCAGCAGCAG---CAGA---CTCTCATG------------------------CAGCAGGA---GCAACCGCA
droEug1	scf7180000409554:225890-226077 -		TTTGTTGCAGCAACAGCAGAA-------ACAACAGCTGTTGGT--------------------T-----CCTGAGAATGCCAGTGAG-----------------------TAGTAGGGAATGTTGCCTTTGTTTT-TATTTAGGAATTTC-----------ATTTCATTCTTTATCTCA-----------------------------A-----------------TAAT----------------------------------------------------------------------A-------------TTCT-------------------------TT--ATC------------CAAAATTTC-------------------AG-----------------------CTGGCATGAATGCGGGCTTAAACAACATCGGCTCGTTGCTCAA------------------------CA-------------CGACG
dm3	chr2L:9242880-9243042 +		TTTATTGCAGCAACAGCAAAA-------GCAACAATTGCTCGT--------------------T-----CCGGAGAATGCGAGTGAG-----------------------TATTGGGGAA-------------------------------------------------------------------------------------------A-------------------------------------------------CT---------------------CTAATTTACAATTGATTATTAAA-------CTTA-------------------------TTGTGTC------------TTATATTTT-------------------AG-----------------------CTGGCATGAATGCGGGCTTGAACAACATTGGCTCGCTTCTCAA------------------------CA-------------CGACG
droSim2	2l:8935604-8935773 +	dsi_2215	TTTATTGCAGCAACAGCAAAA-------GCAGCAATTGCTTGT--------------------T-----CCTGAGAATGCGAGTGAG-----------------------TATTGGGGAATGT------------------------------------------------------------------------------------TAAAG-------------------------------------------------CT---------------------CTAATTTACAATTTACAAAT---ATTCGTA-----------------------------TTGTGTC------------TAATATTTT-------------------AG-----------------------CTGGCATGAATGCGGGCTTGAACAACATTGGCTCGCTTCTCAA------------------------CA-------------CGACG
droSec2	scaffold_3:4701851-4702020 +		TTTATTGCAGCAACAGCAAAA-------GCAGCAATTGCTTGT--------------------T-----CCTGAGAATGCGAGTGAG-----------------------TATTGGGGAATGT------------------------------------------------------------------------------------TAAAG-------------------------------------------------CT---------------------CTAATTTACAATTTACAAAT---ATTCGTA-----------------------------TTGTGTC------------TAATATTTT-------------------AG-----------------------CTGGCATGAATGCGGGCTTGAACAACATTGGCTCGCTTCTCAA------------------------CA-------------CGACG
droYak3	2L:11910085-11910298 +		TTTACTGCAGCAACAGCAGAA-------GCAGCAAATGCTCGT--------------------T-----CCCGAGAATGCCAGTGAG-----------------------TATAAGGGAATGCTGTCTTTAGTTT-TAT----------------------------------------------G---------------------------------TT---------TGATTTGCCGACTTTT-AAAAGAATTAGTGAGCCTGGTTTGAAAT-TGGA-------------------TTATTAAG-------CATA-------------------------TTGTGTC------------TTTCCTTTT-------------------AG-----------------------CTGGCATGAATGCGGGCTTGAACAACATTGGCTCGCTTCTCAA------------------------CA-------------CGACG
droEre2	scaffold_4929:9848444-9848612 +		CTTGTTGCAGCAACAGCAGAA-------GCAGCAAATGCTCGT--------------------T-----CCCGAGAATGCCAGTGAG-----------------------TATTTGCT----------------------------------------------------------------------------------------------------------------CGGTTTGCCACGTTTTCAAGA-------------------------TAGA-------------------TTATTAAA-------CATTTTGCT------------------------TCC------------TCCTGTTTT-------------------AG-----------------------CTGGCATGAATGCGGGCCTGAACAACATTGGCTCGCTTCTCAA------------------------CA-------------CGACG
dp5	4_group3:10410404-10410555 -		GCTGCAGCAGCTGTATCCGCC-------GCGGTCGTT---CGC------------------------------------------------------GCA-----------------------CC-----------------------CCGC----CTTGCCCAT--------------------------CACCAGCGTCACG--CTGATGCCGCAACTGTGCCACCCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------TG-----------------------CCACACTGTATGCGGGCCCGAACGGCATCAAG--------CAG------------------------GA-------------GTACG
droPer2	scaffold_8:1623530-1623681 -		GCTGCAGCAGCTGTATCCGCC-------GCGGTCGTT---CGC------------------------------------------------------GCA-----------------------CC-----------------------CCGC----CTTGCCCAT--------------------------CACCAGCGTGACG--CTGATGCCGCAACTGTGCCACCCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------TG-----------------------CCACGCTGTATGCGGGCCCGAACGGCATCAAG--------CAG------------------------GA-------------GTACG
droWil2	scf2_1100000004521:248254-248447 +		CCTTCTGCAACAGCAACAGAA-------GCAACAGATGCTTGT--------------------G-----CCCGAGAATGCCAGTGAG-----------------------TATGGGCCAT---------------------------------------------------------------------------------GAG--ATAATCAATCGATAATCCAATCCA--ATT--------------------------CA---------------------TTCATCTGAAATTGAAAACT---AATTCTT-----------------------------TTTCGT-TTCTTTTTCGAC----------------------------AG-----------------------CTGGCATCAATGCAGGAATTAATAATATTAGCTCTCTGCTAAA------------------------TG-------------CCACT
droVir3	scaffold_12963:8861268-8861434 +		CGCAGAGCAGCATCAACAGCAACAATCAGCAGCCGTTG----C--------------------T-----CTCGGGCAT-------------------GGA-----------------------TGCCG--------------------------------------------TTGCGAACAGCATGCTCAACAGCAACTC--------------G----GA---CTCGGC----------------------------------------------------------------------G-------------CACA-------------------------CC--ACG------------CACCATG-TGAGCGGCGTGGATGTGGGT---------------------------------------CTCTTTGACAACAATTCGATGAGCTCGAC------------------------CA-------------GTGCG
droMoj3	scaffold_6359:3219781-3219950 +		CCAGCAGCAGCAACAGCAACA-------TCAGCAATAGCAACA--------------------A-----CCCAAA---GCAAAGTGA-----------------------GTTT-----------------------------G------------------------------------AGTTTC---------------TGA--A-----------------------CAATCTGTGTTGT---------------------------------------A-----ATTATAATAAATTTATA--TTTCGTA-----------------------------TTGCAGC------------TTATGCCAG-------------------CT-----------------------TTACCAAAAAAG-ATGTCACAGCAGCATCAATTTCCTCATC--------------------------CT-------------CCTCC
droGri2	scaffold_14906:1820182-1820333 +		GCAGCAGCAGCAACAGCAGCA-------GCAGGCTTTGCACTT--------------------G-----GCTGC-------AGT-------------GCA-----------------------TCCTG--------------------------------------------CACCGCATCATCTGCACAAGAGCAGCTCCAGG--CTGA-------G--------------------------------------------------------T---AACT--------------------------TTAGT------------------------------------------------------------------------------------------------------GTTGCGTCACTGCTGGCGGACACACGACCG---CGCA--------------------------------CCCCGAACACTAACAGCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TTTGCTGCAGCAGCAACAAAA-------GCAGCAGCTACTCGT--------------------C-----CCAGAGAATGCCAGTGAG-----------------------TTAT------------------------------------------------------------------AATTTTTAAAAGA-----ATGATTTTC------CGGAA--------------------------------------------------------TAAAGACTATAT-------------------------------------ATTTTAAATTCCAATTT--------------------------------------------------AG-----------------------CTGGCATCAATGCGGGCCTCAACAACATCAACTCGCTGATGAA------------------------CA-------------CTACG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAACAACATCAACTCGCTG.................................................	21	1	1.00	1	1	0	0	0	0	0
...................AA-------GCAGCAGCTACTCGT--------------------C-----CCAGAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCTCAACAACATCAACT......................................................	20	1	1.00	1	0	1	0	0	0	0
............................GCAGCAGCTACTCGT--------------------C-----CCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

TCTGCTGCAGCAGCAACAGAA-------GCAGCAGCTACTCGT--------------------C-----CCAGAGAATGCCAGTGAG-----------------------TAGA------------------------------------------------------------------CATTTTTATAAGA-----AAGGTTTTC------CAAAG--------------------------------------------------------T---AACTATA-----------------------------------------------------------------------------TATCCTTCC-------------------AG-----------------------CTGGCATCAATGCGGGCCTCAACAACATCAACTCGCTGATGAA------------------------CA-------------CGACG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTGCTGCAGCAGCAGCAGAA-------GCAGCAGCTGCTCGT--------------------C-----CCGGAGAATGCCAGTAAG-----------------------TATTGGGAAG-----------------------------------------------------------------------------------------AAG------------------------------CTTTCAAAG-------------------------GAGACCACCTAACCCACAA-----------A-------CTCATCTCT------------------------T--------------CATCCTTGT-------------------AG-----------------------CTGGCATGAATGCGGGCCTGAACAACATTGGCTCGCTGCTCAA------------------------TA-------------CCACG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACAACAGCAGCAGCAACAACA-------ACAGCAACAGCAGGCTACGAGTAGCAATGCTTTGGC-----TAAGACTTTACCAGTGGCTCTTCGCAACGGA-----------------------ACCCAACAATTCTTAT------CACCCAACTTGCTTGCCCAA--------------------------CAACAGCAGCA---------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAATTGGAGCAG---CAACAGCA----------GCA------------------------GG-------------CTGTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATAA---------------------------------TTTGT--------------------T-----CCGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATGTAAAT-----GT------CAAAA---AT-----------------------------------------------------TCCCATTTT-------------------AG-----------------------CTGGCATGAACGCGGGCTTGAACAACATTGGCTCTTTGCTGAA------------------------CA-------------CGACG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GATCCAACAGCAGCAGCAACA-------TCGCCAGGTGATGAT--------------------C-----AACAACAATGCCAAGTAT-----------------------GCCAAGG------------------------------------------------------------------ATC---------------TAG--A-----------------------CTA--------------------------------------------------------------------------------------------------------------TTTCGA-GACGTTGCAGGA----------------------------AACAGGAGTCACCAATAAAGTGTAAGT----------------------ACATTAAATCCCTGGCTGTAAATTATACAGTCAACATAATGCA--ACTATATAATAAATATTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAGCCACAACAGCAAGCAA--------CCAGTAGCAACGC-----------------TTTGAC-----CAAGACATTACCAGTGGCTCTACGCAACGGA-----------------------GGACAACAGTTCTTGT------CTCCCAATTTGCTTGCCCAA--------------------------CAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGCAACAGCAACTGGAGCAG------CAGGCTGCTGCA------------------------CAA------------CAAAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCTGCAGCAGCAGCCACCAAA-------TCAGCAGCAGATCAA--------------------AAATATCCTGC-----------AG------CAGCAGAGGCAGTTGAAAAATAC---------------------------------------------CCAG--------------------------CAGCA---GCAGTCTCAGCAGCAGCAACAAA-----------------------------------------------------------------------------------------------------------------------------TTC------------AAATGATTC-------------------AG-----------------------CA-GCAGCAACAGCAGCAGCAGCAG---CAGA---CTCTCATG------------------------CAGCAGGA---GCAACCGCA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTTGTTGCAGCAACAGCAGAA-------ACAACAGCTGTTGGT--------------------T-----CCTGAGAATGCCAGTGAG-----------------------TAGTAGGGAATGTTGCCTTTGTTTT-TATTTAGGAATTTC-----------ATTTCATTCTTTATCTCA-----------------------------A-----------------TAAT----------------------------------------------------------------------A-------------TTCT-------------------------TT--ATC------------CAAAATTTC-------------------AG-----------------------CTGGCATGAATGCGGGCTTAAACAACATCGGCTCGTTGCTCAA------------------------CA-------------CGACG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTTATTGCAGCAACAGCAAAA-------GCAACAATTGCTCGT--------------------T-----CCGGAGAATGCGAGTGAG-----------------------TATTGGGGAA-------------------------------------------------------------------------------------------A-------------------------------------------------CT---------------------CTAATTTACAATTGATTATTAAA-------CTTA-------------------------TTGTGTC------------TTATATTTT-------------------AG-----------------------CTGGCATGAATGCGGGCTTGAACAACATTGGCTCGCTTCTCAA------------------------CA-------------CGACG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................ATTAAA-------CTTA-------------------------TTGTGTC------------TTATATTTT-------------------AG-----------------------.......................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAATGCGGGCTTGAACA...............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTTATTGCAGCAACAGCAAAA-------GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATTGCTCGT--------------------T-----CCGGAGAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GTGAG-----------------------TATTGGGGAA-------------------------------------------------------------------------------------------A-------------------------------------------------CT---------------------CTAATTTA..................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................A-------------------------TTGTGTC------------TTATATTTT-------------------AA-----------------------.......................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTGCTCGT--------------------T-----CCGGAGAATGCGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACAACATTGGCTCGC...................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCGGGCTTGAACAACATTGGC.......................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................CTTA-------------------------TTGTGTC------------TTATATTTT-------------------................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTTATTGCAGCAACAGCAAAA-------GCAGCAATTGCTTGT--------------------T-----CCTGAGAATGCGAGTGAG-----------------------TATTGGGGAATGT------------------------------------------------------------------------------------TAAAG-------------------------------------------------CT---------------------CTAATTTACAATTTACAAAT---ATTCGTA-----------------------------TTGTGTC------------TAATATTTT-------------------AG-----------------------CTGGCATGAATGCGGGCTTGAACAACATTGGCTCGCTTCTCAA------------------------CA-------------CGACG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGGCTTGAACAACATTGGCT......................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCGGGCTTGAACAAC.............................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTCGCTTCTCAA------------------------CA-------------C....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAACAACATTGGCTCC....................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TTGTGTC------------TAATATTTT-------------------AG-----------------------.......................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTTATTGCAGCAACAGCAAAA-------GCAGCAATTGCTTGT--------------------T-----CCTGAGAATGCGAGTGAG-----------------------TATTGGGGAATGT------------------------------------------------------------------------------------TAAAG-------------------------------------------------CT---------------------CTAATTTACAATTTACAAAT---ATTCGTA-----------------------------TTGTGTC------------TAATATTTT-------------------AG-----------------------CTGGCATGAATGCGGGCTTGAACAACATTGGCTCGCTTCTCAA------------------------CA-------------CGACG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................GTGAG-----------------------TATTGGGGAATGT------------------------------------------------------------------------------------TAAAG-------------------------------------------------.................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATGCGGGCTTGAACAACA............................................................	22	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGAACAACATTGGCTCGCTTC................................................	25	1	1.00	1	0	0	0	1

droYak3

TTTACTGCAGCAACAGCAGAA-------GCAGCAAATGCTCGT--------------------T-----CCCGAGAATGCCAGTGAG-----------------------TATAAGGGAATGCTGTCTTTAGTTT-TAT----------------------------------------------G---------------------------------TT---------TGATTTGCCGACTTTT-AAAAGAATTAGTGAGCCTGGTTTGAAAT-TGGA-------------------TTATTAAG-------CATA-------------------------TTGTGTC------------TTTCCTTTT-------------------AG-----------------------CTGGCATGAATGCGGGCTTGAACAACATTGGCTCGCTTCTCAA------------------------CA-------------CGACG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACAACATTGGCTCGCTT.................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCATGAATGCGGGCTTGA..................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........AGCAACAGCAGAA-------GCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CTTGTTGCAGCAACAGCAGAA-------GCAGCAAATGCTCGT--------------------T-----CCCGAGAATGCCAGTGAG-----------------------TATTTGCT----------------------------------------------------------------------------------------------------------------CGGTTTGCCACGTTTTCAAGA-------------------------TAGA-------------------TTATTAAA-------CATTTTGCT------------------------TCC------------TCCTGTTTT-------------------AG-----------------------CTGGCATGAATGCGGGCCTGAACAACATTGGCTCGCTTCTCAA------------------------CA-------------CGACG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACAACATTGGCTCGCC..................................................	20	1	1.00	1	0	1	0	0	0	0	0
.........GCAACAGCAGAA-------GCAGCAAATGCTCGT--------------------T-----.................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATGCGGGCCTGAACAACA............................................................	22	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACAACATTGGCTCGCTT.................................................	21	1	1.00	1	1	0	0	0	0	0	0

dp5

GCTGCAGCAGCTGTATCCGCC-------GCGGTCGTT---CGC------------------------------------------------------GCA-----------------------CC-----------------------CCGC----CTTGCCCAT--------------------------CACCAGCGTCACG--CTGATGCCGCAACTGTGCCACCCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------TG-----------------------CCACACTGTATGCGGGCCCGAACGGCATCAAG--------CAG------------------------GA-------------GTACG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTGTATGCGGGCCCGAAC................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	3	0

droPer2

GCTGCAGCAGCTGTATCCGCC-------GCGGTCGTT---CGC------------------------------------------------------GCA-----------------------CC-----------------------CCGC----CTTGCCCAT--------------------------CACCAGCGTGACG--CTGATGCCGCAACTGTGCCACCCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------TG-----------------------CCACGCTGTATGCGGGCCCGAACGGCATCAAG--------CAG------------------------GA-------------GTACG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................CCCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------................................................................................................................	24	1	13.00	13	0	13	0	0	0	0
..................................................................................................................................................................................................................................CCCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------TG-----------------------C......................................................................................	27	1	9.00	9	0	9	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCTGTATGCGGGCCCGAACGG..............................................................	24	1	4.00	4	0	4	0	0	0	0
..................................................................................................................................................................................................................................CCCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------TG-----------------------.......................................................................................	26	1	3.00	3	0	3	0	0	0	0
..................................................................................................................................................................................................................................CCCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------T...............................................................................................................	25	1	3.00	3	0	3	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGGGCCCGAACGGCATCAAG--------C..............................................	25	1	2.00	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................CC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------TG-----------------------C......................................................................................	25	1	2.00	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGGGCCCGAACGGCATCAAG--------CA.............................................	26	1	1.00	1	0	1	0	0	0	0
...................................TT---CGC------------------------------------------------------GCA-----------------------CC-----------------------CCGC----CTTGCCCAT--------------------------C......................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................TGATGCCGCAACTGTGCCAAA..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................CCCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTCT................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................CCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATTCTCCACCAGAATCTGAG-----------------------------------------------................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGAG-----------------------------------------------TG-----------------------CCACGCTGTATGCGG........................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................CAT--------------------------CACCAGCGTGACG--CTGATGCCG...............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCTGTATGCGGGCCCGAACG...............................................................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGCGGGCCCGAACGG..............................................................	19	1	1.00	1	0	1	0	0	0	0
...............TCCGCC-------GCGGTCGTT---CGC------------------------------------------------------GCA-----------------------CC-----------------------CCGT----..........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATTCTCCACCAGAATCTGAG-----------------------------------------------TG-----------------------C......................................................................................	23	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGGGCCCGAACGGCATCAAG--------CAA------------------------....................	27	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCTGTATGCGGGCCCGAACGGC.............................................................	25	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCTGTATGCGGGCCCGAACGGCATC..........................................................	28	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................CAT--------------------------CACCAGCGTGACG--CTGATGCCGC..............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................CCC---------------------------------------------------------------------------------------------ATTCTCCACCAGAATCTGAG-----------------------------------------------TG-----------------------C......................................................................................	26	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGCGGGCCCGAACGGCA............................................................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGCGGGCCCGAACGGCATCAA........................................................	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGCGGGCCCGAACGGC.............................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................CG--CTGATGCCGCAACTGTGCCACC..................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................CGCAACTGTGCCACCCC---------------------------------------------------------------------------------------------ATTCTCCA...........................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCCCGAACGGCATCAAG--------...............................................	20	4	0.25	1	1	0	0	0	0	0
...................................................................................................A-----------------------CC-----------------------CCGC----CTTGCCCAT--------------------------CACCAG.................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0
...........................................................................................................................CC-----------------------CCGC----CTTGCCCAT--------------------------CACCAG.................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0
...................................................................................................A-----------------------CC-----------------------CCGC----CTTGCCCAT--------------------------CACCAGC................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0

droWil2

CCTTCTGCAACAGCAACAGAA-------GCAACAGATGCTTGT--------------------G-----CCCGAGAATGCCAGTGAG-----------------------TATGGGCCAT---------------------------------------------------------------------------------GAG--ATAATCAATCGATAATCCAATCCA--ATT--------------------------CA---------------------TTCATCTGAAATTGAAAACT---AATTCTT-----------------------------TTTCGT-TTCTTTTTCGAC----------------------------AG-----------------------CTGGCATCAATGCAGGAATTAATAATATTAGCTCTCTGCTAAA------------------------TG-------------CCACT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTAATAATATTAGC.......................................................	19	1	1.00	1	0	0	0	1	0
..................................................................................GTGAG-----------------------TATGGGCCAT---------------------------------------------------------------------------------GAG--AT......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0

droVir3

CGCAGAGCAGCATCAACAGCAACAATCAGCAGCCGTTG----C--------------------T-----CTCGGGCAT-------------------GGA-----------------------TGCCG--------------------------------------------TTGCGAACAGCATGCTCAACAGCAACTC--------------G----GA---CTCGGC----------------------------------------------------------------------G-------------CACA-------------------------CC--ACG------------CACCATG-TGAGCGGCGTGGATGTGGGT---------------------------------------CTCTTTGACAACAATTCGATGAGCTCGAC------------------------CA-------------GTGCG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................ATG-TGAGCGGCGTGGATGTGGGT---------------------------------------.........................................................................	23	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATCAACAGCAACAATCAGCAGCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ACTC--------------G----GA---CTCGGC----------------------------------------------------------------------G-------------CACA-------------------------CC--A..........................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTCGAC------------------------CA-------------GTGCG	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................G------------CACCATG-TGAGCGGCGTGGAT......................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AATCAGCAGCCGTTG----C--------------------T-----CTCGGGCAT-------------------G....................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ACAATCAGCAGCCGTTG----C--------------------T-----.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCAGCCGTTG----C--------------------T-----CTCGGGCAT-------------------GGA-----------------------C..........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AGCAACTC--------------G----GA---CTCGGC----------------------------------------------------------------------G-------------CACA-------------------------C..............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................G-------------CACA-------------------------CC--ACG------------CACCATG-TGAGCG..............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGCAGCCGTTG----C--------------------T-----CTCGGGCAT-------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................G------------CACCATG-TGAGCGGCGTGGATGTGGGT---------------------------------------.........................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................CATG-TGAGCGGCGTGGATGTGG..................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................C--------------G----GA---CTCGGC----------------------------------------------------------------------G-------------CACA-------------------------CC--ACG------------............................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GCGAACAGCATGCTCAAC......................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CACCATG-TGAGCGGCGTGGATG.....................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CAGCATGCTCAACAGCAACTC--------------G----GA---CTCG..................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GCAACTC--------------G----GA---CTCGGC----------------------------------------------------------------------G-------------C...........................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................G------------CACCATG-TGAGCGGCGTGGATGTGG..................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ACAGCATGCTCAACAGCAACTC--------------G----GA---CTC...................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TG----C--------------------T-----CTCGGGCAT-------------------GGA-----------------------TGCCG--------------------------------------------TTGC......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................GCTCAACAGCAACTC--------------G----GA---CTCGGC----------------------------------------------------------------------..........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATGAGCTCGAC------------------------C...................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATTCGATGAGCTCGAC------------------------....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTTGACAACAATTCGAT.....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GGCGTGGATGTGGGT---------------------------------------CTC......................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................G----C--------------------T-----CTCGGGCAT-------------------GGA-----------------------TGCCG--------------------------------------------TTG.......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGATGAGCTCGAC------------------------C...................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GA---CTCGGC----------------------------------------------------------------------G-------------CACA-------------------------CC--ACG------------CACC........................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AACTC--------------G----GA---CTCGGC----------------------------------------------------------------------G-------------CACA-------------------------CC--ACG------------CACC........................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GCATGCTCAACAGCAACTC--------------G----...........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................C--------------G----GA---CTCGGC----------------------------------------------------------------------G-------------CACA-------------------------CC--AC.........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CAGCATCAACAGCAACAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCAGCAGCAGCAACAGCAACA-------TCAGCAATAGCAACA--------------------A-----CCCAAA---GCAAAGTGA-----------------------GTTT-----------------------------G------------------------------------AGTTTC---------------TGA--A-----------------------CAATCTGTGTTGT---------------------------------------A-----ATTATAATAAATTTATA--TTTCGTA-----------------------------TTGCAGC------------TTATGCCAG-------------------CT-----------------------TTACCAAAAAAG-ATGTCACAGCAGCATCAATTTCCTCATC--------------------------CT-------------CCTCC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GCAGCAGCAGCAACAGCAGCA-------GCAGGCTTTGCACTT--------------------G-----GCTGC-------AGT-------------GCA-----------------------TCCTG--------------------------------------------CACCGCATCATCTGCACAAGAGCAGCTCCAGG--CTGA-------G--------------------------------------------------------T---AACT--------------------------TTAGT------------------------------------------------------------------------------------------------------GTTGCGTCACTGCTGGCGGACACACGACCG---CGCA--------------------------------CCCCGAACACTAACAGCG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...GCAGCAGCAACAGCAGCA-------GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0
...GCAGCAGCAACAGCAGCA-------G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0

dan_882

scaffold_12943:583091-583157 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads