ID:

dan_84

 Coordinate:

scaffold_13340:19296132-19296189 +

 Confidence:

confident

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.1 -14.8 -14.4

Flybase annnotation

intron [Dana\GF18705-in]; CDS [Dana\GF18705-cds]; utr5 [utr5_minus_10448]

No Repeatable elements found

Sense Strand Reads

GAGATCCCTCCACTAAACAATACAAGCAACAAACAAACAAACAAGCACAGGTGAGTAGGTGGGTCAGATGAAGTCACTGAACTAATCGATTGCCCCACTTTCTTTCAGTGTACATACAACTGTAACGAATTTAAACAAAAATCCAAAGCAGAAGCAAG

**************************************************..(((.(((((((.(((.((((((......)))..))).))).))))))).)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044

female body

 V106

head

 M058

embryo

 V105

male body		 V055

head

 V039

embryo
.......................................................................................GATTGCCCCACTTTCTTTCAG.................................................. 21 0 1 113.00 113 92 10 8 1 2 0
.......................................................................................GATTGCCCCACTTTCTTTCAGT................................................. 22 0 1 70.00 70 44 16 7 2 0 1
.......................................................................................GATTGCCCCACTTTCTTTCAGA................................................. 22 1 1 49.00 49 40 0 8 0 1 0
..................................................GTGAGTAGGTGGGTCAGATGA....................................................................................... 21 0 1 33.00 33 3 22 0 2 4 2
.......................................................................................GATTGCCCCACTTTCTTTCA................................................... 20 0 1 20.00 20 17 1 0 0 2 0
..................................................GTGAGTAGGTGGGTCAGATG........................................................................................ 20 0 1 11.00 11 1 8 0 1 1 0
........................................................................................ATTGCCCCACTTTCTTTCAG.................................................. 20 0 1 9.00 9 9 0 0 0 0 0
.......................................................................................GATTGCCCGACTTTCTTTCAG.................................................. 21 1 1 6.00 6 6 0 0 0 0 0
........................................................................................ATTGCCCCACTTTCTTTCAGA................................................. 21 1 1 5.00 5 5 0 0 0 0 0
.......................................................................................GATTGCCCGACTTTCTTTCAGT................................................. 22 1 1 4.00 4 4 0 0 0 0 0
..................................................GTGAGTAGGTGGGTCAGAT......................................................................................... 19 0 1 3.00 3 0 3 0 0 0 0
..................................................GTGAGTAGGTGGGTCAGATGAAG..................................................................................... 23 0 1 3.00 3 1 1 0 1 0 0
..................................................GTGAGTAGGTGGGTCAGATGAA...................................................................................... 22 0 1 3.00 3 0 2 0 1 0 0
........................................................................................ATTGCCCCACTTTCTTTCAGT................................................. 21 0 1 3.00 3 3 0 0 0 0 0
.......................................................................................GATTGCCCCACTTTCTTTCAGTT................................................ 23 1 1 3.00 3 3 0 0 0 0 0
..................................................GTGAGTAGGTGGGTCAGATGAAGTCAC................................................................................. 27 0 1 3.00 3 0 3 0 0 0 0
..................................................GTGAGTAGGTGGGTCAGATGAAGT.................................................................................... 24 0 1 2.00 2 0 0 1 1 0 0
.......................................................................................GATTGCCCCACTTTCTTTCAGC................................................. 22 1 1 2.00 2 0 0 2 0 0 0
.......................................................................................GATTTCCCCACTTTCTTTCAGA................................................. 22 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................GATTGCCCAACTTTCTTTCAG.................................................. 21 1 1 2.00 2 2 0 0 0 0 0
......................................................................................CGATTGCCCCACTTTCTTTCAG.................................................. 22 0 1 2.00 2 1 1 0 0 0 0
.......................................................................................GATTGCCCCACTTTCTTTCAGAA................................................ 23 2 1 2.00 2 1 0 1 0 0 0
.......................................................................................GATTGCCCCACTTTCTTTA.................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTAGGTTGGTCAGATG........................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................GGTTGCCCCACTTTCTTTCAGT................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTAGGGGGGTCAGATGA....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTAGGTGGGTCAGATGAT...................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.....................................................................................TCGATTGCCCCACTTTCTTTCAGT................................................. 24 0 1 1.00 1 0 0 1 0 0 0
.....................................................AGTAGGTGGGTCAGATGAA...................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................TCGATTGCCCCACTTTCTTTCA................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................GATTGCCCGACTTTCTTTCAGC................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................TCGTTTGCCCCACTTTCTTTCAGT................................................. 24 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTAGGTCGGTCAGATGT....................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0
.......................................................................................GATTGCCCCACTTTCTTTC.................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTAGGTGGGTCAGATGA....................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTAGGTGGGTCAGATGAA...................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
..................................................GTTAGTAGGTGGGTCAGATGA....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................AATCCAAAGCAGAAGCAAG 19 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................GATTGCCCCAATTTCTTTCAGT................................................. 22 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................GATTGCCCCACTTTCGTTCAG.................................................. 21 1 1 1.00 1 0 0 0 0 1 0
.......................................................................................GATTGCCCGACTTTCTTTCAGA................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................GATTGCCCTACTTTCTTTCAGA................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTAGGTGGGACAGATG........................................................................................ 20 1 1 1.00 1 0 0 0 0 1 0
........................................................................................ATTGCCCCACTTTCTTTCA................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................GATTGCCCCACTCTCTTTCAGT................................................. 22 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................GATTGCCCCACTTTCTTTAAG.................................................. 21 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................GATTGACCCACTTTCTTTCAG.................................................. 21 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................GATTGCCCAACTTTCCTTCAG.................................................. 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................GATTGACCCACTTTCTTTCAGTT................................................ 23 2 1 1.00 1 0 1 0 0 0 0
...................................................TGAGTAGGTGGGTCAGATGACC..................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TTTAAACAAAAATCCAAAGCAG....... 22 0 1 1.00 1 0 0 0 1 0 0
....................................................GAGTAGGTGGGTCAGATGAAG..................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................GATTGCCCTACTTTCTTTCA................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................GATTGTCCCACTTTCTTTCAG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................GACTGCCCCACTTTCTTTCAG.................................................. 21 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGAATAGGTGGGTCAGATG........................................................................................ 20 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................GATTGCCCCACTTTCTTTCGG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTAGGTGGGTCAGATGAAG..................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0
...................................................TGAGTAGGTGGGTCAGATGAAGT.................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1
.......................................................................................TATTGCCCCACTTTCTTTCAGT................................................. 22 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................GATCGCCCCACTTTCTTTCAGT................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTAGGTGGGGTAGATGA....................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0
..................................................GTGAGTAGGTGGGTCAGATGAAGTC................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................GATTTCCCCACTTTCTTTCAGT................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTAGGTGGGTCATATGA....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTAGGTGGGTCAGA.......................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0
..................................................GTGAGTAGGTGGGTCAGATT........................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTAGTTGGGTCAGATG........................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0
........................................................................................ATTGCCCCGCTTTCTTTCAGT................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................TCGATTGCCCCACTTTCTTT..................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................GATGGCCCCACTTTCTTTCAGT................................................. 22 1 1 1.00 1 0 0 1 0 0 0
......................................................................................AGATTGCCGCACTTTCTTTCAGA................................................. 23 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................GTTTGCCCCACTTTCTTTCAGA................................................. 22 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................GATTGCCCAACTTTCTTTCAGT................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTAGGTGGGTTAGATG........................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTATGTGGGTCAGATGA....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................GATTGCCCCACTTTCTTTCAAT................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTAGGTGGGTCAGATGT....................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
..........CACTCAACAATACCAGCAACAAGC............................................................................................................................ 24 3 2 0.50 1 0 0 1 0 0 0
..........CACTCAACAATACCAGCAACAAG............................................................................................................................. 23 3 2 0.50 1 0 0 1 0 0 0
..................................................GTTAGTATGTGGGTCAGATTA....................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0
....................................................................................ATCAATTGCCCCAGTTTC........................................................ 18 2 4 0.25 1 0 0 1 0 0 0
............CTCAACAATACCAGCAACAAGC............................................................................................................................ 22 3 10 0.10 1 0 0 1 0 0 0
..................AATACAACCACCAAACAAA......................................................................................................................... 19 2 20 0.05 1 0 0 1 0 0 0
..................AATACAACCAAAGAACAAACAAA..................................................................................................................... 23 3 20 0.05 1 0 0 1 0 0 0
..............................AGACAAAAAAACAAGCACA............................................................................................................. 19 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CTCTAGGGAGGTGATTTGTTATGTTCGTTGTTTGTTTGTTTGTTCGTGTCCACTCATCCACCCAGTCTACTTCAGTGACTTGATTAGCTAACGGGGTGAAAGAAAGTCACATGTATGTTGACATTGCTTAAATTTGTTTTTAGGTTTCGTCTTCGTTC

**************************************************..(((.(((((((.(((.((((((......)))..))).))).))))))).)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V039

embryo

 V055

head
...................................TGGTTCGTTCGTGTCCACTAA...................................................................................................... 21 3 3 0.33 1 1 0
..........................................................................GTGACTTGATTAGCCAC................................................................... 17 2 9 0.11 1 0 1
................TGTTATGTGCGTTGTTGGTTTT........................................................................................................................ 22 3 12 0.08 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13340:19296082-19296241 + dan_84 confident GAG---------------------------ATCCCTCCACTAAACAATA--CAAG---CAACAA-----------------------ACAAAC--AAA---------CA-A--GCACAGGTGAGTAG---------------GTG---------------GGT---CAGATG-AAGTCAC--TG--AACTAATCGATTGCCC------------------CACTTT--CTTTCAGTGTACA----TACAACTGT-AACGAATTTAAAC--AAA--AATCCAAAG---C---AGA------AGCAAGAA
droBip1 scf7180000396413:3069672-3069857 - GAGAG--TC------------GATGCAACAATCCCTCCAGTAAACAATA--CAAACAGTAACCA---GAA---------ACCT-ACGGA---------AATCGAACCAA-GAAGCACAGGTGAGTCT---------CTAGA---CACGACTA---TAG-GAAG---GTGATA-AAGTCAC----------------TCACCC----------------CCACCTTT--ATTTCAGTGTACA----TACAACTGT-AACGAATTTAAAA--ACC--AAA--TAGC-------AG-C----------GCA
droKik1 scf7180000302697:662109-662249 - AAGAG--TAAGGCGCATCGCAAATGCAACAATCCCTCCAG----------------------------------------------------------------------------CAGGTGAGTGC---------------GAGTGTGATG---AGT-GGGTGAAGTGATG-AAGTCAC--GG--AGCTAATTACTTGTCC------------------CACTTT--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAAC----------------------------------------
droFic1 scf7180000453826:322538-322721 + AAGAG--TAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAAG---------------AACC-------------------G----------AA-G--AAACAGGTGAGTTG---------------TCGACTGATA---AAT-GAGC---CCCATG-AAGTCACCGTG--ATTTAATTAATTGCCC------------------CACTTG--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAAC--CAA-------AAGC-------AC-A------GCAAGAA
droEle1 scf7180000491261:1882234-1882426 - AAGAG--TCAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAATCCAACAA----ACAAGAAGC-------------------G----------AA-G--AAACAGGTGAGTGG-------------------CTGATA---AAT-TGGC---CTGACG-AAGTCACCGTG--AACTAATTGATTGCCC------------------CACTTT--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAAA--TCC-------AAGCAAG---CGG-T--------TAGCG
droRho1 scf7180000778847:4906-5080 + ---------AGGCGCATCGCAAATACAACAATCCCTCCAGTAAACAATA--CAAAATCCAAC------ACAAGAAGC-------------------G----------AA-G--AAACAGGTGAGTGG-------------------CTGATA---AAT-TGGA---CTGGTG-AAGTCACAGAG--AGCTAATTGATTGCCC------------------CACTTT--ATTCCAGTGTATA----TATAACTGT-AACGAATTTAAAA--TCC-------AAGCAAG---------------------
droBia1 scf7180000302075:1536432-1536632 + ------------------GCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAATCAACAA----AC---------AAGT-ACAGCAAAC--AAA---------AAGA--AAACAGGTGAGTTG---------CTGCCGCCGACTGATA---AATTGAGC---CCCATG-AAGTCAGCGTG--AGCTAATTGATTGCCC----------------TCCACTTT--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAGC--AGC--AAC--AAGCAA-------A------AGCGGTTC
droTak1 scf7180000413872:268937-269110 - CACAGAGTAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAATCAACAA---------------------GAGCAAAC--AAA---------AA-G--AAACAGGTGAGTTG---------------TG--TTGATG---AAT-GA------TTATG-AAGTCACCCTGAAAGCTAATTGATTGCCC------------------CACTTT--ATTGCAGTA------------------AACGAATTTAAGAAGCAA-------AAGC------------------------
droEug1 scf7180000409770:875063-875268 - CAGAG--TAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAACCAA--------------GCA-AAGT-ACAGCAAACA--G----------AA-G--AAACAGGTGAGTTATTACCGTTGTTGTTGTTGACT--------------------GATG-GAGTCGCTGTG--AGCTAATTGATTACCC------------------CACTTT--ATTCCAGTGTACATATATACAACTGT-AACGAATTTAAGC--AAC-------AAGC-------GG-T------TCAAGAA
dm3 chr3R:23393890-23394085 - CAGAGTGTAAGGCGCATCGCATATGCAACAATCCCTCCAGTAAACAATA--CAGAAAGC------------------A-AAGT-ATAGCAAACACAAA---------AA-G--AAACAGGTGAGTAG---------------TTGACTGATAATTAAT-GAGC---GTGATG-AAGTCACCGTG--AGCTAATTGATTGC-C------------------CACTTA--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAGC--AAG-------AAGCAAG---------------------
droSim2 3r:22818955-22819145 - CAGAGTGTAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAGAAAGC------------------A-AAGT-ATAGCAAACACAAA---------AA-G--AAACAGGTGAGTAG---------------TTGACTGATA---AAT-GAGC---GTGATG-AAGTCACCGTG--AGCTAATTGATTGCCC------------------CACTTA--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAGC--GAC-------AAGC------------------------
droSec2 scaffold_22:27664-27854 - CAGAGTGTAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAGAAAGC------------------A-AAGT-ATAGCAAACACAAA---------AA-G--AAACAGGTGAGTAG---------------TTGACTGATA---AAT-GAGC---GTGATG-AAGTCACCGTG--AGCTAATTGATTGCCC------------------CACTTA--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAGC--AAC-------AAGC------------------------
droYak3 3R:23095113-23095320 + CAGAG--TAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAATCAACAA---CACAAGAAGCA-AAGT-ATAGCAAAC--AAA---------AA-G--AAACAGGTGAGTAG------------TAGTTAACTGATA---AAT-AAGC---GTGATATAAGTCACAGTG--AGCTAATTGATTGCCC------------------CACTTT--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAGC--AAC-------AAGCAA----------------------
droEre2 scaffold_4820:4643885-4644080 + CAGAG--TAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAATCAACAA---CACAAGAAGCA-AAGT-ATAGCAAACA--G----------AA-G--AAACAGGTTTGTAG---------------TTGACTGATA---AAT-GAGC---GTGATG-AAGTCACAGTG--AGCTAATTGATTGCCC------------------CACTTG--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAAC--AA------------------------------------
dp5 2:9040934-9041143 - CACAAGAGAAGGCGCAAC---AGTGCAACAATCCCTCCAGCAACAAAGAACCTGAAAGCAGCAGCAG-A-CAGCAGCAGAAGTGGCAGCAAACA--GAACGTAAATCTA-G--AAACAGGTGAGTGC---------------GATTCTAAAA---CGT-TTTCAAGGGGAGA-AACT---------AATGAATATATTCTCA------------------TGTTTT--CTGGCAGTGTAAA----TACAACTGT-AACGAATTTAAAG-CAAA-------AA--------------------------
droPer2 scaffold_0:2854418-2854644 - CACAAGAGAAGGCGCAAC---AGTGCAACAATCCCTCCAGCAACAAAGAACCTGAAAGCAGCAGCAGCAGCAGCAGCAGAAGTGGCAACAAACA--GAACGTAAATCTA-G--AAACAGGTGAGTGC---------------GATTCTAAAA---CGT-TTTCAAGGGGAGA-AACT---------AATGAATATATTCTCA------------------TGTTTT--CTGGCAGTGTAAA----TACAACTGT-AACGAATTTAAAG-CAAACAAAA--AAGC-------AG-A--------CAACA
droWil2 scf2_1100000004902:3632585-3632643 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTGTATA----TACAAGTGTGAACGAATTTAAGAACAAA-------AAAC---CGTCAAA------GGCAAACA
droVir3 scaffold_12855:2248945-2249044 + AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAG--TC--AACCAATCAATAAGTCAACTTTTTAGTAATGCTGATTTTTCTTTTG----------------CAGTGT-AACGAATTTAAAA-CAAC--------AACACG---AAA-TTAATAGGCAACAA
droMoj3 scaffold_6540:32558108-32558144 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-AACGAATTTAAAA-CAACT------AAAA---CAACAA-G--------GAAAC
droGri2 scaffold_15081:3685881-3685914 + AAACAAACAA-------------------------------------------------------------AGAAAC-------------------A----------AA-C--AAACAAACAAGCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GAG---------------------------ATCCCTCCACTAAACAATA--CAAG---CAACAA-----------------------ACAAAC--AAA---------CA-A--GCACAGGTGAGTAG---------------GTG---------------GGT---CAGATG-AAGTCAC--TG--AACTAATCGATTGCCC------------------CACTTT--CTTTCAGTGTACA----TACAACTGT-AACGAATTTAAAC--AAA--AATCCAAAG---C---AGA------AGCAAGAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................................................................................................GATTGCCC------------------CACTTT--CTTTCAG.........................................................................211113.0011392802110
..................................................................................................................................................................................................GATTGCCC------------------CACTTT--CTTTCAGT........................................................................22170.007044710216
..................................................................................................................................................................................................GATTGCCC------------------CACTTT--CTTTCAGA........................................................................22149.00494080100
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGATG-A......................................................................................................................................21133.00333024222
..................................................................................................................................................................................................GATTGCCC------------------CACTTT--CTTTCA..........................................................................20120.00201700201
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGATG-.......................................................................................................................................20111.0011100118
...................................................................................................................................................................................................ATTGCCC------------------CACTTT--CTTTCAG.........................................................................2019.009900000
...................................................................................................................................................................................................ATTGCCC------------------CACTTT--CTTTCAGA........................................................................2115.005500000
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGAT.........................................................................................................................................1913.003000003
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGATG-AAG....................................................................................................................................2313.003100011
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGATG-AA.....................................................................................................................................2213.003000012
...................................................................................................................................................................................................ATTGCCC------------------CACTTT--CTTTCAGT........................................................................2113.003300000
..................................................................................................................................................................................................GATTGCCC------------------CACTTT--CTTTCAGTT.......................................................................2313.003300000
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGATG-AAGTCAC--..............................................................................................................................2713.003000003
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGATG-AAGT...................................................................................................................................2412.002010010
..................................................................................................................................................................................................GATTGCCC------------------CACTTT--CTTTCAGC........................................................................2212.002020000
.................................................................................................................................................................................................CGATTGCCC------------------CACTTT--CTTTCAG.........................................................................2212.002100001
..................................................................................................................................................................................................GATTGCCC------------------CACTTT--CTTTCAGAA.......................................................................2312.002110000
..................................................................................................................................................................................................GATTGCCC------------------CACTTT--CTTTA...........................................................................1911.001100000
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGATG-AT.....................................................................................................................................2211.001000010
................................................................................................................................................................................................TCGATTGCCC------------------CACTTT--CTTTCAGT........................................................................2411.001010000
..........................................................................................................................AGTAG---------------GTG---------------GGT---CAGATG-AA.....................................................................................................................................1911.001100000
................................................................................................................................................................................................TCGATTGCCC------------------CACTTT--CTTTCA..........................................................................2211.001100000
..................................................................................................................................................................................................GATTGCCC------------------CACTTT--CTTTC...........................................................................1911.001100000
........................................................................................................................TGAGTAG---------------GTG---------------GGT---CAGATG-A......................................................................................................................................2011.001100000
........................................................................................................................TGAGTAG---------------GTG---------------GGT---CAGATG-AA.....................................................................................................................................2111.001000010
...................................................................................................................................................................................................................................................................................AATCCAAAG---C---AGA------AGCAAG..1911.001010000
...................................................................................................................................................................................................ATTGCCC------------------CACTTT--CTTTCA..........................................................................1911.001100000
........................................................................................................................TGAGTAG---------------GTG---------------GGT---CAGATG-ACC....................................................................................................................................2211.001100000
.....................................................................................................................................................................................................................................................................TTTAAAC--AAA--AATCCAAAG---C---AG...............2211.001000010
.........................................................................................................................GAGTAG---------------GTG---------------GGT---CAGATG-AAG....................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................AA--AATCCAAAG---C---AGA------AGCAAGA.2211.001000100
........................................................................................................................TGAGTAG---------------GTG---------------GGT---CAGATG-AAG....................................................................................................................................2211.001000010
........................................................................................................................TGAGTAG---------------GTG---------------GGT---CAGATG-AAGT...................................................................................................................................2311.001001000
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGATG-AAGTC..................................................................................................................................2511.001100000
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGA..........................................................................................................................................1811.001000010
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGATT-.......................................................................................................................................2011.001000001
................................................................................................................................................................................................TCGATTGCCC------------------CACTTT--CTTT............................................................................2011.001100000
.......................................................................................................................GTGAGTAG---------------GTG---------------GGT---CAGATG-T......................................................................................................................................2111.001000010
droBip1
GAGAG--TC------------GATGCAACAATCCCTCCAGTAAACAATA--CAAACAGTAACCA---GAA---------ACCT-ACGGA---------AATCGAACCAA-GAAGCACAGGTGAGTCT---------CTAGA---CACGACTA---TAG-GAAG---GTGATA-AAGTCAC----------------TCACCC----------------CCACCTTT--ATTTCAGTGTACA----TACAACTGT-AACGAATTTAAAA--ACC--AAA--TAGC-------AG-C----------GCASizeHit CountTotal NormTotal
No Reads
droKik1
AAGAG--TAAGGCGCATCGCAAATGCAACAATCCCTCCAG----------------------------------------------------------------------------CAGGTGAGTGC---------------GAGTGTGATG---AGT-GGGTGAAGTGATG-AAGTCAC--GG--AGCTAATTACTTGTCC------------------CACTTT--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAAC----------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAGAG--TAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAAG---------------AACC-------------------G----------AA-G--AAACAGGTGAGTTG---------------TCGACTGATA---AAT-GAGC---CCCATG-AAGTCACCGTG--ATTTAATTAATTGCCC------------------CACTTG--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAAC--CAA-------AAGC-------AC-A------GCAAGAASizeHit CountTotal NormTotal
No Reads
droEle1
AAGAG--TCAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAATCCAACAA----ACAAGAAGC-------------------G----------AA-G--AAACAGGTGAGTGG-------------------CTGATA---AAT-TGGC---CTGACG-AAGTCACCGTG--AACTAATTGATTGCCC------------------CACTTT--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAAA--TCC-------AAGCAAG---CGG-T--------TAGCGSizeHit CountTotal NormTotal
No Reads
droRho1
---------AGGCGCATCGCAAATACAACAATCCCTCCAGTAAACAATA--CAAAATCCAAC------ACAAGAAGC-------------------G----------AA-G--AAACAGGTGAGTGG-------------------CTGATA---AAT-TGGA---CTGGTG-AAGTCACAGAG--AGCTAATTGATTGCCC------------------CACTTT--ATTCCAGTGTATA----TATAACTGT-AACGAATTTAAAA--TCC-------AAGCAAG---------------------SizeHit CountTotal NormTotal
No Reads
droBia1
------------------GCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAATCAACAA----AC---------AAGT-ACAGCAAAC--AAA---------AAGA--AAACAGGTGAGTTG---------CTGCCGCCGACTGATA---AATTGAGC---CCCATG-AAGTCAGCGTG--AGCTAATTGATTGCCC----------------TCCACTTT--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAGC--AGC--AAC--AAGCAA-------A------AGCGGTTCSizeHit CountTotal NormTotal
No Reads
droTak1
CACAGAGTAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAATCAACAA---------------------GAGCAAAC--AAA---------AA-G--AAACAGGTGAGTTG---------------TG--TTGATG---AAT-GA------TTATG-AAGTCACCCTGAAAGCTAATTGATTGCCC------------------CACTTT--ATTGCAGTA------------------AACGAATTTAAGAAGCAA-------AAGC------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAGAG--TAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAACCAA--------------GCA-AAGT-ACAGCAAACA--G----------AA-G--AAACAGGTGAGTTATTACCGTTGTTGTTGTTGACT--------------------GATG-GAGTCGCTGTG--AGCTAATTGATTACCC------------------CACTTT--ATTCCAGTGTACATATATACAACTGT-AACGAATTTAAGC--AAC-------AAGC-------GG-T------TCAAGAASizeHit CountTotal NormTotal
No Reads
dm3
CAGAGTGTAAGGCGCATCGCATATGCAACAATCCCTCCAGTAAACAATA--CAGAAAGC------------------A-AAGT-ATAGCAAACACAAA---------AA-G--AAACAGGTGAGTAG---------------TTGACTGATAATTAAT-GAGC---GTGATG-AAGTCACCGTG--AGCTAATTGATTGC-C------------------CACTTA--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAGC--AAG-------AAGCAAG---------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................AATA--CAGAAAGC------------------A-AAGT-ATAGC...........................................................................................................................................................................................................................22111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000901000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGAGTGTAAGGCGCATCGCATATGC..........................................................................................................................................................................................................................................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGAGTGTAAGGCGCATCGCATATGCAAC.......................................................................................................................................................................................................................................................................................2815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AACAATCCCTCCAGTAAACAATA--C................................................................................................................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CAGTGTACA----TACAACTGT-AACGA................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACAACTGT-AACGAATTTAAGC--......................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ACA----TACAACTGT-AACGAATTTAAGC--......................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AGCAAACACAAA---------AA-G--AAACAGTGT..........................................................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................A--CAGAAAGC------------------A-AAGT-ATAGCAAACAC.....................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGAGTGTAAGGCGCATCGCAT..............................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGGCGCATCGCATATGC..........................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AAGC------------------A-AAGT-ATAGCAAACACAAA---------.........................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACAACTGT-AACGAATTTAAGC--AAG-------............................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAATCCCTCCAGTAAACAAT....................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................ACA----TACAACTGT-AACGAATTTAAGC--A.....................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................ATA--CAGAAAGC------------------A-AAGT-ATAGC...........................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AGTGTACA----TACAACTGT-AACGAATTTAA..........................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GT-ATAGCAAACACAAA---------AA-G--A..................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................T-GAGC---GTGATG-AAGTCACCGTG--AGCT......................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GAGTGTAAGGCGCATCGCAT..............................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CCTCCAGTAAACAATA--CAGAAAGC------------------A-AA...................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATCGCATATGCAACAATCCCTCCAGC...........................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................T-ATAGCAAACACAAA---------AA-G--AAACAGTGT..........................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................ATGCAACAATCCCTCCAGT...........................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
CAGAGTGTAAGGCGCATCGCATATGCAAC.......................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TACA----TACAACTGT-AACGAATTTAAGC--AAG-------............................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................A----TACAACTGT-AACGAATTTAAGC--AAG-------A...........................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGGCGCATCGCATATGCAAC.......................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TACAACTGT-AACGAATTTAAGC--AAG-------AAGCA.......................3011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TA--CAGAAAGC------------------A-AAGT-ATAG............................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................CAATA--CAGAAAGC------------------A-AAGT-ATAGCAAA........................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.............................................AATA--CAGAAAGC------------------A-AAGT-ATAGCAAACAC.....................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACCGTG--AGCTAATTGATTG.............................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TATGCAACAATCCCTCCAGT...........................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................CAACTGT-AACGAATTTAAGC--AA....................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TACA----TACAACTGT-AACGAATTTAAGC--AA....................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AGTGTACA----TACAACTGT-AACGA................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TGATG-AAGTCACCGTG--AGCTAATTG.................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................ACTGT-AACGAATTTAAGC--AAG-------AAGCA.......................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................A--CAGAAAGC------------------A-AAGT-ATAGCA..........................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................CAGAAAGC------------------A-AAGT-ATAGCAAACAC.....................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................G---------------TTGACTGATAATTAAT-GAG..................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................AGAAAGC------------------A-AAGT-ATAGCAAA........................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AAAGC------------------A-AAGT-ATAGCAAACACAAA---------AA-G--...................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.AGAGTGTAAGGCGCATCGCAA..............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGTGTAAGGCGCATCGCA...............................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CAACTGT-AACGAATTTAAGC--......................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................A----TACAACTGT-AACGAATTTAAGC--......................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ATCCCTCCAGTAAACAATA--CAGAAAGC------------------A-A....................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TTAAT-GAGC---GTGATG-AAGT...................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................ACTGT-AACGAATTTAAGC--AAG-------AA..........................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ATAGCAAACACAAA---------AA-G--AAACAGT............................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................................CAGTGTACA----TACAACTGT-AAC..................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................GTG--AGCTAATTGATTGC-C------------------CC......................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
CAGAGTGTAAGGCGCATCGCAT..............................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ACAATA--CAGAAAGC------------------A-AAGT-................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCAACAATCCCTCCAGTAAACA......................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GTGTACA----TACAACTGT-AAC..................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGGCGCATCGCATATGCA.........................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................T-GAGC---GTGATG-AAGTCACCGTG--AGC.......................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CAGAGTGTAAGGCGCATCGCATATGC..........................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................GC------------------A-AAGT-ATAGCAAACACA....................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAGAGTGTAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAGAAAGC------------------A-AAGT-ATAGCAAACACAAA---------AA-G--AAACAGGTGAGTAG---------------TTGACTGATA---AAT-GAGC---GTGATG-AAGTCACCGTG--AGCTAATTGATTGCCC------------------CACTTA--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAGC--GAC-------AAGC------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.AGAGTGTAAGGCGCATCGCA...............................................................................................................................................................................................................................................................................................2011.00100010000000000000
.........................................................................................................................................................................................................................................................ACTGT-AACGAATTTAAGC--......................................1811.00100000001000000000
........................GCAACAATCCCTCCAGTA..........................................................................................................................................................................................................................................................................1811.00100000000000100000
.................................................................................GT-ATAGCAAACACAAA---------AA-G--AAAC...............................................................................................................................................................................................2311.00100001000000000000
droSec2
CAGAGTGTAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAGAAAGC------------------A-AAGT-ATAGCAAACACAAA---------AA-G--AAACAGGTGAGTAG---------------TTGACTGATA---AAT-GAGC---GTGATG-AAGTCACCGTG--AGCTAATTGATTGCCC------------------CACTTA--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAGC--AAC-------AAGC------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
CAGAG--TAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAATCAACAA---CACAAGAAGCA-AAGT-ATAGCAAAC--AAA---------AA-G--AAACAGGTGAGTAG------------TAGTTAACTGATA---AAT-AAGC---GTGATATAAGTCACAGTG--AGCTAATTGATTGCCC------------------CACTTT--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAGC--AAC-------AAGCAA----------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................................AA---CACAAGAAGCA-AAGT-ATAGC...........................................................................................................................................................................................................................2211.00100010000000
..........................AACAATCCCTCCAGTAAACAAT....................................................................................................................................................................................................................................................................2211.00101000000000
.....................AATGCAACAATCCCTCCAGT...........................................................................................................................................................................................................................................................................2011.00100000010000
................................................................................AGT-ATAGCAAAC--AAA---------AA-G--AAACAGT............................................................................................................................................................................................2511.00100000010000
........................................................ATCAACAA---CACAAGAAGCA-AAGT-................................................................................................................................................................................................................................2311.00101000000000
droEre2
CAGAG--TAAGGCGCATCGCAAATGCAACAATCCCTCCAGTAAACAATA--CAAAAATCAACAA---CACAAGAAGCA-AAGT-ATAGCAAACA--G----------AA-G--AAACAGGTTTGTAG---------------TTGACTGATA---AAT-GAGC---GTGATG-AAGTCACAGTG--AGCTAATTGATTGCCC------------------CACTTG--ATTCCAGTGTACA----TACAACTGT-AACGAATTTAAAC--AA------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................GT-ATAGCAAACA--G----------AA-G--AAACAGT............................................................................................................................................................................................2313.0030000300
......................................................................................AGCAAACA--G----------AA-G--AAACAGT............................................................................................................................................................................................1911.0010000010
..............................................................AA---CACAAGAAGCA-AAGT-ATAGCAAACA--....................................................................................................................................................................................................................2711.0010000010
...............................................................................AAGT-ATAGCAAACA--G----------AA-G--AAACAG.............................................................................................................................................................................................2411.0010000100
......................................................................................AGCAAACA--G----------AA-G--AAACAG.............................................................................................................................................................................................1811.0010000010
........................................................ATCAACAA---CACAAGAAGCA-AAGT-ATAGCA..........................................................................................................................................................................................................................2911.0010000100
..........................................................CAACAA---CACAAGAAGCA-AA...................................................................................................................................................................................................................................1911.0011000000
..........................................................................AGCA-AAGT-ATAGCAAACA--G----------.........................................................................................................................................................................................................1911.0011000000
....G--TAAGGCGCATCGCAAATG...........................................................................................................................................................................................................................................................................................1911.0010000100
....................................................................................ATAGCAAACA--G----------AA-G--AAACAGT............................................................................................................................................................................................2111.0010000100
dp5
CACAAGAGAAGGCGCAAC---AGTGCAACAATCCCTCCAGCAACAAAGAACCTGAAAGCAGCAGCAG-A-CAGCAGCAGAAGTGGCAGCAAACA--GAACGTAAATCTA-G--AAACAGGTGAGTGC---------------GATTCTAAAA---CGT-TTTCAAGGGGAGA-AACT---------AATGAATATATTCTCA------------------TGTTTT--CTGGCAGTGTAAA----TACAACTGT-AACGAATTTAAAG-CAAA-------AA--------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
........................................CAACAAAGAACCTGAAAGCAGCAGCAG-................................................................................................................................................................................................................................................2713.0030000000030
..........................................ACAAAGAACCTGAAAGCAGCAG....................................................................................................................................................................................................................................................2213.0030000000300
......................................AGCAACAAAGAACCTGAAAGCAGCAGC...................................................................................................................................................................................................................................................2712.0020000000002
.................................................ACCTGAAAGCAGCAGCAG-A-CA............................................................................................................................................................................................................................................2112.0020000000002
...........................................CAAAGAACCTGAAAGCAGCAGCAG-A-..............................................................................................................................................................................................................................................2512.0020000000002
.............................................AAGAACCTGAAAGCAGCAGCAG-A-CAGC..........................................................................................................................................................................................................................................2711.0011000000000
..........................................ACAAAGAACCTGAAAGCAGCAGCAG-A-..............................................................................................................................................................................................................................................2611.0010000000001
............................................AAAGAACCTGAAAGCAGCAGCA..................................................................................................................................................................................................................................................2211.0010000000001
.........................................................................................................................................................................................................................................AGTGTAAA----TACAACTGT-AACG.................................................2111.0010000100000
..CAAGAGAAGGCGCAAC---AGTG...........................................................................................................................................................................................................................................................................................2011.0010100000000
....................................CCAGCAACAAAGAACCTGAAAGCA........................................................................................................................................................................................................................................................2411.0010100000000
......................GTGCAACAATCCCTCCAGCAACAAAG....................................................................................................................................................................................................................................................................2611.0010100000000
...............................................................GCAG-A-CAGCAGCAGAAGTGGCAGC...........................................................................................................................................................................................................................2411.0010001000000
.....GAGAAGGCGCAAC---AGTGCAACAA.....................................................................................................................................................................................................................................................................................2311.0010000000010
................................................AACCTGAAAGCAGCAGCAG-A-C.............................................................................................................................................................................................................................................2111.0010000000001
................................................AACCTGAAAGCAGCAGCAG-A-..............................................................................................................................................................................................................................................2011.0010100000000
................................................AACCTGAAAGCAGCAGCAG-A-CA............................................................................................................................................................................................................................................2211.0010000000001
.................................................ACCTGAAAGCAGCAGCAG-A-C.............................................................................................................................................................................................................................................2011.0010000000001
.................................................ACCTGAAAGCAGCAGCAG-A-CAGCAGCAG.....................................................................................................................................................................................................................................2811.0010010000000
............................................AAAGAACCTGAAAGCAGCAGCAG-A-..............................................................................................................................................................................................................................................2411.0010000000001
.........................CAACAATCCCTCCAGCAACA.......................................................................................................................................................................................................................................................................2011.0010100000000
..........................................ACAAAGAACCTGAAAGCAGCAGCAG-A-C.............................................................................................................................................................................................................................................2711.0010000000001
............................................................................................................................................................................................................................................GTAAA----TACAACTGT-AACGAAT..............................................2111.0010100000000
droPer2
CACAAGAGAAGGCGCAAC---AGTGCAACAATCCCTCCAGCAACAAAGAACCTGAAAGCAGCAGCAGCAGCAGCAGCAGAAGTGGCAACAAACA--GAACGTAAATCTA-G--AAACAGGTGAGTGC---------------GATTCTAAAA---CGT-TTTCAAGGGGAGA-AACT---------AATGAATATATTCTCA------------------TGTTTT--CTGGCAGTGTAAA----TACAACTGT-AACGAATTTAAAG-CAAACAAAA--AAGC-------AG-A--------CAACASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
............................................................................................................................................................................................................................................GTAAA----TACAACTGT-AACGAAT..............................................2113.003300000
............................................................................................................................................................................................................................................GTAAA----TACAACTGT-AACGAATT.............................................2213.003300000
.............................................AAGAACCTGAAAGCAGCAGCAGCA...............................................................................................................................................................................................................................................2411.001100000
.............................................................................AGAAGTGGCAACAAACA--GAAC................................................................................................................................................................................................................2111.001001000
................................................................................AGTGGCAACAAACA--GAACGT..............................................................................................................................................................................................................2011.001010000
.....................................CAGCAACAAAGAACCTGAAAGC.........................................................................................................................................................................................................................................................2211.001100000
.........................................................................................AAACA--GAACGTAAATCTA-G--AAACAG.............................................................................................................................................................................................2511.001000100
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTGTATA----TACAAGTGTGAACGAATTTAAGAACAAA-------AAAC---CGTCAAA------GGCAAACASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
................................................................................................................................................................................................................................................A----TACAAGTGTGAACGAATTTAAGAAC......................................2611.00100010
........................................................................................................................................................................................................................................CAGTGTATA----TACAAGTGT......................................................1811.00100010
.........................................................................................................................................................................................................................................AGTGTATA----TACAAGTGTGAAC..................................................2111.00100100
droVir3
AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAG--TC--AACCAATCAATAAGTCAACTTTTTAGTAATGCTGATTTTTCTTTTG----------------CAGTGT-AACGAATTTAAAA-CAAC--------AACACG---AAA-TTAATAGGCAACAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................................................................................................................................................................CAGTGT-AACGAATTTAAAA-CAAC--------AACAC......................2811.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GTGT-AACGAATTTAAAA-CAA....................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AACACG---AAA-TTAATAGGCA....1911.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CGAATTTAAAA-CAAC--------AACA.......................1911.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CGAATTTAAAA-CAAC--------AACAC......................2011.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................GT-AACGAATTTAAAA-CAAC--------AACA.......................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-AACGAATTTAAAA-CAACT------AAAA---CAACAA-G--------GAAACSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
AAACAAACAA-------------------------------------------------------------AGAAAC-------------------A----------AA-C--AAACAAACAAGCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 10:28 PM