ID:

dan_853

 Coordinate:

scaffold_12929:3175116-3175266 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dana\GF22274-cds]; exon [dana_GLEANR_6248:2]; intron [Dana\GF22274-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGCAAAAACCAACAACTATGCCACGGAGGCCACCATACAAGTGAATCGGGTGAGCATAAAAATATATACTATAAATACATATATTATATACCTAATGCGTTACATTAGCATACAAAAAATACTAAAAAAAAAAAAAGGATTACATAATGCGCTTTCTGGCAAAGAGATAGCAATAGTTACTATGTGTATGTGTTTTGAGACATCTGTATGTGTGTGTGTGCGTGCACAGGGTTGCAATTATGCCGGTCAA
**************************************************...................((..((((((((((((.....((((((((.....)))))).......................................(((..(((((.....)))))..)))...))......))))))))))))..)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 M044
female body
 M058
embryo
 V055
head
 V105
male body		 V039
embryo
...............ACTATGCCACGGAGGCCACCATACAAGT................................................................................................................................................................................................................ 28 0 1 2.00 2 0 1 1 0 0 0
...............ACTATGCCACGGAGGCCACC........................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0
...............ACTATGCCACGGAGGCCACCA....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........AACAACTATGCCACGGAGGCCACCATA..................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.......AACCAACAACTATGCCACGGAGGCCACC........................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0
...................TGCCACGGAGGCCACCATACA................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
........ACCAACAACTATGCCACGGAGGCCACCA....................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..............AACTATGCCACGGAGGCCACCATACA................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.......................ACGGAGGCCACCATACAAGTG............................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
........ACCAACAACTATGCCACGGAGGC............................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0
..............AACTATGCCACGGAGGCCACC........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0
............ACAACTATGCCACGGAGGCCACCAT...................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0
....................................................................................................................................................................................................................GTGTGTGTGCGTGCACAGGGTTGC............... 24 0 1 1.00 1 0 0 0 1 0 0
................CTATGCCACGGAGGCCACCATACA................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0
...............ACTATGCCACGGAGGCCACCATA..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................CACCATACAAGTGAATCGGCCC...................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
..............AACTATGCCACGGAGGCCACCATA..................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...............ACTATGCCACGGAGGCCACCC....................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
...........AACAACTATGCCACGGAGGCCAC......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
.......AACCAACAACTATGCCACTGAGTCCACC........................................................................................................................................................................................................................ 28 2 1 1.00 1 1 0 0 0 0 0
.................TATGCCACGGAGGCCACCATAC.................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
....AAAAACCAACAACTATGC..................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
................TTATGCCACGGAGGCCACCGTT..................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0
.........................................................................................................................ACTAAAAAGAAAAAAAGGA............................................................................................................... 19 1 5 0.20 1 0 0 0 0 1 0
....................................................................................................................................................................................................................GTGAGTGTGCTTCCACAGGG................... 20 3 8 0.13 1 0 1 0 0 0 0
.............................................................................................TAATGGGTTACAATAGCA............................................................................................................................................ 18 2 14 0.07 1 0 0 0 0 0 1

Anti-sense strand reads

ACCGTTTTTGGTTGTTGATACGGTGCCTCCGGTGGTATGTTCACTTAGCCCACTCGTATTTTTATATATGATATTTATGTATATAATATATGGATTACGCAATGTAATCGTATGTTTTTTATGATTTTTTTTTTTTTCCTAATGTATTACGCGAAAGACCGTTTCTCTATCGTTATCAATGATACACATACACAAAACTCTGTAGACATACACACACACACGCACGTGTCCCAACGTTAATACGGCCAGTT
**************************************************...................((..((((((((((((.....((((((((.....)))))).......................................(((..(((((.....)))))..)))...))......))))))))))))..)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V039
embryo
 M058
embryo
 V055
head
..........GTTGTTGATACGGTGCGT............................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0
...............................................................................................................................TTTTTTTTTTCCTAATGT.......................................................................................................... 18 0 2 0.50 1 0 1 0
.............................................................................TGTATATAACATAGGGATT........................................................................................................................................................... 19 2 3 0.33 1 0 1 0
.................................................................................................................................................................TTTCTCTATCGTTATCCAG....................................................................... 19 2 6 0.17 1 1 0 0
....................................................................................AATATATGGATCGCGCACT.................................................................................................................................................... 19 3 6 0.17 1 0 0 1
..CGTTGGTGGTTCTTGATACGG.................................................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0
.............................................................................................................................................................................................ACACAAAACGCTGTAGATG........................................... 19 3 20 0.05 1 0 1 0
....TGTTTGGTTGTTGAGACGGA................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12929:3175066-3175316 + dan_853 TGGCAAAAACC---------AACAACTATGCCACGGAGGCCACCATACAAGTGAATCGGGTGAGCATAA-----AAAT-----A------------------------TATACTATAAATACATATATTATAT--ACCTAATGC-GTTACATTAGCATACAAA----AA--ATACT--------AA------AAA-AA---AA-----A-A----AAGGATTACATAAT---GCGCTTT-CTGGCAAAGAGATAGCAA-TAGTT---------------------ACTA-----------------T---GTGTATGTGTTTTGAGACATCTGTATGT------------GTGTGTGT-------------------------------GC-GTGCACAGGGTTGCAATT-A-------------------------------TGCCGGTCAA
droBip1 scf7180000395568:5552-5741 - TGGCAAAAACC---------AACAACTATGCCACGGAGGCCACCATACAAGTGAATCGGGTGAGCATAT-----ATAT------------------------------------------------------------------------------------------A--ATACAAAAAAA--------AATACCAA---AAACTTT-CA----AAGGATTACATAAT---GCGCTTT-CTGCCAAAGAGATAGCAA-TAGTT---------------------ACTA-----------------T---GTGTATGTG----------------TTAG---------TG-TGTGT--------------------------------------GCACAGGGTTGCATTA-A------------------------------ATGCCGGTCAA
droKik1 scf7180000302469:107228-107428 + TTACGAAAACC---------AACAATTATGCCACGGAAGCCACCGTTAAAGTGAATCGGGTAAGTAAAT-----TGTA-----A------------------------ATATTA----TCTAT--TA---------TC-------------------------T-----------------ATGCAGAAAAATACCAG------------A----AAGGATTACATAAT---GCGC----------------TAGCAA-CTGTT---------------------AACT-----------TTTGCGTGC-CTGTGTGTG----------------TGTGCGTG--------TTTGTGC--------------------------GAGCACG-GTGCACAGGGTTGCATTT-T-------------------------------AGCCGGTCAA
droFic1 scf7180000453775:87997-88226 - TATCAAAAACC---------AACAATTATGCCACGGAGGCCACGATTTCAGTGAATCGGGTAAGAACTGTAACATATC-----T------------------------------GTATGTTACTATA---------TCTAATG-------------------------G------A--AGCAAGAA----AAGAGAAA---AA-----A-G----TAGTATTACATAAT---GCGCTTT-CTGCCA----GATAGCGG-CGGTT---------------------AATAGG---TT-TCAATAGTGA---GTGTGTGTG----------------ATT-----------------TGA-------------------------------AACATGCACAGGGTTGCATTT-GCGTGTTTTTA------------------TTTTGCCGGTCAA
droEle1 scf7180000491011:1709422-1709622 - TTTCAAAATCG---------AACAATTATGCCACGGAGGCCACCATCTCAGTGAACCGGGTAAGTAAGA-----TATA-----T----------------------ATTGAATA----TTAACTATA---------TA-------------------------TG--AA--ATACAAAAAAAAAAA------AGA-AA---AA-----A-G----AAAGATTACATAAT---GCGCTTT-CTGGCA----GATAGCAA-CGGTT---------------------CATT-----------TT--GGTA-TG----------------------------------------TGTGTGT-------------------------------AAAA--TGCAGGGTTGCGTTT-T-------------------------------TGCCGGTCAA
droRho1 scf7180000778083:162697-162887 + CTTCAAAATCG---------AACAATTATGCCACGGAGGCCACCATCTCAGTGAATCGGGTAAGAACTA-----TAAG-----T----------------------AAAT--------TTAACTGCA---------TA-------------------------TG--AT--AT--------ACGAC------GAA----AAAA-----ATA----TAGTATTACATAAT---GCGCTTT-TTGCCA----GATAGCAA-CTGTT---------------------AATT-----------TTT-GGTA-TG----------------------------------------TGTGTGT-------------------------------AAAA--TGCAGGGTTGCGTTT-T-------------------------------TGCCGGTCAA
droBia1 scf7180000301703:99514-99738 - TGTCGAGGAGC---------AACAACTATGCCACGGAGGCCACCGTGCAAGTGAACCGGGTGAGTGCTG-----TGCG-----G----------------------GAAGGGGG----GT---GGCA---------AG-------------------------GCGGCAAGGCGGCAAGGTGGCAA------GGT-CG---CA----CG-G----TGGCGTTACATAAT---GGG--------------------CAA-CGGCG---------------------AACAGGG-GGCCCCG-GGCCC---------------------------------------------CATGCGC-------------------------------GC-A--TGCAGGGTTGCATTC-GCGTGGTTCTCCCGTCCGCCCGTCCGCCCGTCCGCCTGTCCG
droTak1 scf7180000414746:81170-81387 + TCTCAAAGACC---------AATAACTATGCCACGGAGGCCACCATTCAAGTGAATCGGGTAAATATAC-----TATA-----G------------------------TAAATA----GGTATTATA---------GC-------------------------TG--AG--------AAGC----C------GAA----AAAA-----A-G----GGGGATTACATAAT---GCGCTTT-CTGCCA----GATAGCAA-CGGTT---------------------AATGGGG-GAT-CTGTCAGTGT---GTGTGTG----------------------------------TGTGTGT-------------------------------AA-ATGTGCAGGGTTGCATTT-GCGTGTTTCCA------------------TTTTGCCGGTCAA
droEug1 scf7180000409548:374363-374586 + TTTCAAAAACC---------AACAATTATGCCACGGAGGCCACCATTCAAGTGAATCGGGTATGTATCA-----TATACTATAT------------------------CTAACA----G------------------------------------------------AA--ATACTAAAAAAAGAA------GAC----AAAA-----ATA----TAAGATTACATAAT---GCGCTTT-TTGCCA----GATAGCAA-CGGTT---------------------AATGGG---AT-TCATTAGTGT---GTA-GTTTG----------------TG--------------TGCGTGG-------------------------------AG-G--TGCAGGGTTGCATTTGGCGTGTTTTCTTA----------------ATTTGCCGGTCAA
dm3 chrX:4596876-4597079 + TTTCGAAAACC---------AACAATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGGTGCGTATTA-----TAGC-----A------------------------------TTAAGTACTTGTA---------AC-------------------------TCAGGAAAATTCAAAAGTCGGAA------GGG-AA---AA-----A-A----TACGGTTACATAAT---GCGATTT-TCGCCA----GATAGCAAACGGTT--------------------------------------TGCGT---GTGTGTGTG----------------TG--------------TGTGTGT-------------------------------AA-G--TGCAGGGTTGCATTT---------------------------------TGCCGGTCAA
droSim2 x:4287316-4287529 + dsi_3426 TTTCGAAAACC---------AACAATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGGTGCGTATTA-----TAGC-----T------------------------------CTAAGTACATGTA---------AC-------------------------TCAGGAAAATCCAAAAGTCGGAA------GGA-AAAAAAA-----A-A----TACGGTTACATAAT---GCGATTT-TTGCCA----GATAGCAGACGGTA---------------------AATGGTG-TAT-TCGTTTGCGT---GTG--------------------------------------TGTGTGT-------------------------------AA-G--TGCAGGGTTGCATTT---------------------------------TGCCGGTCAA
droSec2 scaffold_4:2133383-2133590 - TTTCGAAAACC---------AACAATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGGTGCGTATTA-----TAGC-----A------------------------------CTAAGTACATGTA---------AC-------------------------TCAGAAATATCCAAAAGTCGGAA------GGA-AA---AA-----A-A----TACGGTTACATAAT---GCGATTT-TTGCCA----GATAGCAAACGGTA---------------------AATGGGG-GTATTCGTTTGCG---------------------------------------------TGTGTGT-------------------------------AA-G--TGCAGGGTTGCATTT---------------------------------TGCCGGTCAA
droYak3 X:3843579-3843782 - TTTCAAAAACC---------AACAATTATGCCACGGAGGCCACCGTACAAGTGAATCGGGTGCGTATTA-----TATA-----G------------------------CA----TAAAGCACCTGTA---------TC-------------------------TC----------------AGGAA------GAA----AA---------A----AACGGTTACATAAT---GAGATTT-CTGCCA----GATAGCAA-CGGTT---------------------AATGGGG--AT-TCGTTTGCGT---GTGCATGTG----------------CGTG---------CG-CGTGTGT-------------------------------AA-G--TGCAGGGTTGCATTT---------------------------------TGCCGGTCAA
droEre2 scaffold_4690:1973795-1973984 + TTTCAAAAACC---------AACAATTATGCCACGGAAGCCACCATTCAAGTGAATCGGGTGCGTATTA-----AAAC-----A------------------------------TAAAGTAATTGTA---------TC-------------------------T----------------TTGGAA------GAA----AAAA-----A-A----TACGGTTACATAAT---GCGATTT-CTGCCA----GATAGCAA-CGGTT---------------------AATGGGG-GAC-TCGTTTGCG---------------------------------------------TGTGTGT-------------------------------AA-G--TGCAGGGTTGCATTT---------------------------------TGCCGGTCAA
dp5 XL_group1a:7011407-7011594 + TGGCCAAAACC---------AACAACTATGCCACGGAGGCTACGGTGCAAGTGAATCGCGTAAGTGTTG-----GAGG-----A------------------------TCGACG----GAAATTAAA---------TC-------------------------AA--------------ATTGAAA------TCA----C---------CA----ACGTATTACATAAT---GCGCTTTACTACCA----GATAACAA-AAGTG------------------------------------------TGT-GTGTGTGTG----------------TGTGCGTGTTCTG--GTGTGTGT-------------------------------GA-GTGCACAGGGTTGCA----------------------------------------------
droPer2 scaffold_13:1616065-1616239 + TGGCCAAAACC---------AACAACTATGCCACGGAGGCTACGGTGCAAGTGAATCGCGTAAGTGTTG-----GAGG-----A------------------------TCGACG----GAAATTA-----------AA-------------------------TC-----------------------------A----C---------CA----ACGGATTACATAAT---GCGCTTTACTACCA----GATAGCAA-AAGTG------------------------------------------T---GTGTGTGTG----------------TGTGCGTGTTCTG--GTGTGTGT-------------------------------GA-GTGCACAGGGTTGCA----------------------------------------------
droWil2 scf2_1100000004909:4504913-4505193 - dwi_2713 TCAGCAAAACCAGCACCAACAACAACTATGCCACGGAAGCTACAATCGAAGTGAATCGTGTAAGTCTCC-----AGA------T-CATCGCCCCTCTCACTCACACACA----------------CACTCTCTCTGCGCGATCC-T---------CTGCCAAA----AA--GTGAT------AAAA------GAA----AAA--------AAAAAATTGATTACATAATTTTGAATTTG-TTGTGA----CCTAACAA-CGGTGTTTTTCTCCTAAACGGTCTGTTATGGTGCCAT-CTGTTTGTCT---GTGTGTGTG----------------TGTG---------CG-TGTGTGTGT--------------------------CGCTA-ATGCACAGGGTTGCATTG-----------------------------------------AT
droVir3 scaffold_12970:4137188-4137415 - dvi_13106 TCGCAAAGACC---------AACAATTATGCCACGGAAGCGACCGTGCAGGTGAATCGAGTAAGTACAT-----AAAG-----A-----------------------GA-T-------ACACCAACA---------ACTAATCC-GTTCT---AG-------------------------CTAAAA------GAA----AAA--------ACGCTAGTGATTACATAAT---GCGT-----------------------------------------------------------------CTGTGT---GTGTGTGTG----------------TTTG---------CA-TGCGTGCGTCCGTCCGTCCGTTCATTTTTGTATGACCTGA-TTGCACAGAGTTGCATTT-TCGCGTTTTGG--------------------TCGTCGATTAG
droMoj3 scaffold_6473:8708018-8708249 - TCGCAAAGACC---------AATAATTATGCCACCGAAGCGACCGTGCAAGTGAATCGAGTGAGTATTT-----TAAG-----GCAGCAGTAACAATCACCCACCCACCCC-------ACATCACCA---------ACGAATCGAGTTCT---AG-------------------------CAAGCA------GAA----AGAA-----ATT----GCCGATTACATAAT---GTAT----------------------------------------------------G-----------CTGGTGT---GTGTCTGTG----------------TGTG---------CG-TGTGTGCGTCCGTCTGTC----CATTAGTGTATGACCTGA-TTGCGCAGTGTTGCATTT-G-------------------------------CGC-------
droGri2 scaffold_15203:9812550-9812606 + TCGCAAAGACC---------AACAACTATGCCACGGAGGCGACCGTGCAGGTTAATCGGGTAAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TGGCAAAAACC---------AACAACTATGCCACGGAGGCCACCATACAAGTGAATCGGGTGAGCATAA-----AAAT-----A------------------------TATACTATAAATACATATATTATAT--ACCTAATGC-GTTACATTAGCATACAAA----AA--ATACT--------AA------AAA-AA---AA-----A-A----AAGGATTACATAAT---GCGCTTT-CTGGCAAAGAGATAGCAA-TAGTT---------------------ACTA-----------------T---GTGTATGTGTTTTGAGACATCTGTATGT------------GTGTGTGT-------------------------------GC-GTGCACAGGGTTGCAATT-A-------------------------------TGCCGGTCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................ACTATGCCACGGAGGCCACCATACAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2812.002110000
........................ACTATGCCACGGAGGCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................ACTATGCCACGGAGGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
....................AACAACTATGCCACGGAGGCCACCATA......................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.......AACC---------AACAACTATGCCACGGAGGCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
............................TGCCACGGAGGCCACCATACA....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
........ACC---------AACAACTATGCCACGGAGGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.......................AACTATGCCACGGAGGCCACCATACA....................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
................................ACGGAGGCCACCATACAAGTG................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........ACC---------AACAACTATGCCACGGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.......................AACTATGCCACGGAGGCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................ACAACTATGCCACGGAGGCCACCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100
..............................................................................................................................................................................................................................................................................................................................................................GTGTGTGT-------------------------------GC-GTGCACAGGGTTGC...............................................2411.001000100
.........................CTATGCCACGGAGGCCACCATACA....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
........................ACTATGCCACGGAGGCCACCATA......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
........................................CACCATACAAGTGAATCGGCCC.......................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.......................AACTATGCCACGGAGGCCACCATA......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
........................ACTATGCCACGGAGGCCACCC........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
....................AACAACTATGCCACGGAGGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..........................TATGCCACGGAGGCCACCATAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....AAAAACC---------AACAACTATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
TGGCAAAAACC---------AACAACTATGCCACGGAGGCCACCATACAAGTGAATCGGGTGAGCATAT-----ATAT------------------------------------------------------------------------------------------A--ATACAAAAAAA--------AATACCAA---AAACTTT-CA----AAGGATTACATAAT---GCGCTTT-CTGCCAAAGAGATAGCAA-TAGTT---------------------ACTA-----------------T---GTGTATGTG----------------TTAG---------TG-TGTGT--------------------------------------GCACAGGGTTGCATTA-A------------------------------ATGCCGGTCAASizeHit CountTotal NormTotal
No Reads
droKik1
TTACGAAAACC---------AACAATTATGCCACGGAAGCCACCGTTAAAGTGAATCGGGTAAGTAAAT-----TGTA-----A------------------------ATATTA----TCTAT--TA---------TC-------------------------T-----------------ATGCAGAAAAATACCAG------------A----AAGGATTACATAAT---GCGC----------------TAGCAA-CTGTT---------------------AACT-----------TTTGCGTGC-CTGTGTGTG----------------TGTGCGTG--------TTTGTGC--------------------------GAGCACG-GTGCACAGGGTTGCATTT-T-------------------------------AGCCGGTCAASizeHit CountTotal NormTotal
No Reads
droFic1
TATCAAAAACC---------AACAATTATGCCACGGAGGCCACGATTTCAGTGAATCGGGTAAGAACTGTAACATATC-----T------------------------------GTATGTTACTATA---------TCTAATG-------------------------G------A--AGCAAGAA----AAGAGAAA---AA-----A-G----TAGTATTACATAAT---GCGCTTT-CTGCCA----GATAGCGG-CGGTT---------------------AATAGG---TT-TCAATAGTGA---GTGTGTGTG----------------ATT-----------------TGA-------------------------------AACATGCACAGGGTTGCATTT-GCGTGTTTTTA------------------TTTTGCCGGTCAASizeHit CountTotal NormTotal
No Reads
droEle1
TTTCAAAATCG---------AACAATTATGCCACGGAGGCCACCATCTCAGTGAACCGGGTAAGTAAGA-----TATA-----T----------------------ATTGAATA----TTAACTATA---------TA-------------------------TG--AA--ATACAAAAAAAAAAA------AGA-AA---AA-----A-G----AAAGATTACATAAT---GCGCTTT-CTGGCA----GATAGCAA-CGGTT---------------------CATT-----------TT--GGTA-TG----------------------------------------TGTGTGT-------------------------------AAAA--TGCAGGGTTGCGTTT-T-------------------------------TGCCGGTCAASizeHit CountTotal NormTotal
No Reads
droRho1
CTTCAAAATCG---------AACAATTATGCCACGGAGGCCACCATCTCAGTGAATCGGGTAAGAACTA-----TAAG-----T----------------------AAAT--------TTAACTGCA---------TA-------------------------TG--AT--AT--------ACGAC------GAA----AAAA-----ATA----TAGTATTACATAAT---GCGCTTT-TTGCCA----GATAGCAA-CTGTT---------------------AATT-----------TTT-GGTA-TG----------------------------------------TGTGTGT-------------------------------AAAA--TGCAGGGTTGCGTTT-T-------------------------------TGCCGGTCAASizeHit CountTotal NormTotal
No Reads
droBia1
TGTCGAGGAGC---------AACAACTATGCCACGGAGGCCACCGTGCAAGTGAACCGGGTGAGTGCTG-----TGCG-----G----------------------GAAGGGGG----GT---GGCA---------AG-------------------------GCGGCAAGGCGGCAAGGTGGCAA------GGT-CG---CA----CG-G----TGGCGTTACATAAT---GGG--------------------CAA-CGGCG---------------------AACAGGG-GGCCCCG-GGCCC---------------------------------------------CATGCGC-------------------------------GC-A--TGCAGGGTTGCATTC-GCGTGGTTCTCCCGTCCGCCCGTCCGCCCGTCCGCCTGTCCGSizeHit CountTotal NormTotal
No Reads
droTak1
TCTCAAAGACC---------AATAACTATGCCACGGAGGCCACCATTCAAGTGAATCGGGTAAATATAC-----TATA-----G------------------------TAAATA----GGTATTATA---------GC-------------------------TG--AG--------AAGC----C------GAA----AAAA-----A-G----GGGGATTACATAAT---GCGCTTT-CTGCCA----GATAGCAA-CGGTT---------------------AATGGGG-GAT-CTGTCAGTGT---GTGTGTG----------------------------------TGTGTGT-------------------------------AA-ATGTGCAGGGTTGCATTT-GCGTGTTTCCA------------------TTTTGCCGGTCAASizeHit CountTotal NormTotal
No Reads
droEug1
TTTCAAAAACC---------AACAATTATGCCACGGAGGCCACCATTCAAGTGAATCGGGTATGTATCA-----TATACTATAT------------------------CTAACA----G------------------------------------------------AA--ATACTAAAAAAAGAA------GAC----AAAA-----ATA----TAAGATTACATAAT---GCGCTTT-TTGCCA----GATAGCAA-CGGTT---------------------AATGGG---AT-TCATTAGTGT---GTA-GTTTG----------------TG--------------TGCGTGG-------------------------------AG-G--TGCAGGGTTGCATTTGGCGTGTTTTCTTA----------------ATTTGCCGGTCAASizeHit CountTotal NormTotal
No Reads
dm3
TTTCGAAAACC---------AACAATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGGTGCGTATTA-----TAGC-----A------------------------------TTAAGTACTTGTA---------AC-------------------------TCAGGAAAATTCAAAAGTCGGAA------GGG-AA---AA-----A-A----TACGGTTACATAAT---GCGATTT-TCGCCA----GATAGCAAACGGTT--------------------------------------TGCGT---GTGTGTGTG----------------TG--------------TGTGTGT-------------------------------AA-G--TGCAGGGTTGCATTT---------------------------------TGCCGGTCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................AATTATGCCACGGAGGCCACCGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................25118.001800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000621000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CCACGGAGGCCACCGTTCAAGTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAATTATGCCACGGAGGCCACCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATGCCACGGAGGCCACCGTTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................AATTATGCCACGGAGGCCACCG........................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................AATTATGCCACGGAGGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
.....AAAACC---------AACAATTATGCCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GGCCACCGTTCAAGTGAATC............................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCCACGGAGGCCACCGTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACAATTATGCCACGGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
................................................................................................................................................................................................................................................................................................................................................G--------------TGTGTGT-------------------------------AA-G--TGCAGGG...................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
.........................................ACCGTTCAAGTGAATCGG..........................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.................................................AGTGAATCGGGTGCGTATTA-----T..........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.........................TTATGCCACGGAGGCCACCGTTCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................TGCGTATTA-----TAGC-----A------------------------------TTAT...............................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................AACAATTATGCCACGGAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TAGCAAACGGTT--------------------------------------TGCGT---G..............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.................................CGGAGGCCACCGTTCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TGTGTGT-------------------------------AA-G--TGCAGGGTTGCATT............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................ATGCCACGGAGGCCACCGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATTATGCCACGGAGGCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......AAACC---------AACAATTATGCCACG..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATGCCACGGAGGCCACCGTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................AATTATGCCACGGAGGCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TACTTGTA---------AC-------------------------TCAGGAAAATTC......................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AAAACC---------AACAATTATGCCACGGA................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CACCGTTCAAGTGAATCGG..........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATTATGCCACGGAGGCCACCG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................ATGCCACGGAGGCCACCGTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................TATGCCACGGAGGCCACCGTTCAAGTG................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CGTTCAAGTGAATCGGGTGCG.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CACGGAGGCCACCGTTCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CACGGAGGCCACCGTTCAAGTGAATC............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................CCACGGAGGCCACCGTTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................AAATTCAAAAGTCGGAA------GGG-A................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATGCCACGGAGGCCACCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TATGCCACGGAGGCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTTGCATTT---------------------------------TGCCG.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................CGGAGGCCACCGTTCAAGTGAATC............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATTATGCCACGGAGGCCACCGTTCAAGTG................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TATGCCACGGAGGCCACCGTTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ATTCAAAAGTCGGAA------GGG-AA---A...........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TATGCCACGGAGGCCACCGTTCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................TGCCACGGAGGCCACCGTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GCCACCGTTCAAGTGAATCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CACGGAGGCCACCGTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TATGCCACGGAGGCCACCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GCCACCGTTCAAGTGAATCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AACC---------AACAATTATGCCACGGC................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTATGCCACGGAGGCCACCGTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CGGAGGCCACCGTTCAAGTG................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTATGCCACGGAGGCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CACGGAGGCCACCGTTCAAGTGAATCGG..........................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...............................................CAAGTGAATCGGGTGCGTATT.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................CCGTTCAAGTGAATCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TGTGTGTG----------------TG--------------TGTGTGT-------------------------------AA-G--T.........................................................21200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000004000
.........................................................................................................................................................................................................................................................................................................................TGTGTG----------------TG--------------TGTGTGT-------------------------------AA-G--TG........................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000002000
.......................................................................................................................................................................................................................................................................................................................TGTGTGTG----------------TG--------------TGTGTGT-------------------------------AA-G--..........................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
................................................................................................................................................................................................................................................................................................................CGT---GTGTGTGTG----------------TG--------------TGTGT.................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................T---GTGTGTGTG----------------TG--------------TGTGTGT-------------------------------AA-.............................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................GTGTGTGTG----------------TG--------------TGTGTGT-------------------------------AA-G--..........................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
..................................................................................................................................................................................................................................................................................................................T---GTGTGTGTG----------------TG--------------TGTGTGT-------------------------------AA-G--..........................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000
......................................................................................................................................................................................................................................................................TT--------------------------------------TGCGT---GTGTGTGTG----------------TG--------------TGT...................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
..................................................................................................................................................................................................................................................................................................................T---GTGTGTGTG----------------TG--------------TGTGTGT-------------------------------................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TT--------------------------------------TGCGT---GTGTGTGTG----------------T.....................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GT---GTGTGTGTG----------------TG--------------TGTGTGT-------------------------------A...............................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................T--------------------------------------TGCGT---GTGTGTGTG----------------TG--------------TGTC..................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................................................................................................................................TGCGT---GTGTGTGTG----------------TG--------------TG....................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TT--------------------------------------TGCGT---GTGTGTGTG----------------TG--------------T.....................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GCGT---GTGTGTGTG----------------TG--------------TGTGTG................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................................................................................TT--------------------------------------TGCGT---GTGTGTGTG----------------TG--------------TG....................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................T--------------------------------------TGCGT---GTGTGTGTG----------------TG--------------T.....................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CGT---GTGTGTGTG----------------TG--------------TGTG..................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
TTTCGAAAACC---------AACAATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGGTGCGTATTA-----TAGC-----T------------------------------CTAAGTACATGTA---------AC-------------------------TCAGGAAAATCCAAAAGTCGGAA------GGA-AAAAAAA-----A-A----TACGGTTACATAAT---GCGATTT-TTGCCA----GATAGCAGACGGTA---------------------AATGGTG-TAT-TCGTTTGCGT---GTG--------------------------------------TGTGTGT-------------------------------AA-G--TGCAGGGTTGCATTT---------------------------------TGCCGGTCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTTGCATTT---------------------------------TGCCGGTCT.2211.00110000000000000000
....GAAAACC---------AACAATTATGCCACGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
..TCGAAAACC---------AACAATTATGCCACGGA................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
......................................................ATCGGGTGCGTATTA-----TAGC-----T------------------------------C..................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..TCGAAAACC---------AACAATTATGCCACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.......................................................................................................................................................................................GAA------GGA-AAAAAAA-----A-A----TA............................................................................................................................................................................................................................................1711.00100000000001000000
............................TGCCACGGAGGCCACCGTTCAAGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
..TCGAAAACC---------AACAATTATGCCACG..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
............................................................................GC-----T------------------------------CTAAGTACATGTA---------AC-------------------------TCAG..............................................................................................................................................................................................................................................................................................2211.00100010000000000000
.......................................................................................................................................................................................GAA------GGA-AAAAAAA-----A-A----TAT...........................................................................................................................................................................................................................................18160.06100000000001000000
droSec2
TTTCGAAAACC---------AACAATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGGTGCGTATTA-----TAGC-----A------------------------------CTAAGTACATGTA---------AC-------------------------TCAGAAATATCCAAAAGTCGGAA------GGA-AA---AA-----A-A----TACGGTTACATAAT---GCGATTT-TTGCCA----GATAGCAAACGGTA---------------------AATGGGG-GTATTCGTTTGCG---------------------------------------------TGTGTGT-------------------------------AA-G--TGCAGGGTTGCATTT---------------------------------TGCCGGTCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................ATTATGCCACGGAGGCCACCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020020
..............................................................................................................................................................................................................................................................GCAAACGGTA---------------------AATGGGG-GTAT............................................................................................................................................................2111.0010100
..............................................................................................................................................................................................................................................................GCAAACGGTA---------------------AATGGGG-G...............................................................................................................................................................1811.0010001
..........................TATGCCACGGAGGCCACCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.TTCGAAAACC---------AACAATTATGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
...CGAAAACC---------AACAATTATGCCACGGA................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
......................................GCCACCGTTCAAGTGAATCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.................................................................................................................................................................................................................................................................................................................................................................TGTGT-------------------------------AA-G--TGCAGGGTTGCA..............................................2011.0010100
droYak3
TTTCAAAAACC---------AACAATTATGCCACGGAGGCCACCGTACAAGTGAATCGGGTGCGTATTA-----TATA-----G------------------------CA----TAAAGCACCTGTA---------TC-------------------------TC----------------AGGAA------GAA----AA---------A----AACGGTTACATAAT---GAGATTT-CTGCCA----GATAGCAA-CGGTT---------------------AATGGGG--AT-TCGTTTGCGT---GTGCATGTG----------------CGTG---------CG-CGTGTGT-------------------------------AA-G--TGCAGGGTTGCATTT---------------------------------TGCCGGTCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................CGGAGGCCACCGTACAAGTGAATCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
..........................................................................................................................................................................................................................................................GATAGCAA-CGGTT---------------------AATGGGG--A..............................................................................................................................................................2111.00100000010000
...........................................CGTACAAGTGAATCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
.....................ACAATTATGCCACGGAGGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.......................AATTATGCCACGGAGGCCACCGTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001000000
..........................TATGCCACGGAGGCCACCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000
..........................................CCGTACAAGTGAATCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.......................AATTATGCCACGGAGGCCACCGTACAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
......................CAATTATGCCACGGAGGCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................................................................................................................................................................................................CGTG---------CG-CGTGTGT-------------------------------AA-G--TGGCT.....................................................21150.07100000100000
droEre2
TTTCAAAAACC---------AACAATTATGCCACGGAAGCCACCATTCAAGTGAATCGGGTGCGTATTA-----AAAC-----A------------------------------TAAAGTAATTGTA---------TC-------------------------T----------------TTGGAA------GAA----AAAA-----A-A----TACGGTTACATAAT---GCGATTT-CTGCCA----GATAGCAA-CGGTT---------------------AATGGGG-GAC-TCGTTTGCG---------------------------------------------TGTGTGT-------------------------------AA-G--TGCAGGGTTGCATTT---------------------------------TGCCGGTCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................TATGCCACGGAAGCCACCATTCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000110
........................ATTATGCCACGGAAGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................2112.0021000010
........................ATTATGCCACGGAAGCCACCATTCA....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.........................TTATGCCACGGAAGCCACCATTCA....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.........................TTATGCCACGGAAGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
......................CAATTATGCCACGGAAGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
......................................GCCACCATTCAAGTGAATCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
....................AACAATTATGCCACGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
.......................AATTATGCCACGGAAGCCACCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
........ACC---------AACAATTATGCCACGGAAGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
..........................................CCATTCAAGTGAATCGGGT........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.......AACC---------AACAATTATGCCACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.......AACC---------AACAATTATGCCACGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
...CAAAAACC---------AACAATTATGCCACGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000010
.......AACC---------AACAATTATGCCACGGAAGCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
.............................GCCACGGAAGCCACCATTCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
dp5
TGGCCAAAACC---------AACAACTATGCCACGGAGGCTACGGTGCAAGTGAATCGCGTAAGTGTTG-----GAGG-----A------------------------TCGACG----GAAATTAAA---------TC-------------------------AA--------------ATTGAAA------TCA----C---------CA----ACGTATTACATAAT---GCGCTTTACTACCA----GATAACAA-AAGTG------------------------------------------TGT-GTGTGTGTG----------------TGTGCGTGTTCTG--GTGTGTGT-------------------------------GA-GTGCACAGGGTTGCA----------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......AACC---------AACAACTATGCCACGGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020100010000
..............................CCACGGAGGCTACGGTGCAAGTG................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........................ACTATGCCACGGAGGCTACGGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..............................CCACGGAGGCTACGGTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
............................TGCCACGGAGGCTACGGTGCAAGTGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
....................AACAACTATGCCACGGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................CACGGAGGCTACGGTGCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......AAACC---------AACAACTATGCCACGGAGGCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001000000
....................................AGGCTACGGTGCAAGTGAATCGCC.........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
....................AACAACTATGCCACGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...........................ATGCCACGGAGGCTACGGTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....CAAAACC---------AACAACTATGCCACGGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
............................TGCCACGGAGGCTACGGTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
...............................CACGGAGGCTACGGTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................ACTATGCCACGGAGGCTACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
.....AAAACC---------AACAACTATGCCACGGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
TGGCCAAAACC---------AACAACTATGCCACGGAGGCTACGGTGCAAGTGAATCGCGTAAGTGTTG-----GAGG-----A------------------------TCGACG----GAAATTA-----------AA-------------------------TC-----------------------------A----C---------CA----ACGGATTACATAAT---GCGCTTTACTACCA----GATAGCAA-AAGTG------------------------------------------T---GTGTGTGTG----------------TGTGCGTGTTCTG--GTGTGTGT-------------------------------GA-GTGCACAGGGTTGCA----------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........ACC---------AACAACTATGCCACGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................CTATGCCACGGAGGCTACGGTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...........................ATGCCACGGAGGCTACGGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................ACAACTATGCCACGGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.................................CGGAGGCTACGGTGCAAGTGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
......................................GCTACGGTGCAAGTGAATCGCCCC.......................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
......................................................................................................................................................................................................................................................................TG------------------------------------------T---GTGTGTGTG----------------TGTGCGTGTT............................................................................................................22200.051000001
droWil2
TCAGCAAAACCAGCACCAACAACAACTATGCCACGGAAGCTACAATCGAAGTGAATCGTGTAAGTCTCC-----AGA------T-CATCGCCCCTCTCACTCACACACA----------------CACTCTCTCTGCGCGATCC-T---------CTGCCAAA----AA--GTGAT------AAAA------GAA----AAA--------AAAAAATTGATTACATAATTTTGAATTTG-TTGTGA----CCTAACAA-CGGTGTTTTTCTCCTAAACGGTCTGTTATGGTGCCAT-CTGTTTGTCT---GTGTGTGTG----------------TGTG---------CG-TGTGTGTGT--------------------------CGCTA-ATGCACAGGGTTGCATTG-----------------------------------------ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................AACAACTATGCCACGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2013.00300210
........................ACTATGCCACGGAAGCTACAATCGAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200
.......................AACTATGCCACGGAAGCTACA.........................................................................................................................................................................................................................................................................................................................................................................................................................2112.00201100
.....................ACAACTATGCCACGGAAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
...................CAACAACTATGCCACGGAAGCTACA.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.......AACCAGCACCAACAACAACTATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
.......................................CTACAATCGAAGTGAATCGTCC........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...................CAACAACTATGCCACGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.......................................CTACAATCGAAGTGAATCGT..........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.........................................................................................................CACA----------------CACTCTCTCTGCGCGAT.......................................................................................................................................................................................................................................................................................................................2111.00100001
...............................CACGGAAGCTACAATCGAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.........................................ACAATCGAAGTGAATCGT..........................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
......................CAACTATGCCACGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..............................CCACGGAAGCTACAATCGA....................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.....................................................................................................CACACACA----------------CACTCTCTCTGCGCGATC......................................................................................................................................................................................................................................................................................................................2611.00100010
..................ACAACAACTATGCCACGGAAGCTACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
..........................TATGCCACGGAAGCTACAATCGAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
........................ACTATGCCACGGAAGCTACAATCG.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
......................CAACTATGCCACGGAAGCTACAATCGA....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.........................CTATGCCACGGAAGCTACAATCGAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
....................AACAACTATGCCACGGAAGCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001
...........................ATGCCACGGAAGCTACAATCG.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.........................CTATGCCACGGAAGCTACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
........................ACTATGCCACGGAAGCTACA.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.............................GCCACGGAAGCTACAATCGAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..............................CCACGGAAGCTACAATCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.................................................................................................................................................................................................................................................................................................................CT---GTGTGTGTG----------------TGTG---------CG-TGTG..................................................................................................21200.05101000
droVir3
TCGCAAAGACC---------AACAATTATGCCACGGAAGCGACCGTGCAGGTGAATCGAGTAAGTACAT-----AAAG-----A-----------------------GA-T-------ACACCAACA---------ACTAATCC-GTTCT---AG-------------------------CTAAAA------GAA----AAA--------ACGCTAGTGATTACATAAT---GCGT-----------------------------------------------------------------CTGTGT---GTGTGTGTG----------------TTTG---------CA-TGCGTGCGTCCGTCCGTCCGTTCATTTTTGTATGACCTGA-TTGCACAGAGTTGCATTT-TCGCGTTTTGG--------------------TCGTCGATTAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................CAATTATGCCACGGAAGCGACCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
........................ATTATGCCACGGAAGCGACCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................AATTATGCCACGGAAGCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................AA--------ACGCTAGTGATTACATAAT---C............................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
.......GACC---------AACAATTATGCCACGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
.........................TTATGCCACGGAAGCGACCGTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
...................................GAAGCGACCGTGCAGGTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
........................ATTATGCCACGGAAGCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................T---GTGTGTGTG----------------TTTG---------CA-TGCG..................................................................................................2020.501000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................GCGT-----------------------------------------------------------------CTGTGT---GTGTGTGTG----------------TT....................................................................................................................2160.171001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AT---GCGT-----------------------------------------------------------------CTGTGT---GTGTGT.........................................................................................................................................18100.101000000000000000000000000000000000000000000000000000000000001000
droMoj3
TCGCAAAGACC---------AATAATTATGCCACCGAAGCGACCGTGCAAGTGAATCGAGTGAGTATTT-----TAAG-----GCAGCAGTAACAATCACCCACCCACCCC-------ACATCACCA---------ACGAATCGAGTTCT---AG-------------------------CAAGCA------GAA----AGAA-----ATT----GCCGATTACATAAT---GTAT----------------------------------------------------G-----------CTGGTGT---GTGTCTGTG----------------TGTG---------CG-TGTGTGCGTCCGTCTGTC----CATTAGTGTATGACCTGA-TTGCGCAGTGTTGCATTT-G-------------------------------CGC-------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................ATTATGCCACCGAAGCGACCGTGCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...................................GAAGCGACCGTGCAAGTG................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.........................TTATGCCACCGAAGCGACCGTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
....................................AAGCGACCGTGCAAGTGAATC............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
........................ATTATGCCACCGAAGCGACCGTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................AG-----GCAGCAGTAACAATCACCC...............................................................................................................................................................................................................................................................................................................................................................2111.001000010
.........................TTATGCCACCGAAGCGACCGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.......................AATTATGCCACCGAAGCGACCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................TATGCCACCGAAGCGACCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................CCACCGAAGCGACCGTGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................AATAATTATGCCACCGAAGCGACCGTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
............................TGCCACCGAAGCGACCGTGCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droGri2
TCGCAAAGACC---------AACAACTATGCCACGGAGGCGACCGTGCAGGTTAATCGGGTAAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................AACTATGCCACGGAGGCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110

Generated: 05/17/2015 at 11:21 PM