ID:

dan_787

 Coordinate:

scaffold_12929:1010411-1010561 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_6015:1]; CDS [Dana\GF22022-cds]; intron [Dana\GF22022-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

----------------##################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGAACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATTATCAACTCAAAAAATAAAAAAAAAAAACTAAATTAAACTATTAATAAATTATAAATTAATAACTAAAAAAAAAACGAATCCTTTTCAAGAAACAATAATCTTAAAAAAAAGGTGTCCCTAATAAAATATTTTTTATCATAAAAAAAAACTACAAAAAAAAAAGAAGGAAACCCAAAAACCCATTCATTAGAGAT
**************************************************..............................................................((......(((((((.....((..((((((.((((........))))....))))))..))............))))))).......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
..................................................................................................................................................................................................................AAAAAAAAAGAAGGAACCCAAAAAA................ 25 2 1 1.00 1 0 1 0
.................................................................................................................................................................................................................AAAAAAAAAAGAAGGAAACC...................... 20 0 1 1.00 1 0 1 0
..................................................................................................................................................................................................................AAAAAAAAAGACGGAAACC...................... 19 1 2 0.50 1 1 0 0
..................................................................................................................................................................................................................AAAAAACAAGAAGGAAACCGAA................... 22 2 2 0.50 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAATAGAAGGAAACC...................... 20 1 2 0.50 1 1 0 0
..................................................................................................................................................................................................................AACAAAAAAGAAGGAAACC...................... 19 1 2 0.50 1 1 0 0
.................................................................................................................................................................................ATAGAATTTGTTTTATCATAAAAAAA................................................ 26 3 2 0.50 1 1 0 0
.................................................................................................................................................................................................................AATAAAAAAAGAAGGAAACC...................... 20 1 2 0.50 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAAAAGAAGGAAAC....................... 19 0 2 0.50 1 1 0 0
......................................................................................................................................................................................................................AAAACGAAGGAAAACCAAAAACC.............. 23 2 2 0.50 1 1 0 0
..................................................................................................................................................................................................................AAACAAAAAGAAGAAAACCCAAAA................. 24 2 3 0.33 1 1 0 0
.......................................................................................................................................................................................TATTTTTTATTATAAAAAAAAAC............................................. 23 1 3 0.33 1 1 0 0
..................................................................................................................................................................................................................AAAAAAAAAGAAGGACACC...................... 19 1 4 0.25 1 1 0 0
.........................................................................................................................................................................................................................AAAAAGGAAACCCAAAAAC............... 19 1 4 0.25 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAAAAGAATGAAACC...................... 20 1 8 0.25 2 2 0 0
........................................................................................................................................................................................ATTTTTTATCATGAAAAAA................................................ 19 1 4 0.25 1 1 0 0
...............................................................................................................................................................................................................ACAGAGAAAAAAGAAGGAAACC...................... 22 2 4 0.25 1 1 0 0
...................................................................................................................................................................................................................AAAAAAAAGAAGGGAACCC..................... 19 1 5 0.20 1 1 0 0
...............................................................................................................................................................................................................AGAGAAAAAAAAGAAGGAACCCC..................... 23 3 5 0.20 1 1 0 0
.........................................................................................................................................................................................................................AAGAAAGAAACCCAAAAAC............... 19 1 5 0.20 1 1 0 0
.......CGTGGCGCAATGGAAGAC.................................................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 1
......................................................................................................................................................................................AGATTTTTTATTATAAAAAAAAACC............................................ 25 3 5 0.20 1 1 0 0
....................................................................................................................................................................................................................AAAAAAAGACGGCAACCCAAA.................. 21 2 5 0.20 1 1 0 0
...................................................................................................................................................................................................................AAAAAACAGAAGGAAACC...................... 18 1 5 0.20 1 1 0 0
.................................................................................................................................................................................................................ATAAAAAAAAGAAGGAGAACCAAAAA................ 26 3 5 0.20 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAAAAGGAGGAAACC...................... 20 1 5 0.20 1 1 0 0
.................................................................................................................................................................................................................ACAAAAAAAAGAAGGAAACC...................... 20 1 5 0.20 1 1 0 0
...............................................................................................................................................................................................................ACAAAAAACAAAGCAGGACACC...................... 22 3 5 0.20 1 1 0 0
........................................................................................................................................................................................................................AAAGAAGAACACCCAAAAAACCA............ 23 3 6 0.17 1 1 0 0
....................................................................................................................................................................................................................AAAAAAAGAAAGAAACCCAGAAA................ 23 2 6 0.17 1 1 0 0
.................................................................................................................................................................................................................AAAAAACAAAGAAGGACACCCAC................... 23 3 7 0.14 1 1 0 0
.......................................................................................................................................................................................................................AAAATAAGGAAACCCAAGAA................ 20 2 14 0.14 2 2 0 0
....................................................................................................................................................................................AAATATTTTTTATCACCACAAAA................................................ 23 3 7 0.14 1 1 0 0
........................................................................................................................................................................................................................AAAGAAGGAAAATCAAAAACC.............. 21 2 7 0.14 1 1 0 0
..................................................................................................................................................................................................................AAAAAAAAAGGAGGAAACC...................... 19 1 8 0.13 1 1 0 0
...............................................................................................................................................................................................................ACAAAAAAAAAACAAGGACACC...................... 22 2 8 0.13 1 1 0 0
.............................................................ACTCTAAAAATAAAAAAAAAAA........................................................................................................................................................................ 22 1 8 0.13 1 1 0 0
...................................................................................................................................................................................................................AAAAAAAAGAAGGACACC...................... 18 1 8 0.13 1 1 0 0
...............................................................................................................................................................................................................ACAAAAAAACAAGAAGGAAGC....................... 21 2 9 0.11 1 1 0 0
..................................................................................................................................................................................................................AAATAAAGAGAAGGAAACCC..................... 20 2 9 0.11 1 1 0 0
.....................................................................................................................................................................................................................AAAAAAGAAGGAAACCCACC.................. 20 2 9 0.11 1 1 0 0
...................................................................................................................................................................................................................AGAAAAAAGAAGGAAACC...................... 18 1 9 0.11 1 1 0 0
...................................................................................................................................................................................................................AAAAAAAAGAAGGGAACC...................... 18 1 10 0.10 1 1 0 0
...................................................................................................................................................................................AGAATTTGTTTTATCATAAAAAA................................................. 23 3 10 0.10 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAGAAGTAGGAAACC...................... 20 2 10 0.10 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAAAAGAAAGAAACC...................... 20 1 20 0.10 2 2 0 0
...................................................................................................................................................................................................................AAACAAAAGAAGGAAACCCCGA.................. 22 3 12 0.08 1 1 0 0
...................................................................................................................................................................................................................AAAAAAAAGAATGGAACCCAACA................. 23 3 13 0.08 1 1 0 0
.................................................................................................................................................................................................................AAAAACAAACGAAGGAAACC...................... 20 2 13 0.08 1 1 0 0
.................................................................................................................................................................................................................AAAAAACAAAGAAAGAAACCCA.................... 22 2 14 0.07 1 1 0 0
......................................................................................................................................................................................AAATTCTTTATCATAAAAAAA................................................ 21 2 14 0.07 1 1 0 0
.......................................................................................................................................................................................................................AAAAAAAGGCAACCCAAACACC.............. 22 3 14 0.07 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAAAAGAAGGACACCA..................... 21 2 16 0.06 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAAAGGAAGGACACC...................... 20 2 16 0.06 1 1 0 0
..................................................................................................................................................................................................................AAAACAAAAAAAGGACACCCAAAA................. 24 3 17 0.06 1 1 0 0
........................................................................................................................................................................................................................AAAGAAGGCAACCCAAACA................ 19 2 17 0.06 1 1 0 0
........................................................................................................................................................................................................................AAACAAGCAAACCCAAAAAC............... 20 2 18 0.06 1 1 0 0
.................................................................................................................................................................................................................AACAAAAAAAGAAGGAGACC...................... 20 2 18 0.06 1 1 0 0
..................................................................................................................................................................................................................AAACAAAACGAAAGAAACCCAAAA................. 24 3 20 0.05 1 1 0 0
.........................................................................................................................................................................................................................AAAAAAGAAACCCAAAAACCC............. 21 2 20 0.05 1 1 0 0
........................................................................................................................................................................................................................AAAGAAGGAAGCACAAAAA................ 19 2 20 0.05 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAAAAGAAGGAAA........................ 18 0 20 0.05 1 1 0 0
......................................................................................................................................................................................................................ACAAAGAAGGAAACCAAAAA................. 20 2 20 0.05 1 1 0 0
.....................................................................................................................................................................................................................AAAAAAGAAGAAACCCCAAAA................. 21 2 20 0.05 1 1 0 0
......................................................................................................................................................................................................................AAAAAAACGGAAACCCCAAAACC.............. 23 3 20 0.05 1 1 0 0
..................................................................................................................................................................................................................AAAAAAAAGGAAGGACACC...................... 19 2 20 0.05 1 1 0 0
..................................................................................................................................................................................................................AAAAAAAAAGAAGGACACCA..................... 20 2 20 0.05 1 1 0 0
..................................................................................................................................................................................................................AAAACAAAGGAAGGAAACC...................... 19 2 20 0.05 1 1 0 0
...............................................................................................................................................................................................................GCAAAGAAAAAAGAAGCAAACC...................... 22 3 20 0.05 1 1 0 0
...................................................................................................................................................................................................................AAAAAAAAGACGGAGACC...................... 18 2 20 0.05 1 1 0 0
..................................................................................................................................................................................................................AAAAACACAGAAGGAAACC...................... 19 2 20 0.05 1 1 0 0
..........................................................................................................................................................................................................................GAAAGGAAACCCAAAAACC.............. 19 2 20 0.05 1 1 0 0
................................................................................................................................................................................................................GAAAGAAAAAAGAAGGACACC...................... 21 3 20 0.05 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAAAGGACGGAAACC...................... 20 2 20 0.05 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAAAACAACGAACCCCAAAA................. 25 3 20 0.05 1 1 0 0
...................................................................................................................................................................................AAAATATTTTTTATTATCAAAA.................................................. 22 2 20 0.05 1 1 0 0
.......................................................................................................................................................................................................................AAAACTAGGACACCCAAAAAC............... 21 3 20 0.05 1 1 0 0
.....................................................................................................................................................................................................AAAAAAAACTCCAAAAAAAAA................................. 21 1 20 0.05 1 1 0 0
.................................................................................................................................................................................................................AAAAAAAAAAGAAGGGACCC...................... 20 2 20 0.05 1 1 0 0
...............................................................................................................................................................................................................AAAAAAGAAAAAGAAGGAAAC....................... 21 2 20 0.05 1 0 1 0
..................................................................................................................................................................................................................AAAAAAAAAGACGGAAACCA..................... 20 2 20 0.05 1 1 0 0

Anti-sense strand reads

GCTTGTGGCACGTCGTTACCTTCTGATAACCCCAGAATCGTCGTGATGCCCATGTAATAGTTGAGTTTTTTATTTTTTTTTTTTGATTTAATTTGATAATTATTTAATATTTAATTATTGATTTTTTTTTTGCTTAGGAAAAGTTCTTTGTTATTAGAATTTTTTTTCCACAGGGATTATTTTATAAAAAATAGTATTTTTTTTTGATGTTTTTTTTTTCTTCCTTTGGGTTTTTGGGTAAGTAATCTCTA
**************************************************..............................................................((......(((((((.....((..((((((.((((........))))....))))))..))............))))))).......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V106
head
..........................................................................................................................................................................CAGGGGTTATTTTATAAAA.............................................................. 19 1 2 4.00 8 7 1 0
......................................................................................................................................................................ACCACTGGGGTTATTTTATAAAA.............................................................. 23 3 2 2.50 5 5 0 0
.......................................................................................................................................................................CCACTGGGGTTATTTTATAAAA.............................................................. 22 2 1 2.00 2 2 0 0
.......................................................................................................................................................................CCACAGGGGTTATTTTATAA................................................................ 20 1 1 2.00 2 2 0 0
........................................................................................................................................................................CCCAGGGGTTATTTTATAAAA.............................................................. 21 2 1 2.00 2 2 0 0
...........................................................................................................................................................................AGGGGTTATTTTATAAAA.............................................................. 18 1 8 1.13 9 5 3 1
.......................................................................................................................................................................CCACGGGGGTTATTTTATAAAA.............................................................. 22 2 1 1.00 1 0 1 0
.......................................................................................................................................................................CCATAGGGGTTATTTTATAAAAA............................................................. 23 2 1 1.00 1 1 0 0
........................................................................................................................................................................CACAGGGGTTATTTTATAAAA.............................................................. 21 1 1 1.00 1 1 0 0
......................................................................................................................................................................ACCACAGGGGTTATTTTATAAAA.............................................................. 23 2 1 1.00 1 1 0 0
.........................................................................................................................................................................ACAGGGGTTATTTTATAAAA.............................................................. 20 1 1 1.00 1 0 1 0
.......................................................................................................................................................................CCAAAGGGGTTATTTTATAAAA.............................................................. 22 2 1 1.00 1 1 0 0
.........................................................................................................................................................................CCAGGGGTTATTTTATAAAA.............................................................. 20 2 6 0.83 5 5 0 0
.......................................................................................................................................................................CCCAAGGGGTTATTTTATAAAA.............................................................. 22 3 3 0.67 2 2 0 0
......................................................................................................................................................................ACCACAGGGGTTATTTTAT.................................................................. 19 2 6 0.67 4 4 0 0
..........................................................................................................................................................................CAGGGGTTATTTTATAAAAT............................................................. 20 2 8 0.63 5 5 0 0
.......................................................................................................................................................................CCAAAGGGGTTATTTTATAA................................................................ 20 2 7 0.57 4 4 0 0
.......................................................................................................................................................................CCAATGGGGTTATTTTATAAAA.............................................................. 22 3 13 0.54 7 7 0 0
.......................................................................................................................................................................CCACAAGGGTTATTTTATAAAA.............................................................. 22 2 2 0.50 1 1 0 0
.......................................................................................................................................................................CCACAAGGGTTATTTTATAA................................................................ 20 2 2 0.50 1 1 0 0
......................................................................................................................................................................CCCACCGGGGTTATTTTATAAAA.............................................................. 23 3 3 0.33 1 1 0 0
......................................................................................................................................................................ACCACCGGGGTTATTTTATAA................................................................ 21 3 10 0.30 3 3 0 0
.........................................................................................................................................................................ACAGGGGTTATTTTATAAAAT............................................................. 21 2 4 0.25 1 1 0 0
............................................................................................................................................................................GGGGTTATTTTATAAAAA............................................................. 18 1 4 0.25 1 1 0 0
.......................................................................................................................................................................CCACTGGGGTTATTTTATAAA............................................................... 21 2 4 0.25 1 1 0 0
.........................................................................................................................................................................AAAGGGGTTATTTTATAAAAAA............................................................ 22 2 4 0.25 1 1 0 0
..........................................................................................................................................................................CAGGGGTTATTTTATAAA............................................................... 18 1 4 0.25 1 1 0 0
......................................................................................................................................................................ACCACAGGGGTTATTTTATAA................................................................ 21 2 4 0.25 1 1 0 0
.......................................................................................................................................................................CCACTGGGGTTATTTTATAA................................................................ 20 2 4 0.25 1 1 0 0
......................................................................................................................................................................ACCACTGGGGTTATTTTATAA................................................................ 21 3 20 0.25 5 5 0 0
......................................................................................................................................................................ACCACCGGGGTTATTTTATAAAA.............................................................. 23 3 5 0.20 1 1 0 0
.......................................................................................................................................................................CCACACGGGTTATTTTATAA................................................................ 20 2 5 0.20 1 1 0 0
.......................................................................................................................................................................ACCCAGGGGTTATTTTATAAAA.............................................................. 22 3 5 0.20 1 1 0 0
.......................................................................................................................................................................CCACAGGGTTTATTTTGAAAAAA............................................................. 23 3 5 0.20 1 1 0 0
.......................................................................................................................................................................CCACTGGGGTTATTTTATA................................................................. 19 2 6 0.17 1 1 0 0
.......................................................................................................................................................................CCACCGGGGTTATTTTAT.................................................................. 18 2 13 0.15 2 1 1 0
.........................................................................................................................................................................AAAGGGGTTATTTTATAAAA.............................................................. 20 2 20 0.15 3 2 1 0
.......................................................................................................................................................................CCACTGGGGTTATTTTATAAAAT............................................................. 23 3 7 0.14 1 1 0 0
...........................................................................................................................................................................AGGGGTTATTTTATAAAAGA............................................................ 20 2 8 0.13 1 1 0 0
.........................................................................................................................................................................ACAGGGGTTATTTTATAAC............................................................... 19 2 8 0.13 1 1 0 0
.......................................................................................................................................................................CCACAGTGATTTTTTTATA................................................................. 19 2 8 0.13 1 1 0 0
........................................................................................................................................................................CACTGGGGTTATTTTATAA................................................................ 19 2 9 0.11 1 1 0 0
...........................................................................................................................................................TGAATTTTTTTTCCATGGGGA........................................................................... 21 3 10 0.10 1 0 1 0
........................................................................................................................................................................CCCAGGGGTTATTTTATA................................................................. 18 2 20 0.10 2 2 0 0
......................................................................................................................................................................CCCACTGGGGTTATTTTATAA................................................................ 21 3 10 0.10 1 1 0 0
.......................................................................................................................................................................CCCCCGGGGTTATTTTATAAAA.............................................................. 22 3 10 0.10 1 1 0 0
......................................................................................................................................................................ACCAAAGGGGTTATTTTATAAA............................................................... 22 3 11 0.09 1 1 0 0
.......................................................................................................................................................................CCAAAGGGGTTATTTTATA................................................................. 19 2 12 0.08 1 1 0 0
.................................................................................................................................................................................TATTTTATAAAAAATAGTGGGTT................................................... 23 3 12 0.08 1 0 0 1
.........................................................................................................................................................................CCAGGGGTTATTTTATAAA............................................................... 19 2 13 0.08 1 1 0 0
..........................................................................................................................................................................CAGGGGTTATTTTATTAAA.............................................................. 19 2 13 0.08 1 1 0 0
.......................................................................................................................................................................CCCCAGGGGTTATTTTATA................................................................. 19 2 13 0.08 1 1 0 0
........................................................................................................................................................................CACCGGGGTTATTTTATAAC............................................................... 20 3 17 0.06 1 1 0 0
.......................................................................................................................................................................ACACAGGGGTTATTTTATGA................................................................ 20 3 17 0.06 1 1 0 0
.......................................................................................................................................................................CCATAGGGGTTATTTTATA................................................................. 19 2 20 0.05 1 1 0 0
.......................................................................................................................................................................CCGCTGGGGTTATTTTATAA................................................................ 20 3 20 0.05 1 1 0 0
.......................................................................................................................................................................ACAAAGGGGTTATTTTATAAAA.............................................................. 22 3 20 0.05 1 1 0 0
......................................................................................................................................................................ACCACTGGGGTTATTTTATAAA............................................................... 22 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12929:1010361-1010611 - dan_787 CGAACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATTATCA----------ACTCAAAAAATAAAAA-A----AAA--------------AAACTAA------------ATTAAACTAT------------------------------------T--------------------A-------------------------------------------------------------------------------ATAAATTATAAATTAATAACTAAAAAAAAA-------ACGAATCCTTT--TCA----AGAAACAATAA----TCTTAAAAAAAAGGT--G-----------------------T----CCC--TAATAAAATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATCATAAAAAAAAACTACAAAAAAAAAAGAAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------ACCCAAAA-ACCCATTCATTAGAGAT
droBip1 scf7180000396592:7588-7825 - CGAACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATTATCA----------ATACCAAAA-----------AAAAAAAAC-CAAAAAAAT---------------------------------------------------------------ATA--------------------AAAAACCTTAA-------AC-----------------------------TAAACTA-------------------TAAAAATAATTAATAATTTAATAACCAAATA-----------ACTAATCCCTT--ACA----AGAAACAATAA----ACTTCAA--------------------------------------------AAACAAAAATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATT-ATAAAAATACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGAAACACAAAA-ACCCATTCATTAGAGAT
droKik1 scf7180000302398:51508-51803 - CGAACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACTA----------ACTCAAAAA---------------------------------------------------------AAAAACTAACTAAATTAATAAACCAGGGGAAAAACAAAAAACTAGCTTAAAAAACAAAAACTATAATAA--------ACTATAAGAAGCCTTTTTCCCCCTCG-----TAAGCCT-------------------AAGATC------GAG------------------ATAAGT-----CTTCTAATTACA-C----C-------------------C--ACAAAGTGTGTTCTCCTTCTCTTCTCTTCTAAT-------TAATTAC-----TGCA-TAGAG------------------------------------------ACAAAAGCTGTG--------------------------GAGAA--A----------------------------------------------------------------------------------------------------------------------------------CTAT------------------------------------------------------------------------------------------CAAGTGTCT---------------------------TAAAAAAC-AAT--------------------------------------------------------------------------------AGA-
droFic1 scf7180000453495:159547-159879 + --AACACCGTGCAGTAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACCA----------CTAACTAAA-----------CTAGCTAAA-ATCTAAGCT---------------------------------------------------------------AAG--------------------ACTAAGCT-----------------------------------------------CG-----------------A-TAATC------GAG------------------GA-------TCTCATCATTA-TT-C----A--AACGACCA----TCCCCCA---AAAGTGTT-TCCCCTTCTG------------A----TCT---CA-CAATTCGTCTTTAAAAA------------------------------------AAAAACACAAGATACG--AAA--CGAAACGAAACGAAACGGGAGGAATAC-------------GAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCGAAAAGTACAGATAAGTTGATAATTAACTACATAATAACCCCTCTCCCCACAAGTGTCC---------------------------TCTTAACT-AATT--GACAC------------------------------------------------------AAGAAA-ACATCCATCGTAGAT
droEle1 scf7180000491087:484542-484733 - -------TAAAAAA-------------------------------------------------------------------------------AAC--------------AAATTAA------------ATAAAAACCA-----------------------------------AA----------------------------------------------------------------------------------------------------ACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTAAACGAAACCAAACGAGAGGAAAAA-------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCGAGAACTACAGATAAGTTAATAATTTA----------AC-----CCCCCACAAGTGTCC---------------------------TCTTAACT-AATT--AACAAGAA---AA----AAACAAAAAAAAACAA--------AAAAAAACAAAAAAAAAACA-GAA-ACATCCATCGTAGAT
droRho1 scf7180000779807:7597-7913 - -------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAATCA----------CTAACTAAG-----------CTTACCTGCAGACTACGCT---------------------------------------------------------------TAG--------------------ACTAAGTT-----------------------------------------------CC-----------------T-AAACC------GAG------------------TTCAGCC----TCTCCATCCACC-C----C-------------------CA-AATCTGTGTG-----------------------T----CCTCTTAACTAATTAAAC-CAAGAGAAAAAACTGAAAATGAAAACACATAAAACC---------------------------ACTATAAACGAAACTAAACGAGAGGAAAAA-------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCGAGAACTACAGATAAGTTTATAATTTA----------AC------CCCCACAAGTGTCC---------------------------TCTTAACT-AATT--AACAAGCC-------------------------------------AAAAA------------AAA-GCAGCCATCGTAGAT
droBia1 scf7180000301502:80721-80779 - --AACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACTTAACCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415769:43101-43415 + --AACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAGCCA----------CTAACCTAA-----------CTAGCTAAA-GACTAAGCT---------------------------------------------------------------AAA--------------------ACTAAGCT-----------------------------------------------CC-----------------A-AAATC------AAG------------------ATAAGCTAGGCCCATCATATCC--C----A----CA---ATCAACCGATCA---AAAGTGTG-----------------------T----CCTCTTAATCCATTAACA-CAAAA------------------------------------------ACAAAAAACACGAAAAACTAAAAACAAAACGAGTCGAGAGGAAAAA-------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCTAGAACTACAGATAATATTATAATTTAC-----------------AACCACAAGTGTCC---------------------------TCTTAACT-AATT--AACAAAAC---AA-------------------------------------------------AAA-ACATCCACCGTAGAT
droEug1 scf7180000408987:88717-88950 - -------CGTGCAGCAATGGAAGACTATTGGGGTCTCAGCAGCACTACGGGTACATAACCA----------ATAATGAAA-----------CTAGATAGA-AACTAAGCC---------------------------------------------------------------AAG--------------------ACTAAGCT-----------------------------------------------TC-----------------G-AATTC------GAG------------------ATTTGCCTAGCCCATCGTTT-TG-C----A----CGACTATTATCCTTTTA---AAAGTGTG-----------------------T----TCTTTCAACTAATTAACT-TGAAAAC------------------------------------TAAAACAAAAAAAGAG--AAACATGAAACGTGATAAATCGTGAGGAAAAA-------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAT
dm3 chrXHet:2202-2432 + --AACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACCA----------CTAACAGAA-----------CTAACTAGT-GACTAAGCC---------------------------------------------------------------AAA--------------------ACTTAGCTAAC-------AC-----------------------------TAAGCGT-------------------CAAATC------GAG------------------TTAAGCTAGCACCACTATTTTCG-T----C-------------------CG-ACTCAGT--G-----------------------A----CCC--TAACCAATTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAA-ATCAAAAACATGAGACAATATTGAGATCGAGAACCACAGATAAGTTTATAATTTA----------------------------------------------------------------------------------------------------------------------------------------------------------C
droSim2 node_62956:19968-20245 - dsi_4772 --AACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACAA----------CTAACAGAA-----------CTAACTAGT-GACTAAGCC---------------------------------------------------------------AAA--------------------ACTTAGCTAAC-------AC-----------------------------TAAGCGT-------------------CAAATC------AAG------------------TTAAGCTAGCACCACTATTTCCG-T----C-------------------CG-ACTGAGT--G-----------------------A----CCC--TAACCAATTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACGA-ATGGAAAACATGAGACAATATTGAGATCGAGAGCCACAGATAAGTTTATAATTTACT------------------ACAAAAGTGCC----------------------------TTTTAACT-AATT--GACAA---------------------------------------------------------ATA-ACGTTCATCGTAGAT
droSec2 scaffold_109:85726-85837 - -------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACCA----------CTAACAGAA-----------CTAACTAGT-GACTAAGCC---------------------------------------------------------------AAA--------------------ACTTAGCTAAC-------AC-----------------------------TAAGCGT-------------------CAAATC------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:21745130-21745392 + --AACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACCA----------CTAACAGAT-----------CTAACTAGT-GACTAAGCCAAACTAAGCCAAAACTACGCCGAAACT---------------------------------------------------AATCCAAAACTATGCTAAC-------AC-----------------------------TAATCGC-------------------CAAATC------GAG------------------TTAAGCTAGCGCCACTATTTTCG-C----C-------------------CG-ACTCAGT--G-----------------------CCCACCCCCTTAACCAATTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACGA-ATCGAAACCAGGCGAAAATAGTGAGAT------CCACAGATATGTTTATAACTT----------------------------------------------------------------------------------------------------------------------------------------------------------AC
droEre2 scaffold_4690:18677495-18677687 + -------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACCA----------CTAACAAAA-----------CTAACTAGT-GACTAAGCC---------------------------------------------------------------AAA--------------------ACTAAGC--------------------------------------------------------------------CAAATC------AAG------------------TTAAGCTAGCGCCACTATTTCCG-C----C-------------------CG-ACACAGT--A-----------------------C----CCCAATAACCAATTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACGA-ATCGAAACCAGGCGAAAACAGTGAGATCGAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
dp5 XL_group1e:557011-557279 - -------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATACTAA----------TTAGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCT------------------CTCTAAGCCTCACTAGACTAAGCCTCTGGCCTCTAATCAGAGGCAGAGCCCTGCTGCCGAAGAAAACCTACATAT----------------------------------------------------------C--------------------ACAATTACCTGCAAGTGTCATAAATTAATTAGCAAATTTATTGAGCCTTATACATAACTACTAC----TACACTGCATACATCCATAACTAT--------TGTGGCTAAAAAAAGTCATCCTA-AAA-TCATTTACCGCTGAT
droPer2 scaffold_30:656713-656980 + -------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATACTAA----------TTAGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCT------------------CTCTAAGCCTCACTAGACTAAGCCTCTGGCCTCTAATCAGAGGCAGAGCCCTGCTGCCGAAGAAAACCTACATAT----------------------------------------------------------C--------------------ACAATTACCTGCAAGTGTCATAAATTAATTAGCAAATTTATTGAGCCTTATAACT-ACTACTAC----TACACTGCATACATCCATAACTAT--------TGTGGCTAAAAAAAGTCATCCTA-AAA-TCATTTACCGCTGAT
droWil2 scf2_1100000004515:797198-797468 - dwi_1038 -------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAATCC----------AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AAAGAAATAATAATAATAACAACATCACATAATACAAAAAAAAAAAAAAACAAATTATA--ATA---------------------AGAAAAAGCAAAAAGCAAAAAAAAAAAAAAAACACCTCATAAACTAGCTAACATAACCTATAAGTAACTTTAAGCTCAACTAG-----GCCTTGA--------------------------------------------------GTTTTACCATTAAACAAA---------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAGAAAAGAAGAAT----CAGCA-ACTAAATCAATTTAAAT
droVir3 scaffold_12928:311983-312273 - -------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACGGGCACA--AATTACCTATTAAAA-ATTTACAA-A----AGA--------------AAACTTA------------CTTAAAACAT----------------------------------ATA--------------------TGAAACAGAATTGTTTCA----------A---------------AGCTC-------AAAGCAAAACTAACCTCAA---AATCAATTCATAAATTGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAAGAAAAG--GAA---------------------------CACAAA------------------------------------------------------------------------------------------------------------CAG-CAAAGGAAATTGAAAAATTAAGT--------------------------------GTTGTAAAATATGCAA-ACTAAATAAATCA---------------------------------------------------------------------ATT--AA----------------------AAATAAAAAAAAAAAACAACAAAGAAAAGTCAA----------CAATAAAATTAAGT
droMoj3 scaffold_6328:529764-530041 + -------CGTGCAGCAATGGAAGACTCTTGGGGTCTTAGCAGCACTACGGGTACGGGCACA--AATTACATACTTAAA-ATCTCAAATAAAGTAGATAAA-AT--------------------------------------------------------------------CAAATACATATAAAAAAAAAAAAATACAATGAAAG--------TAAATAAGAAC---------------AGATC-------GAGGCAAAACTAACCTAAA---AGCTAACTCAAATTCAGG---------------------------CACTC--AAAAGGAGGA-----------------------------------------------------------TA--TAACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGT--------------------------------GTTGAAAAATATGAAAAAACAAATAATTCACTAAA-------------------------------------------------------------T-AATC--AT----TAAATGGGATAAATCCATA-------------------------------------------------AGGAAAA
droGri2 scaffold_15203:6752266-6752506 - -------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACGGGCACAAAAATTACATATCTAAA-ACCTCTAA--------------------AAA------------------------------------------------------------AAAAAAGACCA--------------------ACTAA--------AATAAAACA----------------------------------------------------AGCAATTTTCAATTTAAAAAGTTTAAA-----------AAAAAACACTT--AAAGGGAAGAAATAATTT----TTTC-AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAAAAGTGTCA---------------------------TCAAAAAT-GATC--AATTAAAA---AA----TGAAATAAATACTAAT--------------------------AATA-ATACATGTACTA-AAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CGAACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATTATCA----------ACTCAAAAAATAAAAA-A----AAA--------------AAACTAA------------ATTAAACTAT------------------------------------T--------------------A-------------------------------------------------------------------------------ATAAATTATAAATTAATAACTAAAAAAAAA-------ACGAATCCTTT--TCA----AGAAACAATAA----TCTTAAAAAAAAGGT--G-----------------------T----CCC--TAATAAAATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATCATAAAAAAAAACTACAAAAAAAAAAGAAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------ACCCAAAA-ACCCATTCATTAGAGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAGAAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------ACC.......................2011.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAGAAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------AC........................1920.501010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGAAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------ACCCACC...................2090.111010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAGAAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------A.........................18200.051010000
droBip1
CGAACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATTATCA----------ATACCAAAA-----------AAAAAAAAC-CAAAAAAAT---------------------------------------------------------------ATA--------------------AAAAACCTTAA-------AC-----------------------------TAAACTA-------------------TAAAAATAATTAATAATTTAATAACCAAATA-----------ACTAATCCCTT--ACA----AGAAACAATAA----ACTTCAA--------------------------------------------AAACAAAAATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATT-ATAAAAATACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGAAACACAAAA-ACCCATTCATTAGAGATSizeHit CountTotal NormTotal
No Reads
droKik1
CGAACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACTA----------ACTCAAAAA---------------------------------------------------------AAAAACTAACTAAATTAATAAACCAGGGGAAAAACAAAAAACTAGCTTAAAAAACAAAAACTATAATAA--------ACTATAAGAAGCCTTTTTCCCCCTCG-----TAAGCCT-------------------AAGATC------GAG------------------ATAAGT-----CTTCTAATTACA-C----C-------------------C--ACAAAGTGTGTTCTCCTTCTCTTCTCTTCTAAT-------TAATTAC-----TGCA-TAGAG------------------------------------------ACAAAAGCTGTG--------------------------GAGAA--A----------------------------------------------------------------------------------------------------------------------------------CTAT------------------------------------------------------------------------------------------CAAGTGTCT---------------------------TAAAAAAC-AAT--------------------------------------------------------------------------------AGA-SizeHit CountTotal NormTotal
No Reads
droFic1
--AACACCGTGCAGTAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACCA----------CTAACTAAA-----------CTAGCTAAA-ATCTAAGCT---------------------------------------------------------------AAG--------------------ACTAAGCT-----------------------------------------------CG-----------------A-TAATC------GAG------------------GA-------TCTCATCATTA-TT-C----A--AACGACCA----TCCCCCA---AAAGTGTT-TCCCCTTCTG------------A----TCT---CA-CAATTCGTCTTTAAAAA------------------------------------AAAAACACAAGATACG--AAA--CGAAACGAAACGAAACGGGAGGAATAC-------------GAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCGAAAAGTACAGATAAGTTGATAATTAACTACATAATAACCCCTCTCCCCACAAGTGTCC---------------------------TCTTAACT-AATT--GACAC------------------------------------------------------AAGAAA-ACATCCATCGTAGATSizeHit CountTotal NormTotal
No Reads
droEle1
-------TAAAAAA-------------------------------------------------------------------------------AAC--------------AAATTAA------------ATAAAAACCA-----------------------------------AA----------------------------------------------------------------------------------------------------ACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTAAACGAAACCAAACGAGAGGAAAAA-------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCGAGAACTACAGATAAGTTAATAATTTA----------AC-----CCCCCACAAGTGTCC---------------------------TCTTAACT-AATT--AACAAGAA---AA----AAACAAAAAAAAACAA--------AAAAAAACAAAAAAAAAACA-GAA-ACATCCATCGTAGATSizeHit CountTotal NormTotal
No Reads
droRho1
-------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAATCA----------CTAACTAAG-----------CTTACCTGCAGACTACGCT---------------------------------------------------------------TAG--------------------ACTAAGTT-----------------------------------------------CC-----------------T-AAACC------GAG------------------TTCAGCC----TCTCCATCCACC-C----C-------------------CA-AATCTGTGTG-----------------------T----CCTCTTAACTAATTAAAC-CAAGAGAAAAAACTGAAAATGAAAACACATAAAACC---------------------------ACTATAAACGAAACTAAACGAGAGGAAAAA-------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCGAGAACTACAGATAAGTTTATAATTTA----------AC------CCCCACAAGTGTCC---------------------------TCTTAACT-AATT--AACAAGCC-------------------------------------AAAAA------------AAA-GCAGCCATCGTAGATSizeHit CountTotal NormTotal
No Reads
droBia1
--AACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACTTAACCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
--AACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAGCCA----------CTAACCTAA-----------CTAGCTAAA-GACTAAGCT---------------------------------------------------------------AAA--------------------ACTAAGCT-----------------------------------------------CC-----------------A-AAATC------AAG------------------ATAAGCTAGGCCCATCATATCC--C----A----CA---ATCAACCGATCA---AAAGTGTG-----------------------T----CCTCTTAATCCATTAACA-CAAAA------------------------------------------ACAAAAAACACGAAAAACTAAAAACAAAACGAGTCGAGAGGAAAAA-------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCTAGAACTACAGATAATATTATAATTTAC-----------------AACCACAAGTGTCC---------------------------TCTTAACT-AATT--AACAAAAC---AA-------------------------------------------------AAA-ACATCCACCGTAGATSizeHit CountTotal NormTotal
No Reads
droEug1
-------CGTGCAGCAATGGAAGACTATTGGGGTCTCAGCAGCACTACGGGTACATAACCA----------ATAATGAAA-----------CTAGATAGA-AACTAAGCC---------------------------------------------------------------AAG--------------------ACTAAGCT-----------------------------------------------TC-----------------G-AATTC------GAG------------------ATTTGCCTAGCCCATCGTTT-TG-C----A----CGACTATTATCCTTTTA---AAAGTGTG-----------------------T----TCTTTCAACTAATTAACT-TGAAAAC------------------------------------TAAAACAAAAAAAGAG--AAACATGAAACGTGATAAATCGTGAGGAAAAA-------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATSizeHit CountTotal NormTotal
No Reads
dm3
--AACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACCA----------CTAACAGAA-----------CTAACTAGT-GACTAAGCC---------------------------------------------------------------AAA--------------------ACTTAGCTAAC-------AC-----------------------------TAAGCGT-------------------CAAATC------GAG------------------TTAAGCTAGCACCACTATTTTCG-T----C-------------------CG-ACTCAGT--G-----------------------A----CCC--TAACCAATTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAA-ATCAAAAACATGAGACAATATTGAGATCGAGAACCACAGATAAGTTTATAATTTA----------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............AATGGAAGACTATTGGGGTCTTAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25145.004500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000892800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATTGAGATCGAGAACCACAGATA........................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGCAATGGAAGACTATTGGGGTCTTAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AATGGAAGACTATTGGGGTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATATTGAGATCGAGAACCACAG...........................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATTGAGATCGAGAACCACAG...........................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCAGCAATGGAAGACTATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATCGAGAACCACAG...........................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................AAC-------AC-----------------------------TAAGCGT-------------------CAAATC------GAG------------------TTAAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATTGGGGTCTTAGCAGCACTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACATGAGACAATATTGAGATCG.....................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAGATCGAGAACCACAG...........................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGATCGAGAACCACAGAT.........................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AATGGAAGACTATTGGGGTCTTAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGAGATCGAGAACCAC.............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATCGAGAACCACAGAT.........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATATTGAGATCGAGAAC................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAGACAATATTGAGATCGAGAAC................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CAGCAATGGAAGACTATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................C-------AC-----------------------------TAAGCGT-------------------CAAATC------GAG------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TTTCG-T----C-------------------CG-ACTCAGT--G-----------------------A----CCC--...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATATTGAGATCGAGAACC...............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GACTATTGGGGTCTTAGCAGCACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TGCAGCAATGGAAGACTATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATGGAAGACTATTGGGGTCTTAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATTGAGATCGAGAACCACAGAT.........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CGTGCAGCAATGGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
...............................GGTCTTAGCAGCACTACGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................GACTATTGGGGTCTTAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............AGCAATGGAAGACTATTGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................CTATTGGGGTCTTAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CTAGCACCACTATTTTCG-T----C-------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CTATTGGGGTCTTAGCAGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCAGCAATGGAAGACTATTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............GCAATGGAAGACTATTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........GCAGCAATGGAAGACTATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATTGAGATCGAGAAC................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCGAGAACCACAGATAAGTT....................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ACCGTGCAGCAATGGAAGACTATTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GT-------------------CAAATC------GAG------------------TTAAGCTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droSim2
--AACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACAA----------CTAACAGAA-----------CTAACTAGT-GACTAAGCC---------------------------------------------------------------AAA--------------------ACTTAGCTAAC-------AC-----------------------------TAAGCGT-------------------CAAATC------AAG------------------TTAAGCTAGCACCACTATTTCCG-T----C-------------------CG-ACTGAGT--G-----------------------A----CCC--TAACCAATTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACGA-ATGGAAAACATGAGACAATATTGAGATCGAGAGCCACAGATAAGTTTATAATTTACT------------------ACAAAAGTGCC----------------------------TTTTAACT-AATT--GACAA---------------------------------------------------------ATA-ACGTTCATCGTAGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTTATAATTTACT------------------.......................................................................................................................................1621.50300000012000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATCGAGAGCCACAG...........................................................................................................................................................................1911.00110000000000000000
droSec2
-------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACCA----------CTAACAGAA-----------CTAACTAGT-GACTAAGCC---------------------------------------------------------------AAA--------------------ACTTAGCTAAC-------AC-----------------------------TAAGCGT-------------------CAAATC------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................ATGGAAGACTATTGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.......CGTGCAGCAATGGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
droYak3
--AACACCGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACCA----------CTAACAGAT-----------CTAACTAGT-GACTAAGCCAAACTAAGCCAAAACTACGCCGAAACT---------------------------------------------------AATCCAAAACTATGCTAAC-------AC-----------------------------TAATCGC-------------------CAAATC------GAG------------------TTAAGCTAGCGCCACTATTTTCG-C----C-------------------CG-ACTCAGT--G-----------------------CCCACCCCCTTAACCAATTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACGA-ATCGAAACCAGGCGAAAATAGTGAGAT------CCACAGATATGTTTATAACTT----------------------------------------------------------------------------------------------------------------------------------------------------------ACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
-------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAACCA----------CTAACAAAA-----------CTAACTAGT-GACTAAGCC---------------------------------------------------------------AAA--------------------ACTAAGC--------------------------------------------------------------------CAAATC------AAG------------------TTAAGCTAGCGCCACTATTTCCG-C----C-------------------CG-ACACAGT--A-----------------------C----CCCAATAACCAATTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACGA-ATCGAAACCAGGCGAAAACAGTGAGATCGAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
-------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATACTAA----------TTAGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCT------------------CTCTAAGCCTCACTAGACTAAGCCTCTGGCCTCTAATCAGAGGCAGAGCCCTGCTGCCGAAGAAAACCTACATAT----------------------------------------------------------C--------------------ACAATTACCTGCAAGTGTCATAAATTAATTAGCAAATTTATTGAGCCTTATACATAACTACTAC----TACACTGCATACATCCATAACTAT--------TGTGGCTAAAAAAAGTCATCCTA-AAA-TCATTTACCGCTGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............AATGGAAGACTATTGGGGTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
droPer2
-------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATACTAA----------TTAGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCT------------------CTCTAAGCCTCACTAGACTAAGCCTCTGGCCTCTAATCAGAGGCAGAGCCCTGCTGCCGAAGAAAACCTACATAT----------------------------------------------------------C--------------------ACAATTACCTGCAAGTGTCATAAATTAATTAGCAAATTTATTGAGCCTTATAACT-ACTACTAC----TACACTGCATACATCCATAACTAT--------TGTGGCTAAAAAAAGTCATCCTA-AAA-TCATTTACCGCTGATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
-------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACATAATCC----------AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AAAGAAATAATAATAATAACAACATCACATAATACAAAAAAAAAAAAAAACAAATTATA--ATA---------------------AGAAAAAGCAAAAAGCAAAAAAAAAAAAAAAACACCTCATAAACTAGCTAACATAACCTATAAGTAACTTTAAGCTCAACTAG-----GCCTTGA--------------------------------------------------GTTTTACCATTAAACAAA---------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAGAAAAGAAGAAT----CAGCA-ACTAAATCAATTTAAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
-------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACGGGCACA--AATTACCTATTAAAA-ATTTACAA-A----AGA--------------AAACTTA------------CTTAAAACAT----------------------------------ATA--------------------TGAAACAGAATTGTTTCA----------A---------------AGCTC-------AAAGCAAAACTAACCTCAA---AATCAATTCATAAATTGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAAGAAAAG--GAA---------------------------CACAAA------------------------------------------------------------------------------------------------------------CAG-CAAAGGAAATTGAAAAATTAAGT--------------------------------GTTGTAAAATATGCAA-ACTAAATAAATCA---------------------------------------------------------------------ATT--AA----------------------AAATAAAAAAAAAAAACAACAAAGAAAAGTCAA----------CAATAAAATTAAGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................ATGGAAGACTATTGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
droMoj3
-------CGTGCAGCAATGGAAGACTCTTGGGGTCTTAGCAGCACTACGGGTACGGGCACA--AATTACATACTTAAA-ATCTCAAATAAAGTAGATAAA-AT--------------------------------------------------------------------CAAATACATATAAAAAAAAAAAAATACAATGAAAG--------TAAATAAGAAC---------------AGATC-------GAGGCAAAACTAACCTAAA---AGCTAACTCAAATTCAGG---------------------------CACTC--AAAAGGAGGA-----------------------------------------------------------TA--TAACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGT--------------------------------GTTGAAAAATATGAAAAAACAAATAATTCACTAAA-------------------------------------------------------------T-AATC--AT----TAAATGGGATAAATCCATA-------------------------------------------------AGGAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................AGCACTACGGGTACGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001000100
droGri2
-------CGTGCAGCAATGGAAGACTATTGGGGTCTTAGCAGCACTACGGGTACGGGCACAAAAATTACATATCTAAA-ACCTCTAA--------------------AAA------------------------------------------------------------AAAAAAGACCA--------------------ACTAA--------AATAAAACA----------------------------------------------------AGCAATTTTCAATTTAAAAAGTTTAAA-----------AAAAAACACTT--AAAGGGAAGAAATAATTT----TTTC-AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAAAAGTGTCA---------------------------TCAAAAAT-GATC--AATTAAAA---AA----TGAAATAAATACTAAT--------------------------AATA-ATACATGTACTA-AAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:12 PM