ID:

dan_81

 Coordinate:

scaffold_13335:211188-211245 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.5 -34.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AATTGTGAAATATAAATATATTCTTCAAATCGGAGATTGTTCTTAAAATAACTCATGTATATGTGCGATCTATTTTATTTAATTAGATCGTACATTTACGTGAGCTATATTTTGAACAAAACTTAACAACAAATTTAATTCAACAATATTAAATTTTC

***********************************.((((((..((.(((.((((((((.((((((((((((.((.....)).)))))))))))).)))))))).))).))..))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 V055

head

 M044

female body

 M058

embryo

 V106

head

 V039

embryo
..................................................ACTCATGTATATGTGCGATCTA...................................................................................... 22 0 1 44.00 44 35 6 1 0 2 0
..................................................ACTCATGTATATGTGCGATCT....................................................................................... 21 0 1 42.00 42 31 9 1 1 0 0
..................................................ACTCATGTATATGTGCGATC........................................................................................ 20 0 1 12.00 12 11 1 0 0 0 0
..................................................ACTCATGTATATGTGCGATCTAT..................................................................................... 23 0 1 7.00 7 5 1 1 0 0 0
.....................................................................................GATCGTACATTTACGTGAGCTA................................................... 22 0 1 4.00 4 3 0 1 0 0 0
..................................................ACTCATGTATATGTGCGATCTAA..................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
......................................................................................ATCGTACATTTACGTGAGCTA................................................... 21 0 1 3.00 3 2 1 0 0 0 0
..................................................ACTTATGTATATGTGCGATCT....................................................................................... 21 1 1 2.00 2 1 0 0 1 0 0
..................................................AATCATGTATATGTGCGATCT....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................GATCGTACATTTACGTGCGCTAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................ACTCATGTATATTTGCGATCTA...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ACTCATGTATATATGCGATCTA...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................ATCGTACATTTACGTGAGCTATA................................................. 23 0 1 1.00 1 0 1 0 0 0 0
..................................................ACTCATGGATATGTGCGATCT....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................GCTCATGTATATGTGCGCTCT....................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................ACGCATGTATATGTGCGATCT....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................ACTCATGGATATGTGCGATCTA...................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................ACTCATGTATATGTACGATCTC...................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................ACTCATGTATATGTGCGATCTATA.................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................AGTCATGTATATGTGCGATCTA...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ACTAATGTATATGTGCGATCTAA..................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
......................................................................................ATCGTACATTTACGTGAGCTAT.................................................. 22 0 1 1.00 1 0 1 0 0 0 0
..................................................ACTCATGTATATGTGCGATAT....................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................ACTCATGTATATGTGCGATCC....................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................ACTCATGTGTATGTGCGATCT....................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................GATCGTACATTTACGTGAGCT.................................................... 21 0 1 1.00 1 0 0 1 0 0 0
..................................................ACTCATGTATATGAGCGGTCTA...................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................GATCGTACATTTACGTGAGCGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ACTCATGTATATGTGCGTGCTG...................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
..................................................ACTCATGTATATGTGCTATCTA...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................ATGTATATGTGCGATCTAAA.................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0
..................................................ACTCGTGTGTATGTGCGCTCTA...................................................................................... 22 3 3 0.33 1 0 1 0 0 0 0
.................................................................................................................AAACAAAACTTAACAACAA.......................... 19 1 6 0.17 1 0 0 0 0 0 1
..........AATAAATATATGCTTCAAACC............................................................................................................................... 21 3 19 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

TTAACACTTTATATTTATATAAGAAGTTTAGCCTCTAACAAGAATTTTATTGAGTACATATACACGCTAGATAAAATAAATTAATCTAGCATGTAAATGCACTCGATATAAAACTTGTTTTGAATTGTTGTTTAAATTAAGTTGTTATAATTTAAAAG

************************************.((((((..((.(((.((((((((.((((((((((((.((.....)).)))))))))))).)))))))).))).))..))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V106

head

 M044

female body

 M058

embryo
.....................................................................................CTAGCATGTAAATGCACTCGA.................................................... 21 0 1 1.00 1 0 1 0
.............................................................................................................AAAAGTTGTTTTGAATGGTTGT........................... 22 2 1 1.00 1 1 0 0
...ACACTTTATAGTTATATAA........................................................................................................................................ 19 1 2 0.50 1 0 0 1
..........................................................................................ATGGAAATGTACTCGATA.................................................. 18 2 6 0.17 1 1 0 0
.............................................................CCACGGTAGATAAAATGAA.............................................................................. 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13335:211138-211295 + dan_81 confident AATTGTGAAATATAAATATATTCTTCAAATCGGAGATTGTTCTTAAAATAACTCATGTATATGTGCGATCTATTTTATTTAATTAGATCGTACATTTACGTGAGCTAT---------------ATTTTGAACAAAACTTAACAACAAATTTAATTCAACAATATTAAATTTTC
droBip1 scf7180000396431:1453190-1453352 + AATTATTCAAGTTAATTGGCATCTGCC---AAGAGAGTGCTCA----GTTATTGTTGATTATTTGCGAAACGTTTTA--TAACAAGGGTACACTGTTACAAAAAATGTAAAACATTTAAATTAACACTAAAAAAGCCCTAACAACAAATTTAACTTATTAACAT-AATCTTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AATTGTGAAATATAAATATATTCTTCAAATCGGAGATTGTTCTTAAAATAACTCATGTATATGTGCGATCTATTTTATTTAATTAGATCGTACATTTACGTGAGCTAT---------------ATTTTGAACAAAACTTAACAACAAATTTAATTCAACAATATTAAATTTTCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................ACTCATGTATATGTGCGATCTA.....................................................................................................22144.00441006352
..................................................ACTCATGTATATGTGCGATCT......................................................................................................21142.00421109310
..................................................ACTCATGTATATGTGCGATC.......................................................................................................20112.00120001110
..................................................ACTCATGTATATGTGCGATCTAT....................................................................................................2317.007100150
.....................................................................................GATCGTACATTTACGTGAGCTA..................................................................2214.004100030
..................................................ACTCATGTATATGTGCGATCTAA....................................................................................................2314.004000040
......................................................................................ATCGTACATTTACGTGAGCTA..................................................................2113.003000120
......................................................................................ATCGTACATTTACGTGAGCTAT---------------A.................................................2311.001000100
..................................................ACTCATGTATATGTGCGATCTATA...................................................................................................2411.001000010
......................................................................................ATCGTACATTTACGTGAGCTAT---------------..................................................2211.001000100
..................................................ACTCATGTATATGTGCGATCC......................................................................................................2111.001000010
.....................................................................................GATCGTACATTTACGTGAGCT...................................................................2111.001100000
......................................................ATGTATATGTGCGATCTAAA...................................................................................................2020.501000010
droBip1
AATTATTCAAGTTAATTGGCATCTGCC---AAGAGAGTGCTCA----GTTATTGTTGATTATTTGCGAAACGTTTTA--TAACAAGGGTACACTGTTACAAAAAATGTAAAACATTTAAATTAACACTAAAAAAGCCCTAACAACAAATTTAACTTATTAACAT-AATCTTTTSizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 06:50 PM