ID:

dan_859

 Coordinate:

scaffold_12935:37776-37926 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.1 -16.0 -16.0

Flybase annnotation

CDS [Dana\GF13858-cds]; exon [dana_GLEANR_13914:2]; intron [Dana\GF13858-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2_DVirRCHelitron-
mature
  1. scaffold_12935:37828-37853 -
  2. scaffold_12966:283459-283484 -
star
  1. scaffold_12935:37900-37926 -
  2. scaffold_12966:166158-166184 +
  3. dan_1051  scaffold_12966:283531-283557 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCTCCTTAAAATGGAAGGAGATATAAAAACTAGGAATAGAGGCATATTCGTAAGTATTAAATATTTGGAAAAAATGTTTTTAATACCCCTTGCAGAGGGTATTATAATTTTGGTCAAAAGTGTGCAACGCAGTGAAGGAGAAATCTTCGACCCCATTAAGTATATATATTCTTGATCAGGATCACCTCCTGATATAAGCATGTCCGTCTGTATGTTTTTACGCAAAATAGTCTCTCAATTTTAAGCGCTG
**************************************************..............(((((..(((((.....((((((((((...)).))))))))..)))))..))))).((((...))))......((((....))))****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body
...........................................................................................................................TGCAACGCAGTGAAGGAGAAATCTTC...................................................................................................... 26 0 2 1.00 2 1 0 1 0
...........................................................................................................................................AGAAATCTTCGACCCCATTAAGTATATA.................................................................................... 28 0 1 1.00 1 0 1 0 0
............TGGAAGGAGATATAAAAACTAGGAAT..................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0
...............................................................................................................................ACGCAGTGAAGGAGAAATCTTCG..................................................................................................... 23 0 2 0.50 1 0 0 1 0
..................................................................................................................................CAGTGAAGGAGAAATCTTCGACCCCA............................................................................................... 26 0 2 0.50 1 0 0 1 0
...............................................................................................................................ACGCAGTGAAGGAGAAATCTTCGACC.................................................................................................. 26 0 2 0.50 1 1 0 0 0
......................TATAAAAACTAGGAATAGAGG................................................................................................................................................................................................................ 21 0 2 0.50 1 1 0 0 0
.......................ATAAAAACTAGGAATAGAGG................................................................................................................................................................................................................ 20 0 2 0.50 1 0 1 0 0
.........................AAAAACTAGGAATAGAGGCATATTC......................................................................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0
......................TATAAAAACTAGGAATAGAGGCATAT........................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
..............................................................................................................................AACGCAGTGAAGGAGAAATCTTCGACC.................................................................................................. 27 0 2 0.50 1 1 0 0 0
.............................................................................TGTTTAATACCCCTTGCAGAG......................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0
...............................................................................................................................ACGCAGTGAAGGAGAAATCTTCGAC................................................................................................... 25 0 2 0.50 1 1 0 0 0
...............................................................................................................................GCGCAGTGAAGGAGAAATCTTCGACC.................................................................................................. 26 1 2 0.50 1 0 0 1 0
.........................................................................GATCTTTTTAATACCCCTTGCAGAG......................................................................................................................................................... 25 2 2 0.50 1 1 0 0 0
.......................................................................................................................................................................................CACCTCCTGATATAAGCATGTCCGTC.......................................... 26 0 4 0.50 2 0 2 0 0
...........................AAACTAGGAATAGAGGCATATTCGTCCA.................................................................................................................................................................................................... 28 3 2 0.50 1 0 1 0 0
...................................................................................................................................AGTGAAGGAGAAATCTTCGACCC................................................................................................. 23 0 3 0.33 1 1 0 0 0
............................................ATATTCGTAAGTATTAAATATTTGGA..................................................................................................................................................................................... 26 0 3 0.33 1 0 1 0 0
..................................................GTAAGTATTAAATATTTGGAAAAAATG.............................................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0
.........................................................................................................TAATTTTGGTCAAAAGTGTGCAACGCAG...................................................................................................................... 28 0 20 0.30 6 0 6 0 0
...................................................................................................................................................................................................TAAGCATGTCCGTCTGTATGTTTT................................ 24 0 4 0.25 1 1 0 0 0
........................................................................................................................................................................................ACCTCCTGATATAAGCATGTCCGTCTGT....................................... 28 0 4 0.25 1 0 1 0 0
.......................................................................................................................................................................................CACCTCCTGATATAAGCATGTCC............................................. 23 0 4 0.25 1 1 0 0 0
..............................................................................................................................................................................................TGATATAAGCATGTCCGTCTGTAT..................................... 24 0 4 0.25 1 1 0 0 0
......................................................................................................................................................................................TCACCTCCTGATATAAGCATGTCCGTC.......................................... 27 0 4 0.25 1 0 1 0 0
...........................................................................................................................................................................................TCCTGATATAAGCATGTCCGTCTGTATGT................................... 29 0 4 0.25 1 1 0 0 0
...........................................................................................................................................................................................TCCTGATATAAGCATGTCCGTCTGTA...................................... 26 0 4 0.25 1 0 1 0 0
...........................................................................................................................................................................................TCCTGATATAAGCATGTCCGTCTG........................................ 24 0 4 0.25 1 0 1 0 0
......................................................................................................................................................................................TCACCTCCTGATATAAGCATG................................................ 21 0 4 0.25 1 0 1 0 0
.......................................................................................................................................................................................CACCTCCTGATATAAGCATGTCCGT........................................... 25 0 4 0.25 1 0 1 0 0
..........................................................................................................AATTTTGGTCAAAAGTGTGCA............................................................................................................................ 21 0 20 0.20 4 0 4 0 0
.................................................................................................................................................................................................TATAAGCATGTCCGTCTGTATGTT.................................. 24 0 5 0.20 1 1 0 0 0
.............................................................................................................................CAACGCAGCGAAGGAGGAATCTTCGA.................................................................................................... 26 2 5 0.20 1 0 0 1 0
......................................................................AAAAATGTTTTTAATACCCCTTGC............................................................................................................................................................. 24 0 5 0.20 1 1 0 0 0
.........................................................................AATGTTTTTAATACCCCTTGC............................................................................................................................................................. 21 0 5 0.20 1 1 0 0 0
...CCCTTAAAATGGATGGAGAT.................................................................................................................................................................................................................................... 20 2 5 0.20 1 0 0 0 1
.........................................................................................................................................................................................................TGTCCGTCTGTATGTTTTTACGCAAA........................ 26 0 6 0.17 1 0 1 0 0
........................................................................................................................................................................................................................TTTTACGCAAAATAGTCTCTCAATTTT........ 27 0 6 0.17 1 1 0 0 0
.....................................................................................................................................TTAAGGAGAAATCTTCGACC.................................................................................................. 20 1 6 0.17 1 1 0 0 0
.......................................................................................................................................................................................................................TTTTTACGCAAAATAGTCTCTCAATT.......... 26 0 6 0.17 1 1 0 0 0
.......................................................................................................................AGTGTGCAACGCAGTGAAGGAG.............................................................................................................. 22 0 20 0.15 3 3 0 0 0
...................................................................................................................................................................................................TAAGCATGTCCGTCTGTATG.................................... 20 0 7 0.14 1 0 1 0 0
.........................................................................................................................................................................TTCTTGATCAGGATCACCTCCTGAT......................................................... 25 0 15 0.13 2 1 1 0 0
...............................................................................................................................ACGTAGTGAAGGAGAAATCTTCGAC................................................................................................... 25 1 8 0.13 1 1 0 0 0
...........................AAACTAGGATTAAAGGCA.............................................................................................................................................................................................................. 18 2 9 0.11 1 1 0 0 0
......................................................................................................................AAGTGTGCAACGCAGTGAAGGAGAA............................................................................................................ 25 0 20 0.10 2 2 0 0 0
...............................................................ATTTGGAAAAGATGTTTT.......................................................................................................................................................................... 18 1 10 0.10 1 0 0 1 0
...................................................................................................................................AGTGAAGGTGGAATCTTAGAC................................................................................................... 21 3 17 0.06 1 1 0 0 0
.......................................................................................................................ATTGTGCAACGCAGTGAAGGAGAAATC......................................................................................................... 27 1 20 0.05 1 1 0 0 0
.....................................................................................................ATTATAATTTTGGTCAAAAGTGTGC............................................................................................................................. 25 0 20 0.05 1 0 1 0 0
....................................................................GAAAACATCTGTTTAATACC................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0
......................................................................................................................AAGTGTGCAACGCAGTGAAGGAGAAAT.......................................................................................................... 27 0 20 0.05 1 0 1 0 0
...........................AAACTAGGATTAGAGACAAA............................................................................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

TCGAGGAATTTTACCTTCCTCTATATTTTTGATCCTTATCTCCGTATAAGCATTCATAATTTATAAACCTTTTTTACAAAAATTATGGGGAACGTCTCCCATAATATTAAAACCAGTTTTCACACGTTGCGTCACTTCCTCTTTAGAAGCTGGGGTAATTCATATATATAAGAACTAGTCCTAGTGGAGGACTATATTCGTACAGGCAGACATACAAAAATGCGTTTTATCAGAGAGTTAAAATTCGCGAC
******************************************************************************************************..............(((((..(((((.....((((((((((...)).))))))))..)))))..))))).((((...))))......((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body		 V106
head
.................................CCTTATCTCCGTATAAGCATTCATAAT............................................................................................................................................................................................... 27 0 2 37.00 74 69 5 0 0 0
..............................................................................................................................................TTAGAAGCTGGGGTAATTCATATAT.................................................................................... 25 0 1 16.00 16 13 2 1 0 0
............................................................................................................................................CTTTAGAAGCTGGGGTAATTCATATAT.................................................................................... 27 0 1 12.00 12 8 2 2 0 0
.............................................................................................................................................TTTAGAAGCTGGGGTAATTCATATAT.................................................................................... 26 0 1 11.00 11 8 3 0 0 0
.............................TGATCCTTATCTCCGTATAAGCATTCAT.................................................................................................................................................................................................. 28 0 2 8.00 16 9 4 3 0 0
...................................................................................................................................................................................CCTAGTGGAGGACTATATTCGTAC................................................ 24 0 1 6.00 6 5 0 1 0 0
...................................................................................................................................................................................................................ATACAAAAATGCGTTTTATCAGAGAGT............. 27 0 5 5.00 25 21 3 0 1 0
...........................................................................................................................................................................................................AGGCAGACATACAAAAATGCGTTTTAT..................... 27 0 5 4.80 24 18 4 2 0 0
............................TTGATCCTTATCTCCGTATAAGCATT..................................................................................................................................................................................................... 26 0 2 4.00 8 7 1 0 0 0
............................................................................................................................CGTTGCGTCACTTCCTCTTTAGAAGCT.................................................................................................... 27 0 2 4.00 8 5 2 1 0 0
................................................................................................................................................AGAAGCTGGGGTAATTCATATATAT.................................................................................. 25 0 4 3.75 15 9 5 1 0 0
.............................TGATCCTTATCTCCGTATAAGCATT..................................................................................................................................................................................................... 25 0 2 3.50 7 5 0 2 0 0
...........................TTTGATCCTTATCTCCGTATAAGCATT..................................................................................................................................................................................................... 27 0 2 3.50 7 5 1 1 0 0
.........................................................................................................................................................................................GGAGGACTATATTCGTACAGGCAGACAT...................................... 28 0 4 3.25 13 4 8 1 0 0
..............................................................................................................................................TTAGAAGCTGGGGTAATTCATATGT.................................................................................... 25 1 1 3.00 3 3 0 0 0 0
..............................................................................................................................................TTAGAAGCTGGGGTAATTCATTTAT.................................................................................... 25 1 1 3.00 3 3 0 0 0 0
..............................................................................................................................................TTAGAAGCTGGGGTAATTCATATATA................................................................................... 26 0 1 3.00 3 2 1 0 0 0
.........TTTACCTTCCTCTATATTTTTGAT.......................................................................................................................................................................................................................... 24 0 1 3.00 3 2 0 1 0 0
....................CTATATTTTTGATCCTTATCTCCGTAT............................................................................................................................................................................................................ 27 0 2 3.00 6 5 0 1 0 0
..........................TTTTGATCCTTATCTCCGTATAAGCATT..................................................................................................................................................................................................... 28 0 2 2.50 5 1 4 0 0 0
.......................................................................................................................................................GGGGTAATTCATATATATAAGAACTAGT........................................................................ 28 0 6 2.50 15 10 5 0 0 0
...............................ATCCTTATCTCCGTATAAGCATTCATAAT............................................................................................................................................................................................... 29 0 2 2.50 5 3 2 0 0 0
.....................................................................................................................................................................................................................ACAAAAATGCGTTTTATCAGAGAGT............. 25 0 5 2.20 11 4 2 3 1 1
.................................CCTTATCTCCGTATAAGCATTCATAGT............................................................................................................................................................................................... 27 1 2 2.00 4 4 0 0 0 0
..............................................................................................................................................TTAGAAGCTGGGGTAATTCATACAT.................................................................................... 25 1 1 2.00 2 2 0 0 0 0
..............................................................................................................................................TTAGAAGCTGGGGTAATTCATATATAT.................................................................................. 27 0 1 2.00 2 2 0 0 0 0
...................................................................................................................................................................................CCTAGTGGAGGACTATATTCGT.................................................. 22 0 1 2.00 2 1 1 0 0 0
..................................................................................................................................................................................TCCTAGTGGAGGACTATATTCGTAC................................................ 25 0 1 2.00 2 1 1 0 0 0
................................................................................................................................................AGAAGCTGGGGTAATTCATATAT.................................................................................... 23 0 4 2.00 8 4 2 2 0 0
..................................CTTATCTCCGTATAAGCATTCATAAT............................................................................................................................................................................................... 26 0 3 2.00 6 5 1 0 0 0
................................CCCTTATCTCCGTATAAGCATTCATAAT............................................................................................................................................................................................... 28 1 2 2.00 4 4 0 0 0 0
...................................................................................................................................................................................CCTAGTGGAGGACTATATTCGCAC................................................ 24 1 1 2.00 2 2 0 0 0 0
............................TTGATCCTTATCTCCGTATAAGCAT...................................................................................................................................................................................................... 25 0 2 2.00 4 4 0 0 0 0
.CGAGGAATTTTACCTTCCTCTATATTT............................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0
...................................................................................................................................................................................CCTAGTGGAGGACTATATTCGTACAG.............................................. 26 0 1 2.00 2 2 0 0 0 0
..............CTTCCTCTATATTTTTGATCCTTATCT.................................................................................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0
.....GAATTTTACCTTCCTCTATATTTTT............................................................................................................................................................................................................................. 25 0 1 2.00 2 1 0 1 0 0
...................................................................................................................................................................................CCTAGTGGAGGACTATATTCG................................................... 21 0 1 2.00 2 1 1 0 0 0
...................................TTATCTCCGTATAAGCATTCATAAT............................................................................................................................................................................................... 25 0 3 1.67 5 3 1 1 0 0
....................................TATCTCCGTATAAGCATTCATAAT............................................................................................................................................................................................... 24 0 3 1.67 5 4 1 0 0 0
.................................CCTTATCTCCGTATAAGCATTCATA................................................................................................................................................................................................. 25 0 5 1.60 8 7 1 0 0 0
......................................................................................................................................................................................................CGTACAGGCAGACATACAAAAATGCGT.......................... 27 0 4 1.50 6 2 4 0 0 0
.................................CCTTATCTCCGTATAAGCATTCATAATT.............................................................................................................................................................................................. 28 0 2 1.50 3 3 0 0 0 0
..........................TTTTGATCCTTATCTCCGTATAAGCAT...................................................................................................................................................................................................... 27 0 2 1.50 3 1 2 0 0 0
............................................................................................................................CGTTGCGTCACTTCCTCTTTAGAAG...................................................................................................... 25 0 2 1.50 3 2 0 1 0 0
............................................................................................................................................................................................GGACTATATTCGTACAGGCAGACAT...................................... 25 0 4 1.50 6 4 1 1 0 0
...........................................................................................................................ACGTTGCGTCACTTCCTCTTTAGAAGCT.................................................................................................... 28 0 2 1.50 3 0 3 0 0 0
...................................................................................................................................................................................................................ATACAAAAATGCGTTTTATCAGAGATT............. 27 1 5 1.40 7 7 0 0 0 0
.................................CCTTATCTCCGTATAAGCATTCAT.................................................................................................................................................................................................. 24 0 5 1.40 7 6 0 1 0 0
.......................................................................................................................................................................................................................AAAAATGCGTTTTATCAGAGAGTTAA.......... 26 0 6 1.33 8 8 0 0 0 0
.........................................................................................................................................................................................GGAGGACTATATTCGTACAGGCAGAC........................................ 26 0 4 1.25 5 2 3 0 0 0
.....................................................................................................................................................CTGGGGTAATTCATATATATAAGAACT........................................................................... 27 0 4 1.25 5 3 1 1 0 0
........................................................................................................................................................................................TGGAGGACTATATTCGTACAGGCAG.......................................... 25 0 4 1.25 5 4 1 0 0 0
...............................................................................................................................................TAGAAGCTGGGGTAATTCATATATA................................................................................... 25 0 4 1.25 5 4 0 1 0 0
...........................................................................................................................................................................................AGGACTATATTCGTACAGGCAGACAT...................................... 26 0 4 1.25 5 4 0 1 0 0
...................................................................................TATGGGGAACGTCTCCCATAATATT............................................................................................................................................... 25 0 5 1.20 6 4 2 0 0 0
...............................ATCCTTATCTCCGTATAAGCATTCAT.................................................................................................................................................................................................. 26 0 5 1.20 6 3 3 0 0 0
............................................................................................................................................................................................................GGCAGACATACAAAAATGCGTTTTAT..................... 26 0 5 1.20 6 5 1 0 0 0
.................................................................................................CCCATAATATTAAAACCAGTTTTCACA............................................................................................................................... 27 0 20 1.05 21 21 0 0 0 0
.................................CCTTATCTCCGTATAAGCATTCAAAAT............................................................................................................................................................................................... 27 1 2 1.00 2 2 0 0 0 0
.....................................................................................................................................................................................................TCGTACAGGCAGACATACAAAAATGCGT.......................... 28 0 4 1.00 4 1 3 0 0 0
...................................................................................................................................CCACTTCCTCTTTAGAAGCTGGGGT............................................................................................... 25 1 2 1.00 2 2 0 0 0 0
....GGAATTTTACCTTCCTCTATATTTTT............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................TAGAAGCTGGGGTAATTCATATAT.................................................................................... 24 0 4 1.00 4 4 0 0 0 0
.CGAGGAATTTTACCTTCCTCTATATTTT.............................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
........................................................................................................................CACACGTTGCGTCACTTCCTCTTTTGAA....................................................................................................... 28 1 1 1.00 1 1 0 0 0 0
..........TTACCTTCCTCTATATTTTTGATCCTTAT.................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
TCGAGGAATTTTACCTTCCTCTATATTT............................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................GTCCTAGTGGAGGACTATATTCGTAC................................................ 26 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................CCTAGTGGAGGACTATATT..................................................... 19 0 2 1.00 2 1 1 0 0 0
................................................................................................................................................................................AGTCCTAGTGGAGGACTATATTCGTA................................................. 26 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................CTAGTGGAGGACTATATTCGTAC................................................ 23 0 4 1.00 4 2 0 2 0 0
CCGAGGAATTTTACCTTCCTCTATATTT............................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0
................................................................................................................................GCGTCACTTCCTCTTTAGAAG...................................................................................................... 21 0 2 1.00 2 0 2 0 0 0
......................................................................TTTTTACAAAAATTATGGGGAACGTCT.......................................................................................................................................................... 27 0 2 1.00 2 2 0 0 0 0
..............CTTCCTCTATAGTTTTGATCCTTATCT.................................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0
...........................................................................................................................................TCTTTAGAAGCTGGGGTAATTCATATAT.................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................TTAGAAGCTGGGGTCATTCATATAT.................................................................................... 25 1 1 1.00 1 1 0 0 0 0
...........................CTTGATCCTTATCTCCGTATAAGCATT..................................................................................................................................................................................................... 27 1 2 1.00 2 2 0 0 0 0
..............................................................................................................................................TTAGAAGCTGGGGTAAGTCATATAT.................................................................................... 25 1 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................CCTAGTGGAGGACTATATTCGTA................................................. 23 0 1 1.00 1 0 1 0 0 0
....................................TATCTCCGTATAAGCATTCATAATTTAT........................................................................................................................................................................................... 28 0 3 1.00 3 3 0 0 0 0
................................................................................................................................................................................AGTCCTAGTGGAGGACTATATTCGGA................................................. 26 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................GTCCTAGTGGAGGACTATATTCGTAAAG.............................................. 28 1 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................CCTAGTGGAGGACTATATTCGTGC................................................ 24 1 1 1.00 1 1 0 0 0 0
.............................CGATCCTTATCTCCGTATAAGCATTCAT.................................................................................................................................................................................................. 28 1 2 1.00 2 2 0 0 0 0
..................................................................................................................................................................................TCCTAGTGGAGGACTATATTCGTACA............................................... 26 0 1 1.00 1 0 1 0 0 0
..............................................................................................................................................TTAGAAGCTGGGGTAATTCATGTATA................................................................................... 26 1 1 1.00 1 1 0 0 0 0
............................TTGATCCTTATCTCCGTATAAGCATTCAT.................................................................................................................................................................................................. 29 0 2 1.00 2 1 1 0 0 0
..................................................................................................................................................................................TCCTAGTGGAGGACTATATTCG................................................... 22 0 1 1.00 1 0 1 0 0 0
.........TTTACCTTCCTCTATATTTTTGATCCT....................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................CTGGGGTAATTCATATATATAAGAAC............................................................................ 26 0 4 1.00 4 4 0 0 0 0
..................................................................................................................................................................................TCCTAGTGGAGGACTATATTCGTA................................................. 24 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................CTCTTTAGAAGCTGGGGTAATTCATATAT.................................................................................... 29 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................TTTAGAAGCTGGGGTAATTCATATATA................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.........TTTACCTTCCTCTATCTTTTTGAT.......................................................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................CCTAGTGGAGGACTATATTCGTACA............................................... 25 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................GTTGCGTCACTTCCTCTTTAGAAGCT.................................................................................................... 26 0 2 1.00 2 1 1 0 0 0
....................................................................................................................................CACTTCCTCTTTAGAAGCTGGGGTAAT............................................................................................ 27 0 2 1.00 2 1 1 0 0 0
..........TTACCTTCCTCTATATTTTTGA........................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................TTAGACGCTGGGGTAATTCATATATAT.................................................................................. 27 1 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................CCTAGTGGAGTACTATATTCGTAC................................................ 24 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................................GGGTAATTCATATATATAAGAACTAGT........................................................................ 27 0 6 0.83 5 4 1 0 0 0
................................................................................................................................................AGAAGCTGGGGTAATTCATATATA................................................................................... 24 0 4 0.75 3 2 1 0 0 0
...............................................................................................................................................TAGAAGCTGGGGTAATTCATATATAT.................................................................................. 26 0 4 0.75 3 2 1 0 0 0
..........................................................................................................................................................................................GAGGACTATATTCGTACAGGCAGACAT...................................... 27 0 4 0.75 3 2 1 0 0 0
...................................................................................................................................................................................................ATTCGTACAGGCAGACATACAAAAAT.............................. 26 0 4 0.75 3 2 1 0 0 0
.........................................................................................................................................................................................................ACAGGCAGACATACAAAAATGCGTTTT....................... 27 0 4 0.75 3 1 2 0 0 0
..................................................................................TTATGGGGAACGTCTCCCATAATATT............................................................................................................................................... 26 0 3 0.67 2 2 0 0 0 0
.........................................CCGTATAAGCATTCATAATTTAT........................................................................................................................................................................................... 23 0 3 0.67 2 2 0 0 0 0
.........................................CCGTATAAGCATTCATAATTTATAAACCT..................................................................................................................................................................................... 29 0 3 0.67 2 2 0 0 0 0
.......................................................................................................................................................................................................................AAAAATGCGTTTTATCAGAGAGTTA........... 25 0 6 0.67 4 2 2 0 0 0
......................................................................................................................................................TGGGGTAATTCATATATATAAGAAC............................................................................ 25 0 5 0.60 3 3 0 0 0 0
.....................................................................................................................................................................................................................ACAAAAATGCGTTTTATCAGAGAGTT............ 26 0 5 0.60 3 2 1 0 0 0
................................TCCTTATCTCCGTATAAGCATTCAT.................................................................................................................................................................................................. 25 0 5 0.60 3 2 1 0 0 0
......................................................................................................................................................................................................................CAAAAATGCGTTTTATCAGAGAGT............. 24 0 5 0.60 3 3 0 0 0 0
....................................................................................................................................................................................................................TACAAAAATGCGTTTTATCAGAGAGT............. 26 0 5 0.60 3 1 1 1 0 0
......................................................................................................................................................TGGGGTAATTCATATATATAAGAACT........................................................................... 26 0 5 0.60 3 3 0 0 0 0
...........................................................................................................................................................................................................................ATGCGTTTTATCAGAGAGTTAAAAT....... 25 0 7 0.57 4 4 0 0 0 0
.......................................................................................................................TCACACGTTGCGTCACTTCCTCTTT........................................................................................................... 25 0 20 0.50 10 8 2 0 0 0
..............................................................................................................................TTGCGTCACTTCCTCTTTAGAA....................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
.................................CCTTATCTCCGTATAAGCATTCTTAAT............................................................................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
..............................GATCCTTATCTCCGTATAAGCATTCAT.................................................................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0
............................................................................................................................CGTTGCGTCACTTCCTCTTTAGAA....................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
............................................................................................................................CGTTGCGTCACTTCCTCTTTAGAAGC..................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
.................................CCTTATCTCCGTATAAGCATTCATAATTT............................................................................................................................................................................................. 29 0 2 0.50 1 1 0 0 0 0
.............................TGATCCTTATCTCCGTATAAGCATTC.................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................TCCTCTTTAGAAGCTGGGGTAATTCGT........................................................................................ 27 1 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................GTACAGGCAGACATACAAAAATGCGT.......................... 26 0 6 0.50 3 0 3 0 0 0
.................................CCTTATCTCCGTATAAGCATTCACAAT............................................................................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................................CGTACAGGCAGACATACAAAAATGC............................ 25 0 4 0.50 2 2 0 0 0 0
.................................................................................................................................CGTCACTTCCTCTTTAGAAGCTGGGGT............................................................................................... 27 0 2 0.50 1 1 0 0 0 0
.................................CCTTATCTCCGTATCAGCATTCATAAT............................................................................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................GGAGGACTATATTCGTACAGGCAG.......................................... 24 0 4 0.50 2 0 2 0 0 0
..............................................................................................................................................CTAGAAGCTGGGGTAATTCATATAT.................................................................................... 25 1 4 0.50 2 2 0 0 0 0
....................CTATATTTTTGATCCTTATCTCCGTTT............................................................................................................................................................................................................ 27 1 2 0.50 1 1 0 0 0 0
............................TTGATCCTTATCTCCGTATAAGTATT..................................................................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0
.................................CCTAATCTCCGTATAAGCATTCATAAT............................................................................................................................................................................................... 27 1 2 0.50 1 0 1 0 0 0
...............................................................................................................................TGCGTCACTTCCTCTTTAGAAGCT.................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................................AGCTGGGGTAATTCATATATATAAGAAC............................................................................ 28 0 4 0.50 2 1 1 0 0 0
.................................CCTTATCTCCGGATAAGCATTCATAATT.............................................................................................................................................................................................. 28 1 2 0.50 1 1 0 0 0 0
...............................................................................................................................................CAGAAGCTGGGGTAATTCATATAT.................................................................................... 24 1 4 0.50 2 2 0 0 0 0
.........................................................................................................................................................................................GGAGGACTATATTCGTACAGGCAGA......................................... 25 0 4 0.50 2 1 1 0 0 0
............................................................................................................................................CTTTAGAAGCTGGGGTAATTCATATAGC................................................................................... 28 2 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................................CGTACAGGCAGACATACAAAAATGCTT.......................... 27 1 4 0.50 2 2 0 0 0 0
.................................CCTTATCTCCGCATAAGCATTCATAAT............................................................................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
.................CCTCTATATTTTTGATCCTTATCTCC................................................................................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0
................................TCCCTATCTCCGTATAAGCATTCATAAT............................................................................................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................AGTGGAGGACTATATTCGTACAGGCAG.......................................... 27 0 4 0.50 2 1 1 0 0 0
.........................................................................................................................................................GGTAATTCATATATATAAGAACTAGTC....................................................................... 27 0 2 0.50 1 1 0 0 0 0
.................................CCTTATCTCCGTATAAGCATTCATATT............................................................................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................................TGACTATATTCGTACAGGCAGACAT...................................... 25 1 4 0.50 2 1 1 0 0 0
....................................................................................................................................................................................CTAGTGGAGGACTATATTCGT.................................................. 21 0 4 0.50 2 1 0 1 0 0
............................................................................................................................................CTTTAGAAGCTGGGGTAATTA.......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
...............................................................................AAATTATGGGGAACGTCTCCCATAATATT............................................................................................................................................... 29 0 2 0.50 1 0 1 0 0 0
.........................................................................................................................................CCTCTTTAGAAGCTGGGGTAAT............................................................................................ 22 0 2 0.50 1 1 0 0 0 0
................TCCTCTATATTTTTGATCCTTATCTCC................................................................................................................................................................................................................ 27 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................GTCACTTCCTCTTTAGAAGCTGGGGT............................................................................................... 26 0 2 0.50 1 1 0 0 0 0
..................CTCTATATTTTTGATCCTTATCTCCGTAT............................................................................................................................................................................................................ 29 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................TCACTTCCTCTTTAGAAGCTGGGGT............................................................................................... 25 0 2 0.50 1 0 1 0 0 0
........................................................................................................................................................................................TGGAGGACTATATTCGTACAGGCAGAC........................................ 27 0 4 0.50 2 0 2 0 0 0
.........................................................................................................................................................................................................ACAGGCAGACATACAAAAATGCGTTT........................ 26 0 6 0.50 3 3 0 0 0 0
....................................................................................................................................................................................CTAGTGGAGGACTATATTCGTA................................................. 22 0 4 0.50 2 1 0 1 0 0
.........................................................................................................................................................................................................ACAGGCAGACATACAAAAATGCGTTTTAT..................... 29 0 4 0.50 2 1 1 0 0 0
..............................GATCCTTATCTCCGTATACGCATTCAT.................................................................................................................................................................................................. 27 1 2 0.50 1 0 1 0 0 0
..............................................................................................................................................TTAGAAGCTGGGGTAATTCATAT...................................................................................... 23 0 2 0.50 1 0 1 0 0 0
...................................................................................................................................................................................CCTAGTGGAGGACTATAT...................................................... 18 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................TTAGAAGCTGGGGTAATTCATATA..................................................................................... 24 0 2 0.50 1 0 1 0 0 0
.............................TGATCCTTATCTCCGTATAAGCATTCAGA................................................................................................................................................................................................. 29 1 2 0.50 1 1 0 0 0 0
.................................................................................................................................................GAAGCTGGGGTAATTCATATATAT.................................................................................. 24 0 4 0.50 2 2 0 0 0 0
.......................TATTTTTGATCCTTATCTCCGTAT............................................................................................................................................................................................................ 24 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................ACGTTGCGTCACTTCCTCTTTAGAA....................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................TTCCTCTTTAGAAGCTGGGGTAATTCAT........................................................................................ 28 0 2 0.50 1 0 1 0 0 0
.................................CCTTATCTCCGTATAACCATTCATAGT............................................................................................................................................................................................... 27 2 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................GGGGTAATTCATATATATAAGAACT........................................................................... 25 0 6 0.50 3 3 0 0 0 0
...........................TTTGATCCTTATCTCCGTATAAGAAT...................................................................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0
....................CTATATTTTTGATCCTTATCTCCGTATA........................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................................CAGGCAGACATACAAAAATGCGTTTTAT..................... 28 0 4 0.50 2 1 1 0 0 0
.........................................................................................................................................CCTCTTTAGAAGCTGGGGTAA............................................................................................. 21 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................................................AAATGCGTTTTATCAGAGAGTTAAAAT....... 27 0 6 0.50 3 3 0 0 0 0
....................................................................................................................................CACTTCCTCTTTAGAAGCTGGGGTAATT........................................................................................... 28 0 2 0.50 1 0 1 0 0 0
..........CTACCTTCCTCTATATTTTTTA........................................................................................................................................................................................................................... 22 2 2 0.50 1 1 0 0 0 0
.............................................................................................................................................TTTAGAAGCTGGGGTAATTCATATA..................................................................................... 25 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................CCTCTTTAGAAGCTGGGGTAATTAAT........................................................................................ 26 1 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................................................AGGCAGACATACAAAAATGCGTTTTA...................... 26 0 5 0.40 2 2 0 0 0 0
.....................................................................................................................................................CTGGGGTAATTCATATATATAAGAAGT........................................................................... 27 1 5 0.40 2 2 0 0 0 0
.............................................................................................................................................................................................................GCAGACATACAAAAATGCGTTTTAT..................... 25 0 5 0.40 2 2 0 0 0 0
.................................CCTTATCTCCGTATAAGCATTCA................................................................................................................................................................................................... 23 0 5 0.40 2 2 0 0 0 0
...................................................................................................................................................................................................................ATACAAAAATGCGTTTTATCAGAGAGTT............ 28 0 5 0.40 2 2 0 0 0 0
......................................................................................................................................................................................................................CAAAAATGCGTTTTATCAGAGATT............. 24 1 5 0.40 2 2 0 0 0 0
...................................................................................................................................................................................................................ATACAAAAATGCGTTTTATCAGAGACTT............ 28 1 5 0.40 2 2 0 0 0 0
.......................................................................................................................................................GGGGTAATTCATATATATAAGA.............................................................................. 22 0 6 0.33 2 2 0 0 0 0
....................................TATCTCCGTATAAGCATTCATAATTT............................................................................................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0
.................................................................................ATTATGGGGAACGTCTCCCATAATCTAG.............................................................................................................................................. 28 3 3 0.33 1 1 0 0 0 0
......................................TCTCCGTATAAGCATTCATAAT............................................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0
.....................................................TCATAATTTATAAACCTTTTTTACA............................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0
............................................TATAAGCATTCATAATTTATAAACCTT.................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
.....................................................TCATAATTTATAAACCTTTTTTACAAA........................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
........................................TCCGTATAAGCATTCATAATT.............................................................................................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................................................................TTATCAGAGAGTTAAAATTCGCGAC 25 0 6 0.33 2 2 0 0 0 0
.......................................CTCCGTATAAGCATTCATAATTTAT........................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0
........................................TCCGTATAAGCATTCATAAT............................................................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0
........................................TCCGTATAAGCATTCATAATTTATA.......................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0
....................................CATCTCCGTATAAGCATTCATAATTT............................................................................................................................................................................................. 26 1 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................................................AAAAATGCGTTTTATCAGAGAGTTAAA......... 27 0 6 0.33 2 1 0 1 0 0
..........................................................................................................................................................................................................CAGGCAGACATACAAAAATGCGTTT........................ 25 0 6 0.33 2 2 0 0 0 0
.....................................................................................................................................ACTTCCTCTTTAGAAGCTGGG................................................................................................. 21 0 3 0.33 1 0 1 0 0 0
.................................................................................ATTATGGGGAACGTCTCCCATAATATT............................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
........................................................................................................................................................................................................TACAGGCAGACATACAAAAATGCGTTT........................ 27 0 6 0.33 2 2 0 0 0 0
........................................................................................................................CACACGTTGCGTCACTTCCTC.............................................................................................................. 21 0 20 0.30 6 6 0 0 0 0
......................................................................................................................................................CGGGGTAATTCATATATATAAGAACT........................................................................... 26 1 7 0.29 2 2 0 0 0 0
...........................................................................................................................................................................................................AGGCAGACATACAAAAATGCGTTT........................ 24 0 7 0.29 2 2 0 0 0 0
............................................................................................................................................................................................GGACTATATTCGTACCGGCAGACATACA................................... 28 1 4 0.25 1 1 0 0 0 0
...............................................................................................................................................TAGAAGCTTGGGTAATTCATATATAT.................................................................................. 26 1 4 0.25 1 1 0 0 0 0
..........................................................................................................................................................................................GAGGACTATATTCGTACAGGCAGACATAC.................................... 29 0 4 0.25 1 0 1 0 0 0
..........................................................................................................................................................................................................CAGGCAGACATACAAAAATGCGCTTT....................... 26 1 4 0.25 1 1 0 0 0 0
.................................................................................................................................................................................................ATATTCGTACAGGCAGACATACAAAA................................ 26 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................................GGAGGACTATATTAGTACATGCAGAC........................................ 26 2 4 0.25 1 1 0 0 0 0
.................................................................................................................................................GAAGCTGGGGTAATTCATTTATAT.................................................................................. 24 1 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................CTGGGGTAATTCATATATATAAGAA............................................................................. 25 0 4 0.25 1 1 0 0 0 0
..........................................................................................................................................................................................TAGGACTATATTCGTACAGGCAGACAT...................................... 27 1 4 0.25 1 0 0 1 0 0
....................................................................................................................................................................................................TTCGTACAGGCAGACATACAAAAAT.............................. 25 0 4 0.25 1 0 1 0 0 0
..................................................................................................................................................AAGCTGGGGTAATTCATATATA................................................................................... 22 0 4 0.25 1 1 0 0 0 0
...............................................................................................................................................TAGAAGCTGGGGTCATTCATATATAT.................................................................................. 26 1 4 0.25 1 1 0 0 0 0
...........................................................................................................................................................................................AGGACTATATTCGTACAGGCAGACATAC.................................... 28 0 4 0.25 1 1 0 0 0 0
........................................................................................................................................................................................TGGAGGACTATATTCGTACAGGCAGA......................................... 26 0 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................................................ATCGTACAGGCAGACATACAAAAATGCG........................... 28 1 4 0.25 1 0 1 0 0 0
......................................................................................................................................................................................................CGTACAGGCAGACATACAAAAATGCG........................... 26 0 4 0.25 1 0 1 0 0 0
..................................................................................................................................................AAGCTGGGGTAATTCATATATATAAGA.............................................................................. 27 0 4 0.25 1 0 1 0 0 0
.............................................................................................................................................................................................GACTATATTCGTACAGGCAGACAT...................................... 24 0 4 0.25 1 1 0 0 0 0
..........................................................................................................................................................................................GAGGACTATATTCGTACAGGCAGACA....................................... 26 0 4 0.25 1 0 1 0 0 0
...............................................................................................................................................TAGAAGCTGGGGTAAATCATATAT.................................................................................... 24 1 4 0.25 1 0 1 0 0 0
........................................................................................................................................................................................TGGAGGTCTATATTCGTACAGGCAG.......................................... 25 1 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................................................ACAGGCAGACATACAAAAATGCGTTTTAG..................... 29 1 4 0.25 1 1 0 0 0 0
..................................................................................................................................................AAGCTGGGGTAATTCATATATATAAG............................................................................... 26 0 4 0.25 1 0 1 0 0 0
...............................................................................................................................................CAGAAGCTGGGGTAATTCATATATA................................................................................... 25 1 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................................GGAGGACTATATTCGTAAAGGCAGAC........................................ 26 1 4 0.25 1 0 1 0 0 0
...............................................................................................................................................CAGAAGCTGGGGTAATTCATATATATAA................................................................................ 28 1 4 0.25 1 1 0 0 0 0
..........................................................................................................................................................................................................CAGGCAGACATACAAAAATGCGTTTT....................... 26 0 4 0.25 1 1 0 0 0 0
........................................................................................................................................................................................CGGAGGACTATATTCGTACAGGCA........................................... 24 1 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................................................TAGTGGAGGACTATATTCGT.................................................. 20 0 4 0.25 1 0 1 0 0 0
..................................................................................................................................................AAGCTGGGGTAATTCATATAT.................................................................................... 21 0 4 0.25 1 0 0 1 0 0
.................................................................................................................................................GCAGCTGGGGTAATTCATATATAT.................................................................................. 24 1 4 0.25 1 0 0 1 0 0
......................................................................................................................................................................................AGTGGAGGACTATATTCGTACAGGC............................................ 25 0 4 0.25 1 1 0 0 0 0
................................................................................................................................................TGAAGCTGGGGTAATTCATATATA................................................................................... 24 1 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................................................................TCGTACAGGCAGACATACAAAAAT.............................. 24 0 4 0.25 1 1 0 0 0 0
................................................................................................................................................AGAAGCTGGGGTAATTCATATATATAA................................................................................ 27 0 4 0.25 1 0 1 0 0 0
................................................................................................................................................TGAAGCTGGGGTAATTCATATATAT.................................................................................. 25 1 4 0.25 1 1 0 0 0 0
............................................................................................................................................................................................GGACTATATTCGTACAGGCAGACATA..................................... 26 0 4 0.25 1 0 0 1 0 0
...............................................................................................................................................TAGAAGCTGGGGTAATTCATATGT.................................................................................... 24 1 4 0.25 1 1 0 0 0 0
....................................................................................................................................................GCTGGGGTAATTCATATATATAAGA.............................................................................. 25 0 4 0.25 1 0 1 0 0 0
.....................................................................................................................................................................................CAGTGGAGGACTATATTCGTA................................................. 21 1 4 0.25 1 1 0 0 0 0
.....................................................................................................................TTTCACACGTTGCGTCACTTCCTCTTT........................................................................................................... 27 0 20 0.25 5 3 2 0 0 0
......................................................................................................................................................................................................CGTACAGGCAGACATACAAAAATTC............................ 25 1 4 0.25 1 1 0 0 0 0
..............................................................................................................................................................................................ACTATATTCGTACAGGCAGACATA..................................... 24 0 4 0.25 1 1 0 0 0 0
...............................................................................................................................................TAGAAGCTGGGGTAATTCATATATATAA................................................................................ 28 0 4 0.25 1 0 1 0 0 0
..........................................................................................................................................................................................................CAGGCAGAGATACAAAAATGCGTTTT....................... 26 1 4 0.25 1 0 1 0 0 0
........................................................................................................................................................................................................TACAGGCAGACATACAAAAATGCGTTTT....................... 28 0 4 0.25 1 0 1 0 0 0
....................................................................................................................................................................................................TTCGTACAGGCAGACATACAAAAATGC............................ 27 0 4 0.25 1 1 0 0 0 0
...............................................................................................................................................TAGCAGCTGGGGTAATTCATATATA................................................................................... 25 1 4 0.25 1 1 0 0 0 0
..............................................................................................................................................................................................ACTATATTCGTACAGGCAGACATACAAA................................. 28 0 4 0.25 1 1 0 0 0 0
...............................................................................................................................................TAGAAGCTGGGGTCATTCATATAT.................................................................................... 24 1 4 0.25 1 1 0 0 0 0
...........................................................................................................................................................................................AGGACTATATTCGTACAAGCAGACAT...................................... 26 1 4 0.25 1 0 1 0 0 0
..............................................................................................................................................CTAGAAGCTGGGGTAATTCATATATAT.................................................................................. 27 1 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................................ATAGTGGAGGACTATATTCGTACAG.............................................. 25 1 4 0.25 1 0 0 1 0 0
.....................................................................................................................................................................................................TCGTACAGGCAGACATACAAAAATGCG........................... 27 0 4 0.25 1 1 0 0 0 0
......................................................................................................................................................................................................CGTACAGGCAGACATACAAAAATGCGTTT........................ 29 0 4 0.25 1 1 0 0 0 0
........................................................................................................................................................................................CGGAGGACTATATTCGTACAGGCAGAC........................................ 27 1 4 0.25 1 1 0 0 0 0
..................................................................................TTATGGGGAACGTCTCCCATAATAGT............................................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0
..........................................................................................................................................................................................GAGGACTATATTAGTACAGGC............................................ 21 1 4 0.25 1 0 1 0 0 0
...........................................................................................................................................................................................AGTACTATATTCGTAAAGGCAGACAT...................................... 26 2 4 0.25 1 0 0 1 0 0
............................................................................................................................TGTTGCGTCACTTCCTCTTTAGAAGGT.................................................................................................... 27 2 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................................GGAGGACTATATTCGTACATGCAGACAT...................................... 28 1 4 0.25 1 0 1 0 0 0
.................................CCTTATCTCCGTATAAGTATTCATAAGT.............................................................................................................................................................................................. 28 2 5 0.20 1 1 0 0 0 0
....................................................................................................................................................GCTGGGGTAATTCATATATAT.................................................................................. 21 0 5 0.20 1 0 1 0 0 0
.................................................................................................................................................GAAGCTGGGGTAATTCATATATGT.................................................................................. 24 1 5 0.20 1 1 0 0 0 0
...............................................................................................................................................................................................................AGACATACAAAAATGCGTTTTATCATT................. 27 2 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................................................................................ACAAAAATGCGTTTTATCAGATATT............. 25 2 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................................................................................ACAAAAATGCGTTTTATCAGAGAGTTAA.......... 28 0 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................CTGGGGTAATTCATATATATA................................................................................. 21 0 5 0.20 1 0 1 0 0 0
................................................................................................................................................AGAAGCTGGGGTAATTCATACAT.................................................................................... 23 1 5 0.20 1 1 0 0 0 0
................................CCCTTATCTCCGTATAAGCATTCAT.................................................................................................................................................................................................. 25 1 5 0.20 1 1 0 0 0 0
............................................................................................................................................................................................................GGCAGACATACAAAAATGCGTTTCAT..................... 26 1 5 0.20 1 1 0 0 0 0
...............................ATCCTTATCTCCGTATAAGCATTCATGG................................................................................................................................................................................................ 28 2 5 0.20 1 1 0 0 0 0
...............................................................................................................................................TAGAAGCTGGGGTAATTCATATA..................................................................................... 23 0 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................................................................................ACAAAAATGCTTTTTATCAGAGAGTT............ 26 1 5 0.20 1 0 0 1 0 0
...................................................................................................................................................................................................................GTACAATAATGGGTTTTATCAGAGAGT............. 27 3 5 0.20 1 0 0 1 0 0
.............................................................................................................................................................................................................GCAGACATACAAAAATGCGTTTTATC.................... 26 0 5 0.20 1 0 1 0 0 0
....................................................................CTTTTTTACAAAAATTATGGGGAACGT............................................................................................................................................................ 27 0 5 0.20 1 0 0 1 0 0
................................TCCTTATCTCCGTATAAGCATTCATA................................................................................................................................................................................................. 26 0 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................................................................................TCAAAAATGCGTTTTATCAGAGACTT............ 26 2 5 0.20 1 1 0 0 0 0
...............................................................................................................................................................................................CTATATTCGTACAGGCAGACATACAAA................................. 27 0 5 0.20 1 1 0 0 0 0
...................................................................................................................................................................................................................ATACAAAAATGCGTTTTATCAGAGAG.............. 26 0 5 0.20 1 0 1 0 0 0
............................................................................................................................................................................................GGACTATACTCTTCCAGGCAGACAT...................................... 25 3 5 0.20 1 0 0 1 0 0
.....................................................................................................................................................................................................................ACAAAAATGCGTTTTATAAGAGAGTT............ 26 1 5 0.20 1 0 1 0 0 0
.....................................................................TTTTTTACAAAAATTATGGGGAACGT............................................................................................................................................................ 26 0 5 0.20 1 1 0 0 0 0
...............................................................................................................................................................................................CTATATTCGTACAGGCAGACATACA................................... 25 0 5 0.20 1 1 0 0 0 0
...............................ATCCTTATCTCCGTATAAGCATTCATC................................................................................................................................................................................................. 27 1 5 0.20 1 1 0 0 0 0
.............................................................................................................................................................................................................GCAGACATACAAAAATGCTTTTTAT..................... 25 1 5 0.20 1 0 0 1 0 0
......................................................................................................................................................TGGGGTAATTCATATATATAAGAA............................................................................. 24 0 5 0.20 1 0 1 0 0 0
............................TTTATCCTTATCTCCGTAT............................................................................................................................................................................................................ 19 1 5 0.20 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12935:37726-37976 - AGCTCCTTAAA--------------------AT-----------------------------GGAAGGAGATA------------TAAAA--ACTAGGAATAGA-------------------------------G--------G------------------------------------CATAT--------------------------------------------------------------------------------------------------------------------------------------TCG--------T------AAG-------------------TATTAAATATTT-GGAAAAA-AT----GTTTTTAATACCCCTT-----GCA-------------GAGGGTATT----ATAATTTTGG--TCA-----AAAGTGTGCAACG------CAGTGAAGGAGAAATCTTCGACCCCATTAAGTATATATATT-------------CTTGATCAGGATCACCTCCT---------GATATAAGCATGTCCGTCTGTATGT--------TTTTACGCAAAATAGTC------TCTCAA---TTTTAAGCGCT----G
droBip1 scf7180000395111:23776-24025 + AGTTTCTTAAC--------------------A-------------------------------CTGGTA--------------AG----TTTA---------------------------------A-AAAAATA---------------------------------TTTAA--------GACATCTGTAGT-------------------------------------------------AAATTGTGAA-----------------------------------------------------------------------------------------------------------------------T-TAAAACTAT-----TGTT-TTTATACCCTT-----GCA-------------GAGGATATT----ATAATTTTGT--CCA-----AAAGTGTGCAACG------CAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATT-------------CTTGATCAGGATCACCTCCT----GAGTTGATATGAGCATGTCCGTCGGTCCATCTGTCTGTTTCTACGCGAACTAGTC------TCTCAG---TTTTAA----------
droKik1 scf7180000299971:4002-4250 + AGCTGTCTGAA--------------------G--------------------------CATTGGAAA--------CAATTT----TCAAC--TCTAGGCATGGA-------------------------------G---------------------------------------------------------AACCTCAGAATCTACAAACAGATG--------------------------------------------------------------------------------------------------------------------------AC-------------------GAAAA--------------A-G-----AGTT-TTTATACCCTT-----GCA---------------GGGTATT----ATAATTTCAG--TCA-----GAAGTTTGCAACG------CAGTGAAGGAGACCTTTCCGACCCTATAAAGTATATATATT-------------CTTGATCAGCATCAACAGCC----GAGTCGATCTAGCCATGTCCGTCTGTCCGT--------TTCTACGCAAACTAGTC------CCTCAG---TTTTAA----------
droFic1 scf7180000454161:62083-62335 - TCTTAA---AAATAAA-------------ATGTGATATGCGTTGTAAAGATAAT--------------------------------------------------------------------------------------------------------------------G-------------------AAT----------------------------------------T---------TC---------------------------------------------------------------CCGAGGTAATCA-----------A------GAA----------------------------------AA--GTT-----TTTT-TTTATACCCTT-----GCAGA------GCA-AAAGGGTATT----ATAATTTCAG--TCA-----GAAGTTTGCAACG------CAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATT-------------CTTGATCAGCATCACGAGCA----GAATCGAAATATGTATGTACGTCTGCCCGTCTGTCCGTTTCCGCGCAAACTAGTC------TCTCAG---TTTTAA----------
droEle1 scf7180000491199:33255-33502 + AAATATTTATA--------------------AT------------------------G---------------------AATAA-----------------------------------------GG--GAAATAT--------T-------------------------AAAAGTTGACACATGCGTGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------TTCACAAAATATGT------G----TG--TGT-----TCTT-TTTATACCCTT-----GCA-------------GAGGGTATT----ATAATTTCAG--TTA-----GAAGTTTGCAACG------CAGTGGAGGAGACATCTCTGACCCTATAAAGTATATATATT-------------CTTGATCAGCATTATTAGGA----GAGCTGATCTAGCCATGTCCGTCTGTCCGTCCG----TTTCTATGCAAAGTAGTC------TCTCAG---TTTTAAG---------
droRho1 scf7180000761121:302806-303045 - AGGATG--------------AAA-------------------------------------------A--------------------------------------------------------ACGCCAAAAATAT--------TAAGATCTGGGATGTCGTTCAATATTAAAT--------AT----------------------------------------------------------------------------------------------------------------------------------------CGT--------A------GAA----------------------------------AA--TTA-----AATA-TTTATACCCTT-----GCA-------------GAGGGTATT----ATAATTTTGG--TCA-----AAAGTGTGCAACG------CAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATT-------------CTTGATCAGGATCACCTCCT----GAGTTGATATAGCCATGTCCGTCTGTCTGT--------TTTTACGCAAACTAGTC------TCTCAG---TTTTAA----------
droBia1 scf7180000302291:1501292-1501539 - AGTACCTTATA--------------------AT------------------------A---------------------TATAAA----TA------------------------------------------TA---------------------------------TTTAAACAAAAATCATATTTGCGCC-------------------------------------------------AAA-------------------------------------------------------------------------------------------------------TTTT--GAAAACAT-T------G----TA--ATT-----AATT-TTTATACCCTT-----GCA-------------GAGGGTATA----ATGATTTCAG--TCA-----GAAGTTTGCAACG------CAGTGAAGGAGACGTTTCCGACCCCATAAAATATATATATT-------------CTTGATCAGCGTCACAAGAC----GAGTTGAACTAGCCATCCCCGTCTGTCCGTCTG----TTTCTACGCAAACTAGTC------TCTCAG---TTCTAA----------
droTak1 scf7180000415769:3403-3638 + AGCTACTACCA--------------------TT------------------------G----------------------------------------A----------------A---------GG--GAAATATGTAATGAA---G------------------------------------GT-----------------------------------------------------------------------------------------------------------------CATAAGTTCCCGTG--------CC---------------------------TT---------------------TAAA--TTA-----AGTT-TTTATACCCTT-----GCA-------------GAGGGTATT----ATGATTTCAG--TCA-----GAAGTTTGCAACG------CAGTGAAGGAGACGTTTCCGACCCCATAAATTATATATATT-------------CTTGATCAGCATCACTAGAC----GAGTCGATCTAGCCATGTCCGTCTGTCCGTCTG----TTTCTACGCAAACTAGTC------TCTCAG---TTTT------------
droEug1 scf7180000408176:1035945-1036171 + GCTCTTTAGAG--------------------G-------------------------------GATGTA--------------GC----TATA---------------------------------G--GGAATA---------------------------------TTCAAA--------GTGT----------------------------------------------------------------------------------------------------------------------------------------TAGAAAGTGTTATGGGTAA----------------------------------TA--TTT-----AGTT-TTTATACCCGTTACTCGTAGA------GTA-AAAGGGTATA----CTAGATTCGT--TGA-----AAAGTATGTAACA------GATAGAAGGAAGCTTTTGCGACCCTATAAAGTATATATATT-------------CTTGATCAGGATCAATAGCG----AAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTC--------CG-----------------------------------------
dm3 chr3L:6124758-6124990 + ATATAGGAACA--------------------TC------------------------G----------------------------------------AATAAT-------------------------------T--------A------------------------------------AACAC--------------------------------------------------------------------------------------------------------------------------------------CTG--------T------TAC-------------------AACTAAGCATTT-CAAAGCT-ACCCTCTTTA-ATTTTGCCCTT-----GCA-------------GAGGCTTATACCTCTGATATCAG--TCA-----GAAGTTTGCAACG------CAGTGAGGGAGACATGTGCAACTAAATAAAGTTTATATATGTGTACATATTTATATACATCAGTTTCAATAGTC----AAGCCG-------------------------------TTTCTACGCAAAATAGTAATAGTATCTCAG---TTTAAGG---------
droSim2 3l:6034047-6034273 + ATGTAGGAACT--------------------T----------------------------------------------------------------AAAATAAT-------------------------------T--------T------------------------------------AACAT--------------------------------------------------------------------------------------------------------------------------------------CTG--------T------TAC-------------------AATTAAGCATTT-TAAAGCT-ACGCTCTTTA-ATTTTACCCTT-----GCA-------------GAGGGTTATACCTATGATATCAG--TCA-----GAAGTTTGCAACG------CAATGAGGGAGACATGTGCAACCAAATAAAGTTTATATGTA----TAT------ATTTATATACAT---CCATT----TCGTCAAATCAACTCAAG------------CCG----TTTCTACGCAAACTAGTA------ACTCAG---TTTTA-----------
droSec2 scaffold_28:739087-739352 + CTTTCTTTAAA---CA-------------TTATAAAATGCAATAACAAGATTATGTG-CAGTGTAAA--------CGG---------------------------------------------------------T--------T-------------------TCTATTTAAT--------AG-----TAAT----------------------------------------T---------AC---------------------------------------------------------------TCCTGGTAAACT-----------G------AT-----------------------------------GA--TGG-----ATTT-ATTATACCCGTTACTCGTAGA------ATA-AAAGGGTATA----CTAGATTTGT--TAA-----TAAGTGTGCAAAGGAAGTAGGCAGAATGAAGCGTTTCCGACCATATAAAGTATATATATT-------------CTTGAATAGGATCAATAGCCTATAGAGTCGATCTGGCCATGTCCTTCTGTCCGTATGA--------ACG-----------------------------------------
droYak3 v2_chr2L_random_001:299244-299497 - TCTT---TAAA---AGCTAGAA--------------------------------------------AGAGACA------------GAAACATA-----------------------------GACGCAGAAACCGC--------CCAG------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------CTG--------T------AACGCCCAAATTTT--TAAAACATTT---------------GTT-----TATT-GCTATACCCGTTACTCGTAGA------GTA-AAAGGGTATA----CTAGATTCGT----------------TGAAACA------GGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATT-------------CTTGATCAGGATCAATAGCC----GAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTC----T------------GTC------CGTCCG---TTTGAG-CGCT----G
droEre2 scaffold_4845:1765662-1765867 + TGGAAG--------------AAGAATTCATTAT------------------------G---------------------AT---------------------------------------------------------------TGAGGTGTAAAATCACA-------TTC-----------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTT---------------------TGAA--A-A-----TATT-TTTATACCCGTTACTCGTAGA------GTA--AAGGGTATA----AG-GGTTCGT--TGA-----AAAGTATGTAACA------GGCAGAAGGAAGCG------------TGAAGTATATATATT-------------CTTGATCAGGATCAAT------------------AACCATGTCTGTCTGTCCGTA--------T----------TAACA------CCTCGA---TCTTAGGAACT-----
dp5 3:1715157-1715398 + AACTTGCTAAA--------------------A-------------------------------GAACTA--------------AG------------------------------------------------TA---------------------------------TTTAAACT--------AT-----------------------AACTAACTACGAGAAATGTATGTTTATATTAGTGATTTAAGAAGTGGAAGGGTTGTAGATATTATACGGTAAAGGGAATTATAATCAGGTCATAAGATT-----------------------------------------------------------------------------------------------------------------------------------------------------CTAAGCTCTAACT------CCCAGAAGGGAGCGTTTCCGACCCCATAAAGTATATATATT-------------CTTGATCAGCATCAATAACC----GAGTCGATTGATCCATGTCTGTCTGTCCGTAGTTC--------CG-----------------------------------------
droPer2 scaffold_43:258409-258651 - AGCTCG--------------AAA--------AT------------------------G---------------------TT-----------------TGCGGTCTCCCACATGAAAAAATATACGTATATACAGT--------TCAT------------------------------------ATGTATATT----------------------------------------T---------AT-----------------------------------------------------------------------------------------------------------------------------------T--TAT-----GGTT-TTTATACCCGATACTCAAA----ATGAGTA-TTGGGGTATA----TTAGATTTGTGGTGAAAGGGGATGTGTGTAACG------TCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATT-------------CTTGATGAGCATCAATAGCC----GAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGTC--------CG-----------------------------------------
droWil2 scf2_1100000004960:76755-77014 - CTTAATGTGAA--------------------T----------------------------------GATGATATATAA---------------------------------------------ATGTCA------------------------------------------------------AATTCAAGTTAAATTTTTAATTTAATATCAAAATA---------------------------------------------------------------------------------------------------------------------------------------------C----------------A--A-A----TGTTT-ATTATACCCTT-----GCA-------------GAGGGTATT----ATAAAATTGG--TCA-----GATGTTTGTAACG------CACAGAAGGAGACGTTTCCGACCCCATAAAGTATATATATT-------------CTTGATCAGCATGAGAAGCT----GAGTCGATATAGCCATGTCCGTCTGTCCGTCCGTC----TGTGCGTATGCGTTTT------ACTCAGCCGTCTTAAGAGCTATCGG
droVir3 scaffold_13045:249063-249291 - GGAA--------------------------------------------------------------GCAAATC------------TAAATGTACTCAAAA-----------------------------AAAGTAG--------CCGT------------------------------------TA--------------------------------------------------------------------------------------------------------------------------------------TTG--------A------AAA----------------------TAATAAATT-TAAA--T-A-----TATT-TTTATACCCTT-----GCA-------------GATGGTATT----ATAATTTTGT--CGT-----GAAATGTGTAACG------CATAGAAGGAGACATCTCCGACCCCATAAAGTATATATATT-------------CTTAATCAGCATCAACAGCC----G------TC------TATCCGTCTGTCCGTCTGTCTGTTTCTATGCAAACTAGTC------CCTCAG---TTTTA-----------
droMoj3 scaffold_6500:11425642-11425925 + AGCTTCTGAAA--------------------TT------------------------G---------------------TAT-------------------AG----------TAAAAAGAACACGG--GAAATAACTAAAGAA---T------------------------------------TTCTTTAAT----------------------------------------T---------ATTT--------------------------------------------------------------------------------------------------------TTGGATAA------GCTGTTTGGGAA--ACT-----ACTT-TTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATA----ATGGTTTTGT--TGA-----AATGTATGTAACA------GGCAGAAGGAGGCGTGGCAGACCCTACAAAGTATATATATT-------------CTTGATCAGTGTGACGAGCT----GAGTCGATTTGGCCCTGTCCGTCTGTCTGTCTGTC----CGTCTGT----CCGTC--TGTCCGTATG---TTTGAG-CGC------
droGri2 scaffold_15126:1594463-1594676 - TAAGAA--------------A--------------------------------------------------------------------------------------------------------------AGTAT--------CT-------------------------------------TTT-------------------------------------------------TTTGAATT-----------------------------------------------------------------------------CTT--------A------TAT-------------------ATTTAT---------------G-----CATT-TGAATACACTT-----TCA-------------GAGGATATT----ATAATTTTAT--AGT-----GAAGTTTGGAAGG------CATTGAAAGAGAAATCTCCAACTCTTATATATATATATATT-------------TTTGATCAGCAATCCAAGTC----GAGTGGATATAGTCATGTTCGTCCTTTTTTCTG----TTTCTTTAATACGTAGTC------CCTCAG---ATTT------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AGCTCCTTAAA--------------------AT-----------------------------GGAAGGAGATA------------TAAAA--ACTAGGAATAGA-------------------------------G--------G------------------------------------CATAT--------------------------------------------------------------------------------------------------------------------------------------TCG--------T------AAG-------------------TATTAAATATTT-GGAAAAA-AT----GTTTTTAATACCCCTT-----GCA-------------GAGGGTATT----ATAATTTTGG--TCA-----AAAGTGTGCAACG------CAGTGAAGGAGAAATCTTCGACCCCATTAAGTATATATATT-------------CTTGATCAGGATCACCTCCT---------GATATAAGCATGTCCGTCTGTATGT--------TTTTACGCAAAATAGTC------TCTCAA---TTTTAAGCGCT----GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACG------CAGTGAAGGAGAAATCTTC.................................................................................................................................................2621.002011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATCTTCGACCCCATTAAGTATATA...............................................................................................................................2811.001100000
................................T-----------------------------GGAAGGAGATA------------TAAAA--ACTAGGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG------CAGTGAAGGAGAAATCTTCG................................................................................................................................................2320.501001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGAAGGAGAAATCTTCGACCCCA..........................................................................................................................................2620.501001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG------CAGTGAAGGAGAAATCTTCGACC.............................................................................................................................................2620.501010000
.......................................................................TA------------TAAAA--ACTAGGAATAGA-------------------------------G--------G------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501010000
........................................................................A------------TAAAA--ACTAGGAATAGA-------------------------------G--------G------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501100000
......................................................................................AAAA--ACTAGGAATAGA-------------------------------G--------G------------------------------------CATAT--------------------------------------------------------------------------------------------------------------------------------------TC..............................................................................................................................................................................................................................................................................................................................2520.501100000
.......................................................................TA------------TAAAA--ACTAGGAATAGA-------------------------------G--------G------------------------------------CATAT--------------------------------------------------------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................................................................2620.501010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG------CAGTGAAGGAGAAATCTTCGACC.............................................................................................................................................2720.501010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG------CAGTGAAGGAGAAATCTTCGAC..............................................................................................................................................2520.501010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCT---------GATATAAGCATGTCCGTC...............................................................2640.502200000
........................................................................................AA--ACTAGGAATAGA-------------------------------G--------G------------------------------------CATAT--------------------------------------------------------------------------------------------------------------------------------------TCG--------T------CCA-------------------........................................................................................................................................................................................................................................................................................2820.501100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGGAGAAATCTTCGACCC............................................................................................................................................2330.331010000
......................................................................................................................................................................................ATAT--------------------------------------------------------------------------------------------------------------------------------------TCG--------T------AAG-------------------TATTAAATATTT-GGA........................................................................................................................................................................................................................................................................2630.331100000
..................................................................................................................................................................................................................................................................................................................................G--------T------AAG-------------------TATTAAATATTT-GGAAAAA-AT----G............................................................................................................................................................................................................................................................2730.331010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGG--TCA-----AAAGTGTGCAACG------CAG.................................................................................................................................................................28200.306600000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCATGTCCGTCTGTATGT--------TTT.............................................2440.251010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCT---------GATATAAGCATGTCCGTCTGT............................................................2840.251100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCT---------GATATAAGCATGTCC..................................................................2340.251010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GATATAAGCATGTCCGTCTGTAT..........................................................2440.251010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCTCCT---------GATATAAGCATGTCCGTC...............................................................2740.251100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCT---------GATATAAGCATGTCCGTCTGTATGT--------................................................2940.251010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCT---------GATATAAGCATGTCCGTCTGTA...........................................................2640.251100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCT---------GATATAAGCATGTCCGTCTG.............................................................2440.251100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCTCCT---------GATATAAGCATG.....................................................................2140.251100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCT---------GATATAAGCATGTCCGT................................................................2540.251100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGG--TCA-----AAAGTGTGCA.............................................................................................................................................................................21200.204400000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGCATGTCCGTCTGTATGT--------T...............................................2450.201010000
........................................................................................................................................................................................................................................................................................................................................................................................AAAA-AT----GTTTTTAATACCCCTT-----GC......................................................................................................................................................................................................................................2450.201010000
...........................................................................................................................................................................................................................................................................................................................................................................................A-AT----GTTTTTAATACCCCTT-----GC......................................................................................................................................................................................................................................2150.201010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTATGT--------TTTTACGCAAA.....................................2660.171100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACGCAAAATAGTC------TCTCAA---TTTT............2760.171010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TTTTACGCAAAATAGTC------TCTCAA---TT..............2660.171010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCAACG------CAGTGAAGGAG.........................................................................................................................................................22200.153030000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCATGTCCGTCTGTATG.........................................................2070.141100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------CTTGATCAGGATCACCTCCT---------GAT..............................................................................25150.132110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTGCAACG------CAGTGAAGGAGAA.......................................................................................................................................................25200.102020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATT----ATAATTTTGG--TCA-----AAAGTGTGC..............................................................................................................................................................................25200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTGCAACG------CAGTGAAGGAGAAAT.....................................................................................................................................................27200.051100000
droBip1
AGTTTCTTAAC--------------------A-------------------------------CTGGTA--------------AG----TTTA---------------------------------A-AAAAATA---------------------------------TTTAA--------GACATCTGTAGT-------------------------------------------------AAATTGTGAA-----------------------------------------------------------------------------------------------------------------------T-TAAAACTAT-----TGTT-TTTATACCCTT-----GCA-------------GAGGATATT----ATAATTTTGT--CCA-----AAAGTGTGCAACG------CAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATT-------------CTTGATCAGGATCACCTCCT----GAGTTGATATGAGCATGTCCGTCGGTCCATCTGTCTGTTTCTACGCGAACTAGTC------TCTCAG---TTTTAA----------SizeHit CountTotal NormTotal
No Reads
droKik1
AGCTGTCTGAA--------------------G--------------------------CATTGGAAA--------CAATTT----TCAAC--TCTAGGCATGGA-------------------------------G---------------------------------------------------------AACCTCAGAATCTACAAACAGATG--------------------------------------------------------------------------------------------------------------------------AC-------------------GAAAA--------------A-G-----AGTT-TTTATACCCTT-----GCA---------------GGGTATT----ATAATTTCAG--TCA-----GAAGTTTGCAACG------CAGTGAAGGAGACCTTTCCGACCCTATAAAGTATATATATT-------------CTTGATCAGCATCAACAGCC----GAGTCGATCTAGCCATGTCCGTCTGTCCGT--------TTCTACGCAAACTAGTC------CCTCAG---TTTTAA----------SizeHit CountTotal NormTotal
No Reads
droFic1
TCTTAA---AAATAAA-------------ATGTGATATGCGTTGTAAAGATAAT--------------------------------------------------------------------------------------------------------------------G-------------------AAT----------------------------------------T---------TC---------------------------------------------------------------CCGAGGTAATCA-----------A------GAA----------------------------------AA--GTT-----TTTT-TTTATACCCTT-----GCAGA------GCA-AAAGGGTATT----ATAATTTCAG--TCA-----GAAGTTTGCAACG------CAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATT-------------CTTGATCAGCATCACGAGCA----GAATCGAAATATGTATGTACGTCTGCCCGTCTGTCCGTTTCCGCGCAAACTAGTC------TCTCAG---TTTTAA----------SizeHit CountTotal NormTotal
No Reads
droEle1
AAATATTTATA--------------------AT------------------------G---------------------AATAA-----------------------------------------GG--GAAATAT--------T-------------------------AAAAGTTGACACATGCGTGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------TTCACAAAATATGT------G----TG--TGT-----TCTT-TTTATACCCTT-----GCA-------------GAGGGTATT----ATAATTTCAG--TTA-----GAAGTTTGCAACG------CAGTGGAGGAGACATCTCTGACCCTATAAAGTATATATATT-------------CTTGATCAGCATTATTAGGA----GAGCTGATCTAGCCATGTCCGTCTGTCCGTCCG----TTTCTATGCAAAGTAGTC------TCTCAG---TTTTAAG---------SizeHit CountTotal NormTotal
No Reads
droRho1
AGGATG--------------AAA-------------------------------------------A--------------------------------------------------------ACGCCAAAAATAT--------TAAGATCTGGGATGTCGTTCAATATTAAAT--------AT----------------------------------------------------------------------------------------------------------------------------------------CGT--------A------GAA----------------------------------AA--TTA-----AATA-TTTATACCCTT-----GCA-------------GAGGGTATT----ATAATTTTGG--TCA-----AAAGTGTGCAACG------CAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATT-------------CTTGATCAGGATCACCTCCT----GAGTTGATATAGCCATGTCCGTCTGTCTGT--------TTTTACGCAAACTAGTC------TCTCAG---TTTTAA----------SizeHit CountTotal NormTotal
No Reads
droBia1
AGTACCTTATA--------------------AT------------------------A---------------------TATAAA----TA------------------------------------------TA---------------------------------TTTAAACAAAAATCATATTTGCGCC-------------------------------------------------AAA-------------------------------------------------------------------------------------------------------TTTT--GAAAACAT-T------G----TA--ATT-----AATT-TTTATACCCTT-----GCA-------------GAGGGTATA----ATGATTTCAG--TCA-----GAAGTTTGCAACG------CAGTGAAGGAGACGTTTCCGACCCCATAAAATATATATATT-------------CTTGATCAGCGTCACAAGAC----GAGTTGAACTAGCCATCCCCGTCTGTCCGTCTG----TTTCTACGCAAACTAGTC------TCTCAG---TTCTAA----------SizeHit CountTotal NormTotal
No Reads
droTak1
AGCTACTACCA--------------------TT------------------------G----------------------------------------A----------------A---------GG--GAAATATGTAATGAA---G------------------------------------GT-----------------------------------------------------------------------------------------------------------------CATAAGTTCCCGTG--------CC---------------------------TT---------------------TAAA--TTA-----AGTT-TTTATACCCTT-----GCA-------------GAGGGTATT----ATGATTTCAG--TCA-----GAAGTTTGCAACG------CAGTGAAGGAGACGTTTCCGACCCCATAAATTATATATATT-------------CTTGATCAGCATCACTAGAC----GAGTCGATCTAGCCATGTCCGTCTGTCCGTCTG----TTTCTACGCAAACTAGTC------TCTCAG---TTTT------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCTCTTTAGAG--------------------G-------------------------------GATGTA--------------GC----TATA---------------------------------G--GGAATA---------------------------------TTCAAA--------GTGT----------------------------------------------------------------------------------------------------------------------------------------TAGAAAGTGTTATGGGTAA----------------------------------TA--TTT-----AGTT-TTTATACCCGTTACTCGTAGA------GTA-AAAGGGTATA----CTAGATTCGT--TGA-----AAAGTATGTAACA------GATAGAAGGAAGCTTTTGCGACCCTATAAAGTATATATATT-------------CTTGATCAGGATCAATAGCG----AAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTC--------CG-----------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATATAGGAACA--------------------TC------------------------G----------------------------------------AATAAT-------------------------------T--------A------------------------------------AACAC--------------------------------------------------------------------------------------------------------------------------------------CTG--------T------TAC-------------------AACTAAGCATTT-CAAAGCT-ACCCTCTTTA-ATTTTGCCCTT-----GCA-------------GAGGCTTATACCTCTGATATCAG--TCA-----GAAGTTTGCAACG------CAGTGAGGGAGACATGTGCAACTAAATAAAGTTTATATATGTGTACATATTTATATACATCAGTTTCAATAGTC----AAGCCG-------------------------------TTTCTACGCAAAATAGTAATAGTATCTCAG---TTTAAGG---------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
ATGTAGGAACT--------------------T----------------------------------------------------------------AAAATAAT-------------------------------T--------T------------------------------------AACAT--------------------------------------------------------------------------------------------------------------------------------------CTG--------T------TAC-------------------AATTAAGCATTT-TAAAGCT-ACGCTCTTTA-ATTTTACCCTT-----GCA-------------GAGGGTTATACCTATGATATCAG--TCA-----GAAGTTTGCAACG------CAATGAGGGAGACATGTGCAACCAAATAAAGTTTATATGTA----TAT------ATTTATATACAT---CCATT----TCGTCAAATCAACTCAAG------------CCG----TTTCTACGCAAACTAGTA------ACTCAG---TTTTA-----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CTTTCTTTAAA---CA-------------TTATAAAATGCAATAACAAGATTATGTG-CAGTGTAAA--------CGG---------------------------------------------------------T--------T-------------------TCTATTTAAT--------AG-----TAAT----------------------------------------T---------AC---------------------------------------------------------------TCCTGGTAAACT-----------G------AT-----------------------------------GA--TGG-----ATTT-ATTATACCCGTTACTCGTAGA------ATA-AAAGGGTATA----CTAGATTTGT--TAA-----TAAGTGTGCAAAGGAAGTAGGCAGAATGAAGCGTTTCCGACCATATAAAGTATATATATT-------------CTTGAATAGGATCAATAGCCTATAGAGTCGATCTGGCCATGTCCTTCTGTCCGTATGA--------ACG-----------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACCATATAAAGTA...................................................................................................................................23200.0511000
droYak3
TCTT---TAAA---AGCTAGAA--------------------------------------------AGAGACA------------GAAACATA-----------------------------GACGCAGAAACCGC--------CCAG------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------CTG--------T------AACGCCCAAATTTT--TAAAACATTT---------------GTT-----TATT-GCTATACCCGTTACTCGTAGA------GTA-AAAGGGTATA----CTAGATTCGT----------------TGAAACA------GGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATT-------------CTTGATCAGGATCAATAGCC----GAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTC----T------------GTC------CGTCCG---TTTGAG-CGCT----GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------CTTGATCAGGATCAATAGCC----GAGT..................................................................................26203.7575075000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------GGCAGAAGGAAGCGTTTCCG................................................................................................................................................24200.30600000000006
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACA------GGCAGAAGGAAGC.......................................................................................................................................................20160.06100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----GAGTCGATCTGGCCATGTCCGTC...............................................................25200.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATT-------------CTTGATCAGGA...................................................................................................20200.05101000000000
droEre2
TGGAAG--------------AAGAATTCATTAT------------------------G---------------------AT---------------------------------------------------------------TGAGGTGTAAAATCACA-------TTC-----------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTT---------------------TGAA--A-A-----TATT-TTTATACCCGTTACTCGTAGA------GTA--AAGGGTATA----AG-GGTTCGT--TGA-----AAAGTATGTAACA------GGCAGAAGGAAGCG------------TGAAGTATATATATT-------------CTTGATCAGGATCAAT------------------AACCATGTCTGTCTGTCCGTA--------T----------TAACA------CCTCGA---TCTTAGGAACT-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT--TGA-----AAAGTATGTAACA------GGCAGA..............................................................................................................................................................26200.1530000003
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGT--TGA-----AAAGTATGTAACA------GGCAGAAGGA..........................................................................................................................................................31200.0510000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACA------GGCAGAAGGA..........................................................................................................................................................18200.0510001000
dp5
AACTTGCTAAA--------------------A-------------------------------GAACTA--------------AG------------------------------------------------TA---------------------------------TTTAAACT--------AT-----------------------AACTAACTACGAGAAATGTATGTTTATATTAGTGATTTAAGAAGTGGAAGGGTTGTAGATATTATACGGTAAAGGGAATTATAATCAGGTCATAAGATT-----------------------------------------------------------------------------------------------------------------------------------------------------CTAAGCTCTAACT------CCCAGAAGGGAGCGTTTCCGACCCCATAAAGTATATATATT-------------CTTGATCAGCATCAATAACC----GAGTCGATTGATCCATGTCTGTCTGTCCGTAGTTC--------CG-----------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................TGGAAGGGTTGTAGATATTATACGG..........................................................................................................................................................................................................................................................................................................................................................................2517.0070000000070
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAACC----GAGTCG................................................................................25143.214504210000200
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAACC----GAGTCGA...............................................................................26142.713803400000310
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAACC----GAGT..................................................................................23141.792502310100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCATGTCTGTCTGTCCGTAGT.....................................................2511.0010000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAACC----GAG...................................................................................22150.67100900000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAACC----GAGTCGAT..............................................................................27130.6280710000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAACC----GAGTC.................................................................................24140.2940400000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAACC----GAGTCG................................................................................24150.2030300000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCATGTCTGTCTGTCCG.........................................................2160.1710010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTTTCCGACCCCATAAAGTA...................................................................................................................................2460.1710100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAACC----GA....................................................................................21150.1320200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAACC----GAGTCGA...............................................................................25150.1320200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAACC----GAGTCGATT.............................................................................2790.1110100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAACC----GAGTCGATTGA...........................................................................2190.1110100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAACC----G.....................................................................................21140.0710100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATT-------------CTTGATCAGCATCAATAACC----......................................................................................25150.0710100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAACC----GAGT..................................................................................22150.0710100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATT-------------CTTGATCAGCATCAATAAC...........................................................................................24150.0710100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATT-------------CTTGATCAGCATCAATAA............................................................................................23150.0710100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAACC----GAGTCGAT..............................................................................23150.0710100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT-------------CTTGATCAGCATCAATAA............................................................................................22150.0710000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAACC----GAGG..................................................................................23190.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATT-------------CTTGATCAGCATCAA...............................................................................................22200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATT-------------CTTGATCAG.....................................................................................................24200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGACCCCATAAAGTATA.................................................................................................................................20200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAACC----GAGTA.................................................................................24200.0510000100000
droPer2
AGCTCG--------------AAA--------AT------------------------G---------------------TT-----------------TGCGGTCTCCCACATGAAAAAATATACGTATATACAGT--------TCAT------------------------------------ATGTATATT----------------------------------------T---------AT-----------------------------------------------------------------------------------------------------------------------------------T--TAT-----GGTT-TTTATACCCGATACTCAAA----ATGAGTA-TTGGGGTATA----TTAGATTTGTGGTGAAAGGGGATGTGTGTAACG------TCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATT-------------CTTGATGAGCATCAATAGCC----GAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGTC--------CG-----------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAAGGGGATGTGTG...............................................................................................................................................................................1850.603000003
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGGGGATGTG.................................................................................................................................................................................2050.402000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTGAAAGGGGAT....................................................................................................................................................................................2040.251000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGGGGATGTGTGTA.............................................................................................................................................................................2150.201000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGGGGATGTGTGT..............................................................................................................................................................................1850.201010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCC----GAGTCG................................................................................19200.153000003
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGAGCATCAATAGCC----GA....................................................................................21110.091000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TTAGATTTGTGGTGAAAGGGGG.....................................................................................................................................................................................23130.081010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCCATGTCTGTCTGT............................................................21200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTC...........................................................19200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCTGTCTGTCCGTCTGTC--------...........................................23200.051000001
droWil2
CTTAATGTGAA--------------------T----------------------------------GATGATATATAA---------------------------------------------ATGTCA------------------------------------------------------AATTCAAGTTAAATTTTTAATTTAATATCAAAATA---------------------------------------------------------------------------------------------------------------------------------------------C----------------A--A-A----TGTTT-ATTATACCCTT-----GCA-------------GAGGGTATT----ATAAAATTGG--TCA-----GATGTTTGTAACG------CACAGAAGGAGACGTTTCCGACCCCATAAAGTATATATATT-------------CTTGATCAGCATGAGAAGCT----GAGTCGATATAGCCATGTCCGTCTGTCCGTCCGTC----TGTGCGTATGCGTTTT------ACTCAGCCGTCTTAAGAGCTATCGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGG--TCA-----GATGTTTGTAACG------CA..................................................................................................................................................................25200.30600060
............................................................................AA---------------------------------------------ATGTCA------------------------------------------------------AATTCAAGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.15300030
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT-------------CTTGATCAGCATGAGAAGCT----G.....................................................................................25200.15303000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGACGTTTCCGACCCCATAAAGT....................................................................................................................................27200.15300030
.............................................................................................................................GTCA------------------------------------------------------AATTCAAGTTAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10200020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------ACTCAGCCGTCTTAAGAGC......22200.10202000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATGCGTTTT------ACTCAGCCGTCTTAA..........27200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATGAGAAGCT----GAGTCGATATAGC.........................................................................28200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGAGAAGCT----GAGTCGATATA...........................................................................24200.05100100
................................................................................................................................................................................................................TATCAAAATA---------------------------------------------------------------------------------------------------------------------------------------------C----------------A--A-A----TGTTT-AT......................................................................................................................................................................................................................................................21200.05100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTC----TGTGCGTATGCG...................................19200.05101000
...........................................................................................................................ATGTCA------------------------------------------------------AATTCAAGTTAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
................................................................................................................................................................................................................TATCAAAATA---------------------------------------------------------------------------------------------------------------------------------------------C----------------A--A-A----TGTTT-........................................................................................................................................................................................................................................................19200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGAAGCT----GAGTCGA...............................................................................19200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCCATGTCCGTCTGTCC..........................................................21200.05100001
................................................................................................................................................................................................................TATCAAAATA---------------------------------------------------------------------------------------------------------------------------------------------C----------------A--A-A----TGTT..........................................................................................................................................................................................................................................................18200.05100010
droVir3
GGAA--------------------------------------------------------------GCAAATC------------TAAATGTACTCAAAA-----------------------------AAAGTAG--------CCGT------------------------------------TA--------------------------------------------------------------------------------------------------------------------------------------TTG--------A------AAA----------------------TAATAAATT-TAAA--T-A-----TATT-TTTATACCCTT-----GCA-------------GATGGTATT----ATAATTTTGT--CGT-----GAAATGTGTAACG------CATAGAAGGAGACATCTCCGACCCCATAAAGTATATATATT-------------CTTAATCAGCATCAACAGCC----G------TC------TATCCGTCTGTCCGTCTGTCTGTTTCTATGCAAACTAGTC------CCTCAG---TTTTA-----------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACG------CATAGAAGG...........................................................................................................................................................21203.907800000000000000000000000600000260000460000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACG------CATAGAAGGA..........................................................................................................................................................22202.80560000000000000000000000000056000000000000000000000000000000000000
........................................................................................ATGTACTCAAAA-----------------------------AAAGTAG--------CC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.331000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGTAACG------CATAGAAGGAGAC.......................................................................................................................................................26200.204000000000000000000000000000030000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATT-------------CTTAATCAGCATCAACA.............................................................................................23200.102002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GAAATGTGTAACG------CATAGAAGGAGAC.......................................................................................................................................................27200.102000000000000000000000000000000200000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATT-------------CTTAATCAGCATCAACAGCC----......................................................................................25200.102000000000000000000000000000020000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGTAACG------CATAGAAGGAGACA......................................................................................................................................................27200.102000000000000000000000000000000100000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATT-------------CTTAATCAGCATCAACAGCC----......................................................................................26200.051000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACG------CATAGAAGGAG.........................................................................................................................................................18200.051000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATT-------------CTTAATCAGCATCAACAGCC----......................................................................................28200.051000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATT-------------CTTAATCAGCA...................................................................................................26200.051000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CGT-----GAAATGTGTAACG------CATAGAAGGA..........................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATT-------------CTTAATCAGCATC.................................................................................................28200.051000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG------CATAGAAGGAGACATCTCC.................................................................................................................................................22200.051000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATT-------------CTTAATCAGCATCAACAGCC----G------...............................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTCTGTCTG.................................................20200.051000000000000000000000000000000010000000000000000000000000000000
droMoj3
AGCTTCTGAAA--------------------TT------------------------G---------------------TAT-------------------AG----------TAAAAAGAACACGG--GAAATAACTAAAGAA---T------------------------------------TTCTTTAAT----------------------------------------T---------ATTT--------------------------------------------------------------------------------------------------------TTGGATAA------GCTGTTTGGGAA--ACT-----ACTT-TTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATA----ATGGTTTTGT--TGA-----AATGTATGTAACA------GGCAGAAGGAGGCGTGGCAGACCCTACAAAGTATATATATT-------------CTTGATCAGTGTGACGAGCT----GAGTCGATTTGGCCCTGTCCGTCTGTCTGTCTGTC----CGTCTGT----CCGTC--TGTCCGTATG---TTTGAG-CGC------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATA----ATGGTT.....................................................................................................................................................................................................23204.05810000810
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTTGGCCCTGTCCG.................................................................21200.357700000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGT--TGA-----AATGTATGTAACA------GGC.................................................................................................................................................................25200.306600000
................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATA----ATGG.......................................................................................................................................................................................................21200.204000040
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCCTGTCCGTCTGTC...........................................................21200.153000003
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGGAAATCAGGGTATA----ATGGTT.....................................................................................................................................................................................................27200.102000002
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCTGTCCGTCTGTCTGTCT......................................................23200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAGTCGATTTGGCCCTGTC...................................................................20200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATTTGGCCCTGTCCGT................................................................21200.051001000
.....................................................................................................................................................................................................................................................................................................................................................................................................TT-TTTATACCCTGAACCCATTGAAAA................................................................................................................................................................................................................................26200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGCGTGGCAGACCCT...........................................................................................................................................21200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AATGTATGTAACA------GGCAGAAGGAGG........................................................................................................................................................26200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCTGTC----CGTCTGT----C...................................22200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGTC----CGTCTGT----CCGTC--T............................22200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGCT----GAGTCGATTTGGCCC.......................................................................22200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGAAATCAGGGTATA----ATG........................................................................................................................................................................................................22200.051001000
droGri2
TAAGAA--------------A--------------------------------------------------------------------------------------------------------------AGTAT--------CT-------------------------------------TTT-------------------------------------------------TTTGAATT-----------------------------------------------------------------------------CTT--------A------TAT-------------------ATTTAT---------------G-----CATT-TGAATACACTT-----TCA-------------GAGGATATT----ATAATTTTAT--AGT-----GAAGTTTGGAAGG------CATTGAAAGAGAAATCTCCAACTCTTATATATATATATATT-------------TTTGATCAGCAATCCAAGTC----GAGTGGATATAGTCATGTTCGTCCTTTTTTCTG----TTTCTTTAATACGTAGTC------CCTCAG---ATTT------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/17/2015 at 11:29 PM