dan_877

exon [dana_GLEANR_674:4]; CDS [Dana\GF22701-cds]; CDS [Dana\GF22701-cds]; exon [dana_GLEANR_674:3]; intron [Dana\GF22701-in]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------######-------------------------------------------- GATGTGTTCTCTGCTCCGGCAATAAGTGTAACAAGAATCCGGCTGGAAAAGTAAGCAGCAGCAGCATAACCATAGCAGCTAGTATTGTGGGCATAGTATTGGCTAAGATCTATGCATAGAATATATTATAAGCTTAGGAAATAAACCGAAAAAATACTTTTTTTTTTATAAATTATAGAACTAATTTCATGCGGTTCTTATCACATTTTCGATAAGATTAGGTTTTTG ************************************************.............(((((...((...((((((((((((....))))))))))))...)).))))).......********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	V105 male body	V106 head	M044 female body
.....GTTCTCTGCTCCGGCAATAAGTGTAAC....................................................................................................................................................................................................	27	0	1	2.00	2	2	0	0	0	0
..................................................GTAAGCAGCAGCAGCATAACCATAGC........................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0
.....................ACAAGTGTAACAAGAATCCGGCT........................................................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0
.....................TTAAGTGTAACAAGAATCCGGCT........................................................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0
..................................................................................................TTGGCTAATATCTATGCAT...............................................................................................................	19	1	1	1.00	1	0	1	0	0	0
............................................GGAAAAGTAAGCAGCAGCAGCATAAC..............................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
................................................................................................TATTGGCTAAGATCTATGCATAGAAT..........................................................................................................	26	0	1	1.00	1	1	0	0	0	0
.....GTTCTCTGCTCCGGCAATAAGT.........................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
......................................................................................................................GAATATATTATAAGCTTAGGAAATAAACC.................................................................................	29	0	1	1.00	1	1	0	0	0	0
..............................................................AGCATAACCATAGCAGCTAGT.................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
..........................................................................GCAGCTAGTATTGTGGGCATAGTATT................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
.................................................................................................ATTGGCTAAGATCTATGCATAGAA...........................................................................................................	24	0	1	1.00	1	0	0	1	0	0
.......................................................................ATAGCAGCTAGTATTGTGGGC........................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
...................................AATCCGGCTGGAAAAGTAAGCA...........................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
..................................................................................................TGGGCTAAGATCTATGCATAGAAT..........................................................................................................	24	1	1	1.00	1	1	0	0	0	0
...................................................................................ATTGTGGGCATAGTATTGGC.............................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
.......................................................................ATAGCAGCTAGTATTGTGGG.........................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................CTAATTTCATGCGGTTCTT.............................	19	0	1	1.00	1	1	0	0	0	0
...................................................................AACCATAGCAGCTAGTATT..............................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0
....................................................AAGCAGCAGCAGCATAACC.............................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................TATATTATAAGCTTAGGAAAT......................................................................................	21	0	1	1.00	1	1	0	0	0	0
..................................................................................TATTGTGGGGATTGTACTGGC.............................................................................................................................	21	3	5	0.20	1	0	0	0	0	1
.............................................GAAAAGTAAGAAGCAGCAC....................................................................................................................................................................	19	2	6	0.17	1	1	0	0	0	0
........................................................................................................................................................................................TTCTATGCGTTTCTTATCACA.......................	21	3	7	0.14	1	0	0	0	0	1
................................AAGAGTCCGGCGGGAAAAGC................................................................................................................................................................................	20	3	12	0.08	1	1	0	0	0	0
..............................................................................................................TATGCATAGCATATTCTATA..................................................................................................	20	3	20	0.05	1	0	0	0	0	1

CTACACAAGAGACGAGGCCGTTATTCACATTGTTCTTAGGCCGACCTTTTCATTCGTCGTCGTCGTATTGGTATCGTCGATCATAACACCCGTATCATAACCGATTCTAGATACGTATCTTATATAATATTCGAATCCTTTATTTGGCTTTTTTATGAAAAAAAAAATATTTAATATCTTGATTAAAGTACGCCAAGAATAGTGTAAAAGCTATTCTAATCCAAAAAC ********************************************************************************************************.............(((((...((...((((((((((((....))))))))))))...)).))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	M058 embryo	V055 head
................................................................................................................................................................................................................AGCCAGTCTAATCCAAAAA.	19	2	3	0.67	2	1	1	0
.................................................................................................................................................................................................................GCCATTCTAATCCAAAAAT	19	2	3	0.33	1	1	0	0
............................................................................................................................................................................................TACGCCAAGAAGGCTGTAA.....................	19	3	15	0.07	1	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_12943:346682-346909 +	dan_877	GATGTGTTCTCTGCTCCGGCAATAAGTGTAACAAGAATCCGGCTGGAAAAGTAAGCAGCAGCAGCATAACCATAGCAGCTAGTATTGTGGGCATAGTATTGGCTAAGATCTATGCATAGAA-TAT---------A----------TT--------ATAAGCTTAGGAAATAAACC----G---A--A-------------AAAATACTTTTTT--TTTTATAAATTATAGAACTAATTTCA-TGCGGTTCTTATCACATT-T---------------------TC-GATAAGATTAG-GTTTTTG
droBip1	scf7180000396535:366065-366298 -		GGTGTAACATCTGCTCGGGCAACAAGTGCAACAAGAATCCGGCCGGAAAAATAAGCAGCAGCAGCATTACCATTGCAGCCAGCATTGTGGGCCTCGTTTTGGCCAAGATCTACGCCTAGAA-TGT---------AA----CTATTTA--TAATG-ATGAGCTAAGGACAAAAACC----T---A-TACAACTCTTTTAATAAATTATTG---------------------AACTAAATTCA-TTTGGTTCTTATCACATT-T---------------------TA-GATTAGATTAG-CTCTTTG
droKik1	scf7180000302684:580618-580877 +		AATGTCTGACCTGCTCCGGCGATAAGTGCAACAAGAGTCCCGCCGGAAAGATGAGCAGCAGCACTGTGACCATTGCGGCTAGCGTGTTTGGTCTCTTGCTGGTCAAGATCTATGTGTAGAA-GAC---------AAGCCTGTATTAATTTAGTG-ATGAGCTAAGAACAAGAGAT----C---G-GAGTCGTCTGTTAATAAATTAATTCTTTTTTTAGATGTTTTT--GTACAACTTTCA-TGTGCTTCTTATCAAATGGC---------------------TC-GATTAGATTGA-CTTCTTG
droFic1	scf7180000449914:26816-27060 +		GTTGCCTAACCTGTTCCGGTGATAAGTGCAACAAAAGTCCTGCTGGGAAAATGAGCAGCAGCACCTTCACCATTGCTGCAAGTGTTTTGGGTCTCTTGCTGGTCAAGATCTTGGCCTAAAA-TAA---------GA----CTATTTA--TAAAG-ATGAGCTCAACACCACAGTG----G---A--AAATATTTCGTAATAAATTATTTT-TTTGTTAAATGTCTCT---TTT----------TT-----------------AATTTCGGT-TCTTATCAAATAT-GATTAGATTGT-CTTTTCG
droEle1	scf7180000491186:1906728-1906966 +		CGTGTGTAACCTGTTCCGGCGACAAGTGCAACAAGAATCCGGCGGGAAAAATGAGCAGCAGCACGATCACAATTGCGGCTAGCGTTTTGGGTCTCTTGCTGTTCAAGATTTATGCCTAGAG-CAC---------GA----CTATTAA--TATAG-ATGAGTTAAAAGCACCGAAC----G--------AAATTTCGTAATAAGTTATTTT-----TCCAATATCTTC---TCTA-------ATTTGTTATTG--------------------GCTTATCAGCATT-GATTAGATTGA-GTTCTTG
droRho1	scf7180000777214:253562-253803 -		ACTGTCTTACCTGTTCCGGCAATAAGTGCAACAAGAATCCGGCGGGAAAAATGAGCAGCAGCACACTCACAATTGCGGCTAGCGTTTTGGGTCTCTTGCTGGTCAAGATCTTTGCCTAAAA-CAA---------GA----CTATTTA--TATAG-ATGAGCTAAAATTCTGAAAA----C----GAAATTATTTCGTAATAAATTATTTT-----TAAAATATCTCC---TATT----------------------------ATTTTTGTTTCCTTATCGGCATT-GATTAGATTGG-CTTCTTG
droBia1	scf7180000302408:4224789-4225031 -		ACTGCAACATCTGTTCGGGGGATAAGTGCAACAAGAACCCAGCTGGAAAAATGAGCAGCAGCACGGTCACCATTACTGCTGGTATCTTGGCTCTCTTGCTGGCCAAGATCTTCGCCTAGAG-CGC---------TC----CTACCTA--TAAAG-ATGAGTTAAGCACATCACTC----G---A--TACCTTTCCTTAATAAATTATTTC-CCTTTCGAATGTCTTC---TAT-----------------------------AAGTTAGTT-GCTTATCAAATAC-GATTAGATTAG-ACTCTTG
droTak1	scf7180000415702:548704-548949 -		ACTGCACGGTCTGTTCGGGCGATAAGTGCAACAAGAATCCGGCTGGAAAAATGAGCAGTAGCTCCATCACCATTGCGGCCAGTGTTGTGGGTCTCTTGCTGGCCAAGATCTTTGCCTAGGG-CGG---------AA----CTATTAA--TATAG-ATGAGTTAAGAACATCAGAC----CATGA--TACCATGCCATAATAAATTATTTT--TTTTCGAATAAATCT---TAT-----------------------------AATTTTGTT-TCTTATCAACTTC-GATTAGATTAGACTTCATG
droEug1	scf7180000409554:471476-471702 -		TTTGTAAGATCTGTTCCGGCGATAAGTGCAACAAGAATCCGGCTGGAAAGATGAGCAGCAGCACCATCACCATTGCGGCAAGCATTCTGGGTCTCTTGCTGGTCAAGATCTATGCTTAGAG-TGT---------GA----CTATTTA--TAGAG-ATGAGTTAAGAACATAGGAC----C---A--TAGCATTTTGTAATAAATTATTTT-----T-----GTCTTT---AGT-----------------------------AACTTTGTT-TCTTATCAACTTTCGATTAGATTG---------
dm3	chr2L:9012725-9012843 +		GGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCGGAAAGATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTCTTGCTGGTCAAGATGTATGCCTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2l:8711084-8711202 +		GGTGTTCCACCTGTTCGGGCAACAAGTGCAACAAGAATCCGGCCGGAAAGATGAGCAGCAGCAATATCGCCATCGCGGCCAGCGTTCTGGGTCTCTTGCTGGTCAAGATGTATGCCTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_3:4478908-4479026 +		GGTGTCTCACCTGTTCGGGCAACAAGTGCAACAAGAATCCGGCCGGAAAGATGAGCAGCAGCAATATCGCCATCGTGGCCAGCGTTCTGGGTCTCTTGCTGGTCAAGATGTATGCCTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2L:11672416-11672644 +		GTTGTCTCACCTGTTCGGGTGACAAGTGCAACAAGAATCCGGCCGGAAAGATGAGCAGCAGCACCATCACCATAGTGGCCAGCGTTCTGGGTCTCTTGCTGGTCAAGATCTATGCCTAGTG-C-----------GA----CTATTAA--TATAG-ATGAGCTCGA---------------------GGCTATGCCATAATAAATTATTTC-TTTTTCGTATGTCTCA---TAG-----------------------------AATTTCGTT-TCTTATCACCATT-GATTAGATTGG-CTTCTTG
droEre2	scaffold_4929:9612170-9612396 +		GGTGTCTGACCTGTTCGGGTGACAAGTGCAACAAGAGTCCGGCCGGCAGGATGAGCAGCAGCACCATCACCATAGTGGCCAGCGTTCTGGGTCTCTTGCTGGTCAAGATCTATGCCTAGTG-CGA---------G-------ATTGG--TGTAG-ATGAACTCGG---------------------AGCTATGTCGTAATAAATTATTTC-CTTTTCGAATGTCTTA-----AG----------------------------AGTTTTGCT-TCTTATCGCCATT-GATTAGATTGA-CTTCTTG
dp5	4_group5:1293788-1294028 +		ACTGCCGCACCTGCTCGGGGGATAAGTGCAACAAGAGTCCGGCGGGAAAAGTGAGCAGCAGCATCTACACAATTCTAGCCGGCGTTGTGGGCCTGCTGTTGGTCAAAACTTATGCCTAGA--------------------CTATTTT--TAAAG-ATGAACTAAAAAGAG---AGTATAG----AGAACAAATTTTTAATAAATTATTTT-----TGGTATAAGCGAC-------AGCTCATTTTGCTCCTTATCTCTGT-T-------------------CAAT-GATTAGATTGC-CTTCTTG
droPer2	scaffold_5:5700616-5700856 +		ACTGCCGCACCTGCTCGGGGGATAAGTGCAACAAGAGTCCGGCGGGAAAAGTGAGCAGCAGCATCTACACAATTCTAGCCGGCGTTGTGGGCCTGCTGTTGGTCAAAACTTATGCCTAGA--------------------CTATTTT--TAAAG-ATGAACTAAAAAGAG---TGTATAG----AGAACAAATTGTTAATAAATTATTTT-----TGGTATAAGCGAC-------AGCTCATTTTGCTCCTTATCTCTGT-T-------------------CAAT-GATTAGATTGC-CTTTTTG
droWil2	scf2_1100000004516:3787777-3787992 +		GGTGCAGCGTGTGTTCCGGTAATAAGTGCAACAAAAATCCAGCCGGTAAAATGAGCAACAGTTTTTACACCATTCTGACTGCAACTGTGGGTCTTGTTTTAGCCAAAATGTATGCTTAATAACAC---------AAAGCATTTCCCTTTGAATACTTAGGTTAAAAAAATAAAAA----T----AAAATTATTTTTACACAAATTTAGTC-----------------------------------------TATCACAAA-T---------------------TC-GATAAGAAT--------TG
droVir3	scaffold_12963:310163-310299 -		GGTGCACCATCTGCTCTGGCAACAAGTGCAACAAGAATCCAGCTGGCAAGCTGAGCAGCAGTGTCTACACAATTGCGGCCACAGTGATATCTCTAATGCTGGCCAAGATCTATGCTTAAAA-TTG---------T-----GT-------------ATAAACTTAG--------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6500:11783320-11783527 +		ATTGTAATGTCTGCTCCGGAAACAAGTGCAACAAGAGTCCAGCTGGCACACTGAGTCGCAGCCACTACACTATCGTGGCCGCTGTCTTGGCCCTGGTGCTGGCCAAGATCTATGCCTAGAA-TATATTCTAAGAAA----CTGTCAA--CATTT-ATTTGTCAATATTGCCTAAC-------------------------------------------------CAAC-------CGTTCA-GCTCTGGCTTATCACATTAT---------------------GC-GATAAGATT----------
droGri2	scaffold_15126:3318837-3318963 -		AGTGCAACACCTGCTCTGGTAACAACTGTAACAAGAGTCCAGCTGGCAAGATGAGCAGCAGCGTCTTCACAATTGCAGCAACCGCATTGGCCGTCATGCTGTCCAAAATCTATGCCTGAAT-GA-----------------------------------ATCA----------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GATGTGTTCTCTGCTCCGGCAATAAGTGTAACAAGAATCCGGCTGGAAAAGTAAGCAGCAGCAGCATAACCATAGCAGCTAGTATTGTGGGCATAGTATTGGCTAAGATCTATGCATAGAA-TAT---------A----------TT--------ATAAGCTTAGGAAATAAACC----G---A--A-------------AAAATACTTTTTT--TTTTATAAATTATAGAACTAATTTCA-TGCGGTTCTTATCACATT-T---------------------TC-GATAAGATTAG-GTTTTTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....GTTCTCTGCTCCGGCAATAAGTGTAAC.................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
..................................................GTAAGCAGCAGCAGCATAACCATAGC.....................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
............................................GGAAAAGTAAGCAGCAGCAGCATAAC...........................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................................................................TATTGGCTAAGATCTATGCATAGAA-T......................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.....GTTCTCTGCTCCGGCAATAAGT......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................................GAA-TAT---------A----------TT--------ATAAGCTTAGGAAATAAACC----..............................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
..............................................................AGCATAACCATAGCAGCTAGT..............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..........................................................................GCAGCTAGTATTGTGGGCATAGTATT.............................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.................................................................................................ATTGGCTAAGATCTATGCATAGAA-.......................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.......................................................................ATAGCAGCTAGTATTGTGGGC.....................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................AATCCGGCTGGAAAAGTAAGCA........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...................................................................................ATTGTGGGCATAGTATTGGC..........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.......................................................................ATAGCAGCTAGTATTGTGGG......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................CTAATTTCA-TGCGGTTCTT.....................................................	19	1	1.00	1	0	1	0	0	0	0
...................................................................AACCATAGCAGCTAGTATT...........................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
....................................................AAGCAGCAGCAGCATAACC..........................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................TAT---------A----------TT--------ATAAGCTTAGGAAAT.......................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

GGTGTAACATCTGCTCGGGCAACAAGTGCAACAAGAATCCGGCCGGAAAAATAAGCAGCAGCAGCATTACCATTGCAGCCAGCATTGTGGGCCTCGTTTTGGCCAAGATCTACGCCTAGAA-TGT---------AA----CTATTTA--TAATG-ATGAGCTAAGGACAAAAACC----T---A-TACAACTCTTTTAATAAATTATTG---------------------AACTAAATTCA-TTTGGTTCTTATCACATT-T---------------------TA-GATTAGATTAG-CTCTTTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AATGTCTGACCTGCTCCGGCGATAAGTGCAACAAGAGTCCCGCCGGAAAGATGAGCAGCAGCACTGTGACCATTGCGGCTAGCGTGTTTGGTCTCTTGCTGGTCAAGATCTATGTGTAGAA-GAC---------AAGCCTGTATTAATTTAGTG-ATGAGCTAAGAACAAGAGAT----C---G-GAGTCGTCTGTTAATAAATTAATTCTTTTTTTAGATGTTTTT--GTACAACTTTCA-TGTGCTTCTTATCAAATGGC---------------------TC-GATTAGATTGA-CTTCTTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTTGCCTAACCTGTTCCGGTGATAAGTGCAACAAAAGTCCTGCTGGGAAAATGAGCAGCAGCACCTTCACCATTGCTGCAAGTGTTTTGGGTCTCTTGCTGGTCAAGATCTTGGCCTAAAA-TAA---------GA----CTATTTA--TAAAG-ATGAGCTCAACACCACAGTG----G---A--AAATATTTCGTAATAAATTATTTT-TTTGTTAAATGTCTCT---TTT----------TT-----------------AATTTCGGT-TCTTATCAAATAT-GATTAGATTGT-CTTTTCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGTGTGTAACCTGTTCCGGCGACAAGTGCAACAAGAATCCGGCGGGAAAAATGAGCAGCAGCACGATCACAATTGCGGCTAGCGTTTTGGGTCTCTTGCTGTTCAAGATTTATGCCTAGAG-CAC---------GA----CTATTAA--TATAG-ATGAGTTAAAAGCACCGAAC----G--------AAATTTCGTAATAAGTTATTTT-----TCCAATATCTTC---TCTA-------ATTTGTTATTG--------------------GCTTATCAGCATT-GATTAGATTGA-GTTCTTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACTGTCTTACCTGTTCCGGCAATAAGTGCAACAAGAATCCGGCGGGAAAAATGAGCAGCAGCACACTCACAATTGCGGCTAGCGTTTTGGGTCTCTTGCTGGTCAAGATCTTTGCCTAAAA-CAA---------GA----CTATTTA--TATAG-ATGAGCTAAAATTCTGAAAA----C----GAAATTATTTCGTAATAAATTATTTT-----TAAAATATCTCC---TATT----------------------------ATTTTTGTTTCCTTATCGGCATT-GATTAGATTGG-CTTCTTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACTGCAACATCTGTTCGGGGGATAAGTGCAACAAGAACCCAGCTGGAAAAATGAGCAGCAGCACGGTCACCATTACTGCTGGTATCTTGGCTCTCTTGCTGGCCAAGATCTTCGCCTAGAG-CGC---------TC----CTACCTA--TAAAG-ATGAGTTAAGCACATCACTC----G---A--TACCTTTCCTTAATAAATTATTTC-CCTTTCGAATGTCTTC---TAT-----------------------------AAGTTAGTT-GCTTATCAAATAC-GATTAGATTAG-ACTCTTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTGCACGGTCTGTTCGGGCGATAAGTGCAACAAGAATCCGGCTGGAAAAATGAGCAGTAGCTCCATCACCATTGCGGCCAGTGTTGTGGGTCTCTTGCTGGCCAAGATCTTTGCCTAGGG-CGG---------AA----CTATTAA--TATAG-ATGAGTTAAGAACATCAGAC----CATGA--TACCATGCCATAATAAATTATTTT--TTTTCGAATAAATCT---TAT-----------------------------AATTTTGTT-TCTTATCAACTTC-GATTAGATTAGACTTCATG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTTGTAAGATCTGTTCCGGCGATAAGTGCAACAAGAATCCGGCTGGAAAGATGAGCAGCAGCACCATCACCATTGCGGCAAGCATTCTGGGTCTCTTGCTGGTCAAGATCTATGCTTAGAG-TGT---------GA----CTATTTA--TAGAG-ATGAGTTAAGAACATAGGAC----C---A--TAGCATTTTGTAATAAATTATTTT-----T-----GTCTTT---AGT-----------------------------AACTTTGTT-TCTTATCAACTTTCGATTAGATTG---------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCGGAAAGATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTCTTGCTGGTCAAGATGTATGCCTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................ATCCGGCCGGAAAGATGAGCAGC......................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0
.....................................TCCGGCCGGAAAGATGAGCAGC......................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0
....................................ATCCGGCCGGAAAGATGAGC.........................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
................................................................................................TGCTGGTCAAGATGTATGCCTA...........................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCAACAAGAATCCGGCCGGAAAGAT.............................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................CTTGCTGGTCAAGATGTATGCCTA...........................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........ACCTGTTCGGGCGACAAGTGC....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................CCGGCCGGAAAGATGAGCAGCAGCAC.................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GCGTTCTGGGTCTCTTGC..............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TGCCATCGCGTCTAGCGTTCTGG.......................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CGCGTCTAGCGTTCTGGGTCT...................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................ATCGCGTCTAGCGTTCTGGGTCTCT.................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................CGGAAAGATGAGCAGCAG....................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AGAATCCGGCCGGAAAGATGAGCAGC......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGTGTTCCACCTGTTCGGGCAACAAGTGCAACAAGAATCCGGCCGGAAAGATGAGCAGCAGCAATATCGCCATCGCGGCCAGCGTTCTGGGTCTCTTGCTGGTCAAGATGTATGCCTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.GTGTTCCACCTGTTCGGGC.............................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................AGCGTTCTGGGTCTCTTGCT.............................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CAGCGTTCTGGGTCTCTTGCT.............................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GAGCAGCAGCAATATCGCCATCGCGG...................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TGCTGGTCAAGATGTATGCCTA...........................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AATCCGGCCGGAAAGATGAGCAGCG.....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGCAACAAGAATCCGGCCGGAAAG...............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................CAGCAATATCGCCATCGCGGC..................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AATCCGGCCGGAAAGATGAGCAGCA.....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CGTTCTGGGTCTCTTGCT.............................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CACCTGTTCGGGCAACAAGT......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GCAATATCGCCATCGCGGC..................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................ATCGCGGCCAGCGTTCTGGGTCG...................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CAGCAGCAATATCGCCATCGCGGC..................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................GCCGGAAAGATGAGCAGC......................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AATCCGGCCGGAAAGATGAGCAGCAGCA..................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGTGTCTCACCTGTTCGGGCAACAAGTGCAACAAGAATCCGGCCGGAAAGATGAGCAGCAGCAATATCGCCATCGTGGCCAGCGTTCTGGGTCTCTTGCTGGTCAAGATGTATGCCTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................GAATCCGGCCGGAAAGATGA...........................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0
....................AACAAGTGCAACAAGAATCCGGC......................................................................................................................................................................................................................................................................	23	1	2.00	2	1	1	0	0
.......................AAGTGCAACAAGAATCCGG.......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...............................................AAGATGAGCAGCAGCAAT................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
....................................ATCCGGCCGGAAAGATGAGCAGC......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
................................................................................AGCGTTCTGGGTCTCTTGCTGGTC.........................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
...............................................................................CAGCGTTCTGGGTCTCTTGCTGGTC.........................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
....................AACAAGTGCAACAAGAATCCG........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..................................................................................CGTTCTGGGTCTCTTGCTGGTCAAGAT....................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...................................AATCCGGCCGGAAAGATGAGC.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
................................................................................AGCGTTCTGGGTCTCTTGCTGGT..........................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
....................................ATCCGGCCGGAAAGATGAGC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.GTGTCTCACCTGTTCGGGCAACAAGT......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.GTGTCTCACCTGTTCGGGCAAC..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...GTCTCACCTGTTCGGGCAACAAGT......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..............................................................................................CTTGCTGGTCAAGATGTATGCCTA...........................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.......................................................CAGCAGCAATATCGCCATCGTGGCC.................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
..................................................................................CGTTCTGGGTCTCTTGCTGGT..........................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...............................................................................CAGCGTTCTGGGTCTCTTGCTGGTCAA.......................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
................................................................................................TGCTGGTCAAGATGTATG...............................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
................................................................................................TGCTGGTCAAGATGTATGCCTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	23	1	1.00	1	0	1	0	0
.........................GTGCAACAAGAATCCGGCCGGAAAGAT.............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...................................................................CGCCATCGTGGCCAGCGTTCTGGGTCTCT.................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0
.....................................................................................TCTGGGTCTCTTGCTGGTC.........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...................................................................CGCCATCGTGGCCAGCGTTCT.........................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.............................AACAAGAATCCGGCCGGAAAGATGAGC.........................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.........................GTGCAACAAGAATCCGGC......................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........................GTGCAACAAGAATCCGGCC.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
................................................................TATCGCCATCGTGGCCAGCGTTCTGG.......................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
................................................................................................TGCTGGTCAAGATGTATGCCTA...........................................................................................................................................................................................	22	1	1.00	1	0	0	1	0

droYak3

GTTGTCTCACCTGTTCGGGTGACAAGTGCAACAAGAATCCGGCCGGAAAGATGAGCAGCAGCACCATCACCATAGTGGCCAGCGTTCTGGGTCTCTTGCTGGTCAAGATCTATGCCTAGTG-C-----------GA----CTATTAA--TATAG-ATGAGCTCGA---------------------GGCTATGCCATAATAAATTATTTC-TTTTTCGTATGTCTCA---TAG-----------------------------AATTTCGTT-TCTTATCACCATT-GATTAGATTGG-CTTCTTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................G-ATGAGCTCGA---------------------GGCTATGCC..............................................................................................................	20	1	3.00	3	0	0	1	1	0	0	1	0	0	0	0
.............................AACAAGAATCCGGCCGGAAAGAT.............................................................................................................................................................................................................................................................	23	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
....................GACAAGTGCAACAAGAATCCGGCC.....................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	2	0	0	0	1	0	0	0	0
....................GACAAGTGCAACAAGAATCCGGC......................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	2	0	0	0	1	0	0	0	0
......................................................................................................................................................ATAG-ATGAGCTCGA---------------------GGCTATGCC..............................................................................................................	23	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
..........................................CCGGAAAGATGAGCAGCAGC...................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
....................GACAAGTGCAACAAGAATC..........................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................ATTAA--TATAG-ATGAGCTCGA---------------------GG.....................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................GTTCTGGGTCTCTTGCTGGTC.........................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................G-ATGAGCTCGA---------------------GGCTATGCCATAAT.........................................................................................................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
........................................................................................................................................................AG-ATGAGCTCGA---------------------GGCTATGCCAT............................................................................................................	23	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
.......................................................................ATAGTGGCCAGCGTTCTGGGT.....................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................................................................AG-ATGAGCTCGA---------------------GGCTATGCC..............................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
......................................................................................CTGGGTCTCTTGCTGGTCAA.......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................ATTAA--TATAG-ATGAGCTCGA---------------------G......................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................GAATCCGGCCGGAAAGATGAGC.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................ATAG-ATGAGCTCGA---------------------GGCTATGCCA.............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................AGTG-C-----------GA----CTATTAA--TATAG-ATGAGCT...............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................A--TATAG-ATGAGCTCGA---------------------GGCT...................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................AG-ATGAGCTCGA---------------------GGCTATGC...............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................GCAACAAGAATCCGGCCGGAAAGAT.............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................GCAACAAGAATCCGGCCGGA..................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................G-C-----------GA----CTATTAA--TATAG-ATGAGCTCG.............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................ATTAA--TATAG-ATGAGCTCGA---------------------GGCTATGCC..............................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............GTTCGGGTGACAAGTGCAACAAGAATCC.........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................GACAAGTGCAACAAGAATCC.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................AA--TATAG-ATGAGCTCGA---------------------GGCTATGC...............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................CTGGTCAAGATCTATGCCTAGTG-C-----------GA----CT...................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................ATTAA--TATAG-ATGAGCTCGA---------------------GGCTATGCCA.............................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................CTGGTCAAGATCTATGCCT............................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................CGTTCTGGGTCTCTTGCTGGC..........................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................CAGCGTTCTGGGTCTCTTGCTGGTCAAG......................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................GAATCCGGCCGGAAAGATGAG..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................GGCCGGAAAGATGAGCAGC......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................AGTGCAACAAGAATCCGGCCGGAAAGATG............................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............TTCGGGTGACAAGTGCAACAAG..............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................CAGCGTTCTGGGTCTCTTGCT.............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................ACAAGAATCCGGCCGGAAAGATGAG..........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................CAAGAATCCGGCCGGAAAGAT.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................ATCACCATAGTGGCCAGCGTTCTGGGT.....................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................TAA--TATAG-ATGAGCTCGA---------------------GGCTATGCC..............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................GAAAGATGAGCAGCAGCACCAT..............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................CGGAAAGATGAGCAGCAGCACC................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................ATCCGGCCGGAAAGATGAGCAGC......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................TAG-ATGAGCTCGA---------------------GGCTATGCC..............................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..TGTCTCACCTGTTCGGGTGACAAGTGC....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................ACCATAGTGGCCAGCGTTCTGGGTCTCC.................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................ATTAA--TATAG-ATGAGCTCGA---------------------GGCTATGC...............................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................TGACAAGTGCAACAAGAATCC.........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................TAG-ATGAGCTCGA---------------------GGCTATGCCAT............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................CCGGAAAGATGAGCAGCA.....................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................GGCCGGAAAGATGAGCAGCAGCACCAT..............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................TGCTGGTCAAGATCTATGCCT............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................GTTCTGGGTCTCTTGCTGGTCAA.......................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................GTGCAACAAGAATCCGGCCGGAA.................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................ATGAGCTCGA---------------------GGCTATGCCATAAT.........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................AATCCGGCCGGAAAGATGAGC.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........CTGTTCGGGTGACAAGTGCAAC.................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
GTTGTCTCACCTGTTCGGGT.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TGAGCTCGA---------------------GGCTATGCCATAATA........................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................CTCTTGCTGGTCAAGATCTATGC..............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........CTGTTCGGGTGACAAGTGC....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................GAAAGATGAGCAGCAGCACCAC..............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................CGGAAAGATGAGCAGCAGCACCATC.............................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTAA--TATAG-ATGAGCTCGA---------------------GG.....................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................CGTTCTGGGTCTCTTGCTGGTC.........................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................CAAGATCTATGCCTAGTG-C-----------GA----CT...................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................AGCGTTCTGGGTCTCTTGCTGGTCA........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................G-ATGAGCTCGA---------------------GGCTATGCCAC............................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................ATCACCATAGTGGCCAGCGT............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................GGTCAAGATCTATGCCTAGTG-C-----------GA----C....................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................TATTAA--TATAG-ATGAGCTCGA---------------------GG.....................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................AG-ATGAGCTCGA---------------------GGCTATGCCATAAT.........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................CTTGCTGGTCAAGATCTATGCC.............................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................CATAGTGGCCAGCGTTCTGGGTCT...................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................GCCGGAAAGATGAGCAGCAGCACC................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GGTGTCTGACCTGTTCGGGTGACAAGTGCAACAAGAGTCCGGCCGGCAGGATGAGCAGCAGCACCATCACCATAGTGGCCAGCGTTCTGGGTCTCTTGCTGGTCAAGATCTATGCCTAGTG-CGA---------G-------ATTGG--TGTAG-ATGAACTCGG---------------------AGCTATGTCGTAATAAATTATTTC-CTTTTCGAATGTCTTA-----AG----------------------------AGTTTTGCT-TCTTATCGCCATT-GATTAGATTGA-CTTCTTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................G-ATGAACTCGG---------------------AGCTATGTC..............................................................................................................	20	1	10.00	10	0	0	0	2	8	0	0
.........................................................................AGTGGCCAGCGTTCTGGGT.....................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	1	3	1	0
.............................................................................................................CTATGCCTAGTG-CGA---------G-------ATTGG--T...........................................................................................................................................................	22	1	5.00	5	1	0	1	2	0	1	0
.........................................................................................................................................................G-ATGAACTCGG---------------------AGCTATGTCGT............................................................................................................	22	1	4.00	4	0	1	0	1	2	0	0
.........................................................................................................................................................G-ATGAACTCGG---------------------AGCTATGTCGTA...........................................................................................................	23	1	4.00	4	0	0	0	3	1	0	0
.........................................................................................................................................................G-ATGAACTCGG---------------------AGCTATGT...............................................................................................................	19	1	3.00	3	0	1	0	1	1	0	0
...........................GCAACAAGAGTCCGGCCGGCA.................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	1	2	0	0
........................................................................................................................................................AG-ATGAACTCGG---------------------AGCTATGTC..............................................................................................................	21	1	2.00	2	0	0	0	1	1	0	0
..........................................................................................................................CGA---------G-------ATTGG--TGTAG-ATGAACT...............................................................................................................................................	21	1	2.00	2	0	0	0	1	1	0	0
...........................................................................................................................................................ATGAACTCGG---------------------AGCTATGT...............................................................................................................	18	1	2.00	2	0	0	0	1	0	1	0
..............................................................................................................TATGCCTAGTG-CGA---------G-------ATTGG--TGTA........................................................................................................................................................	24	1	2.00	2	0	0	0	0	2	0	0
...............................................................................................................ATGCCTAGTG-CGA---------G-------ATTGG--TGTA........................................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0
......................................................................................CTGGGTCTCTTGCTGGTCAA.......................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2	0
...........................................................................................................................................................ATGAACTCGG---------------------AGCTATGTCGTA...........................................................................................................	22	1	2.00	2	1	0	0	1	0	0	0
.........................................................................................................................................................G-ATGAACTCGG---------------------AGCTATGTCGTAAT.........................................................................................................	25	1	2.00	2	0	0	0	1	1	0	0
.............................................................................................................CTATGCCTAGTG-CGA---------G-------ATTGG--TGTA........................................................................................................................................................	25	1	2.00	2	0	1	0	1	0	0	0
........................................................AGCAGCACCATCACCATAGTGGCC.................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
................................AAGAGTCCGGCCGGCAGGAT.............................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................GTAG-ATGAACTCGG---------------------AGCTATGTC..............................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................TG-CGA---------G-------ATTGG--TGTAG-AT....................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
..................GTGACAAGTGCAACAAGAGTC..........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
................................................................................................TGCTGGTCAAGATCTATGCC.............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................CAAGATCTATGCCTAGTG-C......................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................ATTGG--TGTAG-ATGAACTCGG---------------------AGC....................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
....................GACAAGTGCAACAAGAGTCCG........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.............................AACAAGAGTCCGGCCGGCAGGATG............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
............................................GGCAGGATGAGCAGCAGCACCATCA............................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................ATGCCTAGTG-CGA---------G-------ATTGG--TGTAG-AT....................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................CTAGTG-CGA---------G-------ATTGG--TGTAG-AT....................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.............................AACAAGAGTCCGGCCGGC..................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................CGG---------------------AGCTATGTCGTAATA........................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.............................................GCAGGATGAGCAGCAGCAC.................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................GGTCAAGATCTATGCCTAGTG-CGA---------...........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
........................................................................TAGTGGCCAGCGTTCTGGGT.....................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................ATGAACTCGG---------------------AGCTATGTCGTAATAA.......................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...................................................................CACCATAGTGGCCAGCGTTCTGGGT.....................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................AG-ATGAACTCGG---------------------AGCTATGTCGT............................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................ATTGG--TGTAG-ATGAACTCGG---------------------AGCTATGTC..............................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................CGA---------G-------ATTGG--TGTAG-ATGAACTCGG---------------------AGC....................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................GGTCAAGATCTATGCCTAGTG-CGA---------G-------...................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................G-CGA---------G-------ATTGG--TGTAG-ATGAACTCGG---------------------A......................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................G-ATGAACTCGG---------------------AGCTATGTCGTAATA........................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................TGG--TGTAG-ATGAACTCGG---------------------AGCTA..................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..............TCGGGTGACAAGTGCAACAAGAGTCCGG.......................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..................GTGACAAGTGCAACAAGAGTCCGG.......................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..................GTGACAAGTGCAACAAGAGTCC.........................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................GACAAGTGCAACAAGAGTCCGGC......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.............................AACAAGAGTCCGGCCGGCA.................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
....................GACAAGTGCAACAAGAGTCCGG.......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................CTATGCCTAGTG-CGA---------G-------ATTGG--TG..........................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................GTAG-ATGAACTCGG---------------------AGCT...................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................CTATGCCTAGTG-CGA---------G-------ATTGG--TGT.........................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
...........................GCAACAAGAGTCCGGCCGGCAGGAT.............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..................GTGACAAGTGCAACAAGAGTCCGGCC.....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...........................GCAACAAGAGTCCGGCCGGCAGGATG............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................TATCGCCATT-GATTAGATTGA-CTTCTT.	27	1	1.00	1	0	1	0	0	0	0	0
..................GTGACAAGTGCAACAAGA.............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.GTGTCTGACCTGTTCGGGT.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................G--TGTAG-ATGAACTCGG---------------------AGCTATGTC..............................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................GGTCAAGATCTATGCCTAGT.........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................ATGAACTCGG---------------------AGCTATGTC..............................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
....................................................................ACCATAGTGGCCAGCGTTCTGGGTCT...................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................G-CGA---------G-------ATTGG--TGTAG-ATGAACT...............................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................AG-ATGAACTCGG---------------------AGCTATGTCGTA...........................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.......................AAGTGCAACAAGAGTCCGGCC.....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................CTAGTG-CGA---------G-------ATTGG--TGTAG-......................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................CGG---------------------AGCTATGTCGTAATAAA......................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................TAGTG-CGA---------G-------ATTGG--TGTAG-......................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................GAACTCGG---------------------AGCTATGTCGTAATAAATT....................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
..................................................................................CGTTCTGGGTCTCTTGCT.............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
..........................................CCGGCAGGATGAGCAGCAGCAC.................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................TGAACTCGG---------------------AGCTATGTCG.............................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................G-ATGAACTCGG---------------------AGCTATGTCG.............................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................CTATGCCTAGTG-CGA---------G-------ATTGG--TGTAG-......................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...........................GCAACAAGAGTCCGGCCGGC..................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
....................................................................................TTCTGGGTCTCTTGCTGGTC.........................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................G-------ATTGG--TGTAG-ATGAACTCGG---------------------A......................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.......GACCTGTTCGGGTGACAAGT......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
......................................................................................CTGGGTCTCTTGCTGGTCA........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.................GGTGACAAGTGCAACAAGAGTCCGGCC.....................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
....................................................................ACCATAGTGGCCAGCGTTCTGGG......................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................G-ATGAACTCGG---------------------AGCTATGTCGTAATAAA......................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..........CTGTTCGGGTGACAAGTGC....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................ATGAACTCGG---------------------AGCTATGTCGTAATAAAT.....................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................GA---------G-------ATTGG--TGTAG-ATGAACTC..............................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
....................GACAAGTGCAACAAGAGTCCGGCC.....................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................GGTCAAGATCTATGCCTAGTG-C......................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.....................................TCCGGCCGGCAGGATGAGCAGC......................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................CCATAGTGGCCAGCGTTCTGGGT.....................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................GAACTCGG---------------------AGCTATGTCGTAATAAAT.....................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................CGA---------G-------ATTGG--TGTAG-ATGAACTC..............................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................CTAGTG-CGA---------G-------ATTGG--TGT.........................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
........ACCTGTTCGGGTGACAAGTGCAACAAG..............................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..........CTGTTCGGGTGACAAGTGCAACAAGA.............................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................GTAG-ATGAACTCGG---------------------AGCTATGT...............................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................ATGAACTCGG---------------------AGCTATGTCGTAAT.........................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................GAACTCGG---------------------AGCTATGTCGTA...........................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.............................................GCAGGATGAGCAGCAGCACCAT..............................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................CAGCGTTCTGGGTCTCTTGCT.............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
............................................GGCAGGATGAGCAGCAGCACC................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................G-------ATTGG--TGTAG-ATGAACTCGG---------------------AG.....................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........TGTTCGGGTGACAAGTGCAACAAG..............................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................GTCAAGATCTATGCCTAGTG-CGA---------G-------...................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................G-ATGAACTCGG---------------------AGCTATGTCGTAATAAAT.....................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
....................................GTCCGGCCGGCAGGATGAGCAGC......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
.......GACCTGTTCGGGTGACAAGTGCAACA................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
...........................GCAACAAGAGTCCGGCCG....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
......................................................GCAGCAGCACCATCACCAT........................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0	0

dp5

ACTGCCGCACCTGCTCGGGGGATAAGTGCAACAAGAGTCCGGCGGGAAAAGTGAGCAGCAGCATCTACACAATTCTAGCCGGCGTTGTGGGCCTGCTGTTGGTCAAAACTTATGCCTAGA--------------------CTATTTT--TAAAG-ATGAACTAAAAAGAG---AGTATAG----AGAACAAATTTTTAATAAATTATTTT-----TGGTATAAGCGAC-------AGCTCATTTTGCTCCTTATCTCTGT-T-------------------CAAT-GATTAGATTGC-CTTCTTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................GGCGTTGTGGGCCTGCTGTT.............................................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................CAAAACTTATGCCTAGA--------------------CTATT................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................GCAACAAGAGTCCGGCGG....................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................GCAACAAGAGTCCGGCGGGA..................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0	0	0	0	0
.............................AACAAGAGTCCGGCGGGAAAAGTGAGC.........................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	0	0	0	0	1	0	0	0
................................................................................GGCGTTGTGGGCCTGCTGTTG............................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0	0	0	0	0
..................................................................................................................................................T--TAAAG-ATGAACTAAAAAGAG---T...................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0
.........................GTGCAACAAGAGTCCGGCGGGA..................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................GTTGTGGGCCTGCTGTTG............................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................ATAAGTGCAACAAGAGTCCGGC......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...................................AGTCCGGCGGGAAAAGTGAGCAGCAGC...................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................AGCCGGCGTTGTGGGCCTGCTGTTGGTC.........................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................ATTCTAGCCGGCGTTGTGGG......................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................AGTGAGCAGCAGCATCTACACAATTC......................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........TGCTCGGGGGATAAGTGCA...................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GCAACAAGAGTCCGGCGGGAAA................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................AGTGCAACAAGAGTCCGGCGGGAAA................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................GGTCAAAACTTATGCCTAGA--------------------C....................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................CCGGCGGGAAAAGTGAGCAGC......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.CTGCCGCACCTGCTCGGGGG............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................AACAAGAGTCCGGCGGGAAA................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................TGCTGTTGGTCAAAACTTATGCC.............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................AACTTATGCCTAGA--------------------CTATTTT--T...........................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................TAAGTGCAACAAGAGTCCGGC......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................GTCAAAACTTATGCCTAGA--------------------.....................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................CCTGCTGTTGGTCAAAACTTATGC..............................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................ATAAGTGCAACAAGAGTCCGGCGG....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TATTTT-----TGGTATAAGCGAC-------AAA...................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................GTTGTGGGCCTGCTGTTGGTC.........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................AAGTGCAACAAGAGTCCGGCGGGAAAA...............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................GATAAGTGCAACAAGAGTCCGGCGGG...................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................GGTCAAAACTTATGCCTAGA--------------------.....................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................T--TAAAG-ATGAACTAAAAAGAG---AGT.................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................GCAACAAGAGTCCGGCGGGAA.................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................AACAAGAGTCCGGCGGGA..................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GCAACAAGAGTCCGGCGGG...................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................ATTTT--TAAAG-ATGAACTAAAAAGAG---AGT.................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TT--TAAAG-ATGAACTAAAAAGAG---....................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................T--TAAAG-ATGAACTAAAAAGAG---C...................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................GTTGGTCAAAACTTATGCCTAGA--------------------CT...................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................ATTTT--TAAAG-ATGAACTAAAAAGAG---A...................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................AGCCGGCGTTGTGGGCCTGC.................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................CAAGAGTCCGGCGGGAAAAG..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........ACCTGCTCGGGGGATAAGT......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................AAAAGTGAGCAGCAGCATC................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................TAAGTGCAACAAGAGTCCGGCGG....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................TTCTAGCCGGCGTTGTGGGCCT...................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................CAACAAGAGTCCGGCGGG...................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................CAAAACTTATGCCTAGA--------------------CT...................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................TTCTAGCCGGCGTTGTGGGCCTGCT................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................TAAAG-ATGAACTAAAAAGAG---T...................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................GTCCGGCGGGAAAAGTGAGCAGCAG....................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................ATTCTAGCCGGCGTTGTGGGCCTGCT................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................AGTCCGGCGGGAAAAGTGAGC.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................CAAAACTTATGCCTAGA--------------------CTATTT...............................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................GGCGTTGTGGGCCTGCTGTTGGTC.........................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................CTATTTT--TAAAG-ATGAACTAAA............................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................AG-ATGAACTAAAAAGAG---A...................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................ATAAGTGCAACAAGAGTCCGGCGGGA..................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
............................CAACAAGAGTCCGGCGGGA..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................AACTAAAAAGAG---AGTATAG----AGA......................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................AAGAGTCCGGCGGGAAAAGT.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

ACTGCCGCACCTGCTCGGGGGATAAGTGCAACAAGAGTCCGGCGGGAAAAGTGAGCAGCAGCATCTACACAATTCTAGCCGGCGTTGTGGGCCTGCTGTTGGTCAAAACTTATGCCTAGA--------------------CTATTTT--TAAAG-ATGAACTAAAAAGAG---TGTATAG----AGAACAAATTGTTAATAAATTATTTT-----TGGTATAAGCGAC-------AGCTCATTTTGCTCCTTATCTCTGT-T-------------------CAAT-GATTAGATTGC-CTTTTTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................CTAGCCGGCGTTGTGGGC.....................................................................................................................................................................................................................	18	1	3.00	3	2	1	0	0	0	0
..............................................................ATCTACACAATTCTAGCCGGC..............................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
.................................................................................................GTTGGTCAAAACTTATGCCTAGA--------------------CT...................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................GTATAG----AGAACAAATTGTT............................................................................................................	19	1	3.00	3	2	1	0	0	0	0
................................AAGAGTCCGGCGGGAAAAGTGAGC.........................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................CAAATTGTTAATAAATTATTTT-----TGGT......................................................................................	26	1	2.00	2	2	0	0	0	0	0
.CTGCCGCACCTGCTCGGGGG............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................TTATTTT-----TGGTATAAGCGAC-------......................................................................	20	1	1.00	1	1	0	0	0	0	0
....................GATAAGTGCAACAAGAGTCCGGC......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................AATTATTTT-----TGGTATAAGCGAC-------......................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................CCGGCGTTGTGGGCCTGCT................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................ATTATTTT-----TGGTATAAGCGAC-------......................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................CAAAACTTATGCCTAGA--------------------CTATT................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................AGAGTCCGGCGGGAAAAGTGAGC.........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................AAGAG---TGTATAG----AGAACAAATTGTT............................................................................................................	25	1	1.00	1	0	0	1	0	0	0
...............................................AAAGTGAGCAGCAGCATCTA..............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
........ACCTGCTCGGGGGATAAGTG.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................AATTATTTT-----TGGTATAAGCGAC-------AGC...................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................TATTTT-----TGGTATAAGCGAC-------A.....................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................AG-ATGAACTAAAAAGAG---TGTATAG----A........................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
................................................................................GGCGTTGTGGGCCTGCTGTTGGTC.........................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
............................................................................................CTGCTGTTGGTCAAAACTTATGCCT............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.........................GTGCAACAAGAGTCCGGC......................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.......................AAGTGCAACAAGAGTCCGGC......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................GTATAG----AGAACAAATTGTTAAT.........................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......GCACCTGCTCGGGGGATAAGTGC....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................G---TGTATAG----AGAACAAATTGTTA...........................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........................GCAACAAGAGTCCGGCGGG...................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................TAAAG-ATGAACTAAAAAGAG---TGT.................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.....................ATAAGTGCAACAAGAGTCCGGCGGG...................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................ATTTT-----TGGTATAAGCGAC-------......................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................................ATCTACACAATTCTAGCCGG...............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................TT--TAAAG-ATGAACTAAAAAGAG---T...................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................ATTTT-----TGGTATAAGCGAC-------AAA...................................................................	21	2	0.50	1	0	0	1	0	0	0

droWil2

GGTGCAGCGTGTGTTCCGGTAATAAGTGCAACAAAAATCCAGCCGGTAAAATGAGCAACAGTTTTTACACCATTCTGACTGCAACTGTGGGTCTTGTTTTAGCCAAAATGTATGCTTAATAACAC---------AAAGCATTTCCCTTTGAATACTTAGGTTAAAAAAATAAAAA----T----AAAATTATTTTTACACAAATTTAGTC-----------------------------------------TATCACAAA-T---------------------TC-GATAAGAAT--------TG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................AATCCAGCCGGTAAAATGAGC.........................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	6	0	0
....................................ATCCAGCCGGTAAAATGAGC.........................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	3	1	0
.......................................................................ATTCTGACTGCAACTGTGGGT.....................................................................................................................................................................................................................	21	1	3.00	3	0	0	1	2	0
.................................................AATGAGCAACAGTTTTTACACCATTC......................................................................................................................................................................................................................................	26	1	3.00	3	0	0	1	2	0
..TGCAGCGTGTGTTCCGGTA............................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	2	1	0
..........................................................................CTGACTGCAACTGTGGGT.....................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	3	0
GGTGCAGCGTGTGTTCCGGT.............................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	3	0	0
...GCAGCGTGTGTTCCGGTAATAAGTGC....................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	2	0
..................................................................................AACTGTGGGTCTTGTTTTAGCCAAAAT....................................................................................................................................................................................................	27	1	2.00	2	0	0	0	2	0
....................................ATCCAGCCGGTAAAATGAG..........................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	1	1	0
............GTTCCGGTAATAAGTGCAAC.................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
.........................................................................TCTGACTGCAACTGTGGGT.....................................................................................................................................................................................................................	19	1	2.00	2	0	0	1	1	0
................................AAAAATCCAGCCGGTAAAATGAG..........................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0
.........................................................................................................................................................ACTTAGGTTAAAAAAATAAAA...................................................................................................................................	21	1	2.00	2	0	0	0	2	0
................................................................TTACACCATTCTGACTGCAACTGTGGGT.....................................................................................................................................................................................................................	28	1	2.00	2	0	1	0	1	0
....................................ATCCAGCCGGTAAAATGAGCAACA.....................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0
...............................CAAAAATCCAGCCGGTAAAATGAGC.........................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0
....................AATAAGTGCAACAAAAATCCAGCCGGT..................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0
.GTGCAGCGTGTGTTCCGGTA............................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0
...........................................................................................................................................ATTTCCCTTTGAATACTTAGGTT...............................................................................................................................................	23	1	2.00	2	0	0	0	2	0
.................................................AATGAGCAACAGTTTTTACACCATTCT.....................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	2	0
.................................AAAATCCAGCCGGTAAAATGAG..........................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0
................................AAAAATCCAGCCGGTAAAATGAGC.........................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0
..TGCAGCGTGTGTTCCGGTAATAAGTG.....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
...................................................................................ACTGTGGGTCTTGTTTTAGC..........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................CAC---------AAAGCATTTCCCTTT............................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........TGTTCCGGTAATAAGTGCAA..................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
........................................................................................................................................AGCATTTCCCTTTGAATACTTAGGTT...............................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..................................................................ACACCATTCTGACTGCAACTGTGGGT.....................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.................................................AATGAGCAACAGTTTTTACACC..........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................ATAAGTGCAACAAAAATCCAGCCGGT..................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..................................................................ACACCATTCTGACTGCAACTG..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.....................................................................................TGTGGGTCTTGTTTTAGC..........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................CATTTCCCTTTGAATACTT....................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.......................................................................ATTCTGACTGCAACTGTGG.......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................................CCAGCCGGTAAAATGAGC.........................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
.....................ATAAGTGCAACAAAAATCCAGCCGGTAA................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.GTGCAGCGTGTGTTCCGGTAATAAGTGC....................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.GTGCAGCGTGTGTTCCGGT.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................................................TTCTGACTGCAACTGTGGG......................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
....................................................................................CTGTGGGTCTTGTTTTAGCCAAA......................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................CTTAGGTTAAAAAAATAAA....................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...................................................................CACCATTCTGACTGCAACTGT.........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............................AACAAAAATCCAGCCGGTAAAATG............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
......................................................................................GTGGGTCTTGTTTTAGCC.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............................................................GTTTTTACACCATTCTGACT.................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...........TGTTCCGGTAATAAGTGCA...................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...................................AATCCAGCCGGTAAAATGAG..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................AATAACAC---------AAAGCATTTCCCTTT............................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.............................................................................ACTGCAACTGTGGGTCTTGT................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.............................AACAAAAATCCAGCCGGTAAAATGAGC.........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.................................................AATGAGCAACAGTTTTTAC.............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..................................................ATGAGCAACAGTTTTTACAC...........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..................................................................................AACTGTGGGTCTTGTTTTAGC..........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...........................................................................................................................................ATTTCCCTTTGAATACTTAGGTTA..............................................................................................................................................	24	1	1.00	1	0	1	0	0	0
........GTGTGTTCCGGTAATAAGTGCAAC.................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..............................................................................CTGCAACTGTGGGTCTTGT................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.................................AAAATCCAGCCGGTAAAATGAGCAACA.....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
........GTGTGTTCCGGTAATAAGTGC....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.......................................................CAACAGTTTTTACACCATTCTGAC..................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
..................................AAATCCAGCCGGTAAAATGAGC.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..................................................................................AACTGTGGGTCTTGTTTTA............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
........GTGTGTTCCGGTAATAAGTGCAACAA...............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..................................................................................AACTGTGGGTCTTGTTTTAGCC.........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................AATAACAC---------AAAGCATTTCC................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.......................................................................ATTCTGACTGCAACTGTG........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................................ATTTCCCTTTGAATACTTA...................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..TGCAGCGTGTGTTCCGGTAATAAGTGCA...................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
...................................................................................................................................................TTGAATACTTAGGTTAAAAAAATAAA....................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...GCAGCGTGTGTTCCGGTAATAA........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.............................................................................ACTGCAACTGTGGGTCTTGTT...............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
....................................ATCCAGCCGGTAAAATGAGCAACAGT...................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
GGTGCAGCGTGTGTTCCGGTA............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
........................AGTGCAACAAAAATCCAGCCGGTA.................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.....................................TCCAGCCGGTAAAATGAGC.........................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
GGTGCAGCGTGTGTTCCGGTAATAAG.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..........GTGTTCCGGTAATAAGTGCAACA................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................................ATCCAGCCGGTAAAATGA...........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...................................................................CACCATTCTGACTGCAACTG..........................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...GCAGCGTGTGTTCCGGTA............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
....................................ATCCAGCCGGTAAAATGAGCAAC......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
......................................................................CATTCTGACTGCAACTGTGGG......................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................ATTCTGACTGCAACTGTGGGTCT...................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
......................................................................................GTGGGTCTTGTTTTAGCCAAAAT....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
............GTTCCGGTAATAAGTGCAA..................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
....................................................................................................................TAATAACAC---------AAAGCATTTCCCT..............................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..............................................TAAAATGAGCAACAGTTTTTACAC...........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..........................................................................................................................................CATTTCCCTTTGAATACTTAGGTT...............................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.....AGCGTGTGTTCCGGTAATAA........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
................................................AAATGAGCAACAGTTTTTACAC...........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.................................................................................................TTTAGCCAAAATGTATGC..............................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................................................AACTGTGGGTCTTGTTTTAGCCAA.......................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0

droVir3

GGTGCACCATCTGCTCTGGCAACAAGTGCAACAAGAATCCAGCTGGCAAGCTGAGCAGCAGTGTCTACACAATTGCGGCCACAGTGATATCTCTAATGCTGGCCAAGATCTATGCTTAAAA-TTG---------T-----GT-------------ATAAACTTAG--------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................GTGTCTACACAATTGCGGC..................................................................................................................................................................................................................................	19	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CATCTGCTCTGGCAACAAGT......................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GAGCAGCAGTGTCTACACA..........................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................AGTGTCTACACAATTGCGGC..................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ACCATCTGCTCTGGCAACAAGTGCA...................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................AGTGTCTACACAATTGCGGCC.................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GCACCATCTGCTCTGGCAACAAGT......................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGCGGCCACAGTGATATCTC....................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................ATCTCTAATGCTGGCCAAGAT....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GAGCAGCAGTGTCTACACAATTGC.....................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CTGAGCAGCAGTGTCTAC.............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................ATATCTCTAATGCTGGCCAAGATC...................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................CTACACAATTGCGGCCACAGTGATATCT.....................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................CTACACAATTGCGGCCACAGT............................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ACCATCTGCTCTGGCAACAAGTGCAAC.................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CTGGCAAGCTGAGCAGCAGTGTC................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CACAGTGATATCTCTAATGCTGGCCA........................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TCTACACAATTGCGGCCACAGTGATATCT.....................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CTCTGGCAACAAGTGCAACAAGAATCC.........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GCTGGCAAGCTGAGCAGCA.....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGGCAAGCTGAGCAGCAGT...................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................ATCTCTAATGCTGGCCAAG......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GTGTCTACACAATTGCGGCCACA..............................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAATCCAGCTGGCAAGCTGAGCAGC......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CTCTGGCAACAAGTGCAACAAG..............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGCTCTGGCAACAAGTGCA...................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GTGCACCATCTGCTCTGGCAACAAGT......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CACAGTGATATCTCTAATGCT.............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................CAAGAATCCAGCTGGCAAGCTGAGCA........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GCTGAGCAGCAGTGTCTAC.............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GGCAACAAGTGCAACAAGAATCCA........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................GTCTACACAATTGCGGCCACAGTGAT.........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CTCTAATGCTGGCCAAGAT....................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAACAAGAATCCAGCTGGCAA................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................ATCTCTAATGCTGGCCAAGATCT..................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................ATCCAGCTGGCAAGCTGAGCAGCAGTGT.................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................GATCTATGCTTAAAA-TTG---------T-----GT-------------ATAA..................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GTGATATCTCTAATGCTGGCCAA.......................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CACAGTGATATCTCTAATGCTGGCC.........................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CCACAGTGATATCTCTAATGCTGGA..........................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................TGTCTACACAATTGCGGCCACA..............................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GCTGGCAAGCTGAGCAGCAGT...................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................GCAAGCTGAGCAGCAGTGTCTACAC...........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ACAAGTGCAACAAGAATCCAGCT.....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CTGAGCAGCAGTGTCTACAC...........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................GCAGTGTCTACACAATTGCGGC..................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGGCAAGCTGAGCAGCAGTGTCTAC.............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CAAGCTGAGCAGCAGTGTCTACA............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GGTGCACCATCTGCTCTGGC.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GCACCATCTGCTCTGGCAACAAGTGC....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CTGCTCTGGCAACAAGTG.....................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CAAGATCTATGCTTAAAA-TTG---------T-----GT-------------......................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................GATATCTCTAATGCTGGCCAAGAT....................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................GAGCAGCAGTGTCTACACAATTGCGGC..................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TATCTCTAATGCTGGCCAAG......................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGCTCTGGCAACAAGTGCAAC.................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAACAAGAATCCAGCTGGCAAGCTGAGC.........................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ATCTGCTCTGGCAACAAGT......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TTGCGGCCACAGTGATATCTC....................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CACCATCTGCTCTGGCAACAAGTGCAA..................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................ATCCAGCTGGCAAGCTGAGCAGCAGT...................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................ATCTCTAATGCTGGCCAAGATCTAT................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TAATGCTGGCCAAGATCTATGCTT............................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CACCATCTGCTCTGGCAACAAGT......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................GTCTACACAATTGCGGCCACAGT............................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAACAAGAATCCAGCTGGC..................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATTGTAATGTCTGCTCCGGAAACAAGTGCAACAAGAGTCCAGCTGGCACACTGAGTCGCAGCCACTACACTATCGTGGCCGCTGTCTTGGCCCTGGTGCTGGCCAAGATCTATGCCTAGAA-TATATTCTAAGAAA----CTGTCAA--CATTT-ATTTGTCAATATTGCCTAAC-------------------------------------------------CAAC-------CGTTCA-GCTCTGGCTTATCACATTAT---------------------GC-GATAAGATT----------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................AAC-------CGTTCA-GCTCTGGCTT.....................................................	19	1	3.00	3	3	0	0	0	0	0
............................................................................GGCCGCTGTCTTGGCCCTGGT................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
.................................................................................................GCTGGCCAAGATCTATGCCTAGA.........................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
..........................................CTGGCACACTGAGTCGCAGC...................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1
................................................................................................................................................................................................................................CAAC-------CGTTCA-GCTCTGGCTT.....................................................	20	1	2.00	2	2	0	0	0	0	0
........................................................................................................................A-TATATTCTAAGAAA----CTGTCAA--C...........................................................................................................................................................	23	1	2.00	2	1	0	0	1	0	0
............................CAACAAGAGTCCAGCTGGCA.................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................GCCTAAC-------------------------------------------------CAAC-------CGTTCA-GCTCTGGCTT.....................................................	27	1	2.00	2	2	0	0	0	0	0
.....................................................................................................GCCAAGATCTATGCCTAGAA-T......................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................ACACTGAGTCGCAGCCACTACACTATCGT.....................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................TGGCTTATCACATTAT---------------------GC-GAT................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................TGTCAATATTGCCTAAC-------------------------------------------------CAAC-------C.....................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................GTCCAGCTGGCACACTGAGTCGCAGCCA.................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................A----CTGTCAA--CATTT-ATTTGTC...............................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................CTACACTATCGTGGCCGCT..............................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................TTGCCTAAC-------------------------------------------------CAAC-------CGTTCA-GC.............................................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................CCTAAC-------------------------------------------------CAAC-------CGTTCA-GCTCT..........................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................GTGCTGGCCAAGATCTATGCCTAGA.........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................AAC-------------------------------------------------CAAC-------CGTTCA-GCTCTGGCTT.....................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................GATCTATGCCTAGAA-TATATTCTAAGA...........................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................GAA-TATATTCTAAGAAA----CTGTC................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................GCCCTGGTGCTGGCCAAGATCTATG...............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................TATATTCTAAGAAA----CTGTCA...............................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
ATTGTAATGTCTGCTCCGGAAACA.........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................CTGGCCAAGATCTATGCCTAGA.........................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................A-TATATTCTAAGAAA----CTGT.................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................GCAACAAGAGTCCAGCTGGCA.................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................ATCTATGCCTAGAA-TATATT.................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................AA-TATATTCTAAGAAA----CTGTC................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................ATTCTAAGAAA----CTGTCAA--CAT.........................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................CTAGAA-TATATTCTAAGAAA----CTGTCAA--C...........................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
........................................................................................................................A-TATATTCTAAGAAA----CTGTCAA--CATTT-......................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................ATATTGCCTAAC-------------------------------------------------CAAC-------CGTTCA-GCTCTG.........................................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................CAAC-------CGTTCA-GCTCTGGCTTATCA.................................................	24	1	1.00	1	0	0	0	0	0	1
...............................................................................CGCTGTCTTGGCCCTGGTG...............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....................................................................ACTATCGTGGCCGCTGTCTTG........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................AACAAGTGCAACAAGAGTCCAGC......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
............................................................................GGCCGCTGTCTTGGCCCTGGTG...............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................CGTTCA-GCTCTGGCTTATC..................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................TATATTCTAAGAAA----CTGTC................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................CACATTAT---------------------GC-GATAAGATT----------	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................CA-GCTCTGGCTTATCACATTAT---------------------GC-GATA...............	28	1	1.00	1	1	0	0	0	0	0
...........................................................................................CCTGGTGCTGGCCAAGATCTATGCCTA...........................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................GAA-TATATTCTAAGAAA----CTGTCAA--C...........................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................GGCCCTGGTGCTGGCCAAGATCTATGCCT............................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...........................GCAACAAGAGTCCAGCTGGCAC................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................ACTACACTATCGTGGCCGCTGTCTTGG.......................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................GCTGGCCAAGATCTATGCCTAG..........................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........GTCTGCTCCGGAAACAAGTGC....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................TATCACATTAT---------------------GC-GATAAG.............	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................GGCTTATCACATTAT---------------------GC-GA.................	19	1	1.00	1	1	0	0	0	0	0

droGri2

AGTGCAACACCTGCTCTGGTAACAACTGTAACAAGAGTCCAGCTGGCAAGATGAGCAGCAGCGTCTTCACAATTGCAGCAACCGCATTGGCCGTCATGCTGTCCAAAATCTATGCCTGAAT-GA-----------------------------------ATCA----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................GTCCAAAATCTATGCCTGAAT-.......................................................................................................................................................................................	21	1	1.00	1	1	0
..........................................................................................................AATCTATGCCTGAAT-GA-----------------------------------ATC...............................................................................................................................................	20	1	1.00	1	1	0
.....................................................................................ATTGGCCGTCATGCTGTCC.........................................................................................................................................................................................................	19	1	1.00	1	1	0
.....................................TCCAGCTGGCAAGATGAGCAG.......................................................................................................................................................................................................................................................	21	1	1.00	1	1	0

dan_877

scaffold_12943:346732-346859 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-15.2	-14.9	-14.5