ID:

dan_866

 Coordinate:

scaffold_12943:49532-49682 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-49.5 -48.7 -48.6

Flybase annnotation

exon [dana_GLEANR_641:6]; CDS [Dana\GF22441-cds]; intron [Dana\GF22441-in]; intron [Dana\GF22441-in]

No Repeatable elements found

mature
star
  1. scaffold_12902:292107-292133 -
  2. scaffold_12902:299509-299535 -
  3. scaffold_12911:371052-371078 +
  4. scaffold_12911:377499-377525 +
  5. dan_866  scaffold_12943:49652-49678 -
  6. scaffold_13034:683040-683066 +
  7. scaffold_13034:698474-698500 +
  8. scaffold_13047:209617-209643 +
  9. scaffold_13082:102443-102469 -
  10. scaffold_13082:106319-106345 -
  11. scaffold_13117:2353583-2353609 +
  12. scaffold_13221:173779-173805 +
  13. scaffold_13230:742642-742668 -
  14. scaffold_13230:890391-890417 -
  15. scaffold_13230:897305-897331 +
  16. scaffold_13250:3465925-3465951 -
  17. scaffold_13340:9989361-9989387 +
  18. scaffold_13340:9993155-9993181 +
  19. scaffold_13417:6543388-6543414 +
  20. scaffold_13417:6662904-6662930 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------########################--------------------------
GGGGATCTCCGAAGGATCCTAATATACTCTGGTCTGAGGAGCTCAGGTTTGACCCACGCTGTTCGTGGGGTCGCGCACGCATCATCATGCGTGCGGGTGTTCCAGAACCCACCCACTAGCCGGCGAGATCTGGCCGGACACAGCGTGCAACTCCCTCCTCTCGTCCGATATATCCTGAGATGCCACCTCACTGTTCGTTACATTGTTGAAGTTCATCCAGCAAAGGTAATTCATTGACGAGTGGTTCAGAT
******************************************************((((((((..(((((.....((((((((....))))))))((((........)))).)))))...(((((........)))))..))))))))..................(((.(((...((((.......)))).))))))...*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V055
head
 V106
head
 V105
male body
........................TACTCTGGTCTGAGGAGCTCAGG............................................................................................................................................................................................................ 23 0 20 2.90 58 56 0 2 0 0 0
........................TACTCTGGTCTGAGGAGCTCAG............................................................................................................................................................................................................. 22 0 20 1.50 30 30 0 0 0 0 0
.............................................................................................................................................................................CCTGAGATGCCACCTCACTGTTCGTTA................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................CCTGAGATGCCACCTCACTGTTCGT..................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................ATATCCTGTGATGCAACC................................................................ 18 2 2 0.50 1 0 0 0 1 0 0
.........................ACTCTGGTCTGAGGAGCTCAGG............................................................................................................................................................................................................ 22 0 20 0.40 8 8 0 0 0 0 0
........................TACTCTGGTCTGAGGAGCTCAGGT........................................................................................................................................................................................................... 24 0 20 0.40 8 5 1 2 0 0 0
......................................................CACGCTGTTCGTGGGGTCGCGCACGCA.......................................................................................................................................................................... 27 0 20 0.35 7 7 0 0 0 0 0
...........................................................................................................................................ACAGCGTGCAACTCCCTCCTCT.......................................................................................... 22 0 18 0.33 6 4 2 0 0 0 0
.................................................................................................TGTTCCAGAACCCACCCACTAGCCGG................................................................................................................................ 26 0 20 0.30 6 3 3 0 0 0 0
.................................................................................................TGTTCCAGAACCCACCCACTAGCCGGC............................................................................................................................... 27 0 20 0.30 6 6 0 0 0 0 0
................................................................................................................................TCTGGCCGGACACAGCGTGCAACTCCC................................................................................................ 27 0 20 0.30 6 6 0 0 0 0 0
...........................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCGT....................................................................................... 25 0 18 0.28 5 4 1 0 0 0 0
...........................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCG........................................................................................ 24 0 18 0.28 5 5 0 0 0 0 0
...........................................................................................................................................ACAGCGTGCAACTCCCTCCTCTC......................................................................................... 23 0 18 0.28 5 3 2 0 0 0 0
.....................................................................................................CCAGAACCCACCCACTAGCCGGC............................................................................................................................... 23 0 20 0.25 5 2 3 0 0 0 0
................................................................................................................................TCTGGCCGGACACAGCGTGCAACTCC................................................................................................. 26 0 20 0.25 5 5 0 0 0 0 0
...........................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCGTC...................................................................................... 26 0 18 0.22 4 4 0 0 0 0 0
................................................................................................................................TCTGGCCGGACACAGCGTGCAACTC.................................................................................................. 25 0 20 0.20 4 3 1 0 0 0 0
............................................................................................................CCACCCACTAGCCGGCGAGATCTG....................................................................................................................... 24 0 20 0.20 4 4 0 0 0 0 0
............................................................................................................................................CAGCGTGCAACTCCCTCCTCTCG........................................................................................ 23 0 18 0.17 3 3 0 0 0 0 0
.............................................................................................................CACCCACTAGCCGGCGAGATCTG....................................................................................................................... 23 0 20 0.15 3 2 1 0 0 0 0
..............................................................................................................ACCCACTAGCCGGCGAGATCTGG...................................................................................................................... 23 0 20 0.15 3 0 3 0 0 0 0
......................................................CACGCTGTTCGTGGGGTCGCGCACG............................................................................................................................................................................ 25 0 20 0.15 3 1 1 1 0 0 0
.........................ACTCTGGTCTGAGGAGCTCAG............................................................................................................................................................................................................. 21 0 20 0.15 3 3 0 0 0 0 0
.......................................................ACGCTGTTCGTGGGGTCGCGCACGCA.......................................................................................................................................................................... 26 0 20 0.15 3 3 0 0 0 0 0
.................................................................................................TGTTCCAGAACCCACCCACTAGC................................................................................................................................... 23 0 20 0.15 3 3 0 0 0 0 0
......................................................CACGCTGTTCGTGGGGTCGCGCAC............................................................................................................................................................................. 24 0 20 0.15 3 0 3 0 0 0 0
...........................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCGTCCGA................................................................................... 29 0 18 0.11 2 2 0 0 0 0 0
............................................................................................................................................CAGCGTGCAACTCCCTCCTCTCGT....................................................................................... 24 0 18 0.11 2 2 0 0 0 0 0
...........................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCGTCC..................................................................................... 27 0 18 0.11 2 2 0 0 0 0 0
...............................................................................................................................................CGTGCAACTCCCTCCTCTCGTC...................................................................................... 22 0 19 0.11 2 1 1 0 0 0 0
......................................................CACGCTGTTCGTGGGGTCGCGCACGC........................................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
........................TACTCTGGTCTGAGGAGCTCAGGTT.......................................................................................................................................................................................................... 25 0 20 0.10 2 1 0 1 0 0 0
............................................................................................................................GAGATCTGGCCGGACACAGCGTGCAAC.................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0
.................................................................................................TGTTCCAGAACCCACCCACTAGCC.................................................................................................................................. 24 0 20 0.10 2 1 1 0 0 0 0
........................TACTCTGGGCTGAGGAGCTCAGGT........................................................................................................................................................................................................... 24 1 20 0.10 2 2 0 0 0 0 0
.................................................................................................TGTTCCAGAACCCACCCACTAGCCG................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0
................................................................................................GTGTTCCAGAACCCACCCACTAG.................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................................TCTGGCCGGACACAGCGTGCAACT................................................................................................... 24 0 20 0.10 2 1 1 0 0 0 0
........................TACTCTGGCCTGAGGAGCTCAGG............................................................................................................................................................................................................ 23 1 20 0.10 2 2 0 0 0 0 0
...........................................................................................................................................ACAGCGTGCAACTCCCTCCTCC.......................................................................................... 22 1 18 0.06 1 0 1 0 0 0 0
.............................................................................................................................................AGCGTGCAACTCCCTCCTCTCGTC...................................................................................... 24 0 18 0.06 1 1 0 0 0 0 0
.........................................................................................................................................ACACAGCGTGCAACTCCCTCCTCT.......................................................................................... 24 0 18 0.06 1 1 0 0 0 0 0
.........................................................................................................................................ACACAGCGTGCAACTCCCTCC............................................................................................. 21 0 18 0.06 1 0 0 1 0 0 0
......................................................................................................................................CGGACACAGCGTGCAACTCCCTC.............................................................................................. 23 0 18 0.06 1 1 0 0 0 0 0
...................................................................................................................................GGCCGGACACAGCGTGCAACTCCCT............................................................................................... 25 0 18 0.06 1 1 0 0 0 0 0
...........................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCTTC...................................................................................... 26 1 18 0.06 1 0 1 0 0 0 0
........................................................................................................................................GACACAGCGTGCAACTCCCTCCTCTC......................................................................................... 26 0 18 0.06 1 0 1 0 0 0 0
...........................................................................................................................................CCAGCGTGCAACTCCCTCCTCTCG........................................................................................ 24 1 18 0.06 1 0 1 0 0 0 0
............................................................................................................................................CAGCGTGCGACTCCCTCCTCTCGTCC..................................................................................... 26 1 18 0.06 1 1 0 0 0 0 0
...........................................................................................................................................ACAGCGCGCAACTCCCTCCTC........................................................................................... 21 1 18 0.06 1 1 0 0 0 0 0
............................................................................................................................................CAGCGTGCAACTCCCTCC............................................................................................. 18 0 18 0.06 1 0 0 1 0 0 0
...........................................................................................................................................ACAGCGTGCAACTCCCTCCTC........................................................................................... 21 0 18 0.06 1 1 0 0 0 0 0
.........................................................................................................................................ACACAGCGTGCAACTCCCTCCT............................................................................................ 22 0 18 0.06 1 1 0 0 0 0 0
........................................................................................................................................GACACAGCGTGCAACTCCCTCCTCT.......................................................................................... 25 0 18 0.06 1 1 0 0 0 0 0
.........................................................................................................................................ACACAGCGTGCAACTCCCTCCTCTCG........................................................................................ 26 0 18 0.06 1 1 0 0 0 0 0
.....................................................................................................................................CCGGACACAGCGTGCAACTCCCTCCTC........................................................................................... 27 0 18 0.06 1 1 0 0 0 0 0
..................................................................................................................................TGGCCGGACACAGCGTGCAACTCCCTC.............................................................................................. 27 0 18 0.06 1 1 0 0 0 0 0
...........................................................................................................................................GCAGCGTGCAACTCCCTCCTCC.......................................................................................... 22 2 18 0.06 1 0 1 0 0 0 0
........................................................................................................................................GACACAGCGTGCAAATCCCTCCTC........................................................................................... 24 1 18 0.06 1 1 0 0 0 0 0
..........................................................................................................................................CACAGCGTCCAAGTCCCTCCTCT.......................................................................................... 23 2 18 0.06 1 1 0 0 0 0 0
........................................................................................................................................GACACAGCGTGCAACTCCCTCCT............................................................................................ 23 0 18 0.06 1 1 0 0 0 0 0
....................AATATACTCTGGTCTGAGGAG.................................................................................................................................................................................................................. 21 0 19 0.05 1 1 0 0 0 0 0
...........................................................................................................................................ACAGCGTGGAACTCCCTCCTCTCGTCC..................................................................................... 27 1 19 0.05 1 1 0 0 0 0 0
................................................................................................................................................GTGCAACTCCCTCCTCTCGTCCG.................................................................................... 23 0 19 0.05 1 1 0 0 0 0 0
..............GATCCTAATATACTCTGGTCTGAGGAGC................................................................................................................................................................................................................. 28 0 19 0.05 1 1 0 0 0 0 0
.................................................................................................................................................TGCAACTCCCTCCTCTCGTCC..................................................................................... 21 0 19 0.05 1 1 0 0 0 0 0
.....................ATATACTCTGGTCTGAGGAGCTCAG............................................................................................................................................................................................................. 25 0 19 0.05 1 1 0 0 0 0 0
...............................................................................................................................................CGTGCAACTCCCTCCTCTCGTCCG.................................................................................... 24 0 19 0.05 1 1 0 0 0 0 0
..............................................................................................................................................GCGTGCAACTCCCTCCTCTCG........................................................................................ 21 0 19 0.05 1 0 0 0 0 1 0
................TCCTAATATACTCTGGTCTGAGGAGC................................................................................................................................................................................................................. 26 0 19 0.05 1 1 0 0 0 0 0
................TCCTAATATACTCTGGTCTGAGG.................................................................................................................................................................................................................... 23 0 19 0.05 1 1 0 0 0 0 0
.....................ATATACTCTGGTCTGAGGAGCTCAGG............................................................................................................................................................................................................ 26 0 19 0.05 1 1 0 0 0 0 0
..............................................................................................................................................GCGTGCAACTCCCTCCTCTCGTCCGATA................................................................................. 28 0 19 0.05 1 1 0 0 0 0 0
................................................................................................................................................GTGCAACTCCCTCCTCTCGTCCGA................................................................................... 24 0 19 0.05 1 1 0 0 0 0 0
...........................TCTGGTCTGAGGAGCTCAGGTTTGACC..................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................ATGCCACCTCACTGTTCGTTAC.................................................. 22 0 20 0.05 1 1 0 0 0 0 0
........................TACTCTGGTCTGAGGAGCTCAGT............................................................................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0
........................TACTCTGGTCTGAGGAGCTCAGGTTTGA....................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................CAGAACCCACCCACTAGCCGGCGAGATC......................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0
............................................................................................................CCACCCACTAGCCGGCGAGAGCTG....................................................................................................................... 24 1 20 0.05 1 0 0 0 0 0 1
....................................................................................................................................GCCGGACACAGCGTGCAACTCCC................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0
......................TGTACTCTGGTCTGAGGAGCTCAGGT........................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
............................................................................................................CCACCCACTAGCCGGCGAGATC......................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
........................TACTCTGGGCTGAGGAGCTCAGG............................................................................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................TTCCAGAACCCACCCACTAGCCGGCGAGA........................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................CCCACCCACTAGCCGGCGAGATCTGGCC.................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
...........................TCTGGTCTGAGGAGCTCAGG............................................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................ATCCCAGAACCCACCCACTAGCCGGC............................................................................................................................... 26 2 20 0.05 1 0 1 0 0 0 0
......................................................CAAGCTGTTCGTGGGGTCGCGC............................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0
.............................TGGTCTGAGGAGCTCAGGTTTGACC..................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................TTCCAGAACCCACCCACTAGC................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................AGATCTGGCCGGACACAGCGT......................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
........................TACTCTGGTCTGAGGAGCTCAGTGT.......................................................................................................................................................................................................... 25 2 20 0.05 1 1 0 0 0 0 0
..............................................................................................................ACCCACTAGCCGGCGAGATCTGGCC.................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
................................................................................................GTGTTCCACAACCCACCCACTAGC................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................CCAGAACCCACCCACTAGCCGGCGAG............................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................GGCGAGATCTGGCTGGACACAGCGT......................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
......................................GAGCTCAGGTTTGACCCACGCT............................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................GAGATCTGGCCGGACACAGCGTGCAA..................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................GATCTGGCCGGACACAGCGTGCAACTC.................................................................................................. 27 0 20 0.05 1 0 0 0 0 1 0
........................TACTCTGGACTGAGGAGCTCATG............................................................................................................................................................................................................ 23 2 20 0.05 1 1 0 0 0 0 0
.................................................................................................TGCTCCAGAACCCACCCACTAGCCGG................................................................................................................................ 26 1 20 0.05 1 0 1 0 0 0 0
........................TACTCTAGTCTGAGGAGCTCAGGTT.......................................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................ACTAGCCGGCGAGATCTGGCCGGACA............................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
......................TATACTCTGGTCTGAGGAGCTCAGGT........................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................TGGCCGGACACAGCGTGCAAC.................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0
................................................................................................................................TCTGGCCGAACACAGCGTGCAACTCC................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................TGTGGCCGGACACAGCGTGCAACTCC................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................ATGCCACCTCACTGTTCGTTA................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................CTGGCCGGACACAGCGTGCAACTCT................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
...............................GTCTGAGGAGCTCAGGTTTGAAC..................................................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
............................................................................................................................GACATCTGGCCGAACACAGCGTAC....................................................................................................... 24 3 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................GATCTGGCCGGACACAGCGTGCAACTCCC................................................................................................ 29 0 20 0.05 1 1 0 0 0 0 0
........................TACTCCGGGCTGAGGAGCTCAGG............................................................................................................................................................................................................ 23 2 20 0.05 1 1 0 0 0 0 0
................................................................................................................................TCTGGCCGGACACAGCGTGC....................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................TCTGGCCGGACACAGCGTGCAACGC.................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................................TCCACCCACTAGCCGGCGAGATCTT....................................................................................................................... 25 2 20 0.05 1 1 0 0 0 0 0
.........................ACTCTGGTCTGAGGAGCTCAGGT........................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................CAGAACCCACCCACTAGCCGGCGA............................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................CTGGCCGGACACAGCGTGCAAC.................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................CTGGCCGGACACAGCGTGCAACT................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 1
.........................ACTCTGGTGTGAGGAGCTCAGG............................................................................................................................................................................................................ 22 1 20 0.05 1 1 0 0 0 0 0
........................TACTCTGGTCTGAGGAGCTCAGGTTTG........................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................CACTAGCCGGCGAGATCTGGC..................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0
.....................................................................................................CCAGAACCCACCCACTAGCC.................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................TTTTCCAGAACCCACCCACTAGCCGG................................................................................................................................ 26 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................CCAGAACCCACCCACTAGCCGGCGAGA........................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................CCACCCACTAGCCGGCGAGATCTGG...................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..........................CTCTGGTCTGAGGAGCTCAGG............................................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
........................TACTCTGGGCTGAGGAGCTCA.............................................................................................................................................................................................................. 21 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................CCCACTAGCCGGCGAGATCTGGCC.................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................CTGGCCGGACACAGCGTGCAACTCCC................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................ATCTGGCCGGACACAGCGTGCAACTC.................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
.......................................................ACGCTGTTCGTGGGGTCGCG................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................TCTGGCCGTACACAGCGTGCAACTC.................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................CAGAACCCGCCCACTAGCCGGCGAGA........................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
........CCGAAGGATCCTAATATACTCTGGTCT........................................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................CCCACTAGCCGGCGAGATCTGG...................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0
.......................................................................................................AGAACCCACCCACTAGCCGGC............................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................CCACTAGCCGGCGAGATCTGGC..................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1 0
........................TACTCTGGTCTGAGGAGCTCA.............................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................ATCTGGCCGGACACAGCGTGCAAC.................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................GATCTGGCCGGACACAGCGTGCAA..................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
......................TATACTCTGGTCTGAGGAGCTCAG............................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................ACTAGCCGGCGAGATCTGG...................................................................................................................... 19 0 20 0.05 1 0 0 0 0 1 0
................................................................................................GTGTTCCAGAACCCACCCACTAGC................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
.......................................................ACGCTGTTCGTGGGGTCGCGCA.............................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CCCCTAGAGGCTTCCTAGGATTATATGAGACCAGACTCCTCGAGTCCAAACTGGGTGCGACAAGCACCCCAGCGCGTGCGTAGTAGTACGCACGCCCACAAGGTCTTGGGTGGGTGATCGGCCGCTCTAGACCGGCCTGTGTCGCACGTTGAGGGAGGAGAGCAGGCTATATAGGACTCTACGGTGGAGTGACAAGCAATGTAACAACTTCAAGTAGGTCGTTTCCATTAAGTAACTGCTCACCAAGTCTA
***************************************************((((((((..(((((.....((((((((....))))))))((((........)))).)))))...(((((........)))))..))))))))..................(((.(((...((((.......)))).))))))...****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body		 V106
head
 V055
head
.......AGGCTTCCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 27 0 20 4.10 82 74 5 2 1 0 0
....................................................................................AGTACGCACGCCCACAAGGTCTTGGGT............................................................................................................................................ 27 0 1 4.00 4 4 0 0 0 0 0
............................................................................................................................................................GGAGAGCAGGCTATATAGGACTCT....................................................................... 24 0 1 3.00 3 3 0 0 0 0 0
................................................................................TAGTAGTACGCACGCCCACAAGGTC.................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0
........GGCTTCCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 26 0 20 1.50 30 26 4 0 0 0 0
.........GCTTCCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 25 0 20 1.45 29 23 1 2 3 0 0
............................................................................................................................CTCTAGACCGGCCTGTGTCGCACGT...................................................................................................... 25 0 20 1.45 29 29 0 0 0 0 0
........................................CGAGTCCAAACTGGGTGCGACAAGCAC........................................................................................................................................................................................ 27 0 20 1.40 28 9 19 0 0 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTGTCGCACGT...................................................................................................... 28 0 20 1.35 27 25 2 0 0 0 0
..............................................................................................................................CTAGACCGGCCTGTGTCGCACGT...................................................................................................... 23 0 20 1.20 24 12 10 1 1 0 0
.............................................................................................................................TCTAGACCGGCCTGTGTCGCACGT...................................................................................................... 24 0 20 1.15 23 20 1 1 1 0 0
............................................................................................................................................................GGAGAGCAGGCTATATAGGACTC........................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................GTAGGTCGTTTCCATTAAGTAACTGC............ 26 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................CTCTAGACCGGCCTGTGTCGCACGTT..................................................................................................... 26 0 20 1.00 20 18 1 0 1 0 0
.....................................................................................GTACGCACGCCCACAAGGTCTTGGG............................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................AGAGCAGGCTATATAGGACTCTAC..................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...............................................................................GTAGTAGTACGCACGCCCACAAGGT................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
..................................................................CCCCAGCGCGTGCGTAGTAGTACGC................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................AGAGCAGGCTATATAGGACTCTACG.................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..........CTTCCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 24 0 20 0.95 19 2 13 4 0 0 0
...........................................................................................................................GCTCTAGACCGGCCTGTGTCGCACGT...................................................................................................... 26 0 20 0.65 13 13 0 0 0 0 0
..........................................................................................................................CGCTCTAGACCGGCCTGTGTCGCACGT...................................................................................................... 27 0 20 0.65 13 13 0 0 0 0 0
........................................CGAGTCCAAACTGGGTGCGACAAGCA......................................................................................................................................................................................... 26 0 20 0.55 11 0 11 0 0 0 0
......GAGGCTTCCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 28 0 20 0.40 8 8 0 0 0 0 0
..................................................................................................................................................................................CTACGGTGGAGTGACAAGCAATGT................................................. 24 0 20 0.35 7 1 6 0 0 0 0
..............................................................................................................................CTAGACCGGCCTGTGTCGCACGTT..................................................................................................... 24 0 20 0.35 7 7 0 0 0 0 0
..............................................................AGCACCCCAGCGCGTGCGTAGTAGT.................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTGTCGCACGTT..................................................................................................... 29 0 20 0.30 6 6 0 0 0 0 0
..................................................................................................................................................................................CTACGGTGGAGTGACAAGCAAT................................................... 22 0 20 0.30 6 0 6 0 0 0 0
..........................................................................................................................CGCTCTAGACCGGCCTGTGTCGCACGTT..................................................................................................... 28 0 20 0.30 6 6 0 0 0 0 0
.............CCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 21 0 20 0.25 5 0 4 1 0 0 0
...............................................................................................................................TAGACCGGCCTGTGTCGCACGT...................................................................................................... 22 0 20 0.25 5 4 1 0 0 0 0
.............................................................................................................................TCTAGACCGGCCTGTGTCGCACGTT..................................................................................................... 25 0 20 0.25 5 3 2 0 0 0 0
........GGCTTCCTAGGATTATATGAGACCA.......................................................................................................................................................................................................................... 25 0 20 0.25 5 5 0 0 0 0 0
...............................................................................................CCACAAGGTCTTGGGTGGGTGAT..................................................................................................................................... 23 0 20 0.25 5 0 5 0 0 0 0
.......AGGCTTCCTAGGATTATATGAGACCA.......................................................................................................................................................................................................................... 26 0 20 0.25 5 5 0 0 0 0 0
.............................................................................................................................................................GAGAGCGGGCTATATAGGACTCTACG.................................................................... 26 1 4 0.25 1 0 0 0 1 0 0
................................................................................................................................AGACCGGCCTGTGTCGCACGTTGAG.................................................................................................. 25 0 20 0.25 5 5 0 0 0 0 0
...............................................................................................................................TAGACCGGCCTGTGTCGCACGTT..................................................................................................... 23 0 20 0.20 4 3 1 0 0 0 0
.....................................................GGTGCGACAAGCACCCCAGCGCGT.............................................................................................................................................................................. 24 0 20 0.20 4 4 0 0 0 0 0
....................................................................................................................................................TTGAGGGAGGAGAGCAGGCTAT................................................................................. 22 0 20 0.20 4 0 4 0 0 0 0
................................................................................................CACAAGGTCTTGGGTGGGTGAT..................................................................................................................................... 22 0 20 0.20 4 3 1 0 0 0 0
...................................................TGGGTGCGACAAGCACCCCAGCGCGT.............................................................................................................................................................................. 26 0 20 0.20 4 0 3 1 0 0 0
........................................CGAGTCCAAACTGGGTGCGACAAG........................................................................................................................................................................................... 24 0 20 0.20 4 3 0 1 0 0 0
.......AGGCTTCCTAGGATTATATGAGACC........................................................................................................................................................................................................................... 25 0 20 0.20 4 4 0 0 0 0 0
................................................................................................................................AGACCGGCCTGTGTCGCACGT...................................................................................................... 21 0 20 0.20 4 4 0 0 0 0 0
.................................................................................................................................................ACGTTGAGGGAGGAGAGCAGGCTAT................................................................................. 25 0 19 0.16 3 2 1 0 0 0 0
.........................................................................................................................................................GGAGGAGAGCAGGCTATAT............................................................................... 19 0 13 0.15 2 1 1 0 0 0 0
.........................................GAGTCCAAACTGGGTGCGACAAGCA......................................................................................................................................................................................... 25 0 20 0.15 3 0 0 2 0 1 0
.....................................................................................................................................................TGAGGGAGGAGAGCAGGCTAT................................................................................. 21 0 20 0.15 3 2 1 0 0 0 0
..................................................................................................CAAGGTCTTGGGTGGGTGAT..................................................................................................................................... 20 0 20 0.15 3 0 3 0 0 0 0
..............................................................................................................................CTAGACCGGCCTGTGTCGCACGTTG.................................................................................................... 25 0 20 0.15 3 2 1 0 0 0 0
.......................................TCGAGTCCAAACTGGGTGCGACAAGCAC........................................................................................................................................................................................ 28 0 20 0.15 3 3 0 0 0 0 0
................................................................................................................................................................................CTCTACGGTGGAGTGACAAGCAATGT................................................. 26 0 20 0.15 3 2 1 0 0 0 0
........................................................................................................................GCCGCTCTAGACCGGCCTGTGTCGCAC........................................................................................................ 27 0 20 0.15 3 3 0 0 0 0 0
...............................................................................................CCACAAGGTCTTGGGTGGGTGATCG................................................................................................................................... 25 0 20 0.15 3 3 0 0 0 0 0
...........................................................................................................................GCTCTAGACCGGCCTGTGTCGCACGTT..................................................................................................... 27 0 20 0.15 3 3 0 0 0 0 0
..........................................................................................................................CGCTCTAGACCGGCCTGTGTCGCA......................................................................................................... 24 0 20 0.15 3 2 1 0 0 0 0
.......AGGCTTCCTAGGATTATAGGAGACCAG......................................................................................................................................................................................................................... 27 1 20 0.15 3 3 0 0 0 0 0
...CTAGAGGCTTCCTAGGATTATATGAG.............................................................................................................................................................................................................................. 26 0 20 0.15 3 1 1 1 0 0 0
...................................................................................................................................................GTTGAGGGAGGAGAGCAGGCTAT................................................................................. 23 0 20 0.15 3 2 1 0 0 0 0
............................................................................................................................................GTCGCACGTTGAGGGAGGAGAGCAG...................................................................................... 25 0 18 0.11 2 0 2 0 0 0 0
..............................................................................................................................................CGCACGTTGAGGGAGGAGAGCAGGCT................................................................................... 26 0 19 0.11 2 1 1 0 0 0 0
..................................................................................................................................................CGTTGAGGGAGGAGAGCAGGCTAT................................................................................. 24 0 19 0.11 2 2 0 0 0 0 0
........GGCTTCCTAGGATTATAGGAGACCAG......................................................................................................................................................................................................................... 26 1 20 0.10 2 2 0 0 0 0 0
..........................................................................................................................CGCTCTAGACCGGCCTGTGTCGCACG....................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTGTCGCACG....................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0
.......................................................TGCGACAAGCACCCCAGCGCGTGC............................................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0 0
.....................................CCTCGAGTCCAAACTGGGTGCGACAAG........................................................................................................................................................................................... 27 0 20 0.10 2 1 1 0 0 0 0
...................................................................................................................................................................................TACGGTGGAGTGACAAGCAATGT................................................. 23 0 20 0.10 2 0 2 0 0 0 0
.........GCTTCCTAGGATTATATGAGACCA.......................................................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................GGTGATCGGCCGCTCTAGACCGGCCT................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0 0
..............................................................................................................................CTAGACCGGCCTGTATCGCACGT...................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0
.......AGGCTTCCTAGGATTATAAGAGACCAG......................................................................................................................................................................................................................... 27 1 20 0.10 2 2 0 0 0 0 0
..........CTTCCTAGGATTATATGAGACCAGA........................................................................................................................................................................................................................ 25 0 20 0.10 2 1 1 0 0 0 0
...................................................................................................................................CCGGCCTGTGTCGCACGTTGAG.................................................................................................. 22 0 20 0.10 2 1 1 0 0 0 0
.......................................................................................................................................................AGGGAGGAGAGCAGGCTAT................................................................................. 19 0 20 0.10 2 1 1 0 0 0 0
................................................................................................................................AGACCGGCCTGTGTCGCACGTT..................................................................................................... 22 0 20 0.10 2 1 0 0 0 1 0
.............................................................................................................................CCTAGACCGGCCTGTGTCGCACGT...................................................................................................... 24 1 20 0.10 2 0 2 0 0 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTGTCGCAC........................................................................................................ 26 0 20 0.10 2 0 2 0 0 0 0
.................................................................................................................................................................................TCTACGGTGGAGTGACAAGCAATGT................................................. 25 0 20 0.10 2 1 1 0 0 0 0
.........................................................................................................TTGGGTGGGTGATCGGCCG............................................................................................................................... 19 0 20 0.10 2 0 1 0 0 1 0
......GAGGCTTCCTAGGATTATATGAGACCA.......................................................................................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0
............................................................................................................................CTCTAGACCGGCCTGTGTCGCAC........................................................................................................ 23 0 20 0.10 2 1 1 0 0 0 0
................................................................................................................................................................................CTCTACGGTGGAGTGACAAGCAAT................................................... 24 0 20 0.10 2 0 2 0 0 0 0
.......................................................................................................................GGCCGCTCTAGACCGGCCTGTGTCGC.......................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
...............................................................................................CCACAAGGTCTTGGGTGGGTGATCGG.................................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0 0
..............................................................................................CCCACAAGGTCTTGGGTGGGTGAT..................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0
......................................................................................................................................................GAGGGAGGAGAGCAGGCTAT................................................................................. 20 0 20 0.10 2 1 1 0 0 0 0
...........................................................................................................................GCTCTAGACCGGCCTGTGTCGCAC........................................................................................................ 24 0 20 0.10 2 2 0 0 0 0 0
..............................................................................................................................CTAGACCGGCCTGTTTCGCACGT...................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0
.....................................................................................................GGTCTTGGGTGGGTGATCGGCCG............................................................................................................................... 23 0 20 0.10 2 1 1 0 0 0 0
.....................................................................................................................................................................................CGGTGGAGTGACAAGCAATGT................................................. 21 0 20 0.10 2 1 0 0 0 1 0
..........................................AGTCCAAACTGGGTGCGACAAGCAC........................................................................................................................................................................................ 25 0 20 0.10 2 1 0 0 1 0 0
.....................................................................................................GGTCTTGGGTGGGTGATCGGCC................................................................................................................................ 22 0 20 0.10 2 2 0 0 0 0 0
............TCCTAGGATTATATGAGACCAGACT...................................................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTGTCGC.......................................................................................................... 24 0 20 0.10 2 0 2 0 0 0 0
..........................................................................................................................CGCTCTAGACCGGCCTGTGTCGCAC........................................................................................................ 25 0 20 0.10 2 2 0 0 0 0 0
.......................................................TGCGACAAGCACCCCAGCGCGTGCGT.......................................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
..................................................................................................................................................CGTTGAGGGAGGAGAGCAGGCTATAT............................................................................... 26 0 10 0.10 1 0 1 0 0 0 0
...................................................................................................................................................GTTGAGGGAGGAGAGCAGGCTATAT............................................................................... 25 0 11 0.09 1 1 0 0 0 0 0
....................................................................................................................................................TTGAGGGAGGAGAGCAGGCTATAT............................................................................... 24 0 12 0.08 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGGGAGGAGAGCAGGCTATATAGG............................................................................ 26 0 12 0.08 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGGGAGGAGAGCAGGCTATAT............................................................................... 23 0 12 0.08 1 1 0 0 0 0 0
......................................................................................................................................................GAGGGAGGAGAGCAGGCTATATAG............................................................................. 24 0 13 0.08 1 0 0 0 1 0 0
.......................................................................................................................................................AGGGAGGAGAGCAGGCTATATAG............................................................................. 23 0 13 0.08 1 1 0 0 0 0 0
......................................................................................................................................................GAGGGAGGAGAGCAGGCTATAT............................................................................... 22 0 13 0.08 1 1 0 0 0 0 0
..........................................................................................................................................................GAGGAGAGCAGGCTATATAGGCCT......................................................................... 24 1 14 0.07 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................TCTCAATTAAGTAACTGCTA.......... 20 3 14 0.07 1 0 0 0 0 0 1
.............................................................................................................................................................................................................................TCTCCATAAAGTAAATGCTC.......... 20 3 15 0.07 1 0 0 0 0 0 1
...................................................................................................................................................GTTGAGGGAGGAGAGCAGGCTATA................................................................................ 24 0 17 0.06 1 0 1 0 0 0 0
....................................................................................................................................CGGCCTGTGTCGCACGTTGAGGGAG.............................................................................................. 25 0 18 0.06 1 1 0 0 0 0 0
............................................................................................................................................GTCGCACGTTGAGGGAGGAGAGCA....................................................................................... 24 0 18 0.06 1 1 0 0 0 0 0
........................................................................................................................................CTGTGTCGCACGTTGAGGGAGGAGA.......................................................................................... 25 0 18 0.06 1 1 0 0 0 0 0
........................................................................................................................................CTGTGTCGCACGTTGAGGGAGGAGAG......................................................................................... 26 0 18 0.06 1 1 0 0 0 0 0
......................................................................................................................................GCCTGTGTCGCACGTTGAGGGAGGAG........................................................................................... 26 0 18 0.06 1 1 0 0 0 0 0
.....................................................................................................................................GGCCTGTGTCGCACGTTGAGGGAG.............................................................................................. 24 0 18 0.06 1 1 0 0 0 0 0
.......................................................................................................................................CCTGTGTCGCACGTTGAGGGAG.............................................................................................. 22 0 18 0.06 1 0 1 0 0 0 0
.........................................................................................................................................TGTGTCGCACGTTGAGGGAGG............................................................................................. 21 0 18 0.06 1 1 0 0 0 0 0
..................................................................................................................................ACCGGCCTGTGTCGCACGTTGAGGGAG.............................................................................................. 27 0 18 0.06 1 0 1 0 0 0 0
..........................................................................................................................................GTGTCGCACGTTGAGGGAGGAGAG......................................................................................... 24 0 18 0.06 1 1 0 0 0 0 0
..........................................................................................................................................GTGTCGCACGTTGAGGGAGGAGAGCA....................................................................................... 26 0 18 0.06 1 1 0 0 0 0 0
...........................................................................................................................................TGTCGCACGTTGAGGGAGGAGAGCAG...................................................................................... 26 0 18 0.06 1 1 0 0 0 0 0
..............................................................................................................................................CGCACGTTGAGGGAGGAGAGCAGGCTAT................................................................................. 28 0 19 0.05 1 1 0 0 0 0 0
................................................................................................................................................CACGTTGAGGGAGGAGAGCAGGCTA.................................................................................. 25 0 19 0.05 1 1 0 0 0 0 0
...............................................................................................................................................GCACGTTGAGGGCGGAGAGCA....................................................................................... 21 1 19 0.05 1 1 0 0 0 0 0
................................................................................................................................................CACGTTGAGGGAGGAGAGCAGGCTAT................................................................................. 26 0 19 0.05 1 1 0 0 0 0 0
................................................................................................................................................CACGTTGAGGGAGGAGAGCAGGCT................................................................................... 24 0 19 0.05 1 1 0 0 0 0 0
.............CCTAGGATTATATGAGACCAGACTCC.................................................................................................................................................................................................................... 26 0 19 0.05 1 1 0 0 0 0 0
............TCCTAGGATTATATGAGACCAGACTCCT................................................................................................................................................................................................................... 28 0 19 0.05 1 1 0 0 0 0 0
...............................................................................................................................................ACACGTTGAGGGAGGAGAGCAGGCTAT................................................................................. 27 1 19 0.05 1 1 0 0 0 0 0
.................GGATTATATGAGACCAGACTCCTCGAGT.............................................................................................................................................................................................................. 28 0 19 0.05 1 0 0 1 0 0 0
................................................................................................................................................CAAGTTGAGGGAGGAGAGCAGGCT................................................................................... 24 1 19 0.05 1 0 1 0 0 0 0
........................................CGAGTCCAAACTGGGTGCGACAAGCACCC...................................................................................................................................................................................... 29 0 20 0.05 1 0 1 0 0 0 0
.......AGGCTTCCTAGGATTAGATGAGACC........................................................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................CGCTCGAGACCGGCCTGTGTCGCACGT...................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
........GGCTTCCTAGGATTATAAGAGACCAG......................................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................CTAGACCGGCCTGTGTCGCACGTTGAG.................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0
.........................................................CGACAAGCACCCCAGCGCGTGCGT.......................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
.........................................GAGTCCAAACTGGGTGCGACAAGC.......................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................GTCTTGGGTGGGTGATCGGCCGCTCT........................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.........................................................CGACAAGCACCCCAGCGCGTGCGTA......................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
................................................................................................CACAAGGTCTTGGGTGGGTCAT..................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................CGCTCTAGACCGGCCTGTGTCGC.......................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................CTCTAGACCGGCCTGTGTCGCACGTTG.................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................ACCGGCCTGTGTCGCACGTTGAGGG................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
.......AGGCTGCCTAGGATTATAGGAGACCAG......................................................................................................................................................................................................................... 27 2 20 0.05 1 1 0 0 0 0 0
...............................................................................................................GGGTGATCGGCCGCTCTAGACCGG.................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................CGCTCTAGACCGGCCTGTGTCAC.......................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
........................................CGAGTCCAAACTGGGTGCGACAAGC.......................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................GTCTTGGGTGGGTGATCGGCCGC.............................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
...........TTCCTAGGATTATATGAGACTAGA........................................................................................................................................................................................................................ 24 1 20 0.05 1 0 1 0 0 0 0
................................................................................................................GGTGATCGGCCGCTCTAGA........................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTGTGTC.......................................................................................................... 24 2 20 0.05 1 0 1 0 0 0 0
.....................................................................................................GGTCTTGGGTGGGTGATCG................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
.......AGGCTTCCTAGGATTATATGAGACCTG......................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
...CTAGAGGCTTCCTAGGATTATATGAGA............................................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
.......AGGCTTCCTAGGATTATACGAGACCAG......................................................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
...........................................................ACAAGCACCCCAGCGCGTGCGTAGT....................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................GACCGGCCTGTGTCGCACGTTTAGG................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.........................................................CGACAAGCACCCCAGCGCGTGCGTAGT....................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................CGGTGGAGTGACAAGCAATG.................................................. 20 0 20 0.05 1 0 1 0 0 0 0
........................................CGAGTCCAAACTGGGTGCGCCAAGCAC........................................................................................................................................................................................ 27 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................CTAGACCGGCCTGTGTCGCACGTTGA................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTGT............................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................GCCGCTCTAGACCGGCCTGTGTCGC.......................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................CTCTAGACCGGCCCGTGTCGCACGT...................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
.......AGGCTTCCTAGGATTATATGAGAG............................................................................................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................GCTCTAGACCGGCCTGTGTCGCACG....................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................GACCGGCCTGTGTCGCACGTTGAG.................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
....TAGAGGCTTCCTAGGATTATATGGG.............................................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0
........................................CGAGTCCAAACTGGGTGCAACAAGCAC........................................................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................GGCAGGAGACCAGGCTATAT............................................................................... 20 2 20 0.05 1 0 0 1 0 0 0
...........................................................................................................GGGTGGGTGATCGGCCGCT............................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
.........GGTTCCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
...CCAGAGGCTTTCTAGGATTATATGAG.............................................................................................................................................................................................................................. 26 2 20 0.05 1 0 1 0 0 0 0
..........................................................GACAAGCACCCCAGCACGTGCGTA......................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................GGTGGAGTGACAAGCAATGT................................................. 20 0 20 0.05 1 0 0 0 0 1 0
..........CTTCCTAGGATTATATGAGATCGG......................................................................................................................................................................................................................... 24 2 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................CCGGCCTGTGTCGCACGTTGTGTG................................................................................................ 24 2 20 0.05 1 0 1 0 0 0 0
...................................................................................................AAGGTCTTGGGTGGGTGATCGG.................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................CGCTCTAGACCGGCCTGTGTCGCAAGT...................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
.....................................CCTCGAGTCCAAACTGGGTGCGACAAGCA......................................................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
..............................ACAGACTCCCCGAGTACAA.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0
................................................................................................CACAAGGTCTTGGGTGGGTGATCG................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
...................................CTCCTCGAGTCCAAACTGGGTGCGACAAG........................................................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................ACCGGCCTGTGTCGCACGTTGAGG................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................GTGGAGTGACAAGCAATGT................................................. 19 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................GCCGCACTAGACCGGCCTGTGTCGCACGT...................................................................................................... 29 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................TCCGGCCTGTGTCGCACGTTGAG.................................................................................................. 23 1 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................TCTAGACCGGCCTGTGTCGCACGTTG.................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
...................................TTCCTCGAGTCCAAACTGGGTGCGAC.............................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
.............CCTAGGATTATATGAGACCAGA........................................................................................................................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................ACAAGGTCTTGGGTGGGTGATC.................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................CCTACGGTGGAGTGACAAGCAAT................................................... 23 1 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................CTGAGGGAGGAGAGCAGGCTAT................................................................................. 22 1 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................TCTACGGTGGAGTGACAAGCAATG.................................................. 24 0 20 0.05 1 0 0 0 1 0 0
..............................................................................................................................CTAGACCGGCCTGTGTCGCACGTGG.................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................AGGAGAGCAGGCTATATAGGGC.......................................................................... 22 1 20 0.05 1 0 1 0 0 0 0
........GGCTTCCTAGGACTATATGAGACCAG......................................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
..................................ACTCCTCGAGTCCAAACTGGGTGCG................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
......TAGGCTTCCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................TACGGTGGAGTGACAAGCAAT................................................... 21 0 20 0.05 1 1 0 0 0 0 0
........GGCTTCCTAGGATTATATGATACCAG......................................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
...........TTCCTAGGATTATATGAGACCAGA........................................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
........................................CGAGTCCAAACTGGGTGCGACAAGCAT........................................................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0
............................................................CAAGCACCCCAGCGCGTGCGTAGT....................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
........................................................GCGACAAGCACCCCAGCGCGT.............................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................GGGAGGAGAGCAGGCTATA................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................CTAGCCCGCCCTGTGTCGCACGTT..................................................................................................... 24 2 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................................................................ACGGTGGAGTGACAAGCAA.................................................... 19 0 20 0.05 1 1 0 0 0 0 0
...................................................CGGGTGCGACAAGCACCCCAGCGC................................................................................................................................................................................ 24 1 20 0.05 1 0 1 0 0 0 0
...................................CTCCTCGAGTCCAAACTGGGTGCGA............................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................AGACCGGCCTGTGTCGCACGTTGAGG................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
.......................................TCGAGTCCAAACTGGGTGCGACAAGCA......................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
........................................CGAGTCCAAACTGGGTGCGACAA............................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0
......................................................GGGCGACAAGCACCCCAGCGCGT.............................................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0
........................................CGAGTCCAAACTGGGTGCGACAAGCACC....................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................CGGCCTGTGTCGCACGTTGAG.................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................GGTGGGTGATCGGCCGCTCT........................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0 0
.........................................GAGTCCAAACTGGGTGCG................................................................................................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0 0
......................................................GTGCGACAAGCACCCCAGCGCGTGCGT.......................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................CCGGCCTGTGTCGCACGTTGAGGG................................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................GACCGGCCTGTGTCGCACGTTGAGG................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
................................................................CACCCCAGCGCGTGCGTAGTA...................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................AGACCGGCCTGTGTCGCACGTTG.................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
.........................................GAGTCCAAACTGGGTGCGACAAGCAC........................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................CCGGCCTGTGTCGCACGTTGAGG................................................................................................. 23 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................................CTACGGTGGAGGGACAAGCAAT................................................... 22 1 20 0.05 1 0 1 0 0 0 0
.......................................TCGAGTCCAAACTGGGTGCGACAAG........................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.......AGGCTTCCTAGGATTATATGAGATCAG......................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................................CTACGGTGGAGGGACAAGCAATGT................................................. 24 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................CTAGACCGGCCTGTGTCGCACG....................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
...................................................TGGGTGCGACAAGCACCCCAGCGCTT.............................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0
........GGCTTCCTAGGATTATATGAGACCGG......................................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
...........TTCCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTGTTGCACGT...................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTTTCGCACGT...................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................GGCCTGTGTCGCACGTTGAG.................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................CGGCCTGTGTCGCACGTTGTGGG................................................................................................ 23 1 20 0.05 1 0 1 0 0 0 0
................................................................................................CACAAGGTCTTGGGTGGGTGATCGG.................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTGTCGCA......................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................GGGTGATCGGCCGCTCTAGAC....................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................GACCGGCCTGTGTCGCACGTT..................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
...CTATAGTCTTCCTAGCATTATATGAGA............................................................................................................................................................................................................................. 27 3 20 0.05 1 0 0 1 0 0 0
...CTAGAGGCTTCCTAGGATTAT................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0
.........GCTTCCTAGGATTATATGAGAC............................................................................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................ACCGGCCTGTGTCGCACGT...................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
.......AGGCTTCCTAGGATTATATGAGGCCAG......................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
.....................................................GGTGCGACAAGCACCGCAGCGCGT.............................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
............................................................................................................................CTCTAGACCGGCCTGTGTCGCACGTGG.................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................CTAGACCGGCCTGTGTCGCACCT...................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
........................................CGAGTCCAAACTGGGTGCGAC.............................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................CTAGACCGGCCTGTGTCGCATGGT..................................................................................................... 24 2 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................GGGAGGAGAGCAGGCTAT................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................CCGCTCTAGACCGGCCTGTATCGCACGT...................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
............................................................................................................................CTCTAGACCGGCCTGAGTCGCACG....................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................TGGGTGATCGGCCGCTCTAGAC....................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0
........................................CGAGTCCAAACTGGGTGCGACGAGCA......................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
...........TTCCTAGGATTATATGAGACCAGACT...................................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
...GTAGAGGCTTCCTAGGATTAT................................................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 1 0
........GGCTTCCTAGGATTATATGAGACCAGT........................................................................................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................AGGAGAGCAGGCTATATAGGCCTC........................................................................ 24 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................................GCCGCTCTAGACCGGCCTTTGTCGCAC........................................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0
..........CCTCCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
.............................................CCAAACTGGGTGCGACAAGCAC........................................................................................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................CGCTCTAGACCGGCCTGTGTCTC.......................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................ACCGGCCTGTGTCGCACGTTGAG.................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
........AGCTTCCTAGGATTATATGAGACCAG......................................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
.........................................GAGTCCAAACTGGGTGCGACA............................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1 0
..................................ACTCCTCGAGTCCAAACTGGGTGCGA............................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................GTGGGTGATCGGCCGCTCTAGACC...................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
.........GCTTCCTAGGATTATATGAAACCAGACT...................................................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................CTCTACGGTGGAGTGACAAGCAATG.................................................. 25 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................CCACAAGGTCTTGGGTGGGTGTT..................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
......GAGGCTTCCTAGGATTATATGAGATCAG......................................................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0
.........................................GAGTCCAAACTGGGTGCGACAAG........................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12943:49482-49732 - dan_866 GG-----GGATCTCCGAAGGATCCTAATATACTCTGGTCTGAGGAGCTCAGGTTTGACCCACGCTGTTCGTGGGGTCGCGCACGCATCATCATGCGT---------------------------------------GCGGGTGTTCCAGAACCCACCCACTAGCCGGCGAGATCTGGCCGGACACAGCGTGCAACTCCCTCCTCTCGTCCGATATATCCTGAGATGCCACCTCACTGTTCGTTA-CATTGTTGAAGTTCATCCAGCAAAGGTAATTCATTGA--------------CGAGTGGTTCA----GAT
droBip1 scf7180000394971:6142-6382 + AG-----GGATCTCCGAAGTATCCTAATATGCTCTGTTCTGAAGAGCTCAGGTTTGACCCACGCTGTTCGTGAGGTCGTGCACGCATCATTATCGATTTAATTTATGATTCCCGAGGCAGCATCGAGGGGAGAGAAGGGGGTGTTTCAGAACCCACCCACTAGCCGGCGAGATCTGGCCGGACACAGCGTGCAACCCCTTCCTCTCGTCCGATATATCCAGAGATGCCACCTCACTGTTCGTTA-CA-------------------------------------------------------------------
droKik1 scf7180000302679:1509700-1509768 - CCTGGTGGGCTGCTT--------------------------------------------------CTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGCCTCGTTGAGATATTTCCGGTCAAGGTATGCG--ATT------------------TAATTGA----TGT
droFic1 scf7180000453924:1311909-1311910 + AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777227:170840-170895 + G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAGCTCTTTCCAGTGAAGGTACATT--TTT---TAGGACCCTTAAGATTGGTTTT----TGT
droBia1 scf7180000301468:1200766-1200842 - TG-----GGATGCCT--------------------------------------------------CTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTGCTCGTAGAGCTCTTTCCAGCTAAGGTGGATT--CTAAATCTTTTC-----CCAGAAATTCG----TAT
droTak1 scf7180000413924:23174-23214 - GT------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AATAGTTCAGGTCTATTCAGCTAAGGTGGGT----------------------------AAA----AAT
droEug1 scf7180000409554:2765048-2765124 - TG-----GGATGTCT--------------------------------------------------CTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTCCTTGTGGAGATCTTTCCGGCCAAGGTGGGTT--CTATTCTGTAACTGC--TGAGAGCTTTA-------
dm3 chr2L:3334432-3334482 + TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGAAATGTTCCCCGTCAAGGTACGTT--CCAAAG-----C-----CAAAAGGTTTA----AAA
droSim2 2l:3189393-3189437 + G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAACTTTTTCCAGTAAAGGTACGTT--TAAA--------------GATATATTTA----AAT
droSec2 scaffold_5:1472100-1472144 + G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAACTGTTTCCAGTAAAGGTACGTT--TAAA--------------GATATATTTA----AAT
droYak3 3R:7297335-7297374 + CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGAGCTGCTCCCAGCTAAGGTGAGTG--CT-----------------------TCG----GAA
dp5 4_group3:6258783-6258844 - AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGAACTTTTTCCATCGAAGGTAAGAA--GCT--CTCTCCCTTC--CGAGGAGTCTCATCAGTA
droPer2 scaffold_6:1781877-1781923 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAAAGGTAGGCT--GCAAGTTGATGCCGTGGAAAGTGTTTAT----ATT
droWil2 scf2_1100000004945:773916-773960 + TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGAGCTTTTCCCAGCCAAGGTAAGAG--TAA----------------TGAGATTCA----TTT
droVir3 scaffold_12963:8118505-8118563 + TT------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTCCTGGTGGAGGTGATGCCAGCCAAGGTAAGTC--CCTAAT------------TTGAAATCTT----GTC
droMoj3 scaffold_6500:740312-740380 + CT---------------------------------------------------------------GTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTGTTGGTCGAACAAATGCCAGCCAAGGTGAGTC--CACATTAAAGGT-----CCTGGAGCAGA----GAT
droGri2 scaffold_15252:7544759-7544808 + TT------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTGCTGGTGGAGGTGATGCCAGCTAAGGTAAGTC--CAC---------------------TTAA----ACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GG-----GGATCTCCGAAGGATCCTAATATACTCTGGTCTGAGGAGCTCAGGTTTGACCCACGCTGTTCGTGGGGTCGCGCACGCATCATCATGCGT---------------------------------------GCGGGTGTTCCAGAACCCACCCACTAGCCGGCGAGATCTGGCCGGACACAGCGTGCAACTCCCTCCTCTCGTCCGATATATCCTGAGATGCCACCTCACTGTTCGTTA-CATTGTTGAAGTTCATCCAGCAAAGGTAATTCATTGA--------------CGAGTGGTTCA----GATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................TACTCTGGTCTGAGGAGCTCAGG......................................................................................................................................................................................................................................................................23202.90585602000
.............................TACTCTGGTCTGAGGAGCTCAG.......................................................................................................................................................................................................................................................................22201.50303000000
.........................................................................................................................................................................................................................CCTGAGATGCCACCTCACTGTTCGTTA-.....................................................................2711.001100000
.........................................................................................................................................................................................................................CCTGAGATGCCACCTCACTGTTCGT........................................................................2511.001100000
..............................ACTCTGGTCTGAGGAGCTCAGG......................................................................................................................................................................................................................................................................22200.408800000
.............................TACTCTGGTCTGAGGAGCTCAGGT.....................................................................................................................................................................................................................................................................24200.408512000
...........................................................CACGCTGTTCGTGGGGTCGCGCACGCA....................................................................................................................................................................................................................................27200.357700000
.......................................................................................................................................................................................ACAGCGTGCAACTCCCTCCTCT.............................................................................................................22180.336420000
.............................................................................................................................................TGTTCCAGAACCCACCCACTAGCCGG...................................................................................................................................................26200.306330000
.............................................................................................................................................TGTTCCAGAACCCACCCACTAGCCGGC..................................................................................................................................................27200.306600000
............................................................................................................................................................................TCTGGCCGGACACAGCGTGCAACTCCC...................................................................................................................27200.306600000
.......................................................................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCGT..........................................................................................................25180.285410000
.......................................................................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCG...........................................................................................................24180.285500000
.......................................................................................................................................................................................ACAGCGTGCAACTCCCTCCTCTC............................................................................................................23180.285320000
.................................................................................................................................................CCAGAACCCACCCACTAGCCGGC..................................................................................................................................................23200.255230000
............................................................................................................................................................................TCTGGCCGGACACAGCGTGCAACTCC....................................................................................................................26200.255500000
.......................................................................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCGTC.........................................................................................................26180.224400000
............................................................................................................................................................................TCTGGCCGGACACAGCGTGCAACTC.....................................................................................................................25200.204310000
........................................................................................................................................................CCACCCACTAGCCGGCGAGATCTG..........................................................................................................................................24200.204400000
........................................................................................................................................................................................CAGCGTGCAACTCCCTCCTCTCG...........................................................................................................23180.173300000
.........................................................................................................................................................CACCCACTAGCCGGCGAGATCTG..........................................................................................................................................23200.153210000
..........................................................................................................................................................ACCCACTAGCCGGCGAGATCTGG.........................................................................................................................................23200.153030000
...........................................................CACGCTGTTCGTGGGGTCGCGCACG......................................................................................................................................................................................................................................25200.153111000
..............................ACTCTGGTCTGAGGAGCTCAG.......................................................................................................................................................................................................................................................................21200.153300000
............................................................ACGCTGTTCGTGGGGTCGCGCACGCA....................................................................................................................................................................................................................................26200.153300000
.............................................................................................................................................TGTTCCAGAACCCACCCACTAGC......................................................................................................................................................23200.153300000
...........................................................CACGCTGTTCGTGGGGTCGCGCAC.......................................................................................................................................................................................................................................24200.153030000
.......................................................................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCGTCCGA......................................................................................................29180.112200000
........................................................................................................................................................................................CAGCGTGCAACTCCCTCCTCTCGT..........................................................................................................24180.112200000
.......................................................................................................................................................................................ACAGCGTGCAACTCCCTCCTCTCGTCC........................................................................................................27180.112200000
...........................................................................................................................................................................................CGTGCAACTCCCTCCTCTCGTC.........................................................................................................22190.112110000
...........................................................CACGCTGTTCGTGGGGTCGCGCACGC.....................................................................................................................................................................................................................................26200.102200000
.............................TACTCTGGTCTGAGGAGCTCAGGTT....................................................................................................................................................................................................................................................................25200.102101000
........................................................................................................................................................................GAGATCTGGCCGGACACAGCGTGCAAC.......................................................................................................................27200.102200000
.............................................................................................................................................TGTTCCAGAACCCACCCACTAGCC.....................................................................................................................................................24200.102110000
.............................................................................................................................................TGTTCCAGAACCCACCCACTAGCCG....................................................................................................................................................25200.102200000
............................................................................................................................................GTGTTCCAGAACCCACCCACTAG.......................................................................................................................................................23200.102200000
............................................................................................................................................................................TCTGGCCGGACACAGCGTGCAACT......................................................................................................................24200.102110000
.......................................................................................................................................................................................ACAGCGTGCAACTCCCTCCTCC.............................................................................................................22180.061010000
.........................................................................................................................................................................................AGCGTGCAACTCCCTCCTCTCGTC.........................................................................................................24180.061100000
.....................................................................................................................................................................................ACACAGCGTGCAACTCCCTCCTCT.............................................................................................................24180.061100000
.....................................................................................................................................................................................ACACAGCGTGCAACTCCCTCC................................................................................................................21180.061001000
..................................................................................................................................................................................CGGACACAGCGTGCAACTCCCTC.................................................................................................................23180.061100000
...............................................................................................................................................................................GGCCGGACACAGCGTGCAACTCCCT..................................................................................................................25180.061100000
....................................................................................................................................................................................GACACAGCGTGCAACTCCCTCCTCTC............................................................................................................26180.061010000
........................................................................................................................................................................................CAGCGTGCAACTCCCTCC................................................................................................................18180.061001000
.......................................................................................................................................................................................ACAGCGTGCAACTCCCTCCTC..............................................................................................................21180.061100000
.....................................................................................................................................................................................ACACAGCGTGCAACTCCCTCCT...............................................................................................................22180.061100000
....................................................................................................................................................................................GACACAGCGTGCAACTCCCTCCTCT.............................................................................................................25180.061100000
.....................................................................................................................................................................................ACACAGCGTGCAACTCCCTCCTCTCG...........................................................................................................26180.061100000
.................................................................................................................................................................................CCGGACACAGCGTGCAACTCCCTCCTC..............................................................................................................27180.061100000
..............................................................................................................................................................................TGGCCGGACACAGCGTGCAACTCCCTC.................................................................................................................27180.061100000
....................................................................................................................................................................................GACACAGCGTGCAACTCCCTCCT...............................................................................................................23180.061100000
.........................AATATACTCTGGTCTGAGGAG............................................................................................................................................................................................................................................................................21190.051100000
............................................................................................................................................................................................GTGCAACTCCCTCCTCTCGTCCG.......................................................................................................23190.051100000
...................GATCCTAATATACTCTGGTCTGAGGAGC...........................................................................................................................................................................................................................................................................28190.051100000
.............................................................................................................................................................................................TGCAACTCCCTCCTCTCGTCC........................................................................................................21190.051100000
..........................ATATACTCTGGTCTGAGGAGCTCAG.......................................................................................................................................................................................................................................................................25190.051100000
...........................................................................................................................................................................................CGTGCAACTCCCTCCTCTCGTCCG.......................................................................................................24190.051100000
..........................................................................................................................................................................................GCGTGCAACTCCCTCCTCTCG...........................................................................................................21190.051000001
.....................TCCTAATATACTCTGGTCTGAGGAGC...........................................................................................................................................................................................................................................................................26190.051100000
.....................TCCTAATATACTCTGGTCTGAGG..............................................................................................................................................................................................................................................................................23190.051100000
..........................ATATACTCTGGTCTGAGGAGCTCAGG......................................................................................................................................................................................................................................................................26190.051100000
..........................................................................................................................................................................................GCGTGCAACTCCCTCCTCTCGTCCGATA....................................................................................................28190.051100000
............................................................................................................................................................................................GTGCAACTCCCTCCTCTCGTCCGA......................................................................................................24190.051100000
................................TCTGGTCTGAGGAGCTCAGGTTTGACC...............................................................................................................................................................................................................................................................27200.051100000
...............................................................................................................................................................................................................................ATGCCACCTCACTGTTCGTTA-C....................................................................22200.051100000
.............................TACTCTGGTCTGAGGAGCTCAGT......................................................................................................................................................................................................................................................................23200.051100000
.............................TACTCTGGTCTGAGGAGCTCAGGTTTGA.................................................................................................................................................................................................................................................................28200.051100000
..................................................................................................................................................CAGAACCCACCCACTAGCCGGCGAGATC............................................................................................................................................28200.051010000
................................................................................................................................................................................GCCGGACACAGCGTGCAACTCCC...................................................................................................................23200.051100000
........................................................................................................................................................CCACCCACTAGCCGGCGAGATC............................................................................................................................................22200.051100000
...............................................................................................................................................TTCCAGAACCCACCCACTAGCCGGCGAGA..............................................................................................................................................29200.051100000
.......................................................................................................................................................CCCACCCACTAGCCGGCGAGATCTGGCC.......................................................................................................................................28200.051100000
................................TCTGGTCTGAGGAGCTCAGG......................................................................................................................................................................................................................................................................20200.051100000
..................................TGGTCTGAGGAGCTCAGGTTTGACC...............................................................................................................................................................................................................................................................25200.051100000
...............................................................................................................................................TTCCAGAACCCACCCACTAGC......................................................................................................................................................21200.051100000
.........................................................................................................................................................................AGATCTGGCCGGACACAGCGT............................................................................................................................21200.051100000
..........................................................................................................................................................ACCCACTAGCCGGCGAGATCTGGCC.......................................................................................................................................25200.051100000
.................................................................................................................................................CCAGAACCCACCCACTAGCCGGCGAG...............................................................................................................................................26200.051100000
...........................................GAGCTCAGGTTTGACCCACGCT.........................................................................................................................................................................................................................................................22200.051100000
........................................................................................................................................................................GAGATCTGGCCGGACACAGCGTGCAA........................................................................................................................26200.051010000
..........................................................................................................................................................................GATCTGGCCGGACACAGCGTGCAACTC.....................................................................................................................27200.051000001
..............................................................................................................................................................ACTAGCCGGCGAGATCTGGCCGGACA..................................................................................................................................26200.051100000
...........................TATACTCTGGTCTGAGGAGCTCAGGT.....................................................................................................................................................................................................................................................................26200.051100000
..............................................................................................................................................................................TGGCCGGACACAGCGTGCAAC.......................................................................................................................21200.051001000
...............................................................................................................................................................................................................................ATGCCACCTCACTGTTCGTTA-.....................................................................21200.051100000
.............................................................................................................................................................................CTGGCCGGACACAGCGTGCAACTCT....................................................................................................................25200.051100000
..........................................................................................................................................................................GATCTGGCCGGACACAGCGTGCAACTCCC...................................................................................................................29200.051100000
............................................................................................................................................................................TCTGGCCGGACACAGCGTGC..........................................................................................................................20200.051010000
..............................ACTCTGGTCTGAGGAGCTCAGGT.....................................................................................................................................................................................................................................................................23200.051100000
..................................................................................................................................................CAGAACCCACCCACTAGCCGGCGA................................................................................................................................................24200.051100000
.............................................................................................................................................................................CTGGCCGGACACAGCGTGCAAC.......................................................................................................................22200.051100000
.............................................................................................................................................................................CTGGCCGGACACAGCGTGCAACT......................................................................................................................23200.051000010
.............................TACTCTGGTCTGAGGAGCTCAGGTTTG..................................................................................................................................................................................................................................................................27200.051100000
.............................................................................................................................................................CACTAGCCGGCGAGATCTGGC........................................................................................................................................21200.051000001
.................................................................................................................................................CCAGAACCCACCCACTAGCC.....................................................................................................................................................20200.051100000
.................................................................................................................................................CCAGAACCCACCCACTAGCCGGCGAGA..............................................................................................................................................27200.051100000
........................................................................................................................................................CCACCCACTAGCCGGCGAGATCTGG.........................................................................................................................................25200.051100000
...............................CTCTGGTCTGAGGAGCTCAGG......................................................................................................................................................................................................................................................................21200.051100000
...........................................................................................................................................................CCCACTAGCCGGCGAGATCTGGCC.......................................................................................................................................24200.051100000
.............................................................................................................................................................................CTGGCCGGACACAGCGTGCAACTCCC...................................................................................................................26200.051010000
...........................................................................................................................................................................ATCTGGCCGGACACAGCGTGCAACTC.....................................................................................................................26200.051100000
............................................................ACGCTGTTCGTGGGGTCGCG..........................................................................................................................................................................................................................................20200.051100000
.............CCGAAGGATCCTAATATACTCTGGTCT..................................................................................................................................................................................................................................................................................27200.051100000
...........................................................................................................................................................CCCACTAGCCGGCGAGATCTGG.........................................................................................................................................22200.051001000
...................................................................................................................................................AGAACCCACCCACTAGCCGGC..................................................................................................................................................21200.051100000
............................................................................................................................................................CCACTAGCCGGCGAGATCTGGC........................................................................................................................................22200.051000001
.............................TACTCTGGTCTGAGGAGCTCA........................................................................................................................................................................................................................................................................21200.051100000
...........................................................................................................................................................................ATCTGGCCGGACACAGCGTGCAAC.......................................................................................................................24200.051100000
..........................................................................................................................................................................GATCTGGCCGGACACAGCGTGCAA........................................................................................................................24200.051100000
...........................TATACTCTGGTCTGAGGAGCTCAG.......................................................................................................................................................................................................................................................................24200.051100000
..............................................................................................................................................................ACTAGCCGGCGAGATCTGG.........................................................................................................................................19200.051000001
............................................................................................................................................GTGTTCCAGAACCCACCCACTAGC......................................................................................................................................................24200.051100000
............................................................ACGCTGTTCGTGGGGTCGCGCA........................................................................................................................................................................................................................................22200.051100000
droBip1
AG-----GGATCTCCGAAGTATCCTAATATGCTCTGTTCTGAAGAGCTCAGGTTTGACCCACGCTGTTCGTGAGGTCGTGCACGCATCATTATCGATTTAATTTATGATTCCCGAGGCAGCATCGAGGGGAGAGAAGGGGGTGTTTCAGAACCCACCCACTAGCCGGCGAGATCTGGCCGGACACAGCGTGCAACCCCTTCCTCTCGTCCGATATATCCAGAGATGCCACCTCACTGTTCGTTA-CA-------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CCTGGTGGGCTGCTT--------------------------------------------------CTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGCCTCGTTGAGATATTTCCGGTCAAGGTATGCG--ATT------------------TAATTGA----TGTSizeHit CountTotal NormTotal
No Reads
droFic1
AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAGCTCTTTCCAGTGAAGGTACATT--TTT---TAGGACCCTTAAGATTGGTTTT----TGTSizeHit CountTotal NormTotal
No Reads
droBia1
TG-----GGATGCCT--------------------------------------------------CTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTGCTCGTAGAGCTCTTTCCAGCTAAGGTGGATT--CTAAATCTTTTC-----CCAGAAATTCG----TATSizeHit CountTotal NormTotal
No Reads
droTak1
GT------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AATAGTTCAGGTCTATTCAGCTAAGGTGGGT----------------------------AAA----AATSizeHit CountTotal NormTotal
No Reads
droEug1
TG-----GGATGTCT--------------------------------------------------CTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTCCTTGTGGAGATCTTTCCGGCCAAGGTGGGTT--CTATTCTGTAACTGC--TGAGAGCTTTA-------SizeHit CountTotal NormTotal
No Reads
dm3
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGAAATGTTCCCCGTCAAGGTACGTT--CCAAAG-----C-----CAAAAGGTTTA----AAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAACTTTTTCCAGTAAAGGTACGTT--TAAA--------------GATATATTTA----AATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAACTGTTTCCAGTAAAGGTACGTT--TAAA--------------GATATATTTA----AATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGAGCTGCTCCCAGCTAAGGTGAGTG--CT-----------------------TCG----GAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGAGCTGCTCCCAGC................................................2011.00100000010000
dp5
AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGAACTTTTTCCATCGAAGGTAAGAA--GCT--CTCTCCCTTC--CGAGGAGTCTCATCAGTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAAAGGTAGGCT--GCAAGTTGATGCCGTGGAAAGTGTTTAT----ATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGAGCTTTTCCCAGCCAAGGTAAGAG--TAA----------------TGAGATTCA----TTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TT------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTCCTGGTGGAGGTGATGCCAGCCAAGGTAAGTC--CCTAAT------------TTGAAATCTT----GTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................TTGTCCTGGTGGAGGTGATGCCAGCC...............................................2611.001000000000100000000000000000000000000000000000000000000000000000
droMoj3
CT---------------------------------------------------------------GTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTGTTGGTCGAACAAATGCCAGCCAAGGTGAGTC--CACATTAAAGGT-----CCTGGAGCAGA----GATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TT------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTGCTGGTGGAGGTGATGCCAGCTAAGGTAAGTC--CAC---------------------TTAA----ACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:27 PM