ID:

dan_86

 Coordinate:

scaffold_12903:534990-535046 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.6 -22.3 -22.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AATAAATATCATAAAAATAAATATTAAATATTACTTAGTCTCTTTTCATTTACTTTGAGTAATGTTTGTATTGTATTTTCTAAATACATTCTTTATTCCAAGTAGATGAAGTGATTTTCGATCATCAGTTGAAATAAAAAAAATAAATATAACAACT

***********************************.((((...((((((((((((.((((((....((((((..........))))))....)))))).)))))))))))).)))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 V106

head

 M044

female body

 V055

head

 M058

embryo
..................................................TACTTTGAGTAATGTTTGTATT..................................................................................... 22 0 1 53.00 53 41 8 3 1 0
....................................................................................TACATTCTTTATTCCAAGTAGA................................................... 22 0 1 18.00 18 5 11 2 0 0
..................................................TACTTTGAGTAATGTTTGTAT...................................................................................... 21 0 1 12.00 12 12 0 0 0 0
..................................................TACTTTGAGTAATGTTTGTATTA.................................................................................... 23 1 1 4.00 4 1 3 0 0 0
....................................................................................TACATTCTTTATTCCAAGTAG.................................................... 21 0 1 3.00 3 1 2 0 0 0
..................................................TACTTTGAGTAATGTTTGTATTT.................................................................................... 23 1 1 3.00 3 2 0 0 1 0
..................................................TACTTTGAGTAATGTTTGTATTAAA.................................................................................. 25 2 1 2.00 2 0 2 0 0 0
................................................TCTACTTTGAGTAATGTTTGTATAA.................................................................................... 25 3 1 1.00 1 0 0 0 0 1
..................................................TACTTTGAGTAATGTTTGTATTGA................................................................................... 24 1 1 1.00 1 0 1 0 0 0
..................................................TACTTTGAGTAATGTTTGTAA...................................................................................... 21 1 1 1.00 1 1 0 0 0 0
....................................................................................TACATTCTTTATTCCAAGTAAA................................................... 22 1 1 1.00 1 0 1 0 0 0
..................................................TACTTTGAGTAATGTTTGTAGT..................................................................................... 22 1 1 1.00 1 1 0 0 0 0
....................................................................................TACATTCTTTATTCGAAGTAGA................................................... 22 1 1 1.00 1 0 1 0 0 0
...................................................ACTTTGAGTAATGTTTGTATTG.................................................................................... 22 0 1 1.00 1 1 0 0 0 0
....................................................................................GACATTCTTTATTCCAAGTAGA................................................... 22 1 1 1.00 1 0 0 0 1 0
.......................................................................................ATTCTTTATTCCAAGTAGA................................................... 19 0 1 1.00 1 0 0 0 0 1
..................................................TACTTTGAGTAATATTTGTAT...................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.....................................................................................ACATTCTTTATTCCAAGTAGA................................................... 21 0 1 1.00 1 0 1 0 0 0
.......................TTACAGATTAGTTAGTCTCTT................................................................................................................. 21 3 4 0.25 1 0 0 0 1 0
....................................................TACTGAGTAATGTTTGTAT...................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TTATTTATAGTATTTTTATTTATAATTTATAATGAATCAGAGAAAAGTAAATGAAACTCATTACAAACATAACATAAAAGATTTATGTAAGAAATAAGGTTCATCTACTTCACTAAAAGCTAGTAGTCAACTTTATTTTTTTTATTTATATTGTTGA

************************************.((((...((((((((((((.((((((....((((((..........))))))....)))))).)))))))))))).)))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 V039

embryo

 V055

head
..........................TTAATATGAATCAGAGAAGA............................................................................................................... 20 3 20 0.05 1 0 0 1
..................................................................CCAGAACAGAAAAGATTTAT....................................................................... 20 3 20 0.05 1 1 0 0
..................................................ACGTACCTCATTACAAACA........................................................................................ 19 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_12903:534940-535096 + dan_86 confident AATA----AATATCATAAAAATAAAT---------ATTAAATA------------------------------------TTACTTAGTCTCTTTTCATTTACTTTGAGTAATGTTTGTATTGTAT---TTTCTAAATAC----ATTCTTTATTCCAAGTAGATGA-AGTGATTTTCGAT----CATCAGTTGAAATA---AAAAAAAT--AAATATAACAACT
droBip1 scf7180000395952:2268-2439 - CCTA----GGC----------------------------------ATCTAATAAAATCTTTAAAAAATGTGTACAAATACATATTTTTCTATTTTGGTGTTTTTTGCGTAGGGCA----TAGTACTTTTTTTTAA--AC----ATCTTATATTCAAAATGCATTAAAACGGGCGTTGACTCAGTGTTAGTGT---TAAAAAATATAATAAATATATAAAATTT
droRho1 scf7180000778091:407267-407291 + CAGC----AATATAATAACAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAT--
droTak1 scf7180000415843:978318-978480 - TATTTTTTAACATGATAAGAAAGGCTATTTAATTCTTTTACGAATATTTAATAAAAATATTCAATGCTGCATTTAAAC------------------------------------------CATAT---AGTCTATGTAATCCAAAACTCTAT---------CCCAATTTGGGACCTAATTAAAT---TAGGC---TAATTTATTTATCCAAAACGTAGAATCC
droEre2 scaffold_4690:9432332-9432380 + AAAA----AAA------AAAAGTGGC---------TTTGACCA------------------------------------TTATTTAATCTAGTTTCTCTCAATT-----------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AATA----AATATCATAAAAATAAAT---------ATTAAATA------------------------------------TTACTTAGTCTCTTTTCATTTACTTTGAGTAATGTTTGTATTGTAT---TTTCTAAATAC----ATTCTTTATTCCAAGTAGATGA-AGTGATTTTCGAT----CATCAGTTGAAATA---AAAAAAAT--AAATATAACAACTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................................................................................................TACTTTGAGTAATGTTTGTATT......................................................................................................22153.00533001418
........................................................................................................................................TAC----ATTCTTTATTCCAAGTAGA.............................................................22118.00182000511
...................................................................................................TACTTTGAGTAATGTTTGTAT.......................................................................................................21112.00120000120
...................................................................................................TACTTTGAGTAATGTTTGTATTA.....................................................................................................2314.004000013
........................................................................................................................................TAC----ATTCTTTATTCCAAGTAG..............................................................2113.003000012
...................................................................................................TACTTTGAGTAATGTTTGTATTT.....................................................................................................2313.003000120
...................................................................................................TACTTTGAGTAATGTTTGTATTGA....................................................................................................2411.001000001
...................................................................................................TACTTTGAGTAATGTTTGTAA.......................................................................................................2111.001000010
....................................................................................................ACTTTGAGTAATGTTTGTATTG.....................................................................................................2211.001000010
...............................................................................................................................................ATTCTTTATTCCAAGTAGA.............................................................1911.001010000
.........................................................................................................................................AC----ATTCTTTATTCCAAGTAGA.............................................................2111.001000001
droBip1
CCTA----GGC----------------------------------ATCTAATAAAATCTTTAAAAAATGTGTACAAATACATATTTTTCTATTTTGGTGTTTTTTGCGTAGGGCA----TAGTACTTTTTTTTAA--AC----ATCTTATATTCAAAATGCATTAAAACGGGCGTTGACTCAGTGTTAGTGT---TAAAAAATATAATAAATATATAAAATTTSizeHit CountTotal NormTotal
No Reads
droRho1
CAGC----AATATAATAACAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAT--SizeHit CountTotal NormTotal
No Reads
droTak1
TATTTTTTAACATGATAAGAAAGGCTATTTAATTCTTTTACGAATATTTAATAAAAATATTCAATGCTGCATTTAAAC------------------------------------------CATAT---AGTCTATGTAATCCAAAACTCTAT---------CCCAATTTGGGACCTAATTAAAT---TAGGC---TAATTTATTTATCCAAAACGTAGAATCCSizeHit CountTotal NormTotal
No Reads
droEre2
AAAA----AAA------AAAAGTGGC---------TTTGACCA------------------------------------TTATTTAATCTAGTTTCTCTCAATT-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 10/20/2015 at 11:18 PM