dan_857

exon [dana_GLEANR_13915:1]; CDS [Dana\GF13859-cds]; intron [Dana\GF13859-in]; Antisense to intron [Dana\GF13858-in]

Name	Class	Family	Strand
Hoana8	DNA	hAT-hobo	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCGGTGAAGCAACGGATTTGGCGGAGACATTGGACACGTGCAAGAAGGTGGTAAAATACTTTAAAAAATCTAATATGCTACACCATTTGCAAACCACCCTGAAAAACCCGTGCCCCACCCGATGAAACTCCCACTATACCATGCTAAAATCAATTATTGACAACTGGGCGGAGGTCAACAATAAATTTAATGAGACGCCAACTGCACCTGTCCTAAATGTTAATTTAGCAGAACTAAAATCTTTAGTGGCG ************************************************************.............(((..........)))......................................................................****************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V105 male body	V039 embryo	V055 head
......................GGAGACATTGGACACGTGCAAGAAGG...........................................................................................................................................................................................................	26	0	3	5.33	16	5	9	0	2	0
......................GGAGACATTGGACACGTGCAAGA..............................................................................................................................................................................................................	23	0	3	2.67	8	1	6	1	0	0
......................GGAGACATTGGACACGTGCAAGAAG............................................................................................................................................................................................................	25	0	3	2.00	6	1	4	1	0	0
..............................................................................TGCACCATTTGCAAACCACCCTGAA....................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0
..........................................................................................................................................CCATGCTAAAATCAATTATTGAC..........................................................................................	23	0	1	1.00	1	1	0	0	0	0
..............................................................AAAAAATCTAATATGCTACACCAT.....................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
....TGAAGCAACGGATTTGGCGGAGACA..............................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.......................GAGACATTGGACACGTGCAAGAAGG...........................................................................................................................................................................................................	25	0	3	1.00	3	1	2	0	0	0
..............................................................................TACACCATTTGCAAACCACCCTGAAA...................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................CCATGCTAAAATCAATTATTGACAAC.......................................................................................	26	0	1	1.00	1	1	0	0	0	0
...................................................TAAAATACTTTAAAAAATCTAATATGCT............................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................AACAATAAATTTAATGAGACGCCAAC.................................................	26	0	1	1.00	1	1	0	0	0	0
...........................................................TGTTAAAAATCTAATATGCTACACC.......................................................................................................................................................................	25	2	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................TTAATGAGACGCCAACTGCACCTGTCC......................................	27	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................TCAACAATAAATTTAATGAGACGCC....................................................	25	0	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................TAATGAGACGCCAACTGCACC...........................................	21	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................ATTTAATGAGACGCCAACTGCACCTG.........................................	26	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................AATTTAATGAGACGCCAACTGCACCTG.........................................	27	0	1	1.00	1	1	0	0	0	0
...............................................................................................................................................CTAAAATCAATTATTGACAACTGGG...................................................................................	25	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................TCAATTATTGACAACTGGGCGGAGGTC...........................................................................	27	0	1	1.00	1	1	0	0	0	0
......................GTAGACATTGGACACGTGCAAGAAGG...........................................................................................................................................................................................................	26	1	3	0.67	2	2	0	0	0	0
......................GGAGACATTGGACACGTGCAAGAAGGT..........................................................................................................................................................................................................	27	0	3	0.67	2	0	2	0	0	0
..................................................................................................................CGAACCGGTGAAACTCCCACT....................................................................................................................	21	3	2	0.50	1	0	0	0	0	1
.........................GACATTGGACACGTGCAAGAAGGTGG........................................................................................................................................................................................................	26	0	2	0.50	1	1	0	0	0	0
.......................GAGACATTGGACACGTGCAAGAAGGTGG........................................................................................................................................................................................................	28	0	2	0.50	1	1	0	0	0	0
............CGGATTTGGCGGAGACATTGGACACTT....................................................................................................................................................................................................................	27	1	2	0.50	1	0	0	1	0	0
..........................................................................................................................................................................................................TGCACCTGTCCTAAATGTTAATTTAGC......................	27	0	2	0.50	1	1	0	0	0	0
..........................................................................................................CCCGTGCCCCACCCGATGAAACTCC........................................................................................................................	25	0	2	0.50	1	0	1	0	0	0
.........................................................................................................ACCCGTGCCCCACCCGATGAAACTCC........................................................................................................................	26	0	2	0.50	1	1	0	0	0	0
.........................GACATTGGACACGTGCAAGAAGGGGG........................................................................................................................................................................................................	26	1	2	0.50	1	0	0	0	1	0
.........CAACGGATTTGGCGGAGACATTGG..........................................................................................................................................................................................................................	24	0	3	0.33	1	0	1	0	0	0
...............................................................................................ACCCTGAAAAACCCGTGCCCCACCCGAT................................................................................................................................	28	0	3	0.33	1	0	1	0	0	0
TCGGTGAAGCAACGGATTTGGCG....................................................................................................................................................................................................................................	23	0	3	0.33	1	0	0	1	0	0
.....................GGGAGACATTGGACACGTGCAAG...............................................................................................................................................................................................................	23	1	3	0.33	1	0	1	0	0	0
.................................................................................ACCATTTGCAAACCACCCTGAAAAACCC..............................................................................................................................................	28	0	3	0.33	1	1	0	0	0	0
............................................................................................ACCACCCTGAAAAACTCGTGCCCC.......................................................................................................................................	24	1	3	0.33	1	1	0	0	0	0
..................................................................................CCATTTGCAAACCACCCTGAAAA..................................................................................................................................................	23	0	3	0.33	1	1	0	0	0	0
.........CAACGGATGTGGCGGAGACATTGG..........................................................................................................................................................................................................................	24	1	3	0.33	1	0	1	0	0	0
TCGGTGAAGCAACGGATTTGG......................................................................................................................................................................................................................................	21	0	3	0.33	1	0	1	0	0	0
............................................................................................ACCACCCTGAAAAACCCGTGCCCCACCC...................................................................................................................................	28	0	3	0.33	1	0	1	0	0	0
......................GGAGACATTGGACACGTGCAAGAA.............................................................................................................................................................................................................	24	0	3	0.33	1	0	1	0	0	0
..............................................................................................CACCCTGAAAAACCCGTGCCCCACCC...................................................................................................................................	26	0	3	0.33	1	0	1	0	0	0
.........CAACGGATTTGGCGGAGACATTG...........................................................................................................................................................................................................................	23	0	3	0.33	1	0	1	0	0	0
..............................................................................................CACCCTGAAAAACCCGTGCCCCAC.....................................................................................................................................	24	0	3	0.33	1	1	0	0	0	0
............................................................................................AGCACCCTGAAAAACCCGTGCCC........................................................................................................................................	23	1	3	0.33	1	1	0	0	0	0
......................GGAGACATTGCACACGTGCAACG..............................................................................................................................................................................................................	23	3	3	0.33	1	0	0	0	1	0
.................................................................................ACATTTTGCAAACCACCCTGAAAAACC...............................................................................................................................................	27	2	3	0.33	1	1	0	0	0	0
..............................................................................................CACCCTGAAAAACCCGTGCCCCA......................................................................................................................................	23	0	3	0.33	1	0	1	0	0	0
......................GGAGACATTGGACACGTGCAAG...............................................................................................................................................................................................................	22	0	3	0.33	1	0	1	0	0	0
............CGGATTTGGCGGAGACATTGGACACG.....................................................................................................................................................................................................................	26	0	3	0.33	1	0	1	0	0	0
.................................................................................................CCTGAAAAACCCGTGCCCCACCCGATG...............................................................................................................................	27	0	3	0.33	1	0	1	0	0	0
.......................GAGACATTGGACACGTGCAAGA..............................................................................................................................................................................................................	22	0	3	0.33	1	0	1	0	0	0
.................................................................................................CCTGAAAAACCCGTGCCCCACCCGAC................................................................................................................................	26	1	3	0.33	1	1	0	0	0	0
.....................CGGAGACATTGGACACGTGCA.................................................................................................................................................................................................................	21	0	3	0.33	1	0	1	0	0	0
......................GGAGTCATTGGACACGTGCAAGA..............................................................................................................................................................................................................	23	1	3	0.33	1	0	1	0	0	0
................................................................................................CCCTGAAAAACCCGTGCCCCACCCGA.................................................................................................................................	26	0	3	0.33	1	0	1	0	0	0
................TTTGGCGGAGACATTGGACACG.....................................................................................................................................................................................................................	22	0	4	0.25	1	0	1	0	0	0
............................................................................................ACCACCCTCAAAAACCCGTGCC.........................................................................................................................................	22	1	5	0.20	1	0	1	0	0	0
........................................................................................ACAAACAACCCTGAAAAACC...............................................................................................................................................	20	2	6	0.17	1	1	0	0	0	0
..............................TGGACACGTGCAAGAAGGTGG........................................................................................................................................................................................................	21	0	7	0.14	1	0	1	0	0	0
...................................................................................................................................................................................................................................GCAGAACTAAAATCTTTAGTGG..	22	0	7	0.14	1	1	0	0	0	0
....................................CGTGCAAGAAGGTGGTAAAATA.................................................................................................................................................................................................	22	0	8	0.13	1	0	0	1	0	0
.............................TTGGACACGTGCAACACGCTG.........................................................................................................................................................................................................	21	3	8	0.13	1	0	0	0	0	1
............................................................................................................................................................TTGACAACTGGGCGGAGGTCAACA.......................................................................	24	0	10	0.10	1	0	1	0	0	0
.............................................................................................................................................................................................................................TATTTAGCGGAAGTAAAATCT.........	21	3	12	0.08	1	0	0	0	0	1
....................................................................................................GAAAAACCTGAGCCCCACCA...................................................................................................................................	20	3	12	0.08	1	1	0	0	0	0
.....................................................................................................ACAAACCCGGGCCCCACC....................................................................................................................................	18	2	17	0.06	1	1	0	0	0	0
.........................GACCTTGGACAGGTGCGAGA..............................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	1	0
..................................CGCGTGCATGAAGGTGGAA......................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0
.................................................................................................................CACACCCCATGAAACCCCC.......................................................................................................................	19	3	20	0.05	1	0	0	0	1	0

AGCCACTTCGTTGCCTAAACCGCCTCTGTAACCTGTGCACGTTCTTCCACCATTTTATGAAATTTTTTAGATTATACGATGTGGTAAACGTTTGGTGGGACTTTTTGGGCACGGGGTGGGCTACTTTGAGGGTGATATGGTACGATTTTAGTTAATAACTGTTGACCCGCCTCCAGTTGTTATTTAAATTACTCTGCGGTTGACGTGGACAGGATTTACAATTAAATCGTCTTGATTTTAGAAATCACCGC ****************************************************************************************.............(((..........)))......................................................................************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V039 embryo	V105 male body	V106 head	V055 head
.......TCGTTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	25	0	3	43.00	129	64	60	2	0	3	0
......TTCGTTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	26	0	1	24.00	24	14	9	0	1	0	0
........CGTTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	24	0	3	23.33	70	35	27	6	0	2	0
.......CCGTTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	25	1	3	9.00	27	27	0	0	0	0	0
...........................................................................................................................CTTTGAGGGTGATATGGTACGATTT.......................................................................................................	25	0	2	5.50	11	7	3	1	0	0	0
.........GTTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	23	0	3	4.67	14	1	12	0	1	0	0
..........................................................................................................................ACTTTGAGGGTGATATGGTACGATTT.......................................................................................................	26	0	2	3.50	7	0	3	1	3	0	0
....................CGCCTCTGTAACCTGTGCACGTTCTT.............................................................................................................................................................................................................	26	0	3	3.33	10	6	4	0	0	0	0
......TTCGTTGCCTAAACCGCCTCTGTAA............................................................................................................................................................................................................................	25	0	1	3.00	3	0	3	0	0	0	0
......................................................................................................................................................................CCGCCTCCAGTTGTTATTTAAATTACTCT........................................................	29	0	1	3.00	3	3	0	0	0	0	0
.........................CTGTAACCTGTGCACGTTCTTCCAC.........................................................................................................................................................................................................	25	0	2	3.00	6	4	2	0	0	0	0
.......TCGTTGCCTAAACCGCCTCTGTAA............................................................................................................................................................................................................................	24	0	3	2.33	7	1	5	1	0	0	0
.........GTTGCCTAAACCGCCTCTGTAACCTGT.......................................................................................................................................................................................................................	27	0	3	2.33	7	0	7	0	0	0	0
......................CCTCTGTAACCTGTGCACGTTCTTCCAC.........................................................................................................................................................................................................	28	0	2	2.00	4	3	1	0	0	0	0
.....CTTCGTTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	27	0	1	2.00	2	1	1	0	0	0	0
...................CCGCCTCTGTAACCTGTGCACGTTCTT.............................................................................................................................................................................................................	27	0	3	2.00	6	4	2	0	0	0	0
..............................................................................................................................TGAGGGTGATATGGTACGATTT.......................................................................................................	22	0	9	1.56	14	5	6	0	2	1	0
..................ACCGCCTCTGTAACCTGTGCACGTTCTT.............................................................................................................................................................................................................	28	0	2	1.50	3	0	3	0	0	0	0
.......................CTCTGTAACCTGTGCACGTTCTTCCAC.........................................................................................................................................................................................................	27	0	2	1.50	3	2	1	0	0	0	0
......CTCGTTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	26	1	3	1.33	4	4	0	0	0	0	0
.............................................................................................................................TTGAGGGTGATATGGTACGATTT.......................................................................................................	23	0	9	1.11	10	1	7	1	1	0	0
....................................................................AGATTATACGATGTGGTAAACGT................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0
.............................................................................GATGTGGTAAACGTTTGGTGGGACTTT...................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................ATAACTGTTGACCCGCCTCAAGTTCTT......................................................................	27	2	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................TACTTTGAGGGTGATATGGTACGATTT.......................................................................................................	27	0	2	1.00	2	1	1	0	0	0	0
......................................................................................................................................................................CCGCCTCCAGTTGTTATTTAAATTGC...........................................................	26	1	1	1.00	1	1	0	0	0	0	0
......TTCGTTGCCTAAACCGCCTCTGTAACGT.........................................................................................................................................................................................................................	28	1	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................CTTTAGTTAATAACTGTTGACCCGCCT...............................................................................	27	1	1	1.00	1	1	0	0	0	0	0
.....CTTCGTTGCCTAAACCGCCTCTGTAA............................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................GACCCGCCTCCAGTTGTTATTTAAAT..............................................................	26	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................GTTGACCCGCCTCCAGGTGTTATTT..................................................................	25	1	1	1.00	1	0	1	0	0	0	0
........................................................................................................................CTACTTTGAGGGTGATATGGTACGATTT.......................................................................................................	28	0	2	1.00	2	2	0	0	0	0	0
......TTCGTTGCCTAAACCGCGTCTGTAAC...........................................................................................................................................................................................................................	26	1	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................ATTTAAATTACTCTGCGGTTGACGT.............................................	25	0	1	1.00	1	0	1	0	0	0	0
.............CCTAAACCGCCTCTGTAACCTGTGC.....................................................................................................................................................................................................................	25	0	3	1.00	3	2	1	0	0	0	0
......TTCGTTGCCTAAACCACCTCTGTAAC...........................................................................................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0	0
......TTCGTTGCCTAAACCGCCTCTGTAAT...........................................................................................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0	0
............................................................................................................................TTTGAGGGTGATATGGTACGATTT.......................................................................................................	24	0	2	1.00	2	1	1	0	0	0	0
.......................................................................................................................................................................................TTAAATTACTCTGCGGTTGACGTGG...........................................	25	0	1	1.00	1	0	1	0	0	0	0
........CGTTGCCTAAACCGCCTCTGTAA............................................................................................................................................................................................................................	23	0	3	1.00	3	1	2	0	0	0	0
...........................................................................................................................................................TAACTAGTGACCTGCCTCCA............................................................................	20	3	5	0.80	4	3	0	1	0	0	0
.......................CTCTGTAACCTGTGCACGTTCTTCCA..........................................................................................................................................................................................................	26	0	3	0.67	2	1	1	0	0	0	0
.....................GCCTCTGTAACCTGTGCACGTTCTT.............................................................................................................................................................................................................	25	0	3	0.67	2	0	2	0	0	0	0
.......CCGTTGCCTAAACCGCCTCTG...............................................................................................................................................................................................................................	21	1	3	0.67	2	2	0	0	0	0	0
.......TCGTTGCCTAAACCGCCTCTGTAGC...........................................................................................................................................................................................................................	25	1	3	0.67	2	2	0	0	0	0	0
............................................................................................TGGTGGGACTTTTTGGGCACGGGGT......................................................................................................................................	25	0	3	0.67	2	0	2	0	0	0	0
.......TCGTTGCCTAAACCGCCTCTGTA.............................................................................................................................................................................................................................	23	0	3	0.67	2	1	1	0	0	0	0
...................CCGCCTCTGTAACCTGTGCACGTTCT..............................................................................................................................................................................................................	26	0	3	0.67	2	1	1	0	0	0	0
.......TCGTTGCCTAAACCGCATCTGTAAC...........................................................................................................................................................................................................................	25	1	3	0.67	2	1	1	0	0	0	0
..................................................................................................................................................................................................................AGGATTTACAATTAAATCGTCTTGAT...............	26	0	3	0.67	2	1	0	1	0	0	0
.......TCGTTGCCTAAACCGCGTCTGTAAC...........................................................................................................................................................................................................................	25	1	3	0.67	2	0	2	0	0	0	0
................................................................................................................................................................................................TCTGCGGTTGACGTGGACAGGATTT..................................	25	0	5	0.60	3	0	3	0	0	0	0
..................ACCGCCTCTGTAACCTGTGCACGTACTT.............................................................................................................................................................................................................	28	1	2	0.50	1	1	0	0	0	0	0
................AAACCGCCTCTGTAACCTGTGCACGT.................................................................................................................................................................................................................	26	0	2	0.50	1	0	1	0	0	0	0
....................................................................................................................................................................................................CGGTTGACGTGGACAGGATTTACAAT.............................	26	0	2	0.50	1	0	1	0	0	0	0
.....................................................................................................................GGGCTACTTTGAGGGTGATATGGTACG...........................................................................................................	27	0	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................TGACGTGGACAGGATTTACAATTAA..........................	25	0	2	0.50	1	1	0	0	0	0	0
..................ACCGCCTCTGTAACCTGTGCACGT.................................................................................................................................................................................................................	24	0	2	0.50	1	0	1	0	0	0	0
................AAACCGCCTCTGTAACCTGTGCACGTTCT..............................................................................................................................................................................................................	29	0	2	0.50	1	1	0	0	0	0	0
...........................................................................................................................CTTTGAGGGTGATATGATACGATTT.......................................................................................................	25	1	2	0.50	1	0	0	1	0	0	0
...........................................................................................................................CTTTGAGGGTGATATGGTACGATTTT......................................................................................................	26	0	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................AACTTTGAGGGTGATATGGTACGATTT.......................................................................................................	27	1	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................CTTTGAGGGTGATATGGTACGAT.........................................................................................................	23	0	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................TGACGTGGACAGGATTTACAATTAAAT........................	27	0	2	0.50	1	0	0	0	1	0	0
.................AACCGCCTCTGTAACCTGTGCACGT.................................................................................................................................................................................................................	25	0	2	0.50	1	0	1	0	0	0	0
................AAACCGCCTCTGTAACCTGTGCACGTT................................................................................................................................................................................................................	27	0	2	0.50	1	1	0	0	0	0	0
...........................GTAACCTGTGCACGTTCTTCCACCAT......................................................................................................................................................................................................	26	0	4	0.50	2	1	1	0	0	0	0
..............CTAAACCGCCTCTGTAACCTGTGCACGT.................................................................................................................................................................................................................	28	0	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................TGACGTGGACAGGATTTACAATTGA..........................	25	1	2	0.50	1	1	0	0	0	0	0
.............CCTAAACCGCCTCTGTTACCTGTGCA....................................................................................................................................................................................................................	26	1	2	0.50	1	1	0	0	0	0	0
...........................................................................................................................CTTTGAGGGTGATATGGTACGATGT.......................................................................................................	25	1	2	0.50	1	1	0	0	0	0	0
.............CCTAAACCGCCTCTGTAACCTGTGAAC...................................................................................................................................................................................................................	27	1	2	0.50	1	1	0	0	0	0	0
.................................................................................................................................................................................................................CAGGATTTACAATTAAATCGTCTTGATT..............	28	0	2	0.50	1	1	0	0	0	0	0
...............................................................................................................................GAGGGTGATATGGTACGATTT.......................................................................................................	21	0	9	0.44	4	1	3	0	0	0	0
....................CGCCTCTGTAACCTGTGCACGTTCT..............................................................................................................................................................................................................	25	0	3	0.33	1	1	0	0	0	0	0
.......TCGTTGCCTAAACCGCCTCTGTGAC...........................................................................................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
................................................................................................AAGACTTTTTGGGCACGGGGTGGGCT.................................................................................................................................	26	2	3	0.33	1	0	1	0	0	0	0
.........GTTGCCTAAACCGCCTCTATAACCTGT.......................................................................................................................................................................................................................	27	1	3	0.33	1	0	1	0	0	0	0
.......GCGTTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
.......TCGTTGCCTAAACCGCCTCTGTAACC..........................................................................................................................................................................................................................	26	0	3	0.33	1	1	0	0	0	0	0
.......CCGTTGCCTACACCGCCTCTGTAGC...........................................................................................................................................................................................................................	25	3	3	0.33	1	1	0	0	0	0	0
.....................GCCTCTGTAACCTGTGCACGTTCTG.............................................................................................................................................................................................................	25	1	3	0.33	1	0	1	0	0	0	0
........CGTTGCCTAAACCGCCTCTGTAGC...........................................................................................................................................................................................................................	24	1	3	0.33	1	1	0	0	0	0	0
........CGTTGCCTTAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	24	1	3	0.33	1	1	0	0	0	0	0
..............................................CCACCATTTTATGAAATTTTTTAGAT...................................................................................................................................................................................	26	0	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................................................AGGATTTACAATTAAATCGTCTTGATT..............	27	0	3	0.33	1	0	0	1	0	0	0
.................................................................................................GGACTTTTTGGGCACGGGGT......................................................................................................................................	20	0	3	0.33	1	0	0	1	0	0	0
.......TCGTTGCCTAAACCGCCTCTGTAAT...........................................................................................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
.........................CTGTAACCTGTGCACGTTCTTC............................................................................................................................................................................................................	22	0	3	0.33	1	1	0	0	0	0	0
..................................................................................................GACTTTTTGGGCACGGGGTGGG...................................................................................................................................	22	0	3	0.33	1	0	1	0	0	0	0
......ATCGTTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	26	1	3	0.33	1	0	1	0	0	0	0
.......TCGTTGCCTAAACCGCCTCTGTTAC...........................................................................................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
.......TCGTTGCCTAAACCGCCTCTGAAAC...........................................................................................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................CTTTGAGGGTGATATGGTACGTTTT.......................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
.............CCTAAACCGCCTCTGTAACATGCAC.....................................................................................................................................................................................................................	25	3	3	0.33	1	1	0	0	0	0	0
.......TCGTTGCCTAAACCGTCTCTGTAAC...........................................................................................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
.........GTTGCCTAAACCGCCTCTGTAA............................................................................................................................................................................................................................	22	0	3	0.33	1	0	1	0	0	0	0
...........................................................................................TTGGTGGGACTTTTTGGGCACGGGGT......................................................................................................................................	26	0	3	0.33	1	0	1	0	0	0	0
...............................................................................TGTGGTAAACGTTTGGTGGGACTT....................................................................................................................................................	24	0	3	0.33	1	0	0	0	1	0	0
...............................................................................CGTGGTAAACGTTTGGTGGGACTTT...................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
...................CCGCCTCTGTAACCTGTGCACGTT................................................................................................................................................................................................................	24	0	3	0.33	1	0	1	0	0	0	0
....................CGCCTCTGTAACCTGTGCACGTTCGT.............................................................................................................................................................................................................	26	1	3	0.33	1	1	0	0	0	0	0
..............................................CCACCATTTTATGAAATTTTTTAGATT..................................................................................................................................................................................	27	0	3	0.33	1	1	0	0	0	0	0
.......................CTCTGTAACCTGTGCACGTTCTT.............................................................................................................................................................................................................	23	0	3	0.33	1	0	0	0	0	0	1
.........GTTGCCTAAACCGCCTCTGTTACCTG........................................................................................................................................................................................................................	26	1	3	0.33	1	0	1	0	0	0	0
.......CCGTTGCCTAAACCGCCTCTGTTAC...........................................................................................................................................................................................................................	25	2	3	0.33	1	1	0	0	0	0	0
.......................CTCTGTAACCTGTGCACGTGC...............................................................................................................................................................................................................	21	1	3	0.33	1	1	0	0	0	0	0
........CGTTGCCTAAACCGGCTCTGTAA............................................................................................................................................................................................................................	23	1	3	0.33	1	0	1	0	0	0	0
......................CCTCTGTAACCTGTGCACGTTCTT.............................................................................................................................................................................................................	24	0	3	0.33	1	0	1	0	0	0	0
...............................................................................................TGGGACTTTTTGGGCACGGGGT......................................................................................................................................	22	0	3	0.33	1	1	0	0	0	0	0
........CGTTGCCTAAACCGCCTCTGTAACC..........................................................................................................................................................................................................................	25	0	3	0.33	1	1	0	0	0	0	0
..........TTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	22	0	3	0.33	1	1	0	0	0	0	0
............GCCTAAACCGCCTCTGTAACCTGTGC.....................................................................................................................................................................................................................	26	0	3	0.33	1	0	1	0	0	0	0
................................................................................................GGGACTTTTTGGGCACGGGGT......................................................................................................................................	21	0	3	0.33	1	1	0	0	0	0	0
...............................................................................TGTGGTAAACGTTTGGTGGGACTTTT..................................................................................................................................................	26	0	3	0.33	1	0	1	0	0	0	0
.......TCGTTGCCTACACCGCCTCTGTAAC...........................................................................................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
....................................GCACGTTCTTCCACCATTTTATGAAAT............................................................................................................................................................................................	27	0	3	0.33	1	0	1	0	0	0	0
......................CCTCTGTAACCTGTGCACTT.................................................................................................................................................................................................................	20	1	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................................................................................GATTTACAATTAAATCGTCTTGATT..............	25	0	3	0.33	1	0	0	1	0	0	0
.......TCGTTGCCTAAACCGCTTCTGTAAC...........................................................................................................................................................................................................................	25	1	3	0.33	1	0	1	0	0	0	0
........CGTTGCCTAAACCGCCTCTGT..............................................................................................................................................................................................................................	21	0	3	0.33	1	1	0	0	0	0	0
...............................................................................TGTGGTAAACGTTTGGTGGGACTTT...................................................................................................................................................	25	0	3	0.33	1	1	0	0	0	0	0
.......CCGTTGCCTAAACCGCCTCTGTAAT...........................................................................................................................................................................................................................	25	2	3	0.33	1	1	0	0	0	0	0
................................................................................GTGGTAAACGTTTGGTGGGACTTTTT.................................................................................................................................................	26	0	3	0.33	1	0	1	0	0	0	0
....................CGCCTCTGTAACCTGTGCACGTTCTTCCA..........................................................................................................................................................................................................	29	0	3	0.33	1	0	1	0	0	0	0
............................................................................................................................................................................................TTACTCTGCGGTTGACGTGGACAGGATT...................................	28	0	3	0.33	1	0	1	0	0	0	0
...................................................................................GTAAACGTTTGGTGGGACTTTT..................................................................................................................................................	22	0	3	0.33	1	0	1	0	0	0	0
....................CGCCTCTGTAACCTGTGCACGTTCTTCC...........................................................................................................................................................................................................	28	0	3	0.33	1	0	1	0	0	0	0
.....................................................................................AAACGTTTGGTGGGACTTTTTGGGC.............................................................................................................................................	25	0	3	0.33	1	1	0	0	0	0	0
.......TCGTTGCCTAAACCGCCTCTGTAACCTGT.......................................................................................................................................................................................................................	29	0	3	0.33	1	0	1	0	0	0	0
.......TCGTTGCCTAAAACGCCTCTGTAAC...........................................................................................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
.......CCGTTGCCTAAACCGCCTCTGTATC...........................................................................................................................................................................................................................	25	2	3	0.33	1	1	0	0	0	0	0
.......TCTTTGCCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
.................................................................................................................................................................................................CTGCGGTTGACGTGGACAGGATTTACA...............................	27	0	4	0.25	1	1	0	0	0	0	0
........CGTTGCCTAACCCTCCTCTGTAACCT.........................................................................................................................................................................................................................	26	2	4	0.25	1	0	0	1	0	0	0
...................................TTCACGTTCTTCCACCATTTTATGAA..............................................................................................................................................................................................	26	1	4	0.25	1	1	0	0	0	0	0
................................................................................................................................AGGGTGATATGGTACGATTT.......................................................................................................	20	0	9	0.22	2	1	0	0	1	0	0
..............................................................................................................................CGAGGGTGATATGGTACGATTT.......................................................................................................	22	1	9	0.22	2	2	0	0	0	0	0
.................................................................................................................................GGGTGATATGGTACGATTT.......................................................................................................	19	0	9	0.22	2	0	2	0	0	0	0
..................................................................................................................................GGTGATATGGTACGATTT.......................................................................................................	18	0	9	0.22	2	0	2	0	0	0	0
.................................................................................................................................................................................................CTGCGGTTGACGTGGACAGGATTTAC................................	26	0	5	0.20	1	1	0	0	0	0	0
..............................................................................................................................................................................................ACTCTGCGGTTGACGTGGACAGGAT....................................	25	0	5	0.20	1	0	0	1	0	0	0
...............................................................................................................................................................................................CTCTGCGGTTGACGTGGACAGGATTT..................................	26	0	5	0.20	1	0	0	1	0	0	0
...............................................................................................................................................................................................CTCTGCGGTTGACGTGGACAGGAT....................................	24	0	5	0.20	1	0	0	1	0	0	0
..........................TGTAACCTGTGCACGTTCTTCCA..........................................................................................................................................................................................................	23	0	5	0.20	1	1	0	0	0	0	0
.............CCTAAACCGCCTCTGTAAC...........................................................................................................................................................................................................................	19	0	5	0.20	1	1	0	0	0	0	0
.....................................................................................................................................................................CCCGCCTCCAGTTGTTAT....................................................................	18	0	6	0.17	1	1	0	0	0	0	0
.......................................................TATGAACTTCTTTAGATTACAC..............................................................................................................................................................................	22	3	6	0.17	1	0	0	1	0	0	0
...............................CCTGTGCACGTTCTTCCACCATTTTAT.................................................................................................................................................................................................	27	0	7	0.14	1	1	0	0	0	0	0
.................................................................................................................................GGGTGATATGGTACGATTTTAGTTA.................................................................................................	25	0	7	0.14	1	1	0	0	0	0	0
................................CTGTGCACGTTCTTCCACCATTTTAT.................................................................................................................................................................................................	26	0	7	0.14	1	1	0	0	0	0	0
................................CTGTGCACGTTCTTCCACCATTTT...................................................................................................................................................................................................	24	0	7	0.14	1	1	0	0	0	0	0
..............................................................................................................AGGGGGTGGGCAACTTTG...........................................................................................................................	18	2	8	0.13	1	0	0	0	1	0	0
.................................TGTGCACGTTCTTCCACCATTTTAT.................................................................................................................................................................................................	25	0	8	0.13	1	0	1	0	0	0	0
.............................................................................................................................TTGAGGGTGATATGGTACGATTG.......................................................................................................	23	1	9	0.11	1	1	0	0	0	0	0
...............................................................................................................................GAGGGTGATGTGGTACGATGT.......................................................................................................	21	2	9	0.11	1	1	0	0	0	0	0
.....................................................................................................TTTTTGGGCACGGGGTGGGATA................................................................................................................................	22	1	9	0.11	1	1	0	0	0	0	0
...............................................................................................................................GAGGGTGATATGGTACGATTTTAG....................................................................................................	24	0	9	0.11	1	0	0	1	0	0	0
................................................................................................................................ATGGTGATATGGTACGATTTT......................................................................................................	21	1	9	0.11	1	1	0	0	0	0	0
................................................................................................................................AGGGTGATATGGTACGATT........................................................................................................	19	0	9	0.11	1	0	0	0	1	0	0
................................................................................................................................AGGGTGATATGGTACGACTT.......................................................................................................	20	1	9	0.11	1	0	1	0	0	0	0
...............................................................................................................................CAGGGTGATATGGTACGATTT.......................................................................................................	21	1	9	0.11	1	1	0	0	0	0	0
.................................................................................................................................AGGTGATATGGTACGATTT.......................................................................................................	19	1	9	0.11	1	0	1	0	0	0	0
...............................................................................................................................GAGGGTGATATGGTACGATTTTAGGT..................................................................................................	26	1	9	0.11	1	1	0	0	0	0	0
.............................................................................................................................TTGAGGGTGATATGGTACGAT.........................................................................................................	21	0	9	0.11	1	1	0	0	0	0	0
....................................................................................................................................TGATATGGTACGATTTTAG....................................................................................................	19	0	9	0.11	1	0	0	1	0	0	0
..............................................................................................................................TCAGGGTGATATGGTACGATTT.......................................................................................................	22	1	9	0.11	1	0	1	0	0	0	0
.............................................................................................................................TTGAGGGTGTTATGGTACGATTT.......................................................................................................	23	1	9	0.11	1	0	0	0	1	0	0
..............................................................................................................................TGAGGGTGATATGGTACGATTGT......................................................................................................	23	1	9	0.11	1	1	0	0	0	0	0
..............................................................................................................................TGAGGGTGATATGGTACGATGT.......................................................................................................	22	1	9	0.11	1	1	0	0	0	0	0
.................................................................................................................................GGGTCATATGGTACGATTT.......................................................................................................	19	1	9	0.11	1	0	1	0	0	0	0
..............................................................................................................................TGAGGGTGATATGGTACGATTTT......................................................................................................	23	0	9	0.11	1	0	1	0	0	0	0
...........................................................................................................................................................TAACTAGTGACCTGCCTCC.............................................................................	19	3	20	0.10	2	2	0	0	0	0	0
.......................................................................................................TTTGGGCACGGGGTGGGCT.................................................................................................................................	19	0	11	0.09	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_12935:21741-21991 +	dan_857	TCGGTGAAGCAACGGATTTGGCGGAGACATTGGACACGTGCAAGAAGGTGGTAAAATACTTTAAAAAATCTAATATGCTACACCATTTGCAAACCACCCTGAAAAACCCGTGCCCCACCCGATGAAACTCCCACTATACCATGCTAAAATCAATTATTGACAACTGGGCGGAGGTCAACAATAA-----ATTTAATGAGACGCC---AACTGCACCTGTCCTAAATGTTAATTTAGCAGAACTAAAATCTTTAGTGGCG
droBip1	scf7180000395524:12033-12282 +		TTGATCAGGCAACTGATTTGAGTGGAACTTTGAGCGCGTGCAAAAAGGTGTCGAATTTCTTCAAAAAGGCGAATTTGCAGCACCATTTGGATACCACCTTAAAAAACC-CTGCCCGACTCGTTGGAACTCACAGTTCAGAATGCTTAAATCCATAGTTGATAACTGGGGTGAGGTTAATAAAAT-----AATAAGTGAGACACCAACGGC---ACCTGCCCTAAATGTAAATTTCGTAGAATTAAAAGTATTAATCCTT
droKik1	scf7180000302797:17862-18115 +		TTGGGCAAACAACCGAATTGGATGAAACCGTGCACGCTTGCAAGAAAATTGTAAAATATATCAAGAAGGCGAACTTGCAACACCGGCTTCAAACCACAGTGAAAGGGGCATGTCCAACTCGCTGGAATTCTAATTATACCATGATGAAGTCTATTGTCGATAATTGGCTGACAATAACACAGTT-----GTTAAGCGAGTCTCCAGGAGCACAAAGACTTATGGACGTCAACATATCCATATTAAAGCCGTTGGTGGAG
droFic1	scf7180000453183:6762-7015 -		TCTCTGCCACCACAGAAATCGCAGAAGTGTTGGAGGCCTGCAAAAAGATATTAAAATATTTTAAAAAATCAAATTTGCAGCATCTTCTGCCCACTTCTTTAAAAAGCCAATGCCAAACACGTTGGAACTCCCATTATTATATGCTCAAATCGATCATTGATAATTGGGATGAGATGAATACCAT-----ATTAAGGCAGACTGAGCAAAGCGTGAGGTTGTTACATATTAACAAACCTGTTGTTAAATCCGTAGTCGAA
droEle1	scf7180000486526:4868-4986 -		-----------------------------------------------------------------------------------------------------------------------------AACTCCAATTATAATATGATAAAGGCCATCTAGA---------ATTAAATTAACGAACT-----TTTAAGCGAGACTCATATGACCGAAAGACTTTTTATTGCGAGTTTGGTGAATGTA-AAAGCTTATTAGAT
droRho1	scf7180000779015:9176-9429 +		TTTATGGCACCAAAGAGCTAACAGGAATCTTAGAATAGTGCAAAAAGGTGGTTAAATATTTTAAGAAAGCGAATTTACAGCATCTTTTACCTACTTCGTTAAAAAGCCAATGTCCGACAAGGTGGAACTCGCACTATAGAATGCTTAAATCTATAATCGAAAATTGGGGTGAAATGAACAGCGT-----CTTAAAAAATAATGATCACAGCCAGCTTTTGCTGCCTATAGATATAAACACCACTACAGCTCTGGTTGAA
droTak1	scf7180000415240:14599-14852 +		TTGAGGAAACCGATGAACTGGCTGATGTCTTAAGTGGTTGCAAAAAATTAGTAAAATATTTCAAAAAAGCAAATTTGCAACACAAACTCACGACTTCCTTAAAAAATCCGTGCCAAACACGTTGGAACTCGAATTATACAATGTGCAAATCAATTTTTGATAATTGGCACGAAATAAATAATAT-----ACTAACTGAAAATAATGAAAAACACAGACTGCTGCAAATTAATATAAGTACACTTAATGTCATAGTTGAG
droEug1	scf7180000409145:4550-4800 -		TTACAGAAACAACGAATCTCGATGAAACAGTGACGACATGCAAAAAAATTGTAAGGTACTTCAAGAAAGCAAACTTGCAGCATAACTTAACTACTTCTTTGAAAAATTCATGCCCAACAAGGTGGAACTCAAACTACGGAATGCTTAAGTCTATCGACGATAATTGGGTGGCTGTTAACACTAT-----ATTAAGCGAGAAAGG---GACCGAAAGATTAATGGATGTGAATAGGTCAACATTAAAAATGTTAGTTGGG
dm3	chr2RHet:220802-221055 +		TTGAAGAAACAGTTGAACTGGCTGACGTTTTATTTGGTTGCAAAAAAGTTGTCAAGTACTTCAAAAAAGCAAATTTGCAACACAAGCTAGTAACATCATTAAAAAATCCTTGTCAAACGCGGTGGAACTCCAACTATAATATGTGCAAATCTATTTTTGATAATTGGCCCGAAACTAATAATAT-----TTTAACAGAAAGCAATGAAAACCATAGACTGCAGCAAATAAACATAACTACATTAAATGTGATAGTTGAG
droSim2	node_115073:22136-22368 -		TTAACAAGACCAATGAACTCAACAAAATCGTTAAAGCATTCAAAA-AATCGTAAAGTATTTCAAAAAGTCAACTTTTCAGCATACTTTA-----------GAAGAGCGCATGTCAGACTAGATGGAACTCCAATTACAAAATGATAATGTCCATTCTGGATAAGTGGGGTAGTGTGGATAAAAT-----ATTAAGTGAGACTGA---------AATCCATATAGATATAAATAAATCAGCATTAAAAGTTGTGGTAGAT
droSec2	scaffold_0:2827635-2827879 -		TTAACGAGGCCAATGAACTCAAAAAAATTGTGAAATCATGCAAAAAAATCGTGAAGTACTGCAAAAAATCAAATTTGCAGCATACTCTAGAAACCACTTTGAAAAGCGCCTGTCCGACTAGATGGAACTCCAACTACAAAATGATGAAGTCCATTCTGGATAACTGGCGTAGTGTGGATAAAAT-----ATTAGGTGAAGCTGA---------TATCCATGTAGATTTTAATAAATCATCTTTAAAAGTTGTGGTAGAT
droYak3	v2_chrUn_5475:3094-3349 -		TTGAAGAAACAGTTGAACTGGCTGACGTTTTACTTGGTTTCAAAAAAGTTGTCAAGTACTTTAAAAAAGCAAATTTGCAACACAAGCTATTAA---CATTAAAAAATCCTTGCCAAACGCGGTGGAACTCGAATTATACTATGTGCAAATCTATTTTTTATAATTGGCCCGAAATTAATAATATATAATATTAACGGAAAGCAATGAAAACCATAGACTTCAGCAAATAAACATAACTACGTTAAATGTGATAGTTGAG
droWil2	scf2_1100000001182:2929-3182 -		TTTCTGATACCACAGAGCTCACAGAAATGTTGGAATCGTGCAAGAAGTTAGTTAAGTATTTCAAAAAAGCAAATTTGCAGCATCTGCTGACCACTTCTCTAAAAAGCCAATGCACAACACGTTGGAACTCAAATTATTTTATGCTCAAATCTATTATTGACAATTGGGGAGAGATAAATACCAC-----ATTAAAGCAGAATAATCAAATTACGCGATTGTTAAAAATTAACATACATATTGTAAAATCGCTTGTGGAA
droVir3	scaffold_12963:4043085-4043338 +		AAGACGCTTCAAGCGAACTGAAGGGAATAATTCAAAATTGTAAAAAGCTGGTAAAATATTTTAAAAATTCGAATAGCTATCACAATTTACCATCAATATTGAGAAGTCCGGGCACGACACGTTGGAATTCAAATTTTGTTATGTTCAAATTTATAACAGAGCATTGGGTAAAAATAACAAAAAT-----ACTTGCTGATTTAAATCAAGATCCTCTACTTGGTGATATTAATATAAGCACAATTCAGTCTCTACTCAAA
droMoj3	scaffold_3993:3682-3935 -		TTGACGAAGCATGTGAGCTTAAAGACATATTACACGCCTGCAAAAAAATAGTTAAGTATTTAAAAAAAGCAAGTTTGCAGCACAAGTTAAGCACAACATTAAAAAGCCCATGCCCTACTCGATGGAATTCCAATTACAATATGGTCAATTCAATAGTAAATAACTGGTCAACAATTAACAATAT-----ATTAAGTGAGACAGAGGGAGGTCAAAAACTTATAGTCGTAAATATATCCACTTTAAAAATAATATTATTA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TCGGTGAAGCAACGGATTTGGCGGAGACATTGGACACGTGCAAGAAGGTGGTAAAATACTTTAAAAAATCTAATATGCTACACCATTTGCAAACCACCCTGAAAAACCCGTGCCCCACCCGATGAAACTCCCACTATACCATGCTAAAATCAATTATTGACAACTGGGCGGAGGTCAACAATAA-----ATTTAATGAGACGCC---AACTGCACCTGTCCTAAATGTTAATTTAGCAGAACTAAAATCTTTAGTGGCG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................GGAGACATTGGACACGTGCAAGAAGG...................................................................................................................................................................................................................	26	3	5.33	16	9	5	2	0	0	0
......................GGAGACATTGGACACGTGCAAGA......................................................................................................................................................................................................................	23	3	2.67	8	6	1	0	0	1	0
......................GGAGACATTGGACACGTGCAAGAAG....................................................................................................................................................................................................................	25	3	2.00	6	4	1	0	0	1	0
..........................................................................................................................................CCATGCTAAAATCAATTATTGAC..................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................AAAAAATCTAATATGCTACACCAT.............................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....TGAAGCAACGGATTTGGCGGAGACA......................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................GAGACATTGGACACGTGCAAGAAGG...................................................................................................................................................................................................................	25	3	1.00	3	2	1	0	0	0	0
..............................................................................TACACCATTTGCAAACCACCCTGAAA...........................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................CCATGCTAAAATCAATTATTGACAAC...............................................................................................	26	1	1.00	1	0	1	0	0	0	0
...................................................TAAAATACTTTAAAAAATCTAATATGCT....................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................AACAATAA-----ATTTAATGAGACGCC---AAC.................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................TTAATGAGACGCC---AACTGCACCTGTCC......................................	27	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................TCAACAATAA-----ATTTAATGAGACGCC---....................................................	25	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................TAATGAGACGCC---AACTGCACC...........................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................ATTTAATGAGACGCC---AACTGCACCTG.........................................	26	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................A-----ATTTAATGAGACGCC---AACTGCACCTG.........................................	27	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................CTAAAATCAATTATTGACAACTGGG...........................................................................................	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................TCAATTATTGACAACTGGGCGGAGGTC...................................................................................	27	1	1.00	1	0	1	0	0	0	0
......................GGAGACATTGGACACGTGCAAGAAGGT..................................................................................................................................................................................................................	27	3	0.67	2	2	0	0	0	0	0
.........................GACATTGGACACGTGCAAGAAGGTGG................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
.......................GAGACATTGGACACGTGCAAGAAGGTGG................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
..................................................................................................................................................................................................................TGCACCTGTCCTAAATGTTAATTTAGC......................	27	2	0.50	1	0	1	0	0	0	0
..........................................................................................................CCCGTGCCCCACCCGATGAAACTCC................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
.........................................................................................................ACCCGTGCCCCACCCGATGAAACTCC................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
.........CAACGGATTTGGCGGAGACATTGG..................................................................................................................................................................................................................................	24	3	0.33	1	1	0	0	0	0	0
...............................................................................................ACCCTGAAAAACCCGTGCCCCACCCGAT........................................................................................................................................	28	3	0.33	1	1	0	0	0	0	0
TCGGTGAAGCAACGGATTTGGCG............................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	1	0
.................................................................................ACCATTTGCAAACCACCCTGAAAAACCC......................................................................................................................................................	28	3	0.33	1	0	1	0	0	0	0
..................................................................................CCATTTGCAAACCACCCTGAAAA..........................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0
TCGGTGAAGCAACGGATTTGG..............................................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0
............................................................................................ACCACCCTGAAAAACCCGTGCCCCACCC...........................................................................................................................................	28	3	0.33	1	1	0	0	0	0	0
......................GGAGACATTGGACACGTGCAAGAA.....................................................................................................................................................................................................................	24	3	0.33	1	1	0	0	0	0	0
..............................................................................................CACCCTGAAAAACCCGTGCCCCACCC...........................................................................................................................................	26	3	0.33	1	1	0	0	0	0	0
.........CAACGGATTTGGCGGAGACATTG...................................................................................................................................................................................................................................	23	3	0.33	1	1	0	0	0	0	0
..............................................................................................CACCCTGAAAAACCCGTGCCCCAC.............................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
..............................................................................................CACCCTGAAAAACCCGTGCCCCA..............................................................................................................................................	23	3	0.33	1	1	0	0	0	0	0
......................GGAGACATTGGACACGTGCAAG.......................................................................................................................................................................................................................	22	3	0.33	1	1	0	0	0	0	0
............CGGATTTGGCGGAGACATTGGACACG.............................................................................................................................................................................................................................	26	3	0.33	1	1	0	0	0	0	0
.................................................................................................CCTGAAAAACCCGTGCCCCACCCGATG.......................................................................................................................................	27	3	0.33	1	1	0	0	0	0	0
.......................GAGACATTGGACACGTGCAAGA......................................................................................................................................................................................................................	22	3	0.33	1	1	0	0	0	0	0
.................................................................................................CCTGAAAAACCCGTGCCCCACCCGAC........................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
.....................CGGAGACATTGGACACGTGCA.........................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0
................................................................................................CCCTGAAAAACCCGTGCCCCACCCGA.........................................................................................................................................	26	3	0.33	1	1	0	0	0	0	0
................TTTGGCGGAGACATTGGACACG.............................................................................................................................................................................................................................	22	4	0.25	1	1	0	0	0	0	0
..............................TGGACACGTGCAAGAAGGTGG................................................................................................................................................................................................................	21	7	0.14	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................GCAGAACTAAAATCTTTAGTGG..	22	7	0.14	1	0	1	0	0	0	0
....................................CGTGCAAGAAGGTGGTAAAATA.........................................................................................................................................................................................................	22	8	0.13	1	0	0	0	0	1	0
............................................................................................................................................................TTGACAACTGGGCGGAGGTCAACA...............................................................................	24	10	0.10	1	1	0	0	0	0	0

droBip1

TTGATCAGGCAACTGATTTGAGTGGAACTTTGAGCGCGTGCAAAAAGGTGTCGAATTTCTTCAAAAAGGCGAATTTGCAGCACCATTTGGATACCACCTTAAAAAACC-CTGCCCGACTCGTTGGAACTCACAGTTCAGAATGCTTAAATCCATAGTTGATAACTGGGGTGAGGTTAATAAAAT-----AATAAGTGAGACACCAACGGC---ACCTGCCCTAAATGTAAATTTCGTAGAATTAAAAGTATTAATCCTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGGGCAAACAACCGAATTGGATGAAACCGTGCACGCTTGCAAGAAAATTGTAAAATATATCAAGAAGGCGAACTTGCAACACCGGCTTCAAACCACAGTGAAAGGGGCATGTCCAACTCGCTGGAATTCTAATTATACCATGATGAAGTCTATTGTCGATAATTGGCTGACAATAACACAGTT-----GTTAAGCGAGTCTCCAGGAGCACAAAGACTTATGGACGTCAACATATCCATATTAAAGCCGTTGGTGGAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCTCTGCCACCACAGAAATCGCAGAAGTGTTGGAGGCCTGCAAAAAGATATTAAAATATTTTAAAAAATCAAATTTGCAGCATCTTCTGCCCACTTCTTTAAAAAGCCAATGCCAAACACGTTGGAACTCCCATTATTATATGCTCAAATCGATCATTGATAATTGGGATGAGATGAATACCAT-----ATTAAGGCAGACTGAGCAAAGCGTGAGGTTGTTACATATTAACAAACCTGTTGTTAAATCCGTAGTCGAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-----------------------------------------------------------------------------------------------------------------------------AACTCCAATTATAATATGATAAAGGCCATCTAGA---------ATTAAATTAACGAACT-----TTTAAGCGAGACTCATATGACCGAAAGACTTTTTATTGCGAGTTTGGTGAATGTA-AAAGCTTATTAGAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTATGGCACCAAAGAGCTAACAGGAATCTTAGAATAGTGCAAAAAGGTGGTTAAATATTTTAAGAAAGCGAATTTACAGCATCTTTTACCTACTTCGTTAAAAAGCCAATGTCCGACAAGGTGGAACTCGCACTATAGAATGCTTAAATCTATAATCGAAAATTGGGGTGAAATGAACAGCGT-----CTTAAAAAATAATGATCACAGCCAGCTTTTGCTGCCTATAGATATAAACACCACTACAGCTCTGGTTGAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTGAGGAAACCGATGAACTGGCTGATGTCTTAAGTGGTTGCAAAAAATTAGTAAAATATTTCAAAAAAGCAAATTTGCAACACAAACTCACGACTTCCTTAAAAAATCCGTGCCAAACACGTTGGAACTCGAATTATACAATGTGCAAATCAATTTTTGATAATTGGCACGAAATAAATAATAT-----ACTAACTGAAAATAATGAAAAACACAGACTGCTGCAAATTAATATAAGTACACTTAATGTCATAGTTGAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTACAGAAACAACGAATCTCGATGAAACAGTGACGACATGCAAAAAAATTGTAAGGTACTTCAAGAAAGCAAACTTGCAGCATAACTTAACTACTTCTTTGAAAAATTCATGCCCAACAAGGTGGAACTCAAACTACGGAATGCTTAAGTCTATCGACGATAATTGGGTGGCTGTTAACACTAT-----ATTAAGCGAGAAAGG---GACCGAAAGATTAATGGATGTGAATAGGTCAACATTAAAAATGTTAGTTGGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTGAAGAAACAGTTGAACTGGCTGACGTTTTATTTGGTTGCAAAAAAGTTGTCAAGTACTTCAAAAAAGCAAATTTGCAACACAAGCTAGTAACATCATTAAAAAATCCTTGTCAAACGCGGTGGAACTCCAACTATAATATGTGCAAATCTATTTTTGATAATTGGCCCGAAACTAATAATAT-----TTTAACAGAAAGCAATGAAAACCATAGACTGCAGCAAATAAACATAACTACATTAAATGTGATAGTTGAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................AACATAACTACATTAAATGTGATAGT....	26	2	18.00	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	5	0	0	6	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	10	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TAAACATAACTACATTAAATGTGATAGT....	28	2	7.50	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................AATAAACATAACTACATTAAATGTGA........	26	2	4.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TAAACATAACTACATTAAATGTGA........	24	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CATAACTACATTAAATGTGATAGT....	24	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................ACATAACTACATTAAATGTGATAGT....	25	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................AAACATAACTACATTAAATGTGATAGTT...	28	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TAAACATAACTACATTAAATGTGATA......	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................ACATAACTACATTAAATGTGAT.......	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................CATAACTACATTAAATGTGAT.......	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CATAACTACATTAAATGTGATAGTT...	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................TACATTAAATGTGATAGTT...	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTAACAAGACCAATGAACTCAACAAAATCGTTAAAGCATTCAAAA-AATCGTAAAGTATTTCAAAAAGTCAACTTTTCAGCATACTTTA-----------GAAGAGCGCATGTCAGACTAGATGGAACTCCAATTACAAAATGATAATGTCCATTCTGGATAAGTGGGGTAGTGTGGATAAAAT-----ATTAAGTGAGACTGA---------AATCCATATAGATATAAATAAATCAGCATTAAAAGTTGTGGTAGAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATATAGA..................................	26	2	115.00	230	0	9	194	14	0	0	0	0	0	0	11	0	2	0	0	0	0
.......................................................................................................................................................................................................................................TAAATCAGCATTAAAAGTTGTGGTAGA.	27	1	46.00	46	0	0	0	0	0	0	15	2	23	3	1	0	2	0	0	0	0
..........................................................................................................................................................................................................................................ATCAGCATTAAAAGTTGTGGTAGA.	24	1	41.00	41	0	0	0	0	0	0	0	14	6	21	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATATAGG..................................	26	2	9.50	19	0	1	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TGGAACTCCAATTACAAAATGATAATGTC............................................................................................................	29	1	7.00	7	0	0	0	0	0	0	2	0	2	0	0	0	3	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATATA....................................	24	2	6.50	13	0	0	0	2	8	0	0	0	0	0	0	0	2	1	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATATAG...................................	25	2	6.00	12	0	0	4	2	0	0	0	0	0	0	1	0	5	0	0	0	0
...................................................................................................................................................................................................TGAGACTGA---------AATCCATATAGATAT...............................	24	1	6.00	6	0	0	0	0	0	0	4	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AAT...........................................	17	2	6.00	12	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0
...................................................................................................................................................................................................TGAGACTGA---------AATCCATATAGAT.................................	22	2	5.00	10	0	0	0	0	0	0	4	0	6	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TAAGTGAGACTGA---------AATCCATATAGA..................................	25	2	4.50	9	0	1	0	0	0	0	0	0	2	0	0	0	6	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATA......................................	22	2	4.00	8	0	0	1	0	4	0	0	0	0	0	2	0	1	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCA........................................	20	2	4.00	8	0	0	0	0	6	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................TAAGTGAGACTGA---------AATCCATATAG...................................	24	2	4.00	8	0	0	0	0	2	0	0	0	0	0	0	0	6	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AA............................................	16	2	3.50	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATAT.....................................	23	2	3.00	6	0	0	0	1	4	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................TAAATCAGCATTAAAAGTT.........	19	1	3.00	3	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0
......................................................................................................................TAGATGGAACTCCAATTACAAAATGA...................................................................................................................	26	2	2.50	5	0	0	3	0	0	0	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCAT.......................................	21	2	2.50	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.................................................................................................................................................................................................................................TATAAATAAATCAGCATTAAAAGTTG........	26	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................AGACTAGATGGAACTCCAATTACAAAA......................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..................................................................................TACTTTA-----------GAAGAGCGCATGTCAGACT............................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................TGAGACTGA---------AATCCATATAGA..................................	21	2	2.00	4	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................ATCAGCATTAAAAGTTGTGGTAGAT	25	1	2.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................TACAAAATGATAATGTCCATTCTGGA...................................................................................................	26	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................AATAAATCAGCATTAAAAGTTGTGGTAGA.	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TTCTGGATAAGTGGGGTAGTGTGG..................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................TGAGACTGA---------AATCCATATAGATATTT.............................	26	1	2.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................T-----ATTAAGTGAGACTGA---------AATCCATATAGA..................................	28	2	2.00	4	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0
.......................................................................................................................................................................................................................................TAAATCAGCATTAAAAGTTGTGGTAGAA	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GACTAGATGGAACTCCAAT.............................................................................................................................	19	2	2.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................................TAGATGGAACTCCAATTACAAAATG....................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATATAGAT.................................	27	2	1.50	3	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................TGAGACTGA---------AATCCATATAGATATAAAT...........................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CTAGATGGAACTCCAATTACAAAATG....................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................GGAACTCCAATTACAAAATGATAATGTC............................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGAGACTGA---------AATCCATATAGATATAA.............................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.TAACAAGACCAATGAACTCAACAAAATCGT....................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATATAGAA.................................	27	2	1.00	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................AAATAAATCAGCATTAAAAGTT.........	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................GATAATGTCCATTCTGGATAAGTGGGGT.........................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TAGATGGAACTCCAATTACAAAATGATA.................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................GGAACTCCAATTACAAAATGATAAT...............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................TCAGCATACTTTA-----------GAAGAGCGCATG...................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TAAATCAGCATTAAAAGTTGTG......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................T-----ATTAAGTGAGACTGA---------AATCCATC......................................	24	2	1.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.............................................................................CAGCATACTTTA-----------GAAGAGCGCATGTCAA...............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................AGCATACTTTA-----------GAAGAGCGCATG...................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................TCAGACTAGATGGAACTCCAATTA...........................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TAAATAAATCAGCATTAAAAGTT.........	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................TACTTTA-----------GAAGAGCGCATGTCAGACTA...........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................TCAGACTAGATGGAACTCCAATTACAAAA......................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............AACTCAACAAAATCGTTAAAGCATT...........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TAATGTCCATTCTGGATAAGTGGG...........................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------A.............................................	15	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................AAATAAATCAGCATTAAAAGTTGTGG.....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................TCAGACTAGATGGAACTCCAATT............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................TTCAGCATACTTTA-----------GAAGAGCGCATG...................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............GAACTCAACAAAATCGTTAAAGCATT...........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TAAATCAGCATTAAAAGTTGTGG.....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................TGGGGTAGTGTGGAT................................................................................	15	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATATAGATA................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TAAGTGGGGTAGTGTGGATAAAAT-----......................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGAGACTGA---------AATCCATATAGATATT..............................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCC.........................................	19	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CTAGATGGAACTCCAATTACAAAATGA...................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.....................................................................................................................................TTACAAAATGATAATGTCCATTCTGGA...................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GAGACTGA---------AATCCATATAGATATAAA............................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TCCAATTACAAAATGATAATGTCCA..........................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................ATCAGCATTAAAAGTTGTGGTA...	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................TA-----------GAAGAGCGCATGTCAGACTAGATG.......................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TGAACTCAACAAAATCGTTAAAGCATT...........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GTGAGACTGA---------AATCCATATAGATATAAA............................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................ATTAAAAGTTGTGGTAGA.	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................TGAGACTGA---------AATCCATATAGATATAAAA...........................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TAAGTGAGACTGA---------AATCCATATA....................................	23	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................TAAGTGAGACTGA---------AATCCATATAGATA................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................ATTAAGTGAGACTGA---------AATCCATATA....................................	25	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TAAATCAGCATTAAAAGTTGTGGTA...	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................TTCTGGATAAGTGGGGTAGTGTGGA.................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGAGACTGA---------AATCCATATAGATATAAA............................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TAGATGGAACTCCAATTACAAAATGAA..................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATATAA...................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................ATTAAGTGAGACTGA---------AAT...........................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................CTGA---------AATCCATATAGA..................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................GATGGAACTCCAATTACAAAATGAT..................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................TAAAGTATTTCAAAAAGTCA............................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................TAAAGTATTTCAAAAAGT..............................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................GGAACTCCAATTACAAAATGA...................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................TGGAACTCCAATTACAAAATG....................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................AAGTGAGACTGA---------AATCCATATAGATT................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................AAGTGAGACTGA---------AATCCATATAG...................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................TGGAACTCCAATTACAAAATGAT..................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTCCAATTACAAAATGA...................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................TAGATGGAACTCCAATTACAAAA......................................................................................................................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGAGACTGA---------AATCCATATAGATT................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TAAGTGAGACTGA---------AATCCATA......................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................T-----ATTAAGTGAGACTGA---------AATCCATA......................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GGAACTCCAATTACAAAATGAT..................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AT-----ATTAAGTGAGACTGA---------AATCCATA......................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................ATGGAACTCCAATTACAAAATGA...................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TAAATCAGCATTAAAAGA..........	18	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................GGAACTCCAATTACAAAATG....................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................TAAAGTATTTCAAAAAGTC.............................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................AAGTGAGACTGA---------AAT...........................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................ACTAGATGGAACTCCAATTACAAAC......................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................TAGATGGAACTCCAATTACAAAAA.....................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATC..........................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................TCGTAAAGTATTTCAAAAAGTCAA...........................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAAGTGAGACTGA---------AATCCATAGG....................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ATGGAACTCCAATTACAAAATGAT..................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................T-----ATTAAGTGAGACTGA---------AAT...........................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................TAAAGTATTTCAAAAA................................................................................................................................................................................................	16	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................ACTGA---------AATCCATATAGT..................................	17	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................TAAAGTATTTCAAAA.................................................................................................................................................................................................	15	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTAACGAGGCCAATGAACTCAAAAAAATTGTGAAATCATGCAAAAAAATCGTGAAGTACTGCAAAAAATCAAATTTGCAGCATACTCTAGAAACCACTTTGAAAAGCGCCTGTCCGACTAGATGGAACTCCAACTACAAAATGATGAAGTCCATTCTGGATAACTGGCGTAGTGTGGATAAAAT-----ATTAGGTGAAGCTGA---------TATCCATGTAGATTTTAATAAATCATCTTTAAAAGTTGTGGTAGAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................................TACAAAATGATGAAGTCCATTCTGGA...................................................................................................	26	3	0.33	1	1	0	0	0
.......................................................................................................................................ACAAAATGATGAAGTCCATTCTGGA...................................................................................................	25	3	0.33	1	1	0	0	0
..............................................................................................................TGTCCGACTAGATGGAACTCCAA..............................................................................................................................	23	3	0.33	1	1	0	0	0

droYak3

TTGAAGAAACAGTTGAACTGGCTGACGTTTTACTTGGTTTCAAAAAAGTTGTCAAGTACTTTAAAAAAGCAAATTTGCAACACAAGCTATTAA---CATTAAAAAATCCTTGCCAAACGCGGTGGAACTCGAATTATACTATGTGCAAATCTATTTTTTATAATTGGCCCGAAATTAATAATATATAATATTAACGGAAAGCAATGAAAACCATAGACTTCAGCAAATAAACATAACTACGTTAAATGTGATAGTTGAG

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droWil2

TTTCTGATACCACAGAGCTCACAGAAATGTTGGAATCGTGCAAGAAGTTAGTTAAGTATTTCAAAAAAGCAAATTTGCAGCATCTGCTGACCACTTCTCTAAAAAGCCAATGCACAACACGTTGGAACTCAAATTATTTTATGCTCAAATCTATTATTGACAATTGGGGAGAGATAAATACCAC-----ATTAAAGCAGAATAATCAAATTACGCGATTGTTAAAAATTAACATACATATTGTAAAATCGCTTGTGGAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................CACTTCTCTAAAAAGCCAATGCAC................................................................................................................................................	24	3	1.00	3	0	3	0	0	0
..............................................................................................TTCTCTAAAAAGCCAATGCACAACACGT.........................................................................................................................................	28	3	0.67	2	0	0	0	2	0
.............................................................................................................ATGCACAACACGTTGGAACTCAAAT.............................................................................................................................	25	3	0.67	2	0	2	0	0	0
...............................................................................................TCTCTAAAAAGCCAATGCACAACACG..........................................................................................................................................	26	3	0.33	1	0	1	0	0	0
.......TACCACAGAGCTCACAGAAATG......................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0
...........ACAGAGCTCACAGAAATGTTGGAAA...............................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0
..........CACAGAGCTCACAGAAATGTTGGAAT...............................................................................................................................................................................................................................	26	3	0.33	1	0	0	1	0	0
..................................................................................................................................................................................TACCAC-----ATTAAAGCAGAATAATCAAA..................................................	26	3	0.33	1	0	1	0	0	0
........................AAATGTTGGAATCGTGCAAGAAG....................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0
..................................................................................................................................................AAATCTATTATTGACAATTGGGGA.........................................................................................	24	3	0.33	1	0	1	0	0	0
............................................................................................................................GAACTCAAATTATTTTATGCT..................................................................................................................	21	3	0.33	1	0	1	0	0	0
................GCTCACAGAAATGTTGGAATCGTGC..........................................................................................................................................................................................................................	25	3	0.33	1	0	0	1	0	0
...........................TGTTGGAATCGTGCAAGAAGTTAGTT..............................................................................................................................................................................................................	26	3	0.33	1	0	0	0	1	0
..............................................................................................................................ACTCAAATTATTTTATGCTCAAATC............................................................................................................	25	3	0.33	1	0	1	0	0	0
...................................................................................................................................AATTATTTTATGCTCAAATCT...........................................................................................................	21	3	0.33	1	0	1	0	0	0
.........................................................................................................................................TTTATGCTCAAATCTATTATTG....................................................................................................	22	3	0.33	1	0	1	0	0	0
...............................................................................................................................................CTCAAATCTATTATTGACAATTGG............................................................................................	24	3	0.33	1	0	1	0	0	0
..................TCACAGAAATGTTGGAATCGTGCAAG.......................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	1	0
.TTCTGATACCACAGAGCTCACAGAAA........................................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	1	0
.............................................................................................................ATGCACAACACGTTGGAACTCA................................................................................................................................	22	3	0.33	1	0	1	0	0	0
...........................................................................................CACTTCTCTAAAAAGCCAATGCA.................................................................................................................................................	23	3	0.33	1	0	1	0	0	0
..............................................................................................TTCTCTAAAAAGCCAATGCACAACACG..........................................................................................................................................	27	3	0.33	1	0	0	0	1	0
...........................TGTTGGAATCGTGCAAGAAGTTAGTC..............................................................................................................................................................................................................	26	3	0.33	1	0	0	0	1	0
.......................................GCAAGAAGTTAGTTAAGTATTTC.....................................................................................................................................................................................................	23	3	0.33	1	0	0	0	1	0
...................................................................................................................................AATTATTTTATGCTCAAATCTAT.........................................................................................................	23	3	0.33	1	0	1	0	0	0
..........................................................................................................CCAATGCACAACACGTTGGA.....................................................................................................................................	20	3	0.33	1	0	1	0	0	0
.............................................................................................................ATGCACAACACGTTGGAACTC.................................................................................................................................	21	3	0.33	1	0	0	0	1	0
.............AGAGCTCACAGAAATGTTGGAA................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	1
.............................................................................................CTTCTCTAAAAAGCCAATGCACAA..............................................................................................................................................	24	3	0.33	1	0	1	0	0	0
......ATACCACAGAGCTCACAGAAATG......................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0
TTTCTGATACCACAGAGCTCACAGAAA........................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0
..........................................................................................................................................................................................................................................ACATATTGTAAAATCGCTTGTGG..	23	3	0.33	1	0	1	0	0	0

droVir3

AAGACGCTTCAAGCGAACTGAAGGGAATAATTCAAAATTGTAAAAAGCTGGTAAAATATTTTAAAAATTCGAATAGCTATCACAATTTACCATCAATATTGAGAAGTCCGGGCACGACACGTTGGAATTCAAATTTTGTTATGTTCAAATTTATAACAGAGCATTGGGTAAAAATAACAAAAAT-----ACTTGCTGATTTAAATCAAGATCCTCTACTTGGTGATATTAATATAAGCACAATTCAGTCTCTACTCAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................TTTACCATCAATATTGAGAAGTCCGGG...................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................AACAGAGCATTGGGTAAAAATAACA................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TCAAGATCCTCTACTTGGTGATAT...............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................TAAAAATTCGAATAGCTATCACAATT............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTGACGAAGCATGTGAGCTTAAAGACATATTACACGCCTGCAAAAAAATAGTTAAGTATTTAAAAAAAGCAAGTTTGCAGCACAAGTTAAGCACAACATTAAAAAGCCCATGCCCTACTCGATGGAATTCCAATTACAATATGGTCAATTCAATAGTAAATAACTGGTCAACAATTAACAATAT-----ATTAAGTGAGACAGAGGGAGGTCAAAAACTTATAGTCGTAAATATATCCACTTTAAAAATAATATTATTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................ACATATTACACGCCTGCAAAAAAATAG................................................................................................................................................................................................................	27	4	0.50	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................TAGTCGTAAATATATCCACTTTAAAAA...........	27	7	0.43	3	3	0	0	0	0	0
......................................................................................................................TCGATGGAATTCCAATTACAATATGG...................................................................................................................	26	5	0.40	2	2	0	0	0	0	0
........................ACATATTACACGCCTGCAAAAAAATA.................................................................................................................................................................................................................	26	5	0.40	2	1	0	0	0	1	0
.............................................................................................CAACATTAAAAAGCCCATGCCC................................................................................................................................................	22	5	0.20	1	1	0	0	0	0	0
........................ACATATTACACGCCTGCAAAAAAAT..................................................................................................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
......................................................................................TTAAGCACAACATTAAAAAGCCC......................................................................................................................................................	23	6	0.17	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................TATAGTCGTAAATATATCCACTTTA...............	25	6	0.17	1	0	0	0	0	1	0
........................ACATATTACACGCCTGCAAAAAA....................................................................................................................................................................................................................	23	6	0.17	1	0	0	0	0	1	0
......................................................................................TTAAGCACAACATTAAAAAGCCCATGC..................................................................................................................................................	27	6	0.17	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................TAGTCGTAAATATATCCACTTTAAAAAA..........	28	7	0.14	1	1	0	0	0	0	0
...................TAAAGACATATTACACGCCTGCA.........................................................................................................................................................................................................................	23	7	0.14	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................TAGTCGTAAATATATCCACTTTAA..............	24	7	0.14	1	1	0	0	0	0	0

dan_857

scaffold_12935:21791-21941 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-1.4	-1.4	-1.4